[SPARK-36345][SPARK-36367][INFRA][PYTHON] Disable tests failed by the incompatible behavior of pandas 1.3
Disable tests failed by the incompatible behavior of pandas 1.3.
Pandas 1.3 has been released.
There are some behavior changes and we should follow it, but it's not ready yet.
No.
Disabled some tests related to the behavior change.
Closes #33598 from ueshin/issues/SPARK-36367/disable_tests.
Authored-by: Takuya UESHIN <ueshin@databricks.com>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
(cherry picked from commit 8cb9cf39b6
)
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
This commit is contained in:
parent
c25f1e4347
commit
cb075b5301
4
.github/workflows/build_and_test.yml
vendored
4
.github/workflows/build_and_test.yml
vendored
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@ -149,7 +149,7 @@ jobs:
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name: "Build modules: ${{ matrix.modules }}"
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runs-on: ubuntu-20.04
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container:
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image: dongjoon/apache-spark-github-action-image:20210602
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image: dongjoon/apache-spark-github-action-image:20210730
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strategy:
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fail-fast: false
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matrix:
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@ -227,8 +227,6 @@ jobs:
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# Run the tests.
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- name: Run tests
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run: |
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# TODO(SPARK-36345): Install mlflow>=1.0 and sklearn in Python 3.9 of the base image
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python3.9 -m pip install 'mlflow>=1.0' sklearn
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export PATH=$PATH:$HOME/miniconda/bin
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./dev/run-tests --parallelism 1 --modules "$MODULES_TO_TEST"
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- name: Upload test results to report
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@ -20,6 +20,7 @@ A wrapper for GroupedData to behave similar to pandas GroupBy.
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"""
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from abc import ABCMeta, abstractmethod
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import builtins
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import sys
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import inspect
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from collections import OrderedDict, namedtuple
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@ -43,6 +44,7 @@ from typing import (
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TYPE_CHECKING,
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)
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import numpy as np
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import pandas as pd
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from pandas.api.types import is_hashable, is_list_like
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@ -102,6 +104,12 @@ if TYPE_CHECKING:
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# to keep it the same as pandas
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NamedAgg = namedtuple("NamedAgg", ["column", "aggfunc"])
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_builtin_table = {
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builtins.sum: np.sum,
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builtins.max: np.max,
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builtins.min: np.min,
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} # type: Dict[Callable, Callable]
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class GroupBy(Generic[FrameLike], metaclass=ABCMeta):
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"""
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@ -190,8 +190,12 @@ class CategoricalOpsTest(PandasOnSparkTestCase, TestCasesUtils):
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self.assert_eq(pser.astype(str), psser.astype(str))
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self.assert_eq(pser.astype(bool), psser.astype(bool))
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self.assert_eq(pser.astype("category"), psser.astype("category"))
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cat_type = CategoricalDtype(categories=[3, 1, 2])
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if LooseVersion(pd.__version__) >= LooseVersion("1.2"):
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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elif LooseVersion(pd.__version__) >= LooseVersion("1.2"):
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self.assert_eq(pser.astype(cat_type), psser.astype(cat_type))
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else:
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self.assert_eq(pd.Series(data).astype(cat_type), psser.astype(cat_type))
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@ -1478,20 +1478,25 @@ class IndexesTest(PandasOnSparkTestCase, TestUtils):
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psidx2 = ps.from_pandas(pidx2)
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self.assert_eq(psidx1.union(psidx2), pidx1.union(pidx2))
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self.assert_eq(psidx2.union(psidx1), pidx2.union(pidx1))
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self.assert_eq(
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psidx1.union([3, 4, 3, 3, 5, 6]), pidx1.union([3, 4, 3, 4, 5, 6]), almost=True
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)
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self.assert_eq(
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psidx2.union([1, 2, 3, 4, 3, 4, 3, 4]),
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pidx2.union([1, 2, 3, 4, 3, 4, 3, 4]),
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almost=True,
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)
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self.assert_eq(
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psidx1.union(ps.Series([3, 4, 3, 3, 5, 6])),
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pidx1.union(pd.Series([3, 4, 3, 4, 5, 6])),
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almost=True,
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)
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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else:
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self.assert_eq(psidx2.union(psidx1), pidx2.union(pidx1))
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self.assert_eq(
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psidx2.union([1, 2, 3, 4, 3, 4, 3, 4]),
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pidx2.union([1, 2, 3, 4, 3, 4, 3, 4]),
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almost=True,
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)
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self.assert_eq(
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psidx2.union(ps.Series([1, 2, 3, 4, 3, 4, 3, 4])),
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pidx2.union(pd.Series([1, 2, 3, 4, 3, 4, 3, 4])),
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@ -1508,6 +1513,10 @@ class IndexesTest(PandasOnSparkTestCase, TestUtils):
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psmidx3 = ps.from_pandas(pmidx3)
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psmidx4 = ps.from_pandas(pmidx4)
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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else:
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self.assert_eq(psmidx1.union(psmidx2), pmidx1.union(pmidx2))
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self.assert_eq(psmidx2.union(psmidx1), pmidx2.union(pmidx1))
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self.assert_eq(psmidx3.union(psmidx4), pmidx3.union(pmidx4))
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@ -1529,9 +1538,12 @@ class IndexesTest(PandasOnSparkTestCase, TestUtils):
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pmidx4.union([(1, 1), (1, 2), (1, 3), (1, 4), (1, 3), (1, 4)]),
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)
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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# Testing if the result is correct after sort=False.
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# The `sort` argument is added in pandas 0.24.
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if LooseVersion(pd.__version__) >= LooseVersion("0.24"):
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elif LooseVersion(pd.__version__) >= LooseVersion("0.24"):
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self.assert_eq(
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psmidx1.union(psmidx2, sort=False).sort_values(),
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pmidx1.union(pmidx2, sort=False).sort_values(),
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@ -176,7 +176,10 @@ class CategoricalIndexTest(PandasOnSparkTestCase, TestUtils):
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self.assert_eq(kcidx.astype("category"), pcidx.astype("category"))
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if LooseVersion(pd.__version__) >= LooseVersion("1.2"):
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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elif LooseVersion(pd.__version__) >= LooseVersion("1.2"):
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self.assert_eq(
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kcidx.astype(CategoricalDtype(["b", "c", "a"])),
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pcidx.astype(CategoricalDtype(["b", "c", "a"])),
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@ -73,6 +73,10 @@ class CategoricalTest(PandasOnSparkTestCase, TestUtils):
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pser.cat.categories = ["z", "y", "x"]
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psser.cat.categories = ["z", "y", "x"]
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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else:
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self.assert_eq(pser, psser)
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self.assert_eq(pdf, psdf)
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@ -91,6 +95,10 @@ class CategoricalTest(PandasOnSparkTestCase, TestUtils):
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pser.cat.add_categories(4, inplace=True)
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psser.cat.add_categories(4, inplace=True)
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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else:
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self.assert_eq(pser, psser)
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self.assert_eq(pdf, psdf)
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@ -115,6 +123,10 @@ class CategoricalTest(PandasOnSparkTestCase, TestUtils):
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pser.cat.remove_categories(2, inplace=True)
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psser.cat.remove_categories(2, inplace=True)
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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else:
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self.assert_eq(pser, psser)
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self.assert_eq(pdf, psdf)
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@ -138,6 +150,10 @@ class CategoricalTest(PandasOnSparkTestCase, TestUtils):
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pser.cat.remove_unused_categories(inplace=True)
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psser.cat.remove_unused_categories(inplace=True)
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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else:
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self.assert_eq(pser, psser)
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self.assert_eq(pdf, psdf)
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@ -164,11 +180,19 @@ class CategoricalTest(PandasOnSparkTestCase, TestUtils):
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pser.cat.reorder_categories([1, 2, 3], inplace=True)
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psser.cat.reorder_categories([1, 2, 3], inplace=True)
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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else:
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self.assert_eq(pser, psser)
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self.assert_eq(pdf, psdf)
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pser.cat.reorder_categories([3, 2, 1], ordered=True, inplace=True)
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psser.cat.reorder_categories([3, 2, 1], ordered=True, inplace=True)
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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else:
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self.assert_eq(pser, psser)
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self.assert_eq(pdf, psdf)
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@ -189,6 +213,10 @@ class CategoricalTest(PandasOnSparkTestCase, TestUtils):
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pser.cat.as_ordered(inplace=True)
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psser.cat.as_ordered(inplace=True)
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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else:
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self.assert_eq(pser, psser)
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self.assert_eq(pdf, psdf)
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@ -215,7 +243,10 @@ class CategoricalTest(PandasOnSparkTestCase, TestUtils):
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self.assert_eq(kcser.astype("category"), pcser.astype("category"))
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if LooseVersion(pd.__version__) >= LooseVersion("1.2"):
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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elif LooseVersion(pd.__version__) >= LooseVersion("1.2"):
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self.assert_eq(
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kcser.astype(CategoricalDtype(["b", "c", "a"])),
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pcser.astype(CategoricalDtype(["b", "c", "a"])),
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@ -419,7 +450,10 @@ class CategoricalTest(PandasOnSparkTestCase, TestUtils):
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def astype(x) -> ps.Series[dtype]:
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return x.astype(dtype)
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if LooseVersion(pd.__version__) >= LooseVersion("1.2"):
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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elif LooseVersion(pd.__version__) >= LooseVersion("1.2"):
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self.assert_eq(
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psdf.groupby("a").transform(astype).sort_values("b").reset_index(drop=True),
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pdf.groupby("a").transform(astype).sort_values("b").reset_index(drop=True),
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@ -637,16 +671,28 @@ class CategoricalTest(PandasOnSparkTestCase, TestUtils):
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pser.cat.rename_categories({"a": "A", "c": "C"}, inplace=True)
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psser.cat.rename_categories({"a": "A", "c": "C"}, inplace=True)
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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else:
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self.assert_eq(pser, psser)
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self.assert_eq(pdf, psdf)
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pser.cat.rename_categories(lambda x: x.upper(), inplace=True)
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psser.cat.rename_categories(lambda x: x.upper(), inplace=True)
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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else:
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self.assert_eq(pser, psser)
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self.assert_eq(pdf, psdf)
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pser.cat.rename_categories([0, 1, 3, 2], inplace=True)
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psser.cat.rename_categories([0, 1, 3, 2], inplace=True)
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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else:
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self.assert_eq(pser, psser)
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self.assert_eq(pdf, psdf)
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@ -717,11 +763,19 @@ class CategoricalTest(PandasOnSparkTestCase, TestUtils):
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pser.cat.set_categories(["a", "c", "b", "o"], inplace=True, rename=True),
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psser.cat.set_categories(["a", "c", "b", "o"], inplace=True, rename=True),
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)
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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else:
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self.assert_eq(pser, psser)
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self.assert_eq(pdf, psdf)
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pser.cat.set_categories([2, 3, 1, 0], inplace=True, rename=False),
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psser.cat.set_categories([2, 3, 1, 0], inplace=True, rename=False),
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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else:
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self.assert_eq(pser, psser)
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self.assert_eq(pdf, psdf)
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@ -145,6 +145,11 @@ class ExpandingTest(PandasOnSparkTestCase, TestUtils):
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pdf = pd.DataFrame({"a": [1.0, 2.0, 3.0, 2.0], "b": [4.0, 2.0, 3.0, 1.0]})
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psdf = ps.from_pandas(pdf)
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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else:
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self.assert_eq(
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getattr(psdf.groupby(psdf.a).expanding(2), f)().sort_index(),
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getattr(pdf.groupby(pdf.a).expanding(2), f)().sort_index(),
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@ -157,6 +162,7 @@ class ExpandingTest(PandasOnSparkTestCase, TestUtils):
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getattr(psdf.groupby(psdf.a + 1).expanding(2), f)().sort_index(),
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getattr(pdf.groupby(pdf.a + 1).expanding(2), f)().sort_index(),
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)
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self.assert_eq(
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getattr(psdf.b.groupby(psdf.a).expanding(2), f)().sort_index(),
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getattr(pdf.b.groupby(pdf.a).expanding(2), f)().sort_index(),
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@ -174,6 +180,11 @@ class ExpandingTest(PandasOnSparkTestCase, TestUtils):
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columns = pd.MultiIndex.from_tuples([("a", "x"), ("a", "y")])
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pdf.columns = columns
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psdf.columns = columns
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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else:
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self.assert_eq(
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getattr(psdf.groupby(("a", "x")).expanding(2), f)().sort_index(),
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getattr(pdf.groupby(("a", "x")).expanding(2), f)().sort_index(),
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|
|
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@ -52,10 +52,15 @@ class OpsOnDiffFramesGroupByExpandingTest(PandasOnSparkTestCase, TestUtils):
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psdf = ps.from_pandas(pdf)
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kkey = ps.from_pandas(pkey)
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
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pass
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else:
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self.assert_eq(
|
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getattr(psdf.groupby(kkey).expanding(2), f)().sort_index(),
|
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getattr(pdf.groupby(pkey).expanding(2), f)().sort_index(),
|
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)
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|
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self.assert_eq(
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getattr(psdf.groupby(kkey)["b"].expanding(2), f)().sort_index(),
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getattr(pdf.groupby(pkey)["b"].expanding(2), f)().sort_index(),
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|
|
|
@ -14,6 +14,7 @@
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# See the License for the specific language governing permissions and
|
||||
# limitations under the License.
|
||||
#
|
||||
from distutils.version import LooseVersion
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import pandas as pd
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|
@ -49,10 +50,15 @@ class OpsOnDiffFramesGroupByRollingTest(PandasOnSparkTestCase, TestUtils):
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psdf = ps.from_pandas(pdf)
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kkey = ps.from_pandas(pkey)
|
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|
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if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
|
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# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
|
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pass
|
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else:
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self.assert_eq(
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getattr(psdf.groupby(kkey).rolling(2), f)().sort_index(),
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getattr(pdf.groupby(pkey).rolling(2), f)().sort_index(),
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)
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|
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self.assert_eq(
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getattr(psdf.groupby(kkey)["b"].rolling(2), f)().sort_index(),
|
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getattr(pdf.groupby(pkey)["b"].rolling(2), f)().sort_index(),
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|
|
|
@ -14,6 +14,7 @@
|
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# See the License for the specific language governing permissions and
|
||||
# limitations under the License.
|
||||
#
|
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from distutils.version import LooseVersion
|
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|
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import numpy as np
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import pandas as pd
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@ -110,6 +111,11 @@ class RollingTest(PandasOnSparkTestCase, TestUtils):
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pdf = pd.DataFrame({"a": [1.0, 2.0, 3.0, 2.0], "b": [4.0, 2.0, 3.0, 1.0]})
|
||||
psdf = ps.from_pandas(pdf)
|
||||
|
||||
if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
|
||||
# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
|
||||
pass
|
||||
else:
|
||||
self.assert_eq(
|
||||
getattr(psdf.groupby(psdf.a).rolling(2), f)().sort_index(),
|
||||
getattr(pdf.groupby(pdf.a).rolling(2), f)().sort_index(),
|
||||
|
@ -122,6 +128,7 @@ class RollingTest(PandasOnSparkTestCase, TestUtils):
|
|||
getattr(psdf.groupby(psdf.a + 1).rolling(2), f)().sort_index(),
|
||||
getattr(pdf.groupby(pdf.a + 1).rolling(2), f)().sort_index(),
|
||||
)
|
||||
|
||||
self.assert_eq(
|
||||
getattr(psdf.b.groupby(psdf.a).rolling(2), f)().sort_index(),
|
||||
getattr(pdf.b.groupby(pdf.a).rolling(2), f)().sort_index(),
|
||||
|
@ -139,6 +146,11 @@ class RollingTest(PandasOnSparkTestCase, TestUtils):
|
|||
columns = pd.MultiIndex.from_tuples([("a", "x"), ("a", "y")])
|
||||
pdf.columns = columns
|
||||
psdf.columns = columns
|
||||
|
||||
if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
|
||||
# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
|
||||
pass
|
||||
else:
|
||||
self.assert_eq(
|
||||
getattr(psdf.groupby(("a", "x")).rolling(2), f)().sort_index(),
|
||||
getattr(pdf.groupby(("a", "x")).rolling(2), f)().sort_index(),
|
||||
|
|
|
@ -1556,6 +1556,10 @@ class SeriesTest(PandasOnSparkTestCase, SQLTestUtils):
|
|||
if extension_object_dtypes_available:
|
||||
from pandas import StringDtype
|
||||
|
||||
if LooseVersion(pd.__version__) >= LooseVersion("1.3"):
|
||||
# TODO(SPARK-36367): Fix the behavior to follow pandas >= 1.3
|
||||
pass
|
||||
else:
|
||||
self._check_extension(
|
||||
psser.astype("M").astype("string"), pser.astype("M").astype("string")
|
||||
)
|
||||
|
|
Loading…
Reference in a new issue