diff --git a/core/src/main/scala/org/apache/spark/rdd/PairRDDFunctions.scala b/core/src/main/scala/org/apache/spark/rdd/PairRDDFunctions.scala
index e231336823..1e39e10856 100644
--- a/core/src/main/scala/org/apache/spark/rdd/PairRDDFunctions.scala
+++ b/core/src/main/scala/org/apache/spark/rdd/PairRDDFunctions.scala
@@ -261,7 +261,7 @@ class PairRDDFunctions[K, V](self: RDD[(K, V)])
     } else {
       StratifiedSamplingUtils.getBernoulliSamplingFunction(self, fractions, false, seed)
     }
-    self.mapPartitionsWithIndex(samplingFunc, preservesPartitioning = true)
+    self.mapPartitionsWithIndex(samplingFunc, preservesPartitioning = true, isOrderSensitive = true)
   }
 
   /**
@@ -291,7 +291,7 @@ class PairRDDFunctions[K, V](self: RDD[(K, V)])
     } else {
       StratifiedSamplingUtils.getBernoulliSamplingFunction(self, fractions, true, seed)
     }
-    self.mapPartitionsWithIndex(samplingFunc, preservesPartitioning = true)
+    self.mapPartitionsWithIndex(samplingFunc, preservesPartitioning = true, isOrderSensitive = true)
   }
 
   /**
diff --git a/core/src/main/scala/org/apache/spark/rdd/PartitionwiseSampledRDD.scala b/core/src/main/scala/org/apache/spark/rdd/PartitionwiseSampledRDD.scala
index 15691a8fc8..c8cdaa60e4 100644
--- a/core/src/main/scala/org/apache/spark/rdd/PartitionwiseSampledRDD.scala
+++ b/core/src/main/scala/org/apache/spark/rdd/PartitionwiseSampledRDD.scala
@@ -67,4 +67,12 @@ private[spark] class PartitionwiseSampledRDD[T: ClassTag, U: ClassTag](
     thisSampler.setSeed(split.seed)
     thisSampler.sample(firstParent[T].iterator(split.prev, context))
   }
+
+  override protected def getOutputDeterministicLevel = {
+    if (prev.outputDeterministicLevel == DeterministicLevel.UNORDERED) {
+      DeterministicLevel.INDETERMINATE
+    } else {
+      super.getOutputDeterministicLevel
+    }
+  }
 }
diff --git a/core/src/main/scala/org/apache/spark/rdd/RDD.scala b/core/src/main/scala/org/apache/spark/rdd/RDD.scala
index 53268b169d..08fc309d52 100644
--- a/core/src/main/scala/org/apache/spark/rdd/RDD.scala
+++ b/core/src/main/scala/org/apache/spark/rdd/RDD.scala
@@ -555,7 +555,7 @@ abstract class RDD[T: ClassTag](
       val sampler = new BernoulliCellSampler[T](lb, ub)
       sampler.setSeed(seed + index)
       sampler.sample(partition)
-    }, preservesPartitioning = true)
+    }, isOrderSensitive = true, preservesPartitioning = true)
   }
 
   /**
@@ -868,6 +868,29 @@ abstract class RDD[T: ClassTag](
       preservesPartitioning)
   }
 
+  /**
+   * Return a new RDD by applying a function to each partition of this RDD, while tracking the index
+   * of the original partition.
+   *
+   * `preservesPartitioning` indicates whether the input function preserves the partitioner, which
+   * should be `false` unless this is a pair RDD and the input function doesn't modify the keys.
+   *
+   * `isOrderSensitive` indicates whether the function is order-sensitive. If it is order
+   * sensitive, it may return totally different result when the input order
+   * is changed. Mostly stateful functions are order-sensitive.
+   */
+  private[spark] def mapPartitionsWithIndex[U: ClassTag](
+      f: (Int, Iterator[T]) => Iterator[U],
+      preservesPartitioning: Boolean,
+      isOrderSensitive: Boolean): RDD[U] = withScope {
+    val cleanedF = sc.clean(f)
+    new MapPartitionsRDD(
+      this,
+      (_: TaskContext, index: Int, iter: Iterator[T]) => cleanedF(index, iter),
+      preservesPartitioning,
+      isOrderSensitive = isOrderSensitive)
+  }
+
   /**
    * Zips this RDD with another one, returning key-value pairs with the first element in each RDD,
    * second element in each RDD, etc. Assumes that the two RDDs have the *same number of
diff --git a/core/src/test/scala/org/apache/spark/scheduler/DAGSchedulerSuite.scala b/core/src/test/scala/org/apache/spark/scheduler/DAGSchedulerSuite.scala
index d6cd57fa6e..7cb7eceec6 100644
--- a/core/src/test/scala/org/apache/spark/scheduler/DAGSchedulerSuite.scala
+++ b/core/src/test/scala/org/apache/spark/scheduler/DAGSchedulerSuite.scala
@@ -2783,6 +2783,18 @@ class DAGSchedulerSuite extends SparkFunSuite with LocalSparkContext with TimeLi
       .contains("Spark cannot rollback the ShuffleMapStage 1"))
   }
 
+  test("SPARK-29042: Sampled RDD with unordered input should be indeterminate") {
+    val shuffleMapRdd1 = new MyRDD(sc, 2, Nil, indeterminate = false)
+
+    val shuffleDep1 = new ShuffleDependency(shuffleMapRdd1, new HashPartitioner(2))
+    val shuffleMapRdd2 = new MyRDD(sc, 2, List(shuffleDep1), tracker = mapOutputTracker)
+
+    assert(shuffleMapRdd2.outputDeterministicLevel == DeterministicLevel.UNORDERED)
+
+    val sampledRdd = shuffleMapRdd2.sample(true, 0.3, 1000L)
+    assert(sampledRdd.outputDeterministicLevel == DeterministicLevel.INDETERMINATE)
+  }
+
   private def assertResultStageFailToRollback(mapRdd: MyRDD): Unit = {
     val shuffleDep = new ShuffleDependency(mapRdd, new HashPartitioner(2))
     val shuffleId = shuffleDep.shuffleId
diff --git a/graphx/src/main/scala/org/apache/spark/graphx/impl/GraphImpl.scala b/graphx/src/main/scala/org/apache/spark/graphx/impl/GraphImpl.scala
index 0a97ab4926..8564597f4f 100644
--- a/graphx/src/main/scala/org/apache/spark/graphx/impl/GraphImpl.scala
+++ b/graphx/src/main/scala/org/apache/spark/graphx/impl/GraphImpl.scala
@@ -103,15 +103,16 @@ class GraphImpl[VD: ClassTag, ED: ClassTag] protected (
       (part, (e.srcId, e.dstId, e.attr))
     }
       .partitionBy(new HashPartitioner(numPartitions))
-      .mapPartitionsWithIndex( { (pid, iter) =>
-        val builder = new EdgePartitionBuilder[ED, VD]()(edTag, vdTag)
-        iter.foreach { message =>
-          val data = message._2
-          builder.add(data._1, data._2, data._3)
-        }
-        val edgePartition = builder.toEdgePartition
-        Iterator((pid, edgePartition))
-      }, preservesPartitioning = true)).cache()
+      .mapPartitionsWithIndex(
+        { (pid: Int, iter: Iterator[(PartitionID, (VertexId, VertexId, ED))]) =>
+          val builder = new EdgePartitionBuilder[ED, VD]()(edTag, vdTag)
+          iter.foreach { message =>
+            val data = message._2
+            builder.add(data._1, data._2, data._3)
+          }
+          val edgePartition = builder.toEdgePartition
+          Iterator((pid, edgePartition))
+        }, preservesPartitioning = true)).cache()
     GraphImpl.fromExistingRDDs(vertices.withEdges(newEdges), newEdges)
   }