Commit graph

23102 commits

Author SHA1 Message Date
Yuming Wang 62551cceeb
[SPARK-25492][TEST] Refactor WideSchemaBenchmark to use main method
## What changes were proposed in this pull request?

Refactor `WideSchemaBenchmark` to use main method.
1. use `spark-submit`:
```console
bin/spark-submit --class  org.apache.spark.sql.execution.benchmark.WideSchemaBenchmark --jars ./core/target/spark-core_2.11-3.0.0-SNAPSHOT-tests.jar ./sql/core/target/spark-sql_2.11-3.0.0-SNAPSHOT-tests.jar
```

2. Generate benchmark result:
```console
SPARK_GENERATE_BENCHMARK_FILES=1 build/sbt "sql/test:runMain org.apache.spark.sql.execution.benchmark.WideSchemaBenchmark"
```

## How was this patch tested?

manual tests

Closes #22501 from wangyum/SPARK-25492.

Lead-authored-by: Yuming Wang <yumwang@ebay.com>
Co-authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-10-20 17:31:13 -07:00
hyukjinkwon 5330c192bd [HOTFIX] Fix PySpark pip packaging tests by non-ascii compatible character
## What changes were proposed in this pull request?

PIP installation requires to package bin scripts together.

https://github.com/apache/spark/blob/master/python/setup.py#L71

The recent fix introduced non-ascii compatible (non-breackable space I guess) at ec96d34e74 fix.

This is usually not the problem but looks Jenkins's default encoding is `ascii` and during copying the script, there looks implicit conversion between bytes and strings - where the default encoding is used

https://github.com/pypa/setuptools/blob/v40.4.3/setuptools/command/develop.py#L185-L189

## How was this patch tested?

Jenkins

Closes #22782 from HyukjinKwon/pip-failure-fix.

Authored-by: hyukjinkwon <gurwls223@apache.org>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-10-21 02:04:45 +08:00
WeichenXu 3b4f35f568
[DOC][MINOR] Fix minor error in the code of graphx guide
## What changes were proposed in this pull request?

Fix minor error in the code "sketch of pregel implementation" of GraphX guide.
This fixed error relates to `[SPARK-12995][GraphX] Remove deprecate APIs from Pregel`

## How was this patch tested?

N/A

Closes #22780 from WeichenXu123/minor_doc_update1.

Authored-by: WeichenXu <weichen.xu@databricks.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-10-20 10:32:09 -07:00
Dongjoon Hyun fc9ba9dcc6
[MINOR][DOC] Update the building doc to use Maven 3.5.4 and Java 8 only
## What changes were proposed in this pull request?

Since we didn't test Java 9 ~ 11 up to now in the community, fix the document to describe Java 8 only.

## How was this patch tested?
N/A (This is a document only change.)

Closes #22781 from dongjoon-hyun/SPARK-JDK-DOC.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-10-19 23:56:40 -07:00
Dilip Biswal ed9d0aac90 [SPARK-24499][SQL][DOC][FOLLOWUP] Fix some broken links
## What changes were proposed in this pull request?
Fix some broken links in the new document. I have clicked through all the links. Hopefully i haven't missed any :-)

## How was this patch tested?
Built using jekyll and verified the links.

Closes #22772 from dilipbiswal/doc_check.

Authored-by: Dilip Biswal <dbiswal@us.ibm.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2018-10-19 23:55:19 -07:00
hyukjinkwon 3370865b0e [SPARK-25785][SQL] Add prettyNames for from_json, to_json, from_csv, and schema_of_json
## What changes were proposed in this pull request?

This PR adds `prettyNames` for `from_json`, `to_json`, `from_csv`, and `schema_of_json` so that appropriate names are used.

## How was this patch tested?

Unit tests

Closes #22773 from HyukjinKwon/minor-prettyNames.

Authored-by: hyukjinkwon <gurwls223@apache.org>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-10-20 10:15:53 +08:00
Wenchen Fan 4acbda4a96 Revert "[SPARK-25764][ML][EXAMPLES] Update BisectingKMeans example to use ClusteringEvaluator"
This reverts commit d0ecff2854.
2018-10-20 09:28:53 +08:00
Rob Vesse ec96d34e74 [SPARK-25745][K8S] Improve docker-image-tool.sh script
## What changes were proposed in this pull request?

Adds error checking and handling to `docker` invocations ensuring the script terminates early in the event of any errors.  This avoids subtle errors that can occur e.g. if the base image fails to build the Python/R images can end up being built from outdated base images and makes it more explicit to the user that something went wrong.

Additionally the provided `Dockerfiles` assume that Spark was first built locally or is a runnable distribution however it didn't previously enforce this.  The script will now check the JARs folder to ensure that Spark JARs actually exist and if not aborts early reminding the user they need to build locally first.

## How was this patch tested?

- Tested with a `mvn clean` working copy and verified that the script now terminates early
- Tested with bad `Dockerfiles` that fail to build to see that early termination occurred

Closes #22748 from rvesse/SPARK-25745.

Authored-by: Rob Vesse <rvesse@dotnetrdf.org>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2018-10-19 15:03:53 -07:00
Imran Rashid 43717dee57 [SPARK-25704][CORE] Allocate a bit less than Int.MaxValue
JVMs don't you allocate arrays of length exactly Int.MaxValue, so leave
a little extra room.  This is necessary when reading blocks >2GB off
the network (for remote reads or for cache replication).

Unit tests via jenkins, ran a test with blocks over 2gb on a cluster

Closes #22705 from squito/SPARK-25704.

Authored-by: Imran Rashid <irashid@cloudera.com>
Signed-off-by: Imran Rashid <irashid@cloudera.com>
2018-10-19 12:52:41 -05:00
Wenchen Fan 130121711c fix security issue of zinc(update run-tests.py) 2018-10-20 00:23:16 +08:00
Yuming Wang 9ad0f6ea89
[SPARK-25269][SQL] SQL interface support specify StorageLevel when cache table
## What changes were proposed in this pull request?

SQL interface support specify `StorageLevel` when cache table. The semantic is:
```sql
CACHE TABLE tableName OPTIONS('storageLevel' 'DISK_ONLY');
```
All supported `StorageLevel` are:
eefdf9f9dd/core/src/main/scala/org/apache/spark/storage/StorageLevel.scala (L172-L183)

## How was this patch tested?

unit tests and manual tests.

manual tests configuration:
```
--executor-memory 15G --executor-cores 5 --num-executors 50
```
Data:
Input Size / Records: 1037.7 GB / 11732805788

Result:
![image](https://user-images.githubusercontent.com/5399861/47213362-56a1c980-d3cd-11e8-82e7-28d7abc5923e.png)

Closes #22263 from wangyum/SPARK-25269.

Authored-by: Yuming Wang <yumwang@ebay.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-10-19 09:15:55 -07:00
Wenchen Fan ac586bbb01 fix security issue of zinc(simplier version) 2018-10-19 23:54:15 +08:00
Wenchen Fan ec1fafe3e7 fix security issue of zinc 2018-10-19 21:33:11 +08:00
Peter Toth f38594fc56 [SPARK-25768][SQL] fix constant argument expecting UDAFs
## What changes were proposed in this pull request?

Without this PR some UDAFs like `GenericUDAFPercentileApprox` can throw an exception because expecting a constant parameter (object inspector) as a particular argument.

The exception is thrown because `toPrettySQL` call in `ResolveAliases` analyzer rule transforms a `Literal` parameter to a `PrettyAttribute` which is then transformed to an `ObjectInspector` instead of a `ConstantObjectInspector`.
The exception comes from `getEvaluator` method of `GenericUDAFPercentileApprox` that actually shouldn't be called during `toPrettySQL` transformation. The reason why it is called are the non lazy fields in `HiveUDAFFunction`.

This PR makes all fields of `HiveUDAFFunction` lazy.

## How was this patch tested?

added new UT

Closes #22766 from peter-toth/SPARK-25768.

Authored-by: Peter Toth <peter.toth@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-10-19 21:17:14 +08:00
maryannxue e8167768cf [SPARK-25044][FOLLOW-UP] Change ScalaUDF constructor signature
## What changes were proposed in this pull request?

This is a follow-up PR for #22259. The extra field added in `ScalaUDF` with the original PR was declared optional, but should be indeed required, otherwise callers of `ScalaUDF`'s constructor could ignore this new field and cause the result to be incorrect. This PR makes the new field required and changes its name to `handleNullForInputs`.

#22259 breaks the previous behavior for null-handling of primitive-type input parameters. For example, for `val f = udf({(x: Int, y: Any) => x})`, `f(null, "str")` should return `null` but would return `0` after #22259. In this PR, all UDF methods except `def udf(f: AnyRef, dataType: DataType): UserDefinedFunction` have been restored with the original behavior. The only exception is documented in the Spark SQL migration guide.

In addition, now that we have this extra field indicating if a null-test should be applied on the corresponding input value, we can also make use of this flag to avoid the rule `HandleNullInputsForUDF` being applied infinitely.

## How was this patch tested?
Added UT in UDFSuite

Passed affected existing UTs:
AnalysisSuite
UDFSuite

Closes #22732 from maryannxue/spark-25044-followup.

Lead-authored-by: maryannxue <maryannxue@apache.org>
Co-authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-10-19 21:03:59 +08:00
Russell Spitzer 6e0fc8b0fc [SPARK-25560][SQL] Allow FunctionInjection in SparkExtensions
This allows an implementer of Spark Session Extensions to utilize a
method "injectFunction" which will add a new function to the default
Spark Session Catalogue.

## What changes were proposed in this pull request?

Adds a new function to SparkSessionExtensions

    def injectFunction(functionDescription: FunctionDescription)

Where function description is a new type

  type FunctionDescription = (FunctionIdentifier, FunctionBuilder)

The functions are loaded in BaseSessionBuilder when the function registry does not have a parent
function registry to get loaded from.

## How was this patch tested?

New unit tests are added for the extension in SparkSessionExtensionSuite

Closes #22576 from RussellSpitzer/SPARK-25560.

Authored-by: Russell Spitzer <Russell.Spitzer@gmail.com>
Signed-off-by: Herman van Hovell <hvanhovell@databricks.com>
2018-10-19 10:40:56 +02:00
hyukjinkwon c8f7691c64 [MINOR][DOC] Spacing items in migration guide for readability and consistency
## What changes were proposed in this pull request?

Currently, migration guide has no space between each item which looks too compact and hard to read. Some of items already had some spaces between them in the migration guide. This PR suggest to format them consistently for readability.

Before:

![screen shot 2018-10-18 at 10 00 04 am](https://user-images.githubusercontent.com/6477701/47126768-9e84fb80-d2bc-11e8-9211-84703486c553.png)

After:

![screen shot 2018-10-18 at 9 53 55 am](https://user-images.githubusercontent.com/6477701/47126708-4fd76180-d2bc-11e8-9aa5-546f0622ca20.png)

## How was this patch tested?

Manually tested:

Closes #22761 from HyukjinKwon/minor-migration-doc.

Authored-by: hyukjinkwon <gurwls223@apache.org>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-10-19 13:55:27 +08:00
Justin Uang 1e6c1d8bfb [SPARK-25493][SQL] Use auto-detection for CRLF in CSV datasource multiline mode
## What changes were proposed in this pull request?

CSVs with windows style crlf ('\r\n') don't work in multiline mode. They work fine in single line mode because the line separation is done by Hadoop, which can handle all the different types of line separators. This PR fixes it by enabling Univocity's line separator detection in multiline mode, which will detect '\r\n', '\r', or '\n' automatically as it is done by hadoop in single line mode.

## How was this patch tested?

Unit test with a file with crlf line endings.

Closes #22503 from justinuang/fix-clrf-multiline.

Authored-by: Justin Uang <juang@palantir.com>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-10-19 11:13:02 +08:00
Marco Gaido d0ecff2854 [SPARK-25764][ML][EXAMPLES] Update BisectingKMeans example to use ClusteringEvaluator
## What changes were proposed in this pull request?

The PR updates the examples for `BisectingKMeans` so that they don't use the deprecated method `computeCost` (see SPARK-25758).

## How was this patch tested?

running examples

Closes #22763 from mgaido91/SPARK-25764.

Authored-by: Marco Gaido <marcogaido91@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-10-19 09:33:46 +08:00
shivusondur f704ebe902 [SPARK-25683][CORE] Updated the log for the firstTime event Drop occurs
## What changes were proposed in this pull request?

When the first dropEvent occurs, LastReportTimestamp was printing in the log as
Wed Dec 31 16:00:00 PST 1969
(Dropped 1 events from eventLog since Wed Dec 31 16:00:00 PST 1969.)

The reason is that lastReportTimestamp initialized with 0.

Now log is updated to print "... since the application starts" if 'lastReportTimestamp' == 0.
this will happens first dropEvent occurs.

## How was this patch tested?
Manually verified.

Closes #22677 from shivusondur/AsyncEvent1.

Authored-by: shivusondur <shivusondur@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2018-10-18 15:05:56 -07:00
Yuanjian Li 987f386588 [SPARK-24499][SQL][DOC] Split the page of sql-programming-guide.html to multiple separate pages
## What changes were proposed in this pull request?

1. Split the main page of sql-programming-guide into 7 parts:

- Getting Started
- Data Sources
- Performance Turing
- Distributed SQL Engine
- PySpark Usage Guide for Pandas with Apache Arrow
- Migration Guide
- Reference

2. Add left menu for sql-programming-guide, keep first level index for each part in the menu.
![image](https://user-images.githubusercontent.com/4833765/47016859-6332e180-d183-11e8-92e8-ce62518a83c4.png)

## How was this patch tested?

Local test with jekyll build/serve.

Closes #22746 from xuanyuanking/SPARK-24499.

Authored-by: Yuanjian Li <xyliyuanjian@gmail.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2018-10-18 11:59:06 -07:00
Marco Gaido c2962546d9
[SPARK-25758][ML] Deprecate computeCost on BisectingKMeans
## What changes were proposed in this pull request?

The PR proposes to deprecate the `computeCost` method on `BisectingKMeans` in favor of the adoption of `ClusteringEvaluator` in order to evaluate the clustering.

## How was this patch tested?

NA

Closes #22756 from mgaido91/SPARK-25758.

Authored-by: Marco Gaido <marcogaido91@gmail.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-10-18 10:32:25 -07:00
Marcelo Vanzin 15524c41b2 [SPARK-25682][K8S] Package example jars in same target for dev and distro images.
This way the image generated from both environments has the same layout,
with just a difference in contents that should not affect functionality.

Also added some minor error checking to the image script.

Closes #22681 from vanzin/SPARK-25682.

Authored-by: Marcelo Vanzin <vanzin@cloudera.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2018-10-18 10:21:37 -07:00
Takuya UESHIN e80f18dbd8 [SPARK-25763][SQL][PYSPARK][TEST] Use more @contextmanager to ensure clean-up each test.
## What changes were proposed in this pull request?

Currently each test in `SQLTest` in PySpark is not cleaned properly.
We should introduce and use more `contextmanager` to be convenient to clean up the context properly.

## How was this patch tested?

Modified tests.

Closes #22762 from ueshin/issues/SPARK-25763/cleanup_sqltests.

Authored-by: Takuya UESHIN <ueshin@databricks.com>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-10-19 00:31:01 +08:00
Yuming Wang 1117fc35ff
[SPARK-25760][SQL] Set AddJarCommand return empty
## What changes were proposed in this pull request?

Only `AddJarCommand` return `0`, the user will be confused about what it means. This PR sets it to empty.

```sql
spark-sql> add jar /Users/yumwang/spark/sql/hive/src/test/resources/TestUDTF.jar;
ADD JAR /Users/yumwang/spark/sql/hive/src/test/resources/TestUDTF.jar
0
spark-sql>
```

## How was this patch tested?

manual tests
```sql
spark-sql> add jar /Users/yumwang/spark/sql/hive/src/test/resources/TestUDTF.jar;
ADD JAR /Users/yumwang/spark/sql/hive/src/test/resources/TestUDTF.jar
spark-sql>
```

Closes #22747 from wangyum/AddJarCommand.

Authored-by: Yuming Wang <yumwang@ebay.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-10-18 09:19:42 -07:00
Sean Owen 734c6af0dd [SPARK-24601][FOLLOWUP] Update Jackson to 2.9.6 in Kinesis
## What changes were proposed in this pull request?

Also update Kinesis SDK's Jackson to match Spark's

## How was this patch tested?

Existing tests, including Kinesis ones, which ought to be hereby triggered.
This was uncovered, I believe, in https://github.com/apache/spark/pull/22729#issuecomment-430666080

Closes #22757 from srowen/SPARK-24601.2.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-10-18 07:00:00 -05:00
Russell Spitzer c3eaee7765 [SPARK-25003][PYSPARK] Use SessionExtensions in Pyspark
Master

## What changes were proposed in this pull request?

Previously Pyspark used the private constructor for SparkSession when
building that object. This resulted in a SparkSession without checking
the sql.extensions parameter for additional session extensions. To fix
this we instead use the Session.builder() path as SparkR uses, this
loads the extensions and allows their use in PySpark.

## How was this patch tested?

An integration test was added which mimics the Scala test for the same feature.

Please review http://spark.apache.org/contributing.html before opening a pull request.

Closes #21990 from RussellSpitzer/SPARK-25003-master.

Authored-by: Russell Spitzer <Russell.Spitzer@gmail.com>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-10-18 12:29:09 +08:00
Marcelo Vanzin 7d425b190a [SPARK-20327][YARN] Follow up: fix resource request tests on Hadoop 3.
The test fix is to allocate a `Resource` object only after the resource
types have been initialized. Otherwise the YARN classes get in a weird
state and throw a different exception than expected, because the resource
has a different view of the registered resources.

I also removed a test for a null resource since that seems unnecessary
and made the fix more complicated.

All the other changes are just cleanup; basically simplify the tests by
defining what is being tested and deriving the resource type registration
and the SparkConf from that data, instead of having redundant definitions
in the tests.

Ran tests with Hadoop 3 (and also without it).

Closes #22751 from vanzin/SPARK-20327.fix.

Authored-by: Marcelo Vanzin <vanzin@cloudera.com>
Signed-off-by: Imran Rashid <irashid@cloudera.com>
2018-10-17 10:40:47 -05:00
Gengliang Wang 24f5bbd770 [SPARK-25735][CORE][MINOR] Improve start-thriftserver.sh: print clean usage and exit with code 1
## What changes were proposed in this pull request?
Currently if we run
```
sh start-thriftserver.sh -h
```

we get
```
...
Thrift server options:
2018-10-15 21:45:39 INFO HiveThriftServer2:54 - Starting SparkContext
2018-10-15 21:45:40 INFO SparkContext:54 - Running Spark version 2.3.2
2018-10-15 21:45:40 WARN NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
2018-10-15 21:45:40 ERROR SparkContext:91 - Error initializing SparkContext.
org.apache.spark.SparkException: A master URL must be set in your configuration
at org.apache.spark.SparkContext.<init>(SparkContext.scala:367)
at org.apache.spark.SparkContext$.getOrCreate(SparkContext.scala:2493)
at org.apache.spark.sql.SparkSession$Builder$$anonfun$7.apply(SparkSession.scala:934)
at org.apache.spark.sql.SparkSession$Builder$$anonfun$7.apply(SparkSession.scala:925)
at scala.Option.getOrElse(Option.scala:121)
at org.apache.spark.sql.SparkSession$Builder.getOrCreate(SparkSession.scala:925)
at org.apache.spark.sql.hive.thriftserver.SparkSQLEnv$.init(SparkSQLEnv.scala:48)
at org.apache.spark.sql.hive.thriftserver.HiveThriftServer2$.main(HiveThriftServer2.scala:79)
at org.apache.spark.sql.hive.thriftserver.HiveThriftServer2.main(HiveThriftServer2.scala)
2018-10-15 21:45:40 ERROR Utils:91 - Uncaught exception in thread main
```

After fix, the usage output is clean:
```
...
Thrift server options:
--hiveconf <property=value> Use value for given property
```

Also exit with code 1, to follow other scripts(this is the behavior of parsing option `-h` for other linux commands as well).

## How was this patch tested?

Manual test.

Closes #22727 from gengliangwang/stsUsage.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-10-17 09:56:17 -05:00
Gengliang Wang 1901f06211 [SPARK-25741][WEBUI] Long URLs are not rendered properly in web UI
## What changes were proposed in this pull request?

When the URL for description column in the table of job/stage page is long, WebUI doesn't render it properly.

![beforefix](https://user-images.githubusercontent.com/1097932/47009242-9323ba00-d16e-11e8-8262-0848d814442a.jpeg)

Both job and stage page are using the class `name-link` for the description URL,  so change the style of `a.name-link` to fix it.

## How was this patch tested?

Manual test on my local:
![afterfix](https://user-images.githubusercontent.com/1097932/47009269-a46cc680-d16e-11e8-9ff5-0318a20db634.jpeg)

Closes #22744 from gengliangwang/fixUILink.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-10-17 09:51:41 -05:00
Vladimir Kuriatkov e5b8136f47 [SPARK-21402][SQL] Fix java array of structs deserialization
When deserializing values of ArrayType with struct elements in java beans, fields of structs get mixed up.
I suggest using struct data types retrieved from resolved input data instead of inferring them from java beans.

## What changes were proposed in this pull request?

MapObjects expression is used to map array elements to java beans. Struct type of elements is inferred from java bean structure and ends up with mixed up field order.
I used UnresolvedMapObjects instead of MapObjects, which allows to provide element type for MapObjects during analysis based on the resolved input data, not on the java bean.

## How was this patch tested?

Added a test case.
Built complete project on travis.

michalsenkyr cloud-fan marmbrus liancheng

Closes #22708 from vofque/SPARK-21402.

Lead-authored-by: Vladimir Kuriatkov <vofque@gmail.com>
Co-authored-by: Vladimir Kuriatkov <Vladimir_Kuriatkov@epam.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-10-17 22:13:05 +08:00
Gengliang Wang 2ab4473bed [SPARK-25754][DOC] Change CDN for MathJax
## What changes were proposed in this pull request?

Currently when we open our doc site: https://spark.apache.org/docs/latest/index.html , there is one warning
![image](https://user-images.githubusercontent.com/1097932/47065926-2b757980-d217-11e8-868f-02ce73f513ae.png)

This PR is to change the CDN as per the migration tips: https://www.mathjax.org/cdn-shutting-down/

This is very very trivial. But it would be good to follow the suggestion from MathJax team and remove the warning, in case one day the original CDN is no longer available.

## How was this patch tested?

Manual check.

Closes #22753 from gengliangwang/migrateMathJax.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-10-17 06:52:00 -05:00
Wenchen Fan 9690eba16e [SPARK-25680][SQL] SQL execution listener shouldn't happen on execution thread
## What changes were proposed in this pull request?

The SQL execution listener framework was created from scratch(see https://github.com/apache/spark/pull/9078). It didn't leverage what we already have in the spark listener framework, and one major problem is, the listener runs on the spark execution thread, which means a bad listener can block spark's query processing.

This PR re-implements the SQL execution listener framework. Now `ExecutionListenerManager` is just a normal spark listener, which watches the `SparkListenerSQLExecutionEnd` events and post events to the
user-provided SQL execution listeners.

## How was this patch tested?

existing tests.

Closes #22674 from cloud-fan/listener.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-10-17 16:06:07 +08:00
彭灿00244106 e9332f600e [SQL][CATALYST][MINOR] update some error comments
## What changes were proposed in this pull request?

this PR correct some comment error:
1. change from "as low a possible" to "as low as possible" in RewriteDistinctAggregates.scala
2. delete redundant word “with” in HiveTableScanExec’s  doExecute()  method

## How was this patch tested?

Existing unit tests.

Closes #22694 from CarolinePeng/update_comment.

Authored-by: 彭灿00244106 <00244106@zte.intra>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-10-17 12:45:13 +08:00
Takeshi Yamamuro a9f685bb70 [SPARK-25734][SQL] Literal should have a value corresponding to dataType
## What changes were proposed in this pull request?
`Literal.value` should have a value a value corresponding to `dataType`. This pr added code to verify it and fixed the existing tests to do so.

## How was this patch tested?
Modified the existing tests.

Closes #22724 from maropu/SPARK-25734.

Authored-by: Takeshi Yamamuro <yamamuro@apache.org>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-10-17 11:02:39 +08:00
Maxim Gekk e9af9460bc [SPARK-25393][SQL] Adding new function from_csv()
## What changes were proposed in this pull request?

The PR adds new function `from_csv()` similar to `from_json()` to parse columns with CSV strings. I added the following methods:
```Scala
def from_csv(e: Column, schema: StructType, options: Map[String, String]): Column
```
and this signature to call it from Python, R and Java:
```Scala
def from_csv(e: Column, schema: String, options: java.util.Map[String, String]): Column
```

## How was this patch tested?

Added new test suites `CsvExpressionsSuite`, `CsvFunctionsSuite` and sql tests.

Closes #22379 from MaxGekk/from_csv.

Lead-authored-by: Maxim Gekk <maxim.gekk@databricks.com>
Co-authored-by: Maxim Gekk <max.gekk@gmail.com>
Co-authored-by: Hyukjin Kwon <gurwls223@gmail.com>
Co-authored-by: hyukjinkwon <gurwls223@apache.org>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-10-17 09:32:05 +08:00
Dilip Biswal 9d4dd7992b [SPARK-25631][SPARK-25632][SQL][TEST] Improve the test runtime of KafkaRDDSuite
## What changes were proposed in this pull request?
Set a reasonable poll timeout thats used while consuming topics/partitions from kafka. In the
absence of it, a default of 2 minute is used as the timeout values. And all the negative tests take a minimum of 2 minute to execute.

After this change, we save about 4 minutes in this suite.

## How was this patch tested?
Test fix.

Closes #22670 from dilipbiswal/SPARK-25631.

Authored-by: Dilip Biswal <dbiswal@us.ibm.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-10-16 17:49:40 -05:00
Stavros Kontopoulos bd2c447131 [SPARK-25394][CORE] Add an application status metrics source
- Exposes several metrics regarding application status as a source, useful to scrape them via jmx instead of mining the metrics rest api.  Example use case: prometheus + jmx exporter.
- Metrics are gathered when a job ends at the AppStatusListener side, could be more fine-grained but most metrics like tasks completed are also counted by executors. More metrics could be exposed in the future to avoid scraping executors in some scenarios.
- a config option `spark.app.status.metrics.enabled` is added to disable/enable these metrics, by default they are disabled.

This was manually tested with jmx source enabled and prometheus server on k8s:
![metrics](https://user-images.githubusercontent.com/7945591/45300945-63064d00-b518-11e8-812a-d9b4155ba0c0.png)
In the next pic the job delay is shown for repeated pi calculation (Spark action).
![pi](https://user-images.githubusercontent.com/7945591/45329927-89a1a380-b56b-11e8-9cc1-5e76cb83969f.png)

Closes #22381 from skonto/add_app_status_metrics.

Authored-by: Stavros Kontopoulos <stavros.kontopoulos@lightbend.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2018-10-16 14:58:26 -07:00
Sean Owen 703e6da1ec [SPARK-25705][BUILD][STREAMING][TEST-MAVEN] Remove Kafka 0.8 integration
## What changes were proposed in this pull request?

Remove Kafka 0.8 integration

## How was this patch tested?

Existing tests, build scripts

Closes #22703 from srowen/SPARK-25705.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-10-16 09:10:24 -05:00
Dongjoon Hyun 2c664edc06 [SPARK-25579][SQL] Use quoted attribute names if needed in pushed ORC predicates
## What changes were proposed in this pull request?

This PR aims to fix an ORC performance regression at Spark 2.4.0 RCs from Spark 2.3.2. Currently, for column names with `.`, the pushed predicates are ignored.

**Test Data**
```scala
scala> val df = spark.range(Int.MaxValue).sample(0.2).toDF("col.with.dot")
scala> df.write.mode("overwrite").orc("/tmp/orc")
```

**Spark 2.3.2**
```scala
scala> spark.sql("set spark.sql.orc.impl=native")
scala> spark.sql("set spark.sql.orc.filterPushdown=true")
scala> spark.time(spark.read.orc("/tmp/orc").where("`col.with.dot` < 10").show)
+------------+
|col.with.dot|
+------------+
|           5|
|           7|
|           8|
+------------+

Time taken: 1542 ms

scala> spark.time(spark.read.orc("/tmp/orc").where("`col.with.dot` < 10").show)
+------------+
|col.with.dot|
+------------+
|           5|
|           7|
|           8|
+------------+

Time taken: 152 ms
```

**Spark 2.4.0 RC3**
```scala
scala> spark.time(spark.read.orc("/tmp/orc").where("`col.with.dot` < 10").show)
+------------+
|col.with.dot|
+------------+
|           5|
|           7|
|           8|
+------------+

Time taken: 4074 ms

scala> spark.time(spark.read.orc("/tmp/orc").where("`col.with.dot` < 10").show)
+------------+
|col.with.dot|
+------------+
|           5|
|           7|
|           8|
+------------+

Time taken: 1771 ms
```

## How was this patch tested?

Pass the Jenkins with a newly added test case.

Closes #22597 from dongjoon-hyun/SPARK-25579.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-10-16 20:30:23 +08:00
Wenchen Fan e028fd3aed [SPARK-25736][SQL][TEST] add tests to verify the behavior of multi-column count
## What changes were proposed in this pull request?

AFAIK multi-column count is not widely supported by the mainstream databases(postgres doesn't support), and the SQL standard doesn't define it clearly, as near as I can tell.

Since Spark supports it, we should clearly document the current behavior and add tests to verify it.

## How was this patch tested?

N/A

Closes #22728 from cloud-fan/doc.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-10-16 15:13:01 +08:00
Yuming Wang 5c7f6b6636 [SPARK-25629][TEST] Reduce ParquetFilterSuite: filter pushdown test time costs in Jenkins
## What changes were proposed in this pull request?

Only test these 4 cases is enough:
be2238fb50/sql/core/src/main/scala/org/apache/spark/sql/execution/datasources/parquet/ParquetWriteSupport.scala (L269-L279)

## How was this patch tested?

Manual tests on my local machine.
before:
```
- filter pushdown - decimal (13 seconds, 683 milliseconds)
```
after:
```
- filter pushdown - decimal (9 seconds, 713 milliseconds)
```

Closes #22636 from wangyum/SPARK-25629.

Authored-by: Yuming Wang <yumwang@ebay.com>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-10-16 12:30:02 +08:00
Imran Rashid fdaa99897a [SPARK-25738][SQL] Fix LOAD DATA INPATH for hdfs port
## What changes were proposed in this pull request?

LOAD DATA INPATH didn't work if the defaultFS included a port for hdfs.
Handling this just requires a small change to use the correct URI
constructor.

## How was this patch tested?

Added a unit test, ran all tests via jenkins

Closes #22733 from squito/SPARK-25738.

Authored-by: Imran Rashid <irashid@cloudera.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2018-10-15 18:34:30 -07:00
gatorsmile 4cee191c04 [SPARK-25674][FOLLOW-UP] Update the stats for each ColumnarBatch
## What changes were proposed in this pull request?
This PR is a follow-up of https://github.com/apache/spark/pull/22594 . This alternative can avoid the unneeded computation in the hot code path.

- For row-based scan, we keep the original way.
- For the columnar scan, we just need to update the stats after each batch.

## How was this patch tested?
N/A

Closes #22731 from gatorsmile/udpateStatsFileScanRDD.

Authored-by: gatorsmile <gatorsmile@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-10-16 08:58:29 +08:00
Ilan Filonenko 6c9c84ffb9 [SPARK-23257][K8S] Kerberos Support for Spark on K8S
## What changes were proposed in this pull request?
This is the work on setting up Secure HDFS interaction with Spark-on-K8S.
The architecture is discussed in this community-wide google [doc](https://docs.google.com/document/d/1RBnXD9jMDjGonOdKJ2bA1lN4AAV_1RwpU_ewFuCNWKg)
This initiative can be broken down into 4 Stages

**STAGE 1**
- [x] Detecting `HADOOP_CONF_DIR` environmental variable and using Config Maps to store all Hadoop config files locally, while also setting `HADOOP_CONF_DIR` locally in the driver / executors

**STAGE 2**
- [x] Grabbing `TGT` from `LTC` or using keytabs+principle and creating a `DT` that will be mounted as a secret or using a pre-populated secret

**STAGE 3**
- [x] Driver

**STAGE 4**
- [x] Executor

## How was this patch tested?
Locally tested on a single-noded, pseudo-distributed Kerberized Hadoop Cluster
- [x] E2E Integration tests https://github.com/apache/spark/pull/22608
- [ ] Unit tests

## Docs and Error Handling?
- [x] Docs
- [x] Error Handling

## Contribution Credit
kimoonkim skonto

Closes #21669 from ifilonenko/secure-hdfs.

Lead-authored-by: Ilan Filonenko <if56@cornell.edu>
Co-authored-by: Ilan Filonenko <ifilondz@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2018-10-15 15:48:51 -07:00
SongYadong 0820484ba1 [SPARK-25716][SQL][MINOR] remove unnecessary collection operation in valid constraints generation
## What changes were proposed in this pull request?

Project logical operator generates valid constraints using two opposite operations. It substracts child constraints from all constraints, than union child constraints again. I think it may be not necessary.
Aggregate operator has the same problem with Project.

This PR try to remove these two opposite collection operations.

## How was this patch tested?

Related unit tests:
ProjectEstimationSuite
CollapseProjectSuite
PushProjectThroughUnionSuite
UnsafeProjectionBenchmark
GeneratedProjectionSuite
CodeGeneratorWithInterpretedFallbackSuite
TakeOrderedAndProjectSuite
GenerateUnsafeProjectionSuite
BucketedRandomProjectionLSHSuite
RemoveRedundantAliasAndProjectSuite
AggregateBenchmark
AggregateOptimizeSuite
AggregateEstimationSuite
DecimalAggregatesSuite
DateFrameAggregateSuite
ObjectHashAggregateSuite
TwoLevelAggregateHashMapSuite
ObjectHashAggregateExecBenchmark
SingleLevelAggregateHaspMapSuite
TypedImperativeAggregateSuite
RewriteDistinctAggregatesSuite
HashAggregationQuerySuite
HashAggregationQueryWithControlledFallbackSuite
TypedImperativeAggregateSuite
TwoLevelAggregateHashMapWithVectorizedMapSuite

Closes #22706 from SongYadong/generate_constraints.

Authored-by: SongYadong <song.yadong1@zte.com.cn>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2018-10-15 15:45:40 -07:00
Marco Gaido 56247c1d17 [SPARK-25727][FOLLOWUP] Move outputOrdering to case class field for InMemoryRelation
## What changes were proposed in this pull request?

The PR addresses [the comment](https://github.com/apache/spark/pull/22715#discussion_r225024084) in the previous one. `outputOrdering` becomes a field of `InMemoryRelation`.

## How was this patch tested?

existing UTs

Closes #22726 from mgaido91/SPARK-25727_followup.

Authored-by: Marco Gaido <marcogaido91@gmail.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2018-10-15 10:12:45 -07:00
gatorsmile 9426fd0c24 [SPARK-25372][YARN][K8S][FOLLOW-UP] Deprecate and generalize keytab / principal config
## What changes were proposed in this pull request?
Update the next version of Spark from 2.5 to 3.0

## How was this patch tested?
N/A

Closes #22717 from gatorsmile/followupSPARK-25372.

Authored-by: gatorsmile <gatorsmile@gmail.com>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-10-14 15:20:01 +08:00
gatorsmile 6c3f2c6a6a
[SPARK-25727][SQL] Add outputOrdering to otherCopyArgs in InMemoryRelation
## What changes were proposed in this pull request?
Add `outputOrdering ` to `otherCopyArgs` in InMemoryRelation so that this field will be copied when we doing the tree transformation.

```
    val data = Seq(100).toDF("count").cache()
    data.queryExecution.optimizedPlan.toJSON
```

The above code can generate the following error:

```
assertion failed: InMemoryRelation fields: output, cacheBuilder, statsOfPlanToCache, outputOrdering, values: List(count#178), CachedRDDBuilder(true,10000,StorageLevel(disk, memory, deserialized, 1 replicas),*(1) Project [value#176 AS count#178]
+- LocalTableScan [value#176]
,None), Statistics(sizeInBytes=12.0 B, hints=none)
java.lang.AssertionError: assertion failed: InMemoryRelation fields: output, cacheBuilder, statsOfPlanToCache, outputOrdering, values: List(count#178), CachedRDDBuilder(true,10000,StorageLevel(disk, memory, deserialized, 1 replicas),*(1) Project [value#176 AS count#178]
+- LocalTableScan [value#176]
,None), Statistics(sizeInBytes=12.0 B, hints=none)
	at scala.Predef$.assert(Predef.scala:170)
	at org.apache.spark.sql.catalyst.trees.TreeNode.jsonFields(TreeNode.scala:611)
	at org.apache.spark.sql.catalyst.trees.TreeNode.org$apache$spark$sql$catalyst$trees$TreeNode$$collectJsonValue$1(TreeNode.scala:599)
	at org.apache.spark.sql.catalyst.trees.TreeNode.jsonValue(TreeNode.scala:604)
	at org.apache.spark.sql.catalyst.trees.TreeNode.toJSON(TreeNode.scala:590)
```

## How was this patch tested?

Added a test

Closes #22715 from gatorsmile/copyArgs1.

Authored-by: gatorsmile <gatorsmile@gmail.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-10-13 22:10:17 -07:00
Dongjoon Hyun 6bbceb9fef
[SPARK-25726][SQL][TEST] Fix flaky test in SaveIntoDataSourceCommandSuite
## What changes were proposed in this pull request?

[SPARK-22479](https://github.com/apache/spark/pull/19708/files#diff-5c22ac5160d3c9d81225c5dd86265d27R31) adds a test case which sometimes fails because the used password string `123` matches `41230802`. This PR aims to fix the flakiness.

- https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/97343/consoleFull

```scala
SaveIntoDataSourceCommandSuite:
- simpleString is redacted *** FAILED ***
"SaveIntoDataSourceCommand .org.apache.spark.sql.execution.datasources.jdbc.JdbcRelationProvider41230802, Map(password -> *********(redacted), url -> *********(redacted), driver -> mydriver), ErrorIfExists
+- Range (0, 1, step=1, splits=Some(2))
" contained "123" (SaveIntoDataSourceCommandSuite.scala:42)
```

## How was this patch tested?

Pass the Jenkins with the updated test case

Closes #22716 from dongjoon-hyun/SPARK-25726.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-10-13 18:01:28 -07:00