spark-instrumented-optimizer/python/pyspark/worker.py

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#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use this file except in compliance with
# the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
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"""
Worker that receives input from Piped RDD.
"""
[SPARK-4897] [PySpark] Python 3 support This PR update PySpark to support Python 3 (tested with 3.4). Known issue: unpickle array from Pyrolite is broken in Python 3, those tests are skipped. TODO: ec2/spark-ec2.py is not fully tested with python3. Author: Davies Liu <davies@databricks.com> Author: twneale <twneale@gmail.com> Author: Josh Rosen <joshrosen@databricks.com> Closes #5173 from davies/python3 and squashes the following commits: d7d6323 [Davies Liu] fix tests 6c52a98 [Davies Liu] fix mllib test 99e334f [Davies Liu] update timeout b716610 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 cafd5ec [Davies Liu] adddress comments from @mengxr bf225d7 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 179fc8d [Davies Liu] tuning flaky tests 8c8b957 [Davies Liu] fix ResourceWarning in Python 3 5c57c95 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 4006829 [Davies Liu] fix test 2fc0066 [Davies Liu] add python3 path 71535e9 [Davies Liu] fix xrange and divide 5a55ab4 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 125f12c [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 ed498c8 [Davies Liu] fix compatibility with python 3 820e649 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 e8ce8c9 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 ad7c374 [Davies Liu] fix mllib test and warning ef1fc2f [Davies Liu] fix tests 4eee14a [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 20112ff [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 59bb492 [Davies Liu] fix tests 1da268c [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 ca0fdd3 [Davies Liu] fix code style 9563a15 [Davies Liu] add imap back for python 2 0b1ec04 [Davies Liu] make python examples work with Python 3 d2fd566 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 a716d34 [Davies Liu] test with python 3.4 f1700e8 [Davies Liu] fix test in python3 671b1db [Davies Liu] fix test in python3 692ff47 [Davies Liu] fix flaky test 7b9699f [Davies Liu] invalidate import cache for Python 3.3+ 9c58497 [Davies Liu] fix kill worker 309bfbf [Davies Liu] keep compatibility 5707476 [Davies Liu] cleanup, fix hash of string in 3.3+ 8662d5b [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 f53e1f0 [Davies Liu] fix tests 70b6b73 [Davies Liu] compile ec2/spark_ec2.py in python 3 a39167e [Davies Liu] support customize class in __main__ 814c77b [Davies Liu] run unittests with python 3 7f4476e [Davies Liu] mllib tests passed d737924 [Davies Liu] pass ml tests 375ea17 [Davies Liu] SQL tests pass 6cc42a9 [Davies Liu] rename 431a8de [Davies Liu] streaming tests pass 78901a7 [Davies Liu] fix hash of serializer in Python 3 24b2f2e [Davies Liu] pass all RDD tests 35f48fe [Davies Liu] run future again 1eebac2 [Davies Liu] fix conflict in ec2/spark_ec2.py 6e3c21d [Davies Liu] make cloudpickle work with Python3 2fb2db3 [Josh Rosen] Guard more changes behind sys.version; still doesn't run 1aa5e8f [twneale] Turned out `pickle.DictionaryType is dict` == True, so swapped it out 7354371 [twneale] buffer --> memoryview I'm not super sure if this a valid change, but the 2.7 docs recommend using memoryview over buffer where possible, so hoping it'll work. b69ccdf [twneale] Uses the pure python pickle._Pickler instead of c-extension _pickle.Pickler. It appears pyspark 2.7 uses the pure python pickler as well, so this shouldn't degrade pickling performance (?). f40d925 [twneale] xrange --> range e104215 [twneale] Replaces 2.7 types.InstsanceType with 3.4 `object`....could be horribly wrong depending on how types.InstanceType is used elsewhere in the package--see http://bugs.python.org/issue8206 79de9d0 [twneale] Replaces python2.7 `file` with 3.4 _io.TextIOWrapper 2adb42d [Josh Rosen] Fix up some import differences between Python 2 and 3 854be27 [Josh Rosen] Run `futurize` on Python code: 7c5b4ce [Josh Rosen] Remove Python 3 check in shell.py.
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from __future__ import print_function
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import os
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import sys
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import time
import socket
import traceback
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from pyspark.accumulators import _accumulatorRegistry
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from pyspark.broadcast import Broadcast, _broadcastRegistry
from pyspark.taskcontext import TaskContext
from pyspark.files import SparkFiles
from pyspark.serializers import write_with_length, write_int, read_long, \
write_long, read_int, SpecialLengths, PythonEvalType, UTF8Deserializer, PickleSerializer, \
BatchedSerializer, ArrowStreamPandasSerializer
from pyspark.sql.types import toArrowType
from pyspark import shuffle
pickleSer = PickleSerializer()
utf8_deserializer = UTF8Deserializer()
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def report_times(outfile, boot, init, finish):
write_int(SpecialLengths.TIMING_DATA, outfile)
[SPARK-4897] [PySpark] Python 3 support This PR update PySpark to support Python 3 (tested with 3.4). Known issue: unpickle array from Pyrolite is broken in Python 3, those tests are skipped. TODO: ec2/spark-ec2.py is not fully tested with python3. Author: Davies Liu <davies@databricks.com> Author: twneale <twneale@gmail.com> Author: Josh Rosen <joshrosen@databricks.com> Closes #5173 from davies/python3 and squashes the following commits: d7d6323 [Davies Liu] fix tests 6c52a98 [Davies Liu] fix mllib test 99e334f [Davies Liu] update timeout b716610 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 cafd5ec [Davies Liu] adddress comments from @mengxr bf225d7 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 179fc8d [Davies Liu] tuning flaky tests 8c8b957 [Davies Liu] fix ResourceWarning in Python 3 5c57c95 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 4006829 [Davies Liu] fix test 2fc0066 [Davies Liu] add python3 path 71535e9 [Davies Liu] fix xrange and divide 5a55ab4 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 125f12c [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 ed498c8 [Davies Liu] fix compatibility with python 3 820e649 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 e8ce8c9 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 ad7c374 [Davies Liu] fix mllib test and warning ef1fc2f [Davies Liu] fix tests 4eee14a [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 20112ff [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 59bb492 [Davies Liu] fix tests 1da268c [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 ca0fdd3 [Davies Liu] fix code style 9563a15 [Davies Liu] add imap back for python 2 0b1ec04 [Davies Liu] make python examples work with Python 3 d2fd566 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 a716d34 [Davies Liu] test with python 3.4 f1700e8 [Davies Liu] fix test in python3 671b1db [Davies Liu] fix test in python3 692ff47 [Davies Liu] fix flaky test 7b9699f [Davies Liu] invalidate import cache for Python 3.3+ 9c58497 [Davies Liu] fix kill worker 309bfbf [Davies Liu] keep compatibility 5707476 [Davies Liu] cleanup, fix hash of string in 3.3+ 8662d5b [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 f53e1f0 [Davies Liu] fix tests 70b6b73 [Davies Liu] compile ec2/spark_ec2.py in python 3 a39167e [Davies Liu] support customize class in __main__ 814c77b [Davies Liu] run unittests with python 3 7f4476e [Davies Liu] mllib tests passed d737924 [Davies Liu] pass ml tests 375ea17 [Davies Liu] SQL tests pass 6cc42a9 [Davies Liu] rename 431a8de [Davies Liu] streaming tests pass 78901a7 [Davies Liu] fix hash of serializer in Python 3 24b2f2e [Davies Liu] pass all RDD tests 35f48fe [Davies Liu] run future again 1eebac2 [Davies Liu] fix conflict in ec2/spark_ec2.py 6e3c21d [Davies Liu] make cloudpickle work with Python3 2fb2db3 [Josh Rosen] Guard more changes behind sys.version; still doesn't run 1aa5e8f [twneale] Turned out `pickle.DictionaryType is dict` == True, so swapped it out 7354371 [twneale] buffer --> memoryview I'm not super sure if this a valid change, but the 2.7 docs recommend using memoryview over buffer where possible, so hoping it'll work. b69ccdf [twneale] Uses the pure python pickle._Pickler instead of c-extension _pickle.Pickler. It appears pyspark 2.7 uses the pure python pickler as well, so this shouldn't degrade pickling performance (?). f40d925 [twneale] xrange --> range e104215 [twneale] Replaces 2.7 types.InstsanceType with 3.4 `object`....could be horribly wrong depending on how types.InstanceType is used elsewhere in the package--see http://bugs.python.org/issue8206 79de9d0 [twneale] Replaces python2.7 `file` with 3.4 _io.TextIOWrapper 2adb42d [Josh Rosen] Fix up some import differences between Python 2 and 3 854be27 [Josh Rosen] Run `futurize` on Python code: 7c5b4ce [Josh Rosen] Remove Python 3 check in shell.py.
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write_long(int(1000 * boot), outfile)
write_long(int(1000 * init), outfile)
write_long(int(1000 * finish), outfile)
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def add_path(path):
# worker can be used, so donot add path multiple times
if path not in sys.path:
# overwrite system packages
sys.path.insert(1, path)
def read_command(serializer, file):
command = serializer._read_with_length(file)
if isinstance(command, Broadcast):
command = serializer.loads(command.value)
return command
def chain(f, g):
"""chain two functions together """
return lambda *a: g(f(*a))
[SPARK-14267] [SQL] [PYSPARK] execute multiple Python UDFs within single batch ## What changes were proposed in this pull request? This PR support multiple Python UDFs within single batch, also improve the performance. ```python >>> from pyspark.sql.types import IntegerType >>> sqlContext.registerFunction("double", lambda x: x * 2, IntegerType()) >>> sqlContext.registerFunction("add", lambda x, y: x + y, IntegerType()) >>> sqlContext.sql("SELECT double(add(1, 2)), add(double(2), 1)").explain(True) == Parsed Logical Plan == 'Project [unresolvedalias('double('add(1, 2)), None),unresolvedalias('add('double(2), 1), None)] +- OneRowRelation$ == Analyzed Logical Plan == double(add(1, 2)): int, add(double(2), 1): int Project [double(add(1, 2))#14,add(double(2), 1)#15] +- Project [double(add(1, 2))#14,add(double(2), 1)#15] +- Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] +- EvaluatePython [add(pythonUDF1#17, 1)], [pythonUDF0#18] +- EvaluatePython [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- OneRowRelation$ == Optimized Logical Plan == Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] +- EvaluatePython [add(pythonUDF1#17, 1)], [pythonUDF0#18] +- EvaluatePython [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- OneRowRelation$ == Physical Plan == WholeStageCodegen : +- Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] : +- INPUT +- !BatchPythonEvaluation [add(pythonUDF1#17, 1)], [pythonUDF0#16,pythonUDF1#17,pythonUDF0#18] +- !BatchPythonEvaluation [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- Scan OneRowRelation[] ``` ## How was this patch tested? Added new tests. Using the following script to benchmark 1, 2 and 3 udfs, ``` df = sqlContext.range(1, 1 << 23, 1, 4) double = F.udf(lambda x: x * 2, LongType()) print df.select(double(df.id)).count() print df.select(double(df.id), double(df.id + 1)).count() print df.select(double(df.id), double(df.id + 1), double(df.id + 2)).count() ``` Here is the results: N | Before | After | speed up ---- |------------ | -------------|------ 1 | 22 s | 7 s | 3.1X 2 | 38 s | 13 s | 2.9X 3 | 58 s | 16 s | 3.6X This benchmark ran locally with 4 CPUs. For 3 UDFs, it launched 12 Python before before this patch, 4 process after this patch. After this patch, it will use less memory for multiple UDFs than before (less buffering). Author: Davies Liu <davies@databricks.com> Closes #12057 from davies/multi_udfs.
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def wrap_udf(f, return_type):
if return_type.needConversion():
toInternal = return_type.toInternal
return lambda *a: toInternal(f(*a))
else:
return lambda *a: f(*a)
def wrap_pandas_udf(f, return_type):
arrow_return_type = toArrowType(return_type)
def verify_result_length(*a):
result = f(*a)
if not hasattr(result, "__len__"):
raise TypeError("Return type of pandas_udf should be a Pandas.Series")
if len(result) != len(a[0]):
raise RuntimeError("Result vector from pandas_udf was not the required length: "
"expected %d, got %d" % (len(a[0]), len(result)))
return result
return lambda *a: (verify_result_length(*a), arrow_return_type)
def read_single_udf(pickleSer, infile, eval_type):
[SPARK-14267] [SQL] [PYSPARK] execute multiple Python UDFs within single batch ## What changes were proposed in this pull request? This PR support multiple Python UDFs within single batch, also improve the performance. ```python >>> from pyspark.sql.types import IntegerType >>> sqlContext.registerFunction("double", lambda x: x * 2, IntegerType()) >>> sqlContext.registerFunction("add", lambda x, y: x + y, IntegerType()) >>> sqlContext.sql("SELECT double(add(1, 2)), add(double(2), 1)").explain(True) == Parsed Logical Plan == 'Project [unresolvedalias('double('add(1, 2)), None),unresolvedalias('add('double(2), 1), None)] +- OneRowRelation$ == Analyzed Logical Plan == double(add(1, 2)): int, add(double(2), 1): int Project [double(add(1, 2))#14,add(double(2), 1)#15] +- Project [double(add(1, 2))#14,add(double(2), 1)#15] +- Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] +- EvaluatePython [add(pythonUDF1#17, 1)], [pythonUDF0#18] +- EvaluatePython [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- OneRowRelation$ == Optimized Logical Plan == Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] +- EvaluatePython [add(pythonUDF1#17, 1)], [pythonUDF0#18] +- EvaluatePython [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- OneRowRelation$ == Physical Plan == WholeStageCodegen : +- Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] : +- INPUT +- !BatchPythonEvaluation [add(pythonUDF1#17, 1)], [pythonUDF0#16,pythonUDF1#17,pythonUDF0#18] +- !BatchPythonEvaluation [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- Scan OneRowRelation[] ``` ## How was this patch tested? Added new tests. Using the following script to benchmark 1, 2 and 3 udfs, ``` df = sqlContext.range(1, 1 << 23, 1, 4) double = F.udf(lambda x: x * 2, LongType()) print df.select(double(df.id)).count() print df.select(double(df.id), double(df.id + 1)).count() print df.select(double(df.id), double(df.id + 1), double(df.id + 2)).count() ``` Here is the results: N | Before | After | speed up ---- |------------ | -------------|------ 1 | 22 s | 7 s | 3.1X 2 | 38 s | 13 s | 2.9X 3 | 58 s | 16 s | 3.6X This benchmark ran locally with 4 CPUs. For 3 UDFs, it launched 12 Python before before this patch, 4 process after this patch. After this patch, it will use less memory for multiple UDFs than before (less buffering). Author: Davies Liu <davies@databricks.com> Closes #12057 from davies/multi_udfs.
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num_arg = read_int(infile)
arg_offsets = [read_int(infile) for i in range(num_arg)]
row_func = None
for i in range(read_int(infile)):
f, return_type = read_command(pickleSer, infile)
if row_func is None:
row_func = f
else:
row_func = chain(row_func, f)
[SPARK-14267] [SQL] [PYSPARK] execute multiple Python UDFs within single batch ## What changes were proposed in this pull request? This PR support multiple Python UDFs within single batch, also improve the performance. ```python >>> from pyspark.sql.types import IntegerType >>> sqlContext.registerFunction("double", lambda x: x * 2, IntegerType()) >>> sqlContext.registerFunction("add", lambda x, y: x + y, IntegerType()) >>> sqlContext.sql("SELECT double(add(1, 2)), add(double(2), 1)").explain(True) == Parsed Logical Plan == 'Project [unresolvedalias('double('add(1, 2)), None),unresolvedalias('add('double(2), 1), None)] +- OneRowRelation$ == Analyzed Logical Plan == double(add(1, 2)): int, add(double(2), 1): int Project [double(add(1, 2))#14,add(double(2), 1)#15] +- Project [double(add(1, 2))#14,add(double(2), 1)#15] +- Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] +- EvaluatePython [add(pythonUDF1#17, 1)], [pythonUDF0#18] +- EvaluatePython [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- OneRowRelation$ == Optimized Logical Plan == Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] +- EvaluatePython [add(pythonUDF1#17, 1)], [pythonUDF0#18] +- EvaluatePython [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- OneRowRelation$ == Physical Plan == WholeStageCodegen : +- Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] : +- INPUT +- !BatchPythonEvaluation [add(pythonUDF1#17, 1)], [pythonUDF0#16,pythonUDF1#17,pythonUDF0#18] +- !BatchPythonEvaluation [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- Scan OneRowRelation[] ``` ## How was this patch tested? Added new tests. Using the following script to benchmark 1, 2 and 3 udfs, ``` df = sqlContext.range(1, 1 << 23, 1, 4) double = F.udf(lambda x: x * 2, LongType()) print df.select(double(df.id)).count() print df.select(double(df.id), double(df.id + 1)).count() print df.select(double(df.id), double(df.id + 1), double(df.id + 2)).count() ``` Here is the results: N | Before | After | speed up ---- |------------ | -------------|------ 1 | 22 s | 7 s | 3.1X 2 | 38 s | 13 s | 2.9X 3 | 58 s | 16 s | 3.6X This benchmark ran locally with 4 CPUs. For 3 UDFs, it launched 12 Python before before this patch, 4 process after this patch. After this patch, it will use less memory for multiple UDFs than before (less buffering). Author: Davies Liu <davies@databricks.com> Closes #12057 from davies/multi_udfs.
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# the last returnType will be the return type of UDF
if eval_type == PythonEvalType.SQL_PANDAS_UDF:
return arg_offsets, wrap_pandas_udf(row_func, return_type)
else:
return arg_offsets, wrap_udf(row_func, return_type)
[SPARK-14267] [SQL] [PYSPARK] execute multiple Python UDFs within single batch ## What changes were proposed in this pull request? This PR support multiple Python UDFs within single batch, also improve the performance. ```python >>> from pyspark.sql.types import IntegerType >>> sqlContext.registerFunction("double", lambda x: x * 2, IntegerType()) >>> sqlContext.registerFunction("add", lambda x, y: x + y, IntegerType()) >>> sqlContext.sql("SELECT double(add(1, 2)), add(double(2), 1)").explain(True) == Parsed Logical Plan == 'Project [unresolvedalias('double('add(1, 2)), None),unresolvedalias('add('double(2), 1), None)] +- OneRowRelation$ == Analyzed Logical Plan == double(add(1, 2)): int, add(double(2), 1): int Project [double(add(1, 2))#14,add(double(2), 1)#15] +- Project [double(add(1, 2))#14,add(double(2), 1)#15] +- Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] +- EvaluatePython [add(pythonUDF1#17, 1)], [pythonUDF0#18] +- EvaluatePython [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- OneRowRelation$ == Optimized Logical Plan == Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] +- EvaluatePython [add(pythonUDF1#17, 1)], [pythonUDF0#18] +- EvaluatePython [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- OneRowRelation$ == Physical Plan == WholeStageCodegen : +- Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] : +- INPUT +- !BatchPythonEvaluation [add(pythonUDF1#17, 1)], [pythonUDF0#16,pythonUDF1#17,pythonUDF0#18] +- !BatchPythonEvaluation [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- Scan OneRowRelation[] ``` ## How was this patch tested? Added new tests. Using the following script to benchmark 1, 2 and 3 udfs, ``` df = sqlContext.range(1, 1 << 23, 1, 4) double = F.udf(lambda x: x * 2, LongType()) print df.select(double(df.id)).count() print df.select(double(df.id), double(df.id + 1)).count() print df.select(double(df.id), double(df.id + 1), double(df.id + 2)).count() ``` Here is the results: N | Before | After | speed up ---- |------------ | -------------|------ 1 | 22 s | 7 s | 3.1X 2 | 38 s | 13 s | 2.9X 3 | 58 s | 16 s | 3.6X This benchmark ran locally with 4 CPUs. For 3 UDFs, it launched 12 Python before before this patch, 4 process after this patch. After this patch, it will use less memory for multiple UDFs than before (less buffering). Author: Davies Liu <davies@databricks.com> Closes #12057 from davies/multi_udfs.
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def read_udfs(pickleSer, infile, eval_type):
[SPARK-14267] [SQL] [PYSPARK] execute multiple Python UDFs within single batch ## What changes were proposed in this pull request? This PR support multiple Python UDFs within single batch, also improve the performance. ```python >>> from pyspark.sql.types import IntegerType >>> sqlContext.registerFunction("double", lambda x: x * 2, IntegerType()) >>> sqlContext.registerFunction("add", lambda x, y: x + y, IntegerType()) >>> sqlContext.sql("SELECT double(add(1, 2)), add(double(2), 1)").explain(True) == Parsed Logical Plan == 'Project [unresolvedalias('double('add(1, 2)), None),unresolvedalias('add('double(2), 1), None)] +- OneRowRelation$ == Analyzed Logical Plan == double(add(1, 2)): int, add(double(2), 1): int Project [double(add(1, 2))#14,add(double(2), 1)#15] +- Project [double(add(1, 2))#14,add(double(2), 1)#15] +- Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] +- EvaluatePython [add(pythonUDF1#17, 1)], [pythonUDF0#18] +- EvaluatePython [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- OneRowRelation$ == Optimized Logical Plan == Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] +- EvaluatePython [add(pythonUDF1#17, 1)], [pythonUDF0#18] +- EvaluatePython [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- OneRowRelation$ == Physical Plan == WholeStageCodegen : +- Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] : +- INPUT +- !BatchPythonEvaluation [add(pythonUDF1#17, 1)], [pythonUDF0#16,pythonUDF1#17,pythonUDF0#18] +- !BatchPythonEvaluation [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- Scan OneRowRelation[] ``` ## How was this patch tested? Added new tests. Using the following script to benchmark 1, 2 and 3 udfs, ``` df = sqlContext.range(1, 1 << 23, 1, 4) double = F.udf(lambda x: x * 2, LongType()) print df.select(double(df.id)).count() print df.select(double(df.id), double(df.id + 1)).count() print df.select(double(df.id), double(df.id + 1), double(df.id + 2)).count() ``` Here is the results: N | Before | After | speed up ---- |------------ | -------------|------ 1 | 22 s | 7 s | 3.1X 2 | 38 s | 13 s | 2.9X 3 | 58 s | 16 s | 3.6X This benchmark ran locally with 4 CPUs. For 3 UDFs, it launched 12 Python before before this patch, 4 process after this patch. After this patch, it will use less memory for multiple UDFs than before (less buffering). Author: Davies Liu <davies@databricks.com> Closes #12057 from davies/multi_udfs.
2016-03-31 19:40:20 -04:00
num_udfs = read_int(infile)
udfs = {}
call_udf = []
for i in range(num_udfs):
arg_offsets, udf = read_single_udf(pickleSer, infile, eval_type)
udfs['f%d' % i] = udf
args = ["a[%d]" % o for o in arg_offsets]
call_udf.append("f%d(%s)" % (i, ", ".join(args)))
# Create function like this:
# lambda a: (f0(a0), f1(a1, a2), f2(a3))
# In the special case of a single UDF this will return a single result rather
# than a tuple of results; this is the format that the JVM side expects.
mapper_str = "lambda a: (%s)" % (", ".join(call_udf))
mapper = eval(mapper_str, udfs)
[SPARK-14267] [SQL] [PYSPARK] execute multiple Python UDFs within single batch ## What changes were proposed in this pull request? This PR support multiple Python UDFs within single batch, also improve the performance. ```python >>> from pyspark.sql.types import IntegerType >>> sqlContext.registerFunction("double", lambda x: x * 2, IntegerType()) >>> sqlContext.registerFunction("add", lambda x, y: x + y, IntegerType()) >>> sqlContext.sql("SELECT double(add(1, 2)), add(double(2), 1)").explain(True) == Parsed Logical Plan == 'Project [unresolvedalias('double('add(1, 2)), None),unresolvedalias('add('double(2), 1), None)] +- OneRowRelation$ == Analyzed Logical Plan == double(add(1, 2)): int, add(double(2), 1): int Project [double(add(1, 2))#14,add(double(2), 1)#15] +- Project [double(add(1, 2))#14,add(double(2), 1)#15] +- Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] +- EvaluatePython [add(pythonUDF1#17, 1)], [pythonUDF0#18] +- EvaluatePython [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- OneRowRelation$ == Optimized Logical Plan == Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] +- EvaluatePython [add(pythonUDF1#17, 1)], [pythonUDF0#18] +- EvaluatePython [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- OneRowRelation$ == Physical Plan == WholeStageCodegen : +- Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] : +- INPUT +- !BatchPythonEvaluation [add(pythonUDF1#17, 1)], [pythonUDF0#16,pythonUDF1#17,pythonUDF0#18] +- !BatchPythonEvaluation [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- Scan OneRowRelation[] ``` ## How was this patch tested? Added new tests. Using the following script to benchmark 1, 2 and 3 udfs, ``` df = sqlContext.range(1, 1 << 23, 1, 4) double = F.udf(lambda x: x * 2, LongType()) print df.select(double(df.id)).count() print df.select(double(df.id), double(df.id + 1)).count() print df.select(double(df.id), double(df.id + 1), double(df.id + 2)).count() ``` Here is the results: N | Before | After | speed up ---- |------------ | -------------|------ 1 | 22 s | 7 s | 3.1X 2 | 38 s | 13 s | 2.9X 3 | 58 s | 16 s | 3.6X This benchmark ran locally with 4 CPUs. For 3 UDFs, it launched 12 Python before before this patch, 4 process after this patch. After this patch, it will use less memory for multiple UDFs than before (less buffering). Author: Davies Liu <davies@databricks.com> Closes #12057 from davies/multi_udfs.
2016-03-31 19:40:20 -04:00
func = lambda _, it: map(mapper, it)
if eval_type == PythonEvalType.SQL_PANDAS_UDF:
ser = ArrowStreamPandasSerializer()
else:
ser = BatchedSerializer(PickleSerializer(), 100)
[SPARK-14267] [SQL] [PYSPARK] execute multiple Python UDFs within single batch ## What changes were proposed in this pull request? This PR support multiple Python UDFs within single batch, also improve the performance. ```python >>> from pyspark.sql.types import IntegerType >>> sqlContext.registerFunction("double", lambda x: x * 2, IntegerType()) >>> sqlContext.registerFunction("add", lambda x, y: x + y, IntegerType()) >>> sqlContext.sql("SELECT double(add(1, 2)), add(double(2), 1)").explain(True) == Parsed Logical Plan == 'Project [unresolvedalias('double('add(1, 2)), None),unresolvedalias('add('double(2), 1), None)] +- OneRowRelation$ == Analyzed Logical Plan == double(add(1, 2)): int, add(double(2), 1): int Project [double(add(1, 2))#14,add(double(2), 1)#15] +- Project [double(add(1, 2))#14,add(double(2), 1)#15] +- Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] +- EvaluatePython [add(pythonUDF1#17, 1)], [pythonUDF0#18] +- EvaluatePython [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- OneRowRelation$ == Optimized Logical Plan == Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] +- EvaluatePython [add(pythonUDF1#17, 1)], [pythonUDF0#18] +- EvaluatePython [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- OneRowRelation$ == Physical Plan == WholeStageCodegen : +- Project [pythonUDF0#16 AS double(add(1, 2))#14,pythonUDF0#18 AS add(double(2), 1)#15] : +- INPUT +- !BatchPythonEvaluation [add(pythonUDF1#17, 1)], [pythonUDF0#16,pythonUDF1#17,pythonUDF0#18] +- !BatchPythonEvaluation [double(add(1, 2)),double(2)], [pythonUDF0#16,pythonUDF1#17] +- Scan OneRowRelation[] ``` ## How was this patch tested? Added new tests. Using the following script to benchmark 1, 2 and 3 udfs, ``` df = sqlContext.range(1, 1 << 23, 1, 4) double = F.udf(lambda x: x * 2, LongType()) print df.select(double(df.id)).count() print df.select(double(df.id), double(df.id + 1)).count() print df.select(double(df.id), double(df.id + 1), double(df.id + 2)).count() ``` Here is the results: N | Before | After | speed up ---- |------------ | -------------|------ 1 | 22 s | 7 s | 3.1X 2 | 38 s | 13 s | 2.9X 3 | 58 s | 16 s | 3.6X This benchmark ran locally with 4 CPUs. For 3 UDFs, it launched 12 Python before before this patch, 4 process after this patch. After this patch, it will use less memory for multiple UDFs than before (less buffering). Author: Davies Liu <davies@databricks.com> Closes #12057 from davies/multi_udfs.
2016-03-31 19:40:20 -04:00
# profiling is not supported for UDF
return func, None, ser, ser
2013-05-06 19:34:30 -04:00
def main(infile, outfile):
try:
boot_time = time.time()
split_index = read_int(infile)
if split_index == -1: # for unit tests
exit(-1)
version = utf8_deserializer.loads(infile)
if version != "%d.%d" % sys.version_info[:2]:
raise Exception(("Python in worker has different version %s than that in " +
"driver %s, PySpark cannot run with different minor versions." +
"Please check environment variables PYSPARK_PYTHON and " +
"PYSPARK_DRIVER_PYTHON are correctly set.") %
("%d.%d" % sys.version_info[:2], version))
# initialize global state
taskContext = TaskContext._getOrCreate()
taskContext._stageId = read_int(infile)
taskContext._partitionId = read_int(infile)
taskContext._attemptNumber = read_int(infile)
taskContext._taskAttemptId = read_long(infile)
shuffle.MemoryBytesSpilled = 0
shuffle.DiskBytesSpilled = 0
_accumulatorRegistry.clear()
# fetch name of workdir
spark_files_dir = utf8_deserializer.loads(infile)
SparkFiles._root_directory = spark_files_dir
SparkFiles._is_running_on_worker = True
# fetch names of includes (*.zip and *.egg files) and construct PYTHONPATH
add_path(spark_files_dir) # *.py files that were added will be copied here
[SPARK-2470] PEP8 fixes to PySpark This pull request aims to resolve all outstanding PEP8 violations in PySpark. Author: Nicholas Chammas <nicholas.chammas@gmail.com> Author: nchammas <nicholas.chammas@gmail.com> Closes #1505 from nchammas/master and squashes the following commits: 98171af [Nicholas Chammas] [SPARK-2470] revert PEP 8 fixes to cloudpickle cba7768 [Nicholas Chammas] [SPARK-2470] wrap expression list in parentheses e178dbe [Nicholas Chammas] [SPARK-2470] style - change position of line break 9127d2b [Nicholas Chammas] [SPARK-2470] wrap expression lists in parentheses 22132a4 [Nicholas Chammas] [SPARK-2470] wrap conditionals in parentheses 24639bc [Nicholas Chammas] [SPARK-2470] fix whitespace for doctest 7d557b7 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to tests.py 8f8e4c0 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to storagelevel.py b3b96cf [Nicholas Chammas] [SPARK-2470] PEP8 fixes to statcounter.py d644477 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to worker.py aa3a7b6 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to sql.py 1916859 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to shell.py 95d1d95 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to serializers.py a0fec2e [Nicholas Chammas] [SPARK-2470] PEP8 fixes to mllib c85e1e5 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to join.py d14f2f1 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to __init__.py 81fcb20 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to resultiterable.py 1bde265 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to java_gateway.py 7fc849c [Nicholas Chammas] [SPARK-2470] PEP8 fixes to daemon.py ca2d28b [Nicholas Chammas] [SPARK-2470] PEP8 fixes to context.py f4e0039 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to conf.py a6d5e4b [Nicholas Chammas] [SPARK-2470] PEP8 fixes to cloudpickle.py f0a7ebf [Nicholas Chammas] [SPARK-2470] PEP8 fixes to rddsampler.py 4dd148f [nchammas] Merge pull request #5 from apache/master f7e4581 [Nicholas Chammas] unrelated pep8 fix a36eed0 [Nicholas Chammas] name ec2 instances and security groups consistently de7292a [nchammas] Merge pull request #4 from apache/master 2e4fe00 [nchammas] Merge pull request #3 from apache/master 89fde08 [nchammas] Merge pull request #2 from apache/master 69f6e22 [Nicholas Chammas] PEP8 fixes 2627247 [Nicholas Chammas] broke up lines before they hit 100 chars 6544b7e [Nicholas Chammas] [SPARK-2065] give launched instances names 69da6cf [nchammas] Merge pull request #1 from apache/master
2014-07-22 01:30:53 -04:00
num_python_includes = read_int(infile)
for _ in range(num_python_includes):
filename = utf8_deserializer.loads(infile)
add_path(os.path.join(spark_files_dir, filename))
[SPARK-4897] [PySpark] Python 3 support This PR update PySpark to support Python 3 (tested with 3.4). Known issue: unpickle array from Pyrolite is broken in Python 3, those tests are skipped. TODO: ec2/spark-ec2.py is not fully tested with python3. Author: Davies Liu <davies@databricks.com> Author: twneale <twneale@gmail.com> Author: Josh Rosen <joshrosen@databricks.com> Closes #5173 from davies/python3 and squashes the following commits: d7d6323 [Davies Liu] fix tests 6c52a98 [Davies Liu] fix mllib test 99e334f [Davies Liu] update timeout b716610 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 cafd5ec [Davies Liu] adddress comments from @mengxr bf225d7 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 179fc8d [Davies Liu] tuning flaky tests 8c8b957 [Davies Liu] fix ResourceWarning in Python 3 5c57c95 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 4006829 [Davies Liu] fix test 2fc0066 [Davies Liu] add python3 path 71535e9 [Davies Liu] fix xrange and divide 5a55ab4 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 125f12c [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 ed498c8 [Davies Liu] fix compatibility with python 3 820e649 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 e8ce8c9 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 ad7c374 [Davies Liu] fix mllib test and warning ef1fc2f [Davies Liu] fix tests 4eee14a [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 20112ff [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 59bb492 [Davies Liu] fix tests 1da268c [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 ca0fdd3 [Davies Liu] fix code style 9563a15 [Davies Liu] add imap back for python 2 0b1ec04 [Davies Liu] make python examples work with Python 3 d2fd566 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 a716d34 [Davies Liu] test with python 3.4 f1700e8 [Davies Liu] fix test in python3 671b1db [Davies Liu] fix test in python3 692ff47 [Davies Liu] fix flaky test 7b9699f [Davies Liu] invalidate import cache for Python 3.3+ 9c58497 [Davies Liu] fix kill worker 309bfbf [Davies Liu] keep compatibility 5707476 [Davies Liu] cleanup, fix hash of string in 3.3+ 8662d5b [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 f53e1f0 [Davies Liu] fix tests 70b6b73 [Davies Liu] compile ec2/spark_ec2.py in python 3 a39167e [Davies Liu] support customize class in __main__ 814c77b [Davies Liu] run unittests with python 3 7f4476e [Davies Liu] mllib tests passed d737924 [Davies Liu] pass ml tests 375ea17 [Davies Liu] SQL tests pass 6cc42a9 [Davies Liu] rename 431a8de [Davies Liu] streaming tests pass 78901a7 [Davies Liu] fix hash of serializer in Python 3 24b2f2e [Davies Liu] pass all RDD tests 35f48fe [Davies Liu] run future again 1eebac2 [Davies Liu] fix conflict in ec2/spark_ec2.py 6e3c21d [Davies Liu] make cloudpickle work with Python3 2fb2db3 [Josh Rosen] Guard more changes behind sys.version; still doesn't run 1aa5e8f [twneale] Turned out `pickle.DictionaryType is dict` == True, so swapped it out 7354371 [twneale] buffer --> memoryview I'm not super sure if this a valid change, but the 2.7 docs recommend using memoryview over buffer where possible, so hoping it'll work. b69ccdf [twneale] Uses the pure python pickle._Pickler instead of c-extension _pickle.Pickler. It appears pyspark 2.7 uses the pure python pickler as well, so this shouldn't degrade pickling performance (?). f40d925 [twneale] xrange --> range e104215 [twneale] Replaces 2.7 types.InstsanceType with 3.4 `object`....could be horribly wrong depending on how types.InstanceType is used elsewhere in the package--see http://bugs.python.org/issue8206 79de9d0 [twneale] Replaces python2.7 `file` with 3.4 _io.TextIOWrapper 2adb42d [Josh Rosen] Fix up some import differences between Python 2 and 3 854be27 [Josh Rosen] Run `futurize` on Python code: 7c5b4ce [Josh Rosen] Remove Python 3 check in shell.py.
2015-04-16 19:20:57 -04:00
if sys.version > '3':
import importlib
importlib.invalidate_caches()
# fetch names and values of broadcast variables
num_broadcast_variables = read_int(infile)
for _ in range(num_broadcast_variables):
bid = read_long(infile)
[SPARK-3030] [PySpark] Reuse Python worker Reuse Python worker to avoid the overhead of fork() Python process for each tasks. It also tracks the broadcasts for each worker, avoid sending repeated broadcasts. This can reduce the time for dummy task from 22ms to 13ms (-40%). It can help to reduce the latency for Spark Streaming. For a job with broadcast (43M after compress): ``` b = sc.broadcast(set(range(30000000))) print sc.parallelize(range(24000), 100).filter(lambda x: x in b.value).count() ``` It will finish in 281s without reused worker, and it will finish in 65s with reused worker(4 CPUs). After reusing the worker, it can save about 9 seconds for transfer and deserialize the broadcast for each tasks. It's enabled by default, could be disabled by `spark.python.worker.reuse = false`. Author: Davies Liu <davies.liu@gmail.com> Closes #2259 from davies/reuse-worker and squashes the following commits: f11f617 [Davies Liu] Merge branch 'master' into reuse-worker 3939f20 [Davies Liu] fix bug in serializer in mllib cf1c55e [Davies Liu] address comments 3133a60 [Davies Liu] fix accumulator with reused worker 760ab1f [Davies Liu] do not reuse worker if there are any exceptions 7abb224 [Davies Liu] refactor: sychronized with itself ac3206e [Davies Liu] renaming 8911f44 [Davies Liu] synchronized getWorkerBroadcasts() 6325fc1 [Davies Liu] bugfix: bid >= 0 e0131a2 [Davies Liu] fix name of config 583716e [Davies Liu] only reuse completed and not interrupted worker ace2917 [Davies Liu] kill python worker after timeout 6123d0f [Davies Liu] track broadcasts for each worker 8d2f08c [Davies Liu] reuse python worker
2014-09-13 19:22:04 -04:00
if bid >= 0:
[SPARK-4548] []SPARK-4517] improve performance of python broadcast Re-implement the Python broadcast using file: 1) serialize the python object using cPickle, write into disks. 2) Create a wrapper in JVM (for the dumped file), it read data from during serialization 3) Using TorrentBroadcast or HttpBroadcast to transfer the data (compressed) into executors 4) During deserialization, writing the data into disk. 5) Passing the path into Python worker, read data from disk and unpickle it into python object, until the first access. It fixes the performance regression introduced in #2659, has similar performance as 1.1, but support object larger than 2G, also improve the memory efficiency (only one compressed copy in driver and executor). Testing with a 500M broadcast and 4 tasks (excluding the benefit from reused worker in 1.2): name | 1.1 | 1.2 with this patch | improvement ---------|--------|---------|-------- python-broadcast-w-bytes | 25.20 | 9.33 | 170.13% | python-broadcast-w-set | 4.13 | 4.50 | -8.35% | Testing with 100 tasks (16 CPUs): name | 1.1 | 1.2 with this patch | improvement ---------|--------|---------|-------- python-broadcast-w-bytes | 38.16 | 8.40 | 353.98% python-broadcast-w-set | 23.29 | 9.59 | 142.80% Author: Davies Liu <davies@databricks.com> Closes #3417 from davies/pybroadcast and squashes the following commits: 50a58e0 [Davies Liu] address comments b98de1d [Davies Liu] disable gc while unpickle e5ee6b9 [Davies Liu] support large string 09303b8 [Davies Liu] read all data into memory dde02dd [Davies Liu] improve performance of python broadcast
2014-11-24 20:17:03 -05:00
path = utf8_deserializer.loads(infile)
_broadcastRegistry[bid] = Broadcast(path=path)
[SPARK-3030] [PySpark] Reuse Python worker Reuse Python worker to avoid the overhead of fork() Python process for each tasks. It also tracks the broadcasts for each worker, avoid sending repeated broadcasts. This can reduce the time for dummy task from 22ms to 13ms (-40%). It can help to reduce the latency for Spark Streaming. For a job with broadcast (43M after compress): ``` b = sc.broadcast(set(range(30000000))) print sc.parallelize(range(24000), 100).filter(lambda x: x in b.value).count() ``` It will finish in 281s without reused worker, and it will finish in 65s with reused worker(4 CPUs). After reusing the worker, it can save about 9 seconds for transfer and deserialize the broadcast for each tasks. It's enabled by default, could be disabled by `spark.python.worker.reuse = false`. Author: Davies Liu <davies.liu@gmail.com> Closes #2259 from davies/reuse-worker and squashes the following commits: f11f617 [Davies Liu] Merge branch 'master' into reuse-worker 3939f20 [Davies Liu] fix bug in serializer in mllib cf1c55e [Davies Liu] address comments 3133a60 [Davies Liu] fix accumulator with reused worker 760ab1f [Davies Liu] do not reuse worker if there are any exceptions 7abb224 [Davies Liu] refactor: sychronized with itself ac3206e [Davies Liu] renaming 8911f44 [Davies Liu] synchronized getWorkerBroadcasts() 6325fc1 [Davies Liu] bugfix: bid >= 0 e0131a2 [Davies Liu] fix name of config 583716e [Davies Liu] only reuse completed and not interrupted worker ace2917 [Davies Liu] kill python worker after timeout 6123d0f [Davies Liu] track broadcasts for each worker 8d2f08c [Davies Liu] reuse python worker
2014-09-13 19:22:04 -04:00
else:
bid = - bid - 1
_broadcastRegistry.pop(bid)
[SPARK-3030] [PySpark] Reuse Python worker Reuse Python worker to avoid the overhead of fork() Python process for each tasks. It also tracks the broadcasts for each worker, avoid sending repeated broadcasts. This can reduce the time for dummy task from 22ms to 13ms (-40%). It can help to reduce the latency for Spark Streaming. For a job with broadcast (43M after compress): ``` b = sc.broadcast(set(range(30000000))) print sc.parallelize(range(24000), 100).filter(lambda x: x in b.value).count() ``` It will finish in 281s without reused worker, and it will finish in 65s with reused worker(4 CPUs). After reusing the worker, it can save about 9 seconds for transfer and deserialize the broadcast for each tasks. It's enabled by default, could be disabled by `spark.python.worker.reuse = false`. Author: Davies Liu <davies.liu@gmail.com> Closes #2259 from davies/reuse-worker and squashes the following commits: f11f617 [Davies Liu] Merge branch 'master' into reuse-worker 3939f20 [Davies Liu] fix bug in serializer in mllib cf1c55e [Davies Liu] address comments 3133a60 [Davies Liu] fix accumulator with reused worker 760ab1f [Davies Liu] do not reuse worker if there are any exceptions 7abb224 [Davies Liu] refactor: sychronized with itself ac3206e [Davies Liu] renaming 8911f44 [Davies Liu] synchronized getWorkerBroadcasts() 6325fc1 [Davies Liu] bugfix: bid >= 0 e0131a2 [Davies Liu] fix name of config 583716e [Davies Liu] only reuse completed and not interrupted worker ace2917 [Davies Liu] kill python worker after timeout 6123d0f [Davies Liu] track broadcasts for each worker 8d2f08c [Davies Liu] reuse python worker
2014-09-13 19:22:04 -04:00
_accumulatorRegistry.clear()
eval_type = read_int(infile)
if eval_type == PythonEvalType.NON_UDF:
func, profiler, deserializer, serializer = read_command(pickleSer, infile)
else:
func, profiler, deserializer, serializer = read_udfs(pickleSer, infile, eval_type)
init_time = time.time()
[SPARK-3478] [PySpark] Profile the Python tasks This patch add profiling support for PySpark, it will show the profiling results before the driver exits, here is one example: ``` ============================================================ Profile of RDD<id=3> ============================================================ 5146507 function calls (5146487 primitive calls) in 71.094 seconds Ordered by: internal time, cumulative time ncalls tottime percall cumtime percall filename:lineno(function) 5144576 68.331 0.000 68.331 0.000 statcounter.py:44(merge) 20 2.735 0.137 71.071 3.554 statcounter.py:33(__init__) 20 0.017 0.001 0.017 0.001 {cPickle.dumps} 1024 0.003 0.000 0.003 0.000 t.py:16(<lambda>) 20 0.001 0.000 0.001 0.000 {reduce} 21 0.001 0.000 0.001 0.000 {cPickle.loads} 20 0.001 0.000 0.001 0.000 copy_reg.py:95(_slotnames) 41 0.001 0.000 0.001 0.000 serializers.py:461(read_int) 40 0.001 0.000 0.002 0.000 serializers.py:179(_batched) 62 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects} 20 0.000 0.000 71.072 3.554 rdd.py:863(<lambda>) 20 0.000 0.000 0.001 0.000 serializers.py:198(load_stream) 40/20 0.000 0.000 71.072 3.554 rdd.py:2093(pipeline_func) 41 0.000 0.000 0.002 0.000 serializers.py:130(load_stream) 40 0.000 0.000 71.072 1.777 rdd.py:304(func) 20 0.000 0.000 71.094 3.555 worker.py:82(process) ``` Also, use can show profile result manually by `sc.show_profiles()` or dump it into disk by `sc.dump_profiles(path)`, such as ```python >>> sc._conf.set("spark.python.profile", "true") >>> rdd = sc.parallelize(range(100)).map(str) >>> rdd.count() 100 >>> sc.show_profiles() ============================================================ Profile of RDD<id=1> ============================================================ 284 function calls (276 primitive calls) in 0.001 seconds Ordered by: internal time, cumulative time ncalls tottime percall cumtime percall filename:lineno(function) 4 0.000 0.000 0.000 0.000 serializers.py:198(load_stream) 4 0.000 0.000 0.000 0.000 {reduce} 12/4 0.000 0.000 0.001 0.000 rdd.py:2092(pipeline_func) 4 0.000 0.000 0.000 0.000 {cPickle.loads} 4 0.000 0.000 0.000 0.000 {cPickle.dumps} 104 0.000 0.000 0.000 0.000 rdd.py:852(<genexpr>) 8 0.000 0.000 0.000 0.000 serializers.py:461(read_int) 12 0.000 0.000 0.000 0.000 rdd.py:303(func) ``` The profiling is disabled by default, can be enabled by "spark.python.profile=true". Also, users can dump the results into disks automatically for future analysis, by "spark.python.profile.dump=path_to_dump" This is bugfix of #2351 cc JoshRosen Author: Davies Liu <davies.liu@gmail.com> Closes #2556 from davies/profiler and squashes the following commits: e68df5a [Davies Liu] Merge branch 'master' of github.com:apache/spark into profiler 858e74c [Davies Liu] compatitable with python 2.6 7ef2aa0 [Davies Liu] bugfix, add tests for show_profiles and dump_profiles() 2b0daf2 [Davies Liu] fix docs 7a56c24 [Davies Liu] bugfix cba9463 [Davies Liu] move show_profiles and dump_profiles to SparkContext fb9565b [Davies Liu] Merge branch 'master' of github.com:apache/spark into profiler 116d52a [Davies Liu] Merge branch 'master' of github.com:apache/spark into profiler 09d02c3 [Davies Liu] Merge branch 'master' into profiler c23865c [Davies Liu] Merge branch 'master' into profiler 15d6f18 [Davies Liu] add docs for two configs dadee1a [Davies Liu] add docs string and clear profiles after show or dump 4f8309d [Davies Liu] address comment, add tests 0a5b6eb [Davies Liu] fix Python UDF 4b20494 [Davies Liu] add profile for python
2014-09-30 21:24:57 -04:00
def process():
iterator = deserializer.load_stream(infile)
serializer.dump_stream(func(split_index, iterator), outfile)
if profiler:
profiler.profile(process)
[SPARK-3478] [PySpark] Profile the Python tasks This patch add profiling support for PySpark, it will show the profiling results before the driver exits, here is one example: ``` ============================================================ Profile of RDD<id=3> ============================================================ 5146507 function calls (5146487 primitive calls) in 71.094 seconds Ordered by: internal time, cumulative time ncalls tottime percall cumtime percall filename:lineno(function) 5144576 68.331 0.000 68.331 0.000 statcounter.py:44(merge) 20 2.735 0.137 71.071 3.554 statcounter.py:33(__init__) 20 0.017 0.001 0.017 0.001 {cPickle.dumps} 1024 0.003 0.000 0.003 0.000 t.py:16(<lambda>) 20 0.001 0.000 0.001 0.000 {reduce} 21 0.001 0.000 0.001 0.000 {cPickle.loads} 20 0.001 0.000 0.001 0.000 copy_reg.py:95(_slotnames) 41 0.001 0.000 0.001 0.000 serializers.py:461(read_int) 40 0.001 0.000 0.002 0.000 serializers.py:179(_batched) 62 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects} 20 0.000 0.000 71.072 3.554 rdd.py:863(<lambda>) 20 0.000 0.000 0.001 0.000 serializers.py:198(load_stream) 40/20 0.000 0.000 71.072 3.554 rdd.py:2093(pipeline_func) 41 0.000 0.000 0.002 0.000 serializers.py:130(load_stream) 40 0.000 0.000 71.072 1.777 rdd.py:304(func) 20 0.000 0.000 71.094 3.555 worker.py:82(process) ``` Also, use can show profile result manually by `sc.show_profiles()` or dump it into disk by `sc.dump_profiles(path)`, such as ```python >>> sc._conf.set("spark.python.profile", "true") >>> rdd = sc.parallelize(range(100)).map(str) >>> rdd.count() 100 >>> sc.show_profiles() ============================================================ Profile of RDD<id=1> ============================================================ 284 function calls (276 primitive calls) in 0.001 seconds Ordered by: internal time, cumulative time ncalls tottime percall cumtime percall filename:lineno(function) 4 0.000 0.000 0.000 0.000 serializers.py:198(load_stream) 4 0.000 0.000 0.000 0.000 {reduce} 12/4 0.000 0.000 0.001 0.000 rdd.py:2092(pipeline_func) 4 0.000 0.000 0.000 0.000 {cPickle.loads} 4 0.000 0.000 0.000 0.000 {cPickle.dumps} 104 0.000 0.000 0.000 0.000 rdd.py:852(<genexpr>) 8 0.000 0.000 0.000 0.000 serializers.py:461(read_int) 12 0.000 0.000 0.000 0.000 rdd.py:303(func) ``` The profiling is disabled by default, can be enabled by "spark.python.profile=true". Also, users can dump the results into disks automatically for future analysis, by "spark.python.profile.dump=path_to_dump" This is bugfix of #2351 cc JoshRosen Author: Davies Liu <davies.liu@gmail.com> Closes #2556 from davies/profiler and squashes the following commits: e68df5a [Davies Liu] Merge branch 'master' of github.com:apache/spark into profiler 858e74c [Davies Liu] compatitable with python 2.6 7ef2aa0 [Davies Liu] bugfix, add tests for show_profiles and dump_profiles() 2b0daf2 [Davies Liu] fix docs 7a56c24 [Davies Liu] bugfix cba9463 [Davies Liu] move show_profiles and dump_profiles to SparkContext fb9565b [Davies Liu] Merge branch 'master' of github.com:apache/spark into profiler 116d52a [Davies Liu] Merge branch 'master' of github.com:apache/spark into profiler 09d02c3 [Davies Liu] Merge branch 'master' into profiler c23865c [Davies Liu] Merge branch 'master' into profiler 15d6f18 [Davies Liu] add docs for two configs dadee1a [Davies Liu] add docs string and clear profiles after show or dump 4f8309d [Davies Liu] address comment, add tests 0a5b6eb [Davies Liu] fix Python UDF 4b20494 [Davies Liu] add profile for python
2014-09-30 21:24:57 -04:00
else:
process()
except Exception:
try:
write_int(SpecialLengths.PYTHON_EXCEPTION_THROWN, outfile)
[SPARK-4897] [PySpark] Python 3 support This PR update PySpark to support Python 3 (tested with 3.4). Known issue: unpickle array from Pyrolite is broken in Python 3, those tests are skipped. TODO: ec2/spark-ec2.py is not fully tested with python3. Author: Davies Liu <davies@databricks.com> Author: twneale <twneale@gmail.com> Author: Josh Rosen <joshrosen@databricks.com> Closes #5173 from davies/python3 and squashes the following commits: d7d6323 [Davies Liu] fix tests 6c52a98 [Davies Liu] fix mllib test 99e334f [Davies Liu] update timeout b716610 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 cafd5ec [Davies Liu] adddress comments from @mengxr bf225d7 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 179fc8d [Davies Liu] tuning flaky tests 8c8b957 [Davies Liu] fix ResourceWarning in Python 3 5c57c95 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 4006829 [Davies Liu] fix test 2fc0066 [Davies Liu] add python3 path 71535e9 [Davies Liu] fix xrange and divide 5a55ab4 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 125f12c [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 ed498c8 [Davies Liu] fix compatibility with python 3 820e649 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 e8ce8c9 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 ad7c374 [Davies Liu] fix mllib test and warning ef1fc2f [Davies Liu] fix tests 4eee14a [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 20112ff [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 59bb492 [Davies Liu] fix tests 1da268c [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 ca0fdd3 [Davies Liu] fix code style 9563a15 [Davies Liu] add imap back for python 2 0b1ec04 [Davies Liu] make python examples work with Python 3 d2fd566 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 a716d34 [Davies Liu] test with python 3.4 f1700e8 [Davies Liu] fix test in python3 671b1db [Davies Liu] fix test in python3 692ff47 [Davies Liu] fix flaky test 7b9699f [Davies Liu] invalidate import cache for Python 3.3+ 9c58497 [Davies Liu] fix kill worker 309bfbf [Davies Liu] keep compatibility 5707476 [Davies Liu] cleanup, fix hash of string in 3.3+ 8662d5b [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 f53e1f0 [Davies Liu] fix tests 70b6b73 [Davies Liu] compile ec2/spark_ec2.py in python 3 a39167e [Davies Liu] support customize class in __main__ 814c77b [Davies Liu] run unittests with python 3 7f4476e [Davies Liu] mllib tests passed d737924 [Davies Liu] pass ml tests 375ea17 [Davies Liu] SQL tests pass 6cc42a9 [Davies Liu] rename 431a8de [Davies Liu] streaming tests pass 78901a7 [Davies Liu] fix hash of serializer in Python 3 24b2f2e [Davies Liu] pass all RDD tests 35f48fe [Davies Liu] run future again 1eebac2 [Davies Liu] fix conflict in ec2/spark_ec2.py 6e3c21d [Davies Liu] make cloudpickle work with Python3 2fb2db3 [Josh Rosen] Guard more changes behind sys.version; still doesn't run 1aa5e8f [twneale] Turned out `pickle.DictionaryType is dict` == True, so swapped it out 7354371 [twneale] buffer --> memoryview I'm not super sure if this a valid change, but the 2.7 docs recommend using memoryview over buffer where possible, so hoping it'll work. b69ccdf [twneale] Uses the pure python pickle._Pickler instead of c-extension _pickle.Pickler. It appears pyspark 2.7 uses the pure python pickler as well, so this shouldn't degrade pickling performance (?). f40d925 [twneale] xrange --> range e104215 [twneale] Replaces 2.7 types.InstsanceType with 3.4 `object`....could be horribly wrong depending on how types.InstanceType is used elsewhere in the package--see http://bugs.python.org/issue8206 79de9d0 [twneale] Replaces python2.7 `file` with 3.4 _io.TextIOWrapper 2adb42d [Josh Rosen] Fix up some import differences between Python 2 and 3 854be27 [Josh Rosen] Run `futurize` on Python code: 7c5b4ce [Josh Rosen] Remove Python 3 check in shell.py.
2015-04-16 19:20:57 -04:00
write_with_length(traceback.format_exc().encode("utf-8"), outfile)
except IOError:
# JVM close the socket
pass
except Exception:
# Write the error to stderr if it happened while serializing
[SPARK-4897] [PySpark] Python 3 support This PR update PySpark to support Python 3 (tested with 3.4). Known issue: unpickle array from Pyrolite is broken in Python 3, those tests are skipped. TODO: ec2/spark-ec2.py is not fully tested with python3. Author: Davies Liu <davies@databricks.com> Author: twneale <twneale@gmail.com> Author: Josh Rosen <joshrosen@databricks.com> Closes #5173 from davies/python3 and squashes the following commits: d7d6323 [Davies Liu] fix tests 6c52a98 [Davies Liu] fix mllib test 99e334f [Davies Liu] update timeout b716610 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 cafd5ec [Davies Liu] adddress comments from @mengxr bf225d7 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 179fc8d [Davies Liu] tuning flaky tests 8c8b957 [Davies Liu] fix ResourceWarning in Python 3 5c57c95 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 4006829 [Davies Liu] fix test 2fc0066 [Davies Liu] add python3 path 71535e9 [Davies Liu] fix xrange and divide 5a55ab4 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 125f12c [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 ed498c8 [Davies Liu] fix compatibility with python 3 820e649 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 e8ce8c9 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 ad7c374 [Davies Liu] fix mllib test and warning ef1fc2f [Davies Liu] fix tests 4eee14a [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 20112ff [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 59bb492 [Davies Liu] fix tests 1da268c [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 ca0fdd3 [Davies Liu] fix code style 9563a15 [Davies Liu] add imap back for python 2 0b1ec04 [Davies Liu] make python examples work with Python 3 d2fd566 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 a716d34 [Davies Liu] test with python 3.4 f1700e8 [Davies Liu] fix test in python3 671b1db [Davies Liu] fix test in python3 692ff47 [Davies Liu] fix flaky test 7b9699f [Davies Liu] invalidate import cache for Python 3.3+ 9c58497 [Davies Liu] fix kill worker 309bfbf [Davies Liu] keep compatibility 5707476 [Davies Liu] cleanup, fix hash of string in 3.3+ 8662d5b [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3 f53e1f0 [Davies Liu] fix tests 70b6b73 [Davies Liu] compile ec2/spark_ec2.py in python 3 a39167e [Davies Liu] support customize class in __main__ 814c77b [Davies Liu] run unittests with python 3 7f4476e [Davies Liu] mllib tests passed d737924 [Davies Liu] pass ml tests 375ea17 [Davies Liu] SQL tests pass 6cc42a9 [Davies Liu] rename 431a8de [Davies Liu] streaming tests pass 78901a7 [Davies Liu] fix hash of serializer in Python 3 24b2f2e [Davies Liu] pass all RDD tests 35f48fe [Davies Liu] run future again 1eebac2 [Davies Liu] fix conflict in ec2/spark_ec2.py 6e3c21d [Davies Liu] make cloudpickle work with Python3 2fb2db3 [Josh Rosen] Guard more changes behind sys.version; still doesn't run 1aa5e8f [twneale] Turned out `pickle.DictionaryType is dict` == True, so swapped it out 7354371 [twneale] buffer --> memoryview I'm not super sure if this a valid change, but the 2.7 docs recommend using memoryview over buffer where possible, so hoping it'll work. b69ccdf [twneale] Uses the pure python pickle._Pickler instead of c-extension _pickle.Pickler. It appears pyspark 2.7 uses the pure python pickler as well, so this shouldn't degrade pickling performance (?). f40d925 [twneale] xrange --> range e104215 [twneale] Replaces 2.7 types.InstsanceType with 3.4 `object`....could be horribly wrong depending on how types.InstanceType is used elsewhere in the package--see http://bugs.python.org/issue8206 79de9d0 [twneale] Replaces python2.7 `file` with 3.4 _io.TextIOWrapper 2adb42d [Josh Rosen] Fix up some import differences between Python 2 and 3 854be27 [Josh Rosen] Run `futurize` on Python code: 7c5b4ce [Josh Rosen] Remove Python 3 check in shell.py.
2015-04-16 19:20:57 -04:00
print("PySpark worker failed with exception:", file=sys.stderr)
print(traceback.format_exc(), file=sys.stderr)
exit(-1)
2013-03-10 16:54:46 -04:00
finish_time = time.time()
2013-05-06 19:34:30 -04:00
report_times(outfile, boot_time, init_time, finish_time)
write_long(shuffle.MemoryBytesSpilled, outfile)
write_long(shuffle.DiskBytesSpilled, outfile)
2013-01-20 04:57:44 -05:00
# Mark the beginning of the accumulators section of the output
write_int(SpecialLengths.END_OF_DATA_SECTION, outfile)
write_int(len(_accumulatorRegistry), outfile)
for (aid, accum) in _accumulatorRegistry.items():
pickleSer._write_with_length((aid, accum._value), outfile)
2012-08-10 04:10:02 -04:00
# check end of stream
if read_int(infile) == SpecialLengths.END_OF_STREAM:
write_int(SpecialLengths.END_OF_STREAM, outfile)
else:
# write a different value to tell JVM to not reuse this worker
write_int(SpecialLengths.END_OF_DATA_SECTION, outfile)
exit(-1)
2012-08-10 04:10:02 -04:00
if __name__ == '__main__':
# Read a local port to connect to from stdin
java_port = int(sys.stdin.readline())
sock = socket.socket(socket.AF_INET, socket.SOCK_STREAM)
sock.connect(("127.0.0.1", java_port))
sock_file = sock.makefile("rwb", 65536)
main(sock_file, sock_file)