[SPARK-16462][SPARK-16460][SPARK-15144][SQL] Make CSV cast null values properly

## Problem

CSV in Spark 2.0.0:
-  does not read null values back correctly for certain data types such as `Boolean`, `TimestampType`, `DateType` -- this is a regression comparing to 1.6;
- does not read empty values (specified by `options.nullValue`) as `null`s for `StringType` -- this is compatible with 1.6 but leads to problems like SPARK-16903.

## What changes were proposed in this pull request?

This patch makes changes to read all empty values back as `null`s.

## How was this patch tested?

New test cases.

Author: Liwei Lin <lwlin7@gmail.com>

Closes #14118 from lw-lin/csv-cast-null.
This commit is contained in:
Liwei Lin 2016-09-18 19:25:58 +01:00 committed by Sean Owen
parent 7151011b38
commit 1dbb725dbe
No known key found for this signature in database
GPG key ID: BEB3956D6717BDDC
7 changed files with 94 additions and 84 deletions

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@ -329,7 +329,8 @@ class DataFrameReader(OptionUtils):
being read should be skipped. If None is set, it uses
the default value, ``false``.
:param nullValue: sets the string representation of a null value. If None is set, it uses
the default value, empty string.
the default value, empty string. Since 2.0.1, this ``nullValue`` param
applies to all supported types including the string type.
:param nanValue: sets the string representation of a non-number value. If None is set, it
uses the default value, ``NaN``.
:param positiveInf: sets the string representation of a positive infinity value. If None

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@ -497,7 +497,8 @@ class DataStreamReader(OptionUtils):
being read should be skipped. If None is set, it uses
the default value, ``false``.
:param nullValue: sets the string representation of a null value. If None is set, it uses
the default value, empty string.
the default value, empty string. Since 2.0.1, this ``nullValue`` param
applies to all supported types including the string type.
:param nanValue: sets the string representation of a non-number value. If None is set, it
uses the default value, ``NaN``.
:param positiveInf: sets the string representation of a positive infinity value. If None

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@ -376,7 +376,8 @@ class DataFrameReader private[sql](sparkSession: SparkSession) extends Logging {
* from values being read should be skipped.</li>
* <li>`ignoreTrailingWhiteSpace` (default `false`): defines whether or not trailing
* whitespaces from values being read should be skipped.</li>
* <li>`nullValue` (default empty string): sets the string representation of a null value.</li>
* <li>`nullValue` (default empty string): sets the string representation of a null value. Since
* 2.0.1, this applies to all supported types including the string type.</li>
* <li>`nanValue` (default `NaN`): sets the string representation of a non-number" value.</li>
* <li>`positiveInf` (default `Inf`): sets the string representation of a positive infinity
* value.</li>

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@ -232,66 +232,58 @@ private[csv] object CSVTypeCast {
nullable: Boolean = true,
options: CSVOptions = CSVOptions()): Any = {
castType match {
case _: ByteType => if (datum == options.nullValue && nullable) null else datum.toByte
case _: ShortType => if (datum == options.nullValue && nullable) null else datum.toShort
case _: IntegerType => if (datum == options.nullValue && nullable) null else datum.toInt
case _: LongType => if (datum == options.nullValue && nullable) null else datum.toLong
case _: FloatType =>
if (datum == options.nullValue && nullable) {
null
} else if (datum == options.nanValue) {
Float.NaN
} else if (datum == options.negativeInf) {
Float.NegativeInfinity
} else if (datum == options.positiveInf) {
Float.PositiveInfinity
} else {
Try(datum.toFloat)
.getOrElse(NumberFormat.getInstance(Locale.getDefault).parse(datum).floatValue())
}
case _: DoubleType =>
if (datum == options.nullValue && nullable) {
null
} else if (datum == options.nanValue) {
Double.NaN
} else if (datum == options.negativeInf) {
Double.NegativeInfinity
} else if (datum == options.positiveInf) {
Double.PositiveInfinity
} else {
Try(datum.toDouble)
.getOrElse(NumberFormat.getInstance(Locale.getDefault).parse(datum).doubleValue())
}
case _: BooleanType => datum.toBoolean
case dt: DecimalType =>
if (datum == options.nullValue && nullable) {
null
} else {
if (nullable && datum == options.nullValue) {
null
} else {
castType match {
case _: ByteType => datum.toByte
case _: ShortType => datum.toShort
case _: IntegerType => datum.toInt
case _: LongType => datum.toLong
case _: FloatType =>
datum match {
case options.nanValue => Float.NaN
case options.negativeInf => Float.NegativeInfinity
case options.positiveInf => Float.PositiveInfinity
case _ =>
Try(datum.toFloat)
.getOrElse(NumberFormat.getInstance(Locale.getDefault).parse(datum).floatValue())
}
case _: DoubleType =>
datum match {
case options.nanValue => Double.NaN
case options.negativeInf => Double.NegativeInfinity
case options.positiveInf => Double.PositiveInfinity
case _ =>
Try(datum.toDouble)
.getOrElse(NumberFormat.getInstance(Locale.getDefault).parse(datum).doubleValue())
}
case _: BooleanType => datum.toBoolean
case dt: DecimalType =>
val value = new BigDecimal(datum.replaceAll(",", ""))
Decimal(value, dt.precision, dt.scale)
}
case _: TimestampType =>
// This one will lose microseconds parts.
// See https://issues.apache.org/jira/browse/SPARK-10681.
Try(options.timestampFormat.parse(datum).getTime * 1000L)
.getOrElse {
// If it fails to parse, then tries the way used in 2.0 and 1.x for backwards
// compatibility.
DateTimeUtils.stringToTime(datum).getTime * 1000L
}
case _: DateType =>
// This one will lose microseconds parts.
// See https://issues.apache.org/jira/browse/SPARK-10681.x
Try(DateTimeUtils.millisToDays(options.dateFormat.parse(datum).getTime))
.getOrElse {
// If it fails to parse, then tries the way used in 2.0 and 1.x for backwards
// compatibility.
DateTimeUtils.millisToDays(DateTimeUtils.stringToTime(datum).getTime)
}
case _: StringType => UTF8String.fromString(datum)
case udt: UserDefinedType[_] => castTo(datum, udt.sqlType, nullable, options)
case _ => throw new RuntimeException(s"Unsupported type: ${castType.typeName}")
case _: TimestampType =>
// This one will lose microseconds parts.
// See https://issues.apache.org/jira/browse/SPARK-10681.
Try(options.timestampFormat.parse(datum).getTime * 1000L)
.getOrElse {
// If it fails to parse, then tries the way used in 2.0 and 1.x for backwards
// compatibility.
DateTimeUtils.stringToTime(datum).getTime * 1000L
}
case _: DateType =>
// This one will lose microseconds parts.
// See https://issues.apache.org/jira/browse/SPARK-10681.x
Try(DateTimeUtils.millisToDays(options.dateFormat.parse(datum).getTime))
.getOrElse {
// If it fails to parse, then tries the way used in 2.0 and 1.x for backwards
// compatibility.
DateTimeUtils.millisToDays(DateTimeUtils.stringToTime(datum).getTime)
}
case _: StringType => UTF8String.fromString(datum)
case udt: UserDefinedType[_] => castTo(datum, udt.sqlType, nullable, options)
case _ => throw new RuntimeException(s"Unsupported type: ${castType.typeName}")
}
}
}

View file

@ -232,7 +232,8 @@ final class DataStreamReader private[sql](sparkSession: SparkSession) extends Lo
* from values being read should be skipped.</li>
* <li>`ignoreTrailingWhiteSpace` (default `false`): defines whether or not trailing
* whitespaces from values being read should be skipped.</li>
* <li>`nullValue` (default empty string): sets the string representation of a null value.</li>
* <li>`nullValue` (default empty string): sets the string representation of a null value. Since
* 2.0.1, this applies to all supported types including the string type.</li>
* <li>`nanValue` (default `NaN`): sets the string representation of a non-number" value.</li>
* <li>`positiveInf` (default `Inf`): sets the string representation of a positive infinity
* value.</li>

View file

@ -554,7 +554,7 @@ class CSVSuite extends QueryTest with SharedSQLContext with SQLTestUtils {
verifyCars(cars, withHeader = true, checkValues = false)
val results = cars.collect()
assert(results(0).toSeq === Array(2012, "Tesla", "S", "null", "null"))
assert(results(0).toSeq === Array(2012, "Tesla", "S", null, null))
assert(results(2).toSeq === Array(null, "Chevy", "Volt", null, null))
}

View file

@ -68,16 +68,46 @@ class CSVTypeCastSuite extends SparkFunSuite {
}
test("Nullable types are handled") {
assert(CSVTypeCast.castTo("", IntegerType, nullable = true, CSVOptions()) == null)
assertNull(
CSVTypeCast.castTo("-", ByteType, nullable = true, CSVOptions("nullValue", "-")))
assertNull(
CSVTypeCast.castTo("-", ShortType, nullable = true, CSVOptions("nullValue", "-")))
assertNull(
CSVTypeCast.castTo("-", IntegerType, nullable = true, CSVOptions("nullValue", "-")))
assertNull(
CSVTypeCast.castTo("-", LongType, nullable = true, CSVOptions("nullValue", "-")))
assertNull(
CSVTypeCast.castTo("-", FloatType, nullable = true, CSVOptions("nullValue", "-")))
assertNull(
CSVTypeCast.castTo("-", DoubleType, nullable = true, CSVOptions("nullValue", "-")))
assertNull(
CSVTypeCast.castTo("-", BooleanType, nullable = true, CSVOptions("nullValue", "-")))
assertNull(
CSVTypeCast.castTo("-", DecimalType.DoubleDecimal, true, CSVOptions("nullValue", "-")))
assertNull(
CSVTypeCast.castTo("-", TimestampType, nullable = true, CSVOptions("nullValue", "-")))
assertNull(
CSVTypeCast.castTo("-", DateType, nullable = true, CSVOptions("nullValue", "-")))
assertNull(
CSVTypeCast.castTo("-", StringType, nullable = true, CSVOptions("nullValue", "-")))
}
test("String type should always return the same as the input") {
assert(
CSVTypeCast.castTo("", StringType, nullable = true, CSVOptions()) ==
UTF8String.fromString(""))
test("String type should also respect `nullValue`") {
assertNull(
CSVTypeCast.castTo("", StringType, nullable = true, CSVOptions()))
assert(
CSVTypeCast.castTo("", StringType, nullable = false, CSVOptions()) ==
UTF8String.fromString(""))
assert(
CSVTypeCast.castTo("", StringType, nullable = true, CSVOptions("nullValue", "null")) ==
UTF8String.fromString(""))
assert(
CSVTypeCast.castTo("", StringType, nullable = false, CSVOptions("nullValue", "null")) ==
UTF8String.fromString(""))
assertNull(
CSVTypeCast.castTo(null, StringType, nullable = true, CSVOptions("nullValue", "null")))
}
test("Throws exception for empty string with non null type") {
@ -170,20 +200,4 @@ class CSVTypeCastSuite extends SparkFunSuite {
assert(doubleVal2 == Double.PositiveInfinity)
}
test("Type-specific null values are used for casting") {
assertNull(
CSVTypeCast.castTo("-", ByteType, nullable = true, CSVOptions("nullValue", "-")))
assertNull(
CSVTypeCast.castTo("-", ShortType, nullable = true, CSVOptions("nullValue", "-")))
assertNull(
CSVTypeCast.castTo("-", IntegerType, nullable = true, CSVOptions("nullValue", "-")))
assertNull(
CSVTypeCast.castTo("-", LongType, nullable = true, CSVOptions("nullValue", "-")))
assertNull(
CSVTypeCast.castTo("-", FloatType, nullable = true, CSVOptions("nullValue", "-")))
assertNull(
CSVTypeCast.castTo("-", DoubleType, nullable = true, CSVOptions("nullValue", "-")))
assertNull(
CSVTypeCast.castTo("-", DecimalType.DoubleDecimal, true, CSVOptions("nullValue", "-")))
}
}