SPARK-3811 [CORE] More robust / standard Utils.deleteRecursively, Utils.createTempDir
I noticed a few issues with how temp directories are created and deleted: *Minor* * Guava's `Files.createTempDir()` plus `File.deleteOnExit()` is used in many tests to make a temp dir, but `Utils.createTempDir()` seems to be the standard Spark mechanism * Call to `File.deleteOnExit()` could be pushed into `Utils.createTempDir()` as well, along with this replacement * _I messed up the message in an exception in `Utils` in SPARK-3794; fixed here_ *Bit Less Minor* * `Utils.deleteRecursively()` fails immediately if any `IOException` occurs, instead of trying to delete any remaining files and subdirectories. I've observed this leave temp dirs around. I suggest changing it to continue in the face of an exception and throw one of the possibly several exceptions that occur at the end. * `Utils.createTempDir()` will add a JVM shutdown hook every time the method is called. Even if the subdir is the parent of another parent dir, since this check is inside the hook. However `Utils` manages a set of all dirs to delete on shutdown already, called `shutdownDeletePaths`. A single hook can be registered to delete all of these on exit. This is how Tachyon temp paths are cleaned up in `TachyonBlockManager`. I noticed a few other things that might be changed but wanted to ask first: * Shouldn't the set of dirs to delete be `File`, not just `String` paths? * `Utils` manages the set of `TachyonFile` that have been registered for deletion, but the shutdown hook is managed in `TachyonBlockManager`. Should this logic not live together, and not in `Utils`? it's more specific to Tachyon, and looks a slight bit odd to import in such a generic place. Author: Sean Owen <sowen@cloudera.com> Closes #2670 from srowen/SPARK-3811 and squashes the following commits: 071ae60 [Sean Owen] Update per @vanzin's review da0146d [Sean Owen] Make Utils.deleteRecursively try to delete all paths even when an exception occurs; use one shutdown hook instead of one per method call to delete temp dirs 3a0faa4 [Sean Owen] Standardize on Utils.createTempDir instead of Files.createTempDir
This commit is contained in:
parent
2837bf8548
commit
363baacade
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@ -26,6 +26,8 @@ import scala.collection.JavaConversions._
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import javax.tools.{JavaFileObject, SimpleJavaFileObject, ToolProvider}
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import com.google.common.io.Files
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import org.apache.spark.util.Utils
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/**
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* Utilities for tests. Included in main codebase since it's used by multiple
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* projects.
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@ -42,8 +44,7 @@ private[spark] object TestUtils {
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* in order to avoid interference between tests.
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*/
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def createJarWithClasses(classNames: Seq[String], value: String = ""): URL = {
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val tempDir = Files.createTempDir()
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tempDir.deleteOnExit()
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val tempDir = Utils.createTempDir()
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val files = for (name <- classNames) yield createCompiledClass(name, tempDir, value)
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val jarFile = new File(tempDir, "testJar-%s.jar".format(System.currentTimeMillis()))
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createJar(files, jarFile)
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@ -168,6 +168,20 @@ private[spark] object Utils extends Logging {
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private val shutdownDeletePaths = new scala.collection.mutable.HashSet[String]()
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private val shutdownDeleteTachyonPaths = new scala.collection.mutable.HashSet[String]()
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// Add a shutdown hook to delete the temp dirs when the JVM exits
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Runtime.getRuntime.addShutdownHook(new Thread("delete Spark temp dirs") {
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override def run(): Unit = Utils.logUncaughtExceptions {
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logDebug("Shutdown hook called")
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shutdownDeletePaths.foreach { dirPath =>
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try {
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Utils.deleteRecursively(new File(dirPath))
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} catch {
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case e: Exception => logError(s"Exception while deleting Spark temp dir: $dirPath", e)
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}
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}
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}
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})
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// Register the path to be deleted via shutdown hook
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def registerShutdownDeleteDir(file: File) {
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val absolutePath = file.getAbsolutePath()
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@ -252,14 +266,6 @@ private[spark] object Utils extends Logging {
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}
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registerShutdownDeleteDir(dir)
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// Add a shutdown hook to delete the temp dir when the JVM exits
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Runtime.getRuntime.addShutdownHook(new Thread("delete Spark temp dir " + dir) {
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override def run() {
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// Attempt to delete if some patch which is parent of this is not already registered.
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if (! hasRootAsShutdownDeleteDir(dir)) Utils.deleteRecursively(dir)
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}
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})
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dir
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}
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@ -666,15 +672,30 @@ private[spark] object Utils extends Logging {
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*/
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def deleteRecursively(file: File) {
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if (file != null) {
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if (file.isDirectory() && !isSymlink(file)) {
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for (child <- listFilesSafely(file)) {
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deleteRecursively(child)
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try {
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if (file.isDirectory && !isSymlink(file)) {
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var savedIOException: IOException = null
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for (child <- listFilesSafely(file)) {
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try {
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deleteRecursively(child)
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} catch {
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// In case of multiple exceptions, only last one will be thrown
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case ioe: IOException => savedIOException = ioe
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}
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}
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if (savedIOException != null) {
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throw savedIOException
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}
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shutdownDeletePaths.synchronized {
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shutdownDeletePaths.remove(file.getAbsolutePath)
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}
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}
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}
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if (!file.delete()) {
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// Delete can also fail if the file simply did not exist
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if (file.exists()) {
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throw new IOException("Failed to delete: " + file.getAbsolutePath)
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} finally {
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if (!file.delete()) {
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// Delete can also fail if the file simply did not exist
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if (file.exists()) {
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throw new IOException("Failed to delete: " + file.getAbsolutePath)
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}
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}
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}
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}
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@ -713,7 +734,7 @@ private[spark] object Utils extends Logging {
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*/
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def doesDirectoryContainAnyNewFiles(dir: File, cutoff: Long): Boolean = {
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if (!dir.isDirectory) {
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throw new IllegalArgumentException("$dir is not a directory!")
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throw new IllegalArgumentException(s"$dir is not a directory!")
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}
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val filesAndDirs = dir.listFiles()
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val cutoffTimeInMillis = System.currentTimeMillis - (cutoff * 1000)
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@ -20,7 +20,6 @@ package org.apache.spark
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import java.io._
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import java.util.jar.{JarEntry, JarOutputStream}
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import com.google.common.io.Files
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import org.scalatest.FunSuite
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import org.apache.spark.SparkContext._
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@ -41,8 +40,7 @@ class FileServerSuite extends FunSuite with LocalSparkContext {
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override def beforeAll() {
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super.beforeAll()
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tmpDir = Files.createTempDir()
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tmpDir.deleteOnExit()
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tmpDir = Utils.createTempDir()
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val testTempDir = new File(tmpDir, "test")
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testTempDir.mkdir()
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@ -21,7 +21,6 @@ import java.io.{File, FileWriter}
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import scala.io.Source
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import com.google.common.io.Files
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import org.apache.hadoop.io._
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import org.apache.hadoop.io.compress.DefaultCodec
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import org.apache.hadoop.mapred.{JobConf, FileAlreadyExistsException, FileSplit, TextInputFormat, TextOutputFormat}
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@ -39,8 +38,7 @@ class FileSuite extends FunSuite with LocalSparkContext {
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override def beforeEach() {
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super.beforeEach()
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tempDir = Files.createTempDir()
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tempDir.deleteOnExit()
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tempDir = Utils.createTempDir()
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}
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override def afterEach() {
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@ -26,7 +26,6 @@ import org.apache.spark.deploy.SparkSubmit._
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import org.apache.spark.util.Utils
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import org.scalatest.FunSuite
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import org.scalatest.Matchers
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import com.google.common.io.Files
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class SparkSubmitSuite extends FunSuite with Matchers {
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def beforeAll() {
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@ -332,7 +331,7 @@ class SparkSubmitSuite extends FunSuite with Matchers {
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}
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def forConfDir(defaults: Map[String, String]) (f: String => Unit) = {
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val tmpDir = Files.createTempDir()
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val tmpDir = Utils.createTempDir()
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val defaultsConf = new File(tmpDir.getAbsolutePath, "spark-defaults.conf")
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val writer = new OutputStreamWriter(new FileOutputStream(defaultsConf))
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@ -23,8 +23,6 @@ import java.io.FileOutputStream
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import scala.collection.immutable.IndexedSeq
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import com.google.common.io.Files
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import org.scalatest.BeforeAndAfterAll
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import org.scalatest.FunSuite
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@ -66,9 +64,7 @@ class WholeTextFileRecordReaderSuite extends FunSuite with BeforeAndAfterAll {
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* 3) Does the contents be the same.
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*/
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test("Correctness of WholeTextFileRecordReader.") {
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val dir = Files.createTempDir()
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dir.deleteOnExit()
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val dir = Utils.createTempDir()
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println(s"Local disk address is ${dir.toString}.")
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WholeTextFileRecordReaderSuite.files.foreach { case (filename, contents) =>
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@ -24,13 +24,14 @@ import org.apache.hadoop.util.Progressable
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import scala.collection.mutable.{ArrayBuffer, HashSet}
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import scala.util.Random
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import com.google.common.io.Files
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import org.apache.hadoop.conf.{Configurable, Configuration}
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import org.apache.hadoop.mapreduce.{JobContext => NewJobContext, OutputCommitter => NewOutputCommitter,
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OutputFormat => NewOutputFormat, RecordWriter => NewRecordWriter,
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TaskAttemptContext => NewTaskAttempContext}
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import org.apache.spark.{Partitioner, SharedSparkContext}
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import org.apache.spark.SparkContext._
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import org.apache.spark.util.Utils
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import org.scalatest.FunSuite
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class PairRDDFunctionsSuite extends FunSuite with SharedSparkContext {
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@ -381,14 +382,16 @@ class PairRDDFunctionsSuite extends FunSuite with SharedSparkContext {
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}
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test("zero-partition RDD") {
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val emptyDir = Files.createTempDir()
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emptyDir.deleteOnExit()
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val file = sc.textFile(emptyDir.getAbsolutePath)
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assert(file.partitions.size == 0)
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assert(file.collect().toList === Nil)
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// Test that a shuffle on the file works, because this used to be a bug
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assert(file.map(line => (line, 1)).reduceByKey(_ + _).collect().toList === Nil)
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emptyDir.delete()
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val emptyDir = Utils.createTempDir()
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try {
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val file = sc.textFile(emptyDir.getAbsolutePath)
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assert(file.partitions.isEmpty)
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assert(file.collect().toList === Nil)
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// Test that a shuffle on the file works, because this used to be a bug
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assert(file.map(line => (line, 1)).reduceByKey(_ + _).collect().toList === Nil)
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} finally {
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Utils.deleteRecursively(emptyDir)
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}
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}
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test("keys and values") {
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@ -20,7 +20,6 @@ package org.apache.spark.scheduler
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import scala.collection.mutable
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import scala.io.Source
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import com.google.common.io.Files
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import org.apache.hadoop.fs.{FileStatus, Path}
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import org.json4s.jackson.JsonMethods._
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import org.scalatest.{BeforeAndAfter, FunSuite}
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@ -51,8 +50,7 @@ class EventLoggingListenerSuite extends FunSuite with BeforeAndAfter {
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private var logDirPath: Path = _
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before {
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testDir = Files.createTempDir()
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testDir.deleteOnExit()
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testDir = Utils.createTempDir()
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logDirPath = Utils.getFilePath(testDir, "spark-events")
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}
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@ -19,7 +19,6 @@ package org.apache.spark.scheduler
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import java.io.{File, PrintWriter}
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import com.google.common.io.Files
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import org.json4s.jackson.JsonMethods._
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import org.scalatest.{BeforeAndAfter, FunSuite}
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@ -39,8 +38,7 @@ class ReplayListenerSuite extends FunSuite with BeforeAndAfter {
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private var testDir: File = _
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before {
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testDir = Files.createTempDir()
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testDir.deleteOnExit()
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testDir = Utils.createTempDir()
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}
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after {
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@ -19,22 +19,13 @@ package org.apache.spark.storage
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import java.io.{File, FileWriter}
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import org.apache.spark.network.nio.NioBlockTransferService
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import org.apache.spark.shuffle.hash.HashShuffleManager
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import scala.collection.mutable
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import scala.language.reflectiveCalls
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import akka.actor.Props
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import com.google.common.io.Files
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import org.mockito.Mockito.{mock, when}
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import org.scalatest.{BeforeAndAfterAll, BeforeAndAfterEach, FunSuite}
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import org.apache.spark.SparkConf
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import org.apache.spark.scheduler.LiveListenerBus
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import org.apache.spark.serializer.JavaSerializer
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import org.apache.spark.util.{AkkaUtils, Utils}
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import org.apache.spark.executor.ShuffleWriteMetrics
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import org.apache.spark.util.Utils
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class DiskBlockManagerSuite extends FunSuite with BeforeAndAfterEach with BeforeAndAfterAll {
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private val testConf = new SparkConf(false)
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override def beforeAll() {
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super.beforeAll()
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rootDir0 = Files.createTempDir()
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rootDir0.deleteOnExit()
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rootDir1 = Files.createTempDir()
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rootDir1.deleteOnExit()
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rootDir0 = Utils.createTempDir()
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rootDir1 = Utils.createTempDir()
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rootDirs = rootDir0.getAbsolutePath + "," + rootDir1.getAbsolutePath
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}
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@ -21,7 +21,6 @@ import java.io.{File, IOException}
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import scala.io.Source
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import com.google.common.io.Files
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import org.apache.hadoop.fs.Path
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import org.scalatest.{BeforeAndAfter, FunSuite}
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@ -44,7 +43,7 @@ class FileLoggerSuite extends FunSuite with BeforeAndAfter {
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private var logDirPathString: String = _
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before {
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testDir = Files.createTempDir()
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testDir = Utils.createTempDir()
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logDirPath = Utils.getFilePath(testDir, "test-file-logger")
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logDirPathString = logDirPath.toString
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}
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@ -112,7 +112,7 @@ class UtilsSuite extends FunSuite {
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}
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test("reading offset bytes of a file") {
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val tmpDir2 = Files.createTempDir()
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val tmpDir2 = Utils.createTempDir()
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tmpDir2.deleteOnExit()
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val f1Path = tmpDir2 + "/f1"
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val f1 = new FileOutputStream(f1Path)
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}
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test("reading offset bytes across multiple files") {
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val tmpDir = Files.createTempDir()
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val tmpDir = Utils.createTempDir()
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tmpDir.deleteOnExit()
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val files = (1 to 3).map(i => new File(tmpDir, i.toString))
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Files.write("0123456789", files(0), Charsets.UTF_8)
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}
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}
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test("deleteRecursively") {
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val tempDir1 = Utils.createTempDir()
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assert(tempDir1.exists())
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Utils.deleteRecursively(tempDir1)
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assert(!tempDir1.exists())
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val tempDir2 = Utils.createTempDir()
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val tempFile1 = new File(tempDir2, "foo.txt")
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Files.touch(tempFile1)
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assert(tempFile1.exists())
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Utils.deleteRecursively(tempFile1)
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assert(!tempFile1.exists())
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val tempDir3 = new File(tempDir2, "subdir")
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assert(tempDir3.mkdir())
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val tempFile2 = new File(tempDir3, "bar.txt")
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Files.touch(tempFile2)
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assert(tempFile2.exists())
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Utils.deleteRecursively(tempDir2)
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assert(!tempDir2.exists())
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assert(!tempDir3.exists())
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assert(!tempFile2.exists())
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}
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}
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@ -67,8 +67,7 @@ class MLUtilsSuite extends FunSuite with LocalSparkContext {
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|0
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|0 2:4.0 4:5.0 6:6.0
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""".stripMargin
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val tempDir = Files.createTempDir()
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tempDir.deleteOnExit()
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val tempDir = Utils.createTempDir()
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val file = new File(tempDir.getPath, "part-00000")
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Files.write(lines, file, Charsets.US_ASCII)
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val path = tempDir.toURI.toString
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LabeledPoint(1.1, Vectors.sparse(3, Seq((0, 1.23), (2, 4.56)))),
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LabeledPoint(0.0, Vectors.dense(1.01, 2.02, 3.03))
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), 2)
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val tempDir = Files.createTempDir()
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val tempDir = Utils.createTempDir()
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val outputDir = new File(tempDir, "output")
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MLUtils.saveAsLibSVMFile(examples, outputDir.toURI.toString)
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val lines = outputDir.listFiles()
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@ -166,7 +165,7 @@ class MLUtilsSuite extends FunSuite with LocalSparkContext {
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Vectors.sparse(2, Array(1), Array(-1.0)),
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Vectors.dense(0.0, 1.0)
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), 2)
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val tempDir = Files.createTempDir()
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val tempDir = Utils.createTempDir()
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val outputDir = new File(tempDir, "vectors")
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val path = outputDir.toURI.toString
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vectors.saveAsTextFile(path)
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@ -181,7 +180,7 @@ class MLUtilsSuite extends FunSuite with LocalSparkContext {
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LabeledPoint(0.0, Vectors.sparse(2, Array(1), Array(-1.0))),
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LabeledPoint(1.0, Vectors.dense(0.0, 1.0))
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), 2)
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val tempDir = Files.createTempDir()
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val tempDir = Utils.createTempDir()
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val outputDir = new File(tempDir, "points")
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val path = outputDir.toURI.toString
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points.saveAsTextFile(path)
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@ -23,8 +23,6 @@ import java.net.{URL, URLClassLoader}
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import org.scalatest.BeforeAndAfterAll
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import org.scalatest.FunSuite
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import com.google.common.io.Files
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import org.apache.spark.{SparkConf, TestUtils}
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import org.apache.spark.util.Utils
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@ -39,10 +37,8 @@ class ExecutorClassLoaderSuite extends FunSuite with BeforeAndAfterAll {
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override def beforeAll() {
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super.beforeAll()
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tempDir1 = Files.createTempDir()
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tempDir1.deleteOnExit()
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tempDir2 = Files.createTempDir()
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tempDir2.deleteOnExit()
|
||||
tempDir1 = Utils.createTempDir()
|
||||
tempDir2 = Utils.createTempDir()
|
||||
url1 = "file://" + tempDir1
|
||||
urls2 = List(tempDir2.toURI.toURL).toArray
|
||||
childClassNames.foreach(TestUtils.createCompiledClass(_, tempDir1, "1"))
|
||||
|
|
|
@ -22,7 +22,6 @@ import java.net.URLClassLoader
|
|||
|
||||
import scala.collection.mutable.ArrayBuffer
|
||||
|
||||
import com.google.common.io.Files
|
||||
import org.scalatest.FunSuite
|
||||
import org.apache.spark.SparkContext
|
||||
import org.apache.commons.lang3.StringEscapeUtils
|
||||
|
@ -190,8 +189,7 @@ class ReplSuite extends FunSuite {
|
|||
}
|
||||
|
||||
test("interacting with files") {
|
||||
val tempDir = Files.createTempDir()
|
||||
tempDir.deleteOnExit()
|
||||
val tempDir = Utils.createTempDir()
|
||||
val out = new FileWriter(tempDir + "/input")
|
||||
out.write("Hello world!\n")
|
||||
out.write("What's up?\n")
|
||||
|
|
|
@ -231,8 +231,7 @@ class CheckpointSuite extends TestSuiteBase {
|
|||
// failure, are re-processed or not.
|
||||
test("recovery with file input stream") {
|
||||
// Set up the streaming context and input streams
|
||||
val testDir = Files.createTempDir()
|
||||
testDir.deleteOnExit()
|
||||
val testDir = Utils.createTempDir()
|
||||
var ssc = new StreamingContext(master, framework, Seconds(1))
|
||||
ssc.checkpoint(checkpointDir)
|
||||
val fileStream = ssc.textFileStream(testDir.toString)
|
||||
|
|
|
@ -98,8 +98,7 @@ class InputStreamsSuite extends TestSuiteBase with BeforeAndAfter {
|
|||
conf.set("spark.streaming.clock", "org.apache.spark.streaming.util.SystemClock")
|
||||
|
||||
// Set up the streaming context and input streams
|
||||
val testDir = Files.createTempDir()
|
||||
testDir.deleteOnExit()
|
||||
val testDir = Utils.createTempDir()
|
||||
val ssc = new StreamingContext(conf, batchDuration)
|
||||
val fileStream = ssc.textFileStream(testDir.toString)
|
||||
val outputBuffer = new ArrayBuffer[Seq[String]] with SynchronizedBuffer[Seq[String]]
|
||||
|
|
|
@ -352,8 +352,7 @@ class FileGeneratingThread(input: Seq[String], testDir: Path, interval: Long)
|
|||
extends Thread with Logging {
|
||||
|
||||
override def run() {
|
||||
val localTestDir = Files.createTempDir()
|
||||
localTestDir.deleteOnExit()
|
||||
val localTestDir = Utils.createTempDir()
|
||||
var fs = testDir.getFileSystem(new Configuration())
|
||||
val maxTries = 3
|
||||
try {
|
||||
|
|
|
@ -24,12 +24,12 @@ import scala.collection.mutable.SynchronizedBuffer
|
|||
import scala.reflect.ClassTag
|
||||
|
||||
import org.scalatest.{BeforeAndAfter, FunSuite}
|
||||
import com.google.common.io.Files
|
||||
|
||||
import org.apache.spark.streaming.dstream.{DStream, InputDStream, ForEachDStream}
|
||||
import org.apache.spark.streaming.util.ManualClock
|
||||
import org.apache.spark.{SparkConf, Logging}
|
||||
import org.apache.spark.rdd.RDD
|
||||
import org.apache.spark.util.Utils
|
||||
|
||||
/**
|
||||
* This is a input stream just for the testsuites. This is equivalent to a checkpointable,
|
||||
|
@ -120,9 +120,8 @@ trait TestSuiteBase extends FunSuite with BeforeAndAfter with Logging {
|
|||
|
||||
// Directory where the checkpoint data will be saved
|
||||
lazy val checkpointDir = {
|
||||
val dir = Files.createTempDir()
|
||||
val dir = Utils.createTempDir()
|
||||
logDebug(s"checkpointDir: $dir")
|
||||
dir.deleteOnExit()
|
||||
dir.toString
|
||||
}
|
||||
|
||||
|
|
|
@ -20,13 +20,10 @@ package org.apache.spark.deploy.yarn
|
|||
import java.io.File
|
||||
import java.net.URI
|
||||
|
||||
import com.google.common.io.Files
|
||||
import org.apache.hadoop.conf.Configuration
|
||||
import org.apache.hadoop.fs.Path
|
||||
import org.apache.hadoop.mapreduce.MRJobConfig
|
||||
import org.apache.hadoop.yarn.conf.YarnConfiguration
|
||||
import org.apache.hadoop.yarn.api.ApplicationConstants.Environment
|
||||
import org.apache.hadoop.yarn.api.protocolrecords.GetNewApplicationResponse
|
||||
import org.apache.hadoop.yarn.api.records._
|
||||
import org.apache.hadoop.yarn.conf.YarnConfiguration
|
||||
import org.mockito.Matchers._
|
||||
|
@ -117,7 +114,7 @@ class ClientBaseSuite extends FunSuite with Matchers {
|
|||
doReturn(new Path("/")).when(client).copyFileToRemote(any(classOf[Path]),
|
||||
any(classOf[Path]), anyShort(), anyBoolean())
|
||||
|
||||
val tempDir = Files.createTempDir()
|
||||
val tempDir = Utils.createTempDir()
|
||||
try {
|
||||
client.prepareLocalResources(tempDir.getAbsolutePath())
|
||||
sparkConf.getOption(ClientBase.CONF_SPARK_USER_JAR) should be (Some(USER))
|
||||
|
|
Loading…
Reference in a new issue