[SPARK-35788][SS] Metrics support for RocksDB instance

### What changes were proposed in this pull request?
Add more metrics for the RocksDB instance. We transform the native states from RocksDB.

### Why are the changes needed?
Improve the usability with more metrics for RocksDB instance.

### Does this PR introduce _any_ user-facing change?
No.

### How was this patch tested?
Existing tests.

Closes #32934 from xuanyuanking/SPARK-35788.

Authored-by: Yuanjian Li <yuanjian.li@databricks.com>
Signed-off-by: Jungtaek Lim <kabhwan.opensource@gmail.com>
(cherry picked from commit 9544277b0a)
Signed-off-by: Jungtaek Lim <kabhwan.opensource@gmail.com>

sql/core/src/main/scala/org/apache/spark/sql/execution/streaming/state/RocksDB.scala

@@ -26,6 +26,8 @@ import scala.ref.WeakReference
 import scala.util.Try
 
 import org.apache.hadoop.conf.Configuration
+import org.json4s.NoTypeHints
+import org.json4s.jackson.Serialization
 import org.rocksdb.{RocksDB => NativeRocksDB, _}
 
 import org.apache.spark.TaskContext
@@ -72,6 +74,7 @@ class RocksDB(
   dbOptions.setTableFormatConfig(tableFormatConfig)
   private val dbLogger = createLogger() // for forwarding RocksDB native logs to log4j
   dbOptions.setStatistics(new Statistics())
+  private val nativeStats = dbOptions.statistics()
 
   private val workingDir = createTempDir("workingDir")
   private val fileManager = new RocksDBFileManager(
@@ -84,6 +87,7 @@ class RocksDB(
   @volatile private var loadedVersion = -1L   // -1 = nothing valid is loaded
   @volatile private var numKeysOnLoadedVersion = 0L
   @volatile private var numKeysOnWritingVersion = 0L
+  @volatile private var fileManagerMetrics = RocksDBFileManagerMetrics.EMPTY_METRICS
 
   @GuardedBy("acquireLock")
   @volatile private var acquiredThreadInfo: AcquiredThreadInfo = _
@@ -105,6 +109,7 @@ class RocksDB(
         numKeysOnWritingVersion = metadata.numKeys
         numKeysOnLoadedVersion = metadata.numKeys
         loadedVersion = version
+        fileManagerMetrics = fileManager.latestLoadCheckpointMetrics
       }
       writeBatch.clear()
       logInfo(s"Loaded $version")
@@ -223,6 +228,7 @@ class RocksDB(
       }
       numKeysOnLoadedVersion = numKeysOnWritingVersion
       loadedVersion = newVersion
+      fileManagerMetrics = fileManager.latestSaveCheckpointMetrics
       commitLatencyMs ++= Map(
         "writeBatch" -> writeTimeMs,
         "flush" -> flushTimeMs,
@@ -231,6 +237,7 @@ class RocksDB(
         "checkpoint" -> checkpointTimeMs,
         "fileSync" -> fileSyncTimeMs
       )
+      logInfo(s"Committed $newVersion, stats = ${metrics.json}")
       loadedVersion
     } catch {
       case t: Throwable =>
@@ -283,6 +290,30 @@ class RocksDB(
   /** Get the latest version available in the DFS */
   def getLatestVersion(): Long = fileManager.getLatestVersion()
 
+  /** Get current instantaneous statistics */
+  def metrics: RocksDBMetrics = {
+    import HistogramType._
+    val totalSSTFilesBytes = getDBProperty("rocksdb.total-sst-files-size")
+    val readerMemUsage = getDBProperty("rocksdb.estimate-table-readers-mem")
+    val memTableMemUsage = getDBProperty("rocksdb.size-all-mem-tables")
+    val nativeOps = Seq("get" -> DB_GET, "put" -> DB_WRITE).toMap
+    val nativeOpsLatencyMicros = nativeOps.mapValues { typ =>
+      RocksDBNativeHistogram(nativeStats.getHistogramData(typ))
+    }
+
+    RocksDBMetrics(
+      numKeysOnLoadedVersion,
+      numKeysOnWritingVersion,
+      readerMemUsage + memTableMemUsage,
+      totalSSTFilesBytes,
+      nativeOpsLatencyMicros.toMap,
+      commitLatencyMs,
+      bytesCopied = fileManagerMetrics.bytesCopied,
+      filesCopied = fileManagerMetrics.filesCopied,
+      filesReused = fileManagerMetrics.filesReused,
+      zipFileBytesUncompressed = fileManagerMetrics.zipFileBytesUncompressed)
+  }
+
   private def acquire(): Unit = acquireLock.synchronized {
     val newAcquiredThreadInfo = AcquiredThreadInfo()
     val waitStartTime = System.currentTimeMillis
@@ -314,6 +345,10 @@ class RocksDB(
     acquireLock.notifyAll()
   }
 
+  private def getDBProperty(property: String): Long = {
+    db.getProperty(property).toLong
+  }
+
   private def openDB(): Unit = {
     assert(db == null)
     db = NativeRocksDB.open(dbOptions, workingDir.toString)
@@ -388,7 +423,6 @@ class ByteArrayPair(var key: Array[Byte] = null, var value: Array[Byte] = null)
 
 /**
  * Configurations for optimizing RocksDB
- *
  * @param compactOnCommit Whether to compact RocksDB data before commit / checkpointing
  */
 case class RocksDBConf(
@@ -442,6 +476,42 @@ object RocksDBConf {
   def apply(): RocksDBConf = apply(new StateStoreConf())
 }
 
+/** Class to represent stats from each commit. */
+case class RocksDBMetrics(
+    numCommittedKeys: Long,
+    numUncommittedKeys: Long,
+    memUsageBytes: Long,
+    totalSSTFilesBytes: Long,
+    nativeOpsLatencyMicros: Map[String, RocksDBNativeHistogram],
+    lastCommitLatencyMs: Map[String, Long],
+    filesCopied: Long,
+    bytesCopied: Long,
+    filesReused: Long,
+    zipFileBytesUncompressed: Option[Long]) {
+  def json: String = Serialization.write(this)(RocksDBMetrics.format)
+}
+
+object RocksDBMetrics {
+  val format = Serialization.formats(NoTypeHints)
+}
+
+/** Class to wrap RocksDB's native histogram */
+case class RocksDBNativeHistogram(
+    avg: Double, stddev: Double, median: Double, p95: Double, p99: Double) {
+  def json: String = Serialization.write(this)(RocksDBMetrics.format)
+}
+
+object RocksDBNativeHistogram {
+  def apply(nativeHist: HistogramData): RocksDBNativeHistogram = {
+    RocksDBNativeHistogram(
+      nativeHist.getAverage,
+      nativeHist.getStandardDeviation,
+      nativeHist.getMedian,
+      nativeHist.getPercentile95,
+      nativeHist.getPercentile99)
+  }
+}
+
 case class AcquiredThreadInfo() {
   val threadRef: WeakReference[Thread] = new WeakReference[Thread](Thread.currentThread())
   val tc: TaskContext = TaskContext.get()

sql/core/src/main/scala/org/apache/spark/sql/execution/streaming/state/RocksDBFileManager.scala

@@ -29,6 +29,7 @@ import scala.collection.mutable
 
 import com.fasterxml.jackson.annotation.JsonInclude.Include
 import com.fasterxml.jackson.databind.{DeserializationFeature, ObjectMapper}
+import com.fasterxml.jackson.databind.annotation.JsonDeserialize
 import com.fasterxml.jackson.module.scala.{DefaultScalaModule, ScalaObjectMapper}
 import org.apache.commons.io.{FilenameUtils, IOUtils}
 import org.apache.hadoop.conf.Configuration
@@ -134,6 +135,22 @@ class RocksDBFileManager(
     override def accept(path: Path): Boolean = path.toString.endsWith(".zip")
   }
 
+  /**
+   * Metrics for loading checkpoint from DFS. Every loadCheckpointFromDFS call will update this
+   * metrics, so this effectively records the latest metrics.
+   */
+  @volatile private var loadCheckpointMetrics = RocksDBFileManagerMetrics.EMPTY_METRICS
+
+  /**
+   * Metrics for saving checkpoint to DFS. Every saveCheckpointToDFS call will update this
+   * metrics, so this effectively records the latest metrics.
+   */
+  @volatile private var saveCheckpointMetrics = RocksDBFileManagerMetrics.EMPTY_METRICS
+
+  def latestLoadCheckpointMetrics: RocksDBFileManagerMetrics = loadCheckpointMetrics
+
+  def latestSaveCheckpointMetrics: RocksDBFileManagerMetrics = saveCheckpointMetrics
+
   /** Save all the files in given local checkpoint directory as a committed version in DFS */
   def saveCheckpointToDfs(checkpointDir: File, version: Long, numKeys: Long): Unit = {
     logFilesInDir(checkpointDir, s"Saving checkpoint files for version $version")
@@ -336,6 +353,11 @@ class RocksDBFileManager(
       s" DFS for version $version. $filesReused files reused without copying.")
     versionToRocksDBFiles.put(version, immutableFiles)
 
+    saveCheckpointMetrics = RocksDBFileManagerMetrics(
+      bytesCopied = bytesCopied,
+      filesCopied = filesCopied,
+      filesReused = filesReused)
+
     immutableFiles
   }
 
@@ -387,6 +409,11 @@ class RocksDBFileManager(
     }
     logInfo(s"Copied $filesCopied files ($bytesCopied bytes) from DFS to local with " +
       s"$filesReused files reused.")
+
+    loadCheckpointMetrics = RocksDBFileManagerMetrics(
+      bytesCopied = bytesCopied,
+      filesCopied = filesCopied,
+      filesReused = filesReused)
   }
 
   /** Get the SST files required for a version from the version zip file in DFS */
@@ -420,6 +447,9 @@ class RocksDBFileManager(
       }
       zout.close()  // so that any error in closing also cancels the output stream
       logInfo(s"Zipped $totalBytes bytes (before compression) to $filesStr")
+      // The other fields saveCheckpointMetrics should have been filled
+      saveCheckpointMetrics =
+        saveCheckpointMetrics.copy(zipFileBytesUncompressed = Some(totalBytes))
     } catch {
       case e: Exception =>
         // Cancel the actual output stream first, so that zout.close() does not write the file
@@ -486,6 +516,23 @@ class RocksDBFileManager(
   }
 }
 
+/**
+ * Metrics regarding RocksDB file sync between local and DFS.
+ */
+case class RocksDBFileManagerMetrics(
+    filesCopied: Long,
+    bytesCopied: Long,
+    filesReused: Long,
+    @JsonDeserialize(contentAs = classOf[java.lang.Long])
+    zipFileBytesUncompressed: Option[Long] = None)
+
+/**
+ * Metrics to return when requested but no operation has been performed.
+ */
+object RocksDBFileManagerMetrics {
+  val EMPTY_METRICS = RocksDBFileManagerMetrics(0L, 0L, 0L, None)
+}
+
 /**
  * Classes to represent metadata of checkpoints saved to DFS. Since this is converted to JSON, any
  * changes to this MUST be backward-compatible.