Commit graph

2326 commits

Author SHA1 Message Date
NarineK 22226fcc92 [SPARK-15110] [SPARKR] Implement repartitionByColumn for SparkR DataFrames
## What changes were proposed in this pull request?

Implement repartitionByColumn on DataFrame.
This will allow us to run R functions on each partition identified by column groups with dapply() method.

## How was this patch tested?

Unit tests

Author: NarineK <narine.kokhlikyan@us.ibm.com>

Closes #12887 from NarineK/repartitionByColumns.
2016-05-05 12:00:55 -07:00
hyukjinkwon ac12b35d31 [SPARK-15148][SQL] Upgrade Univocity library from 2.0.2 to 2.1.0
## What changes were proposed in this pull request?

https://issues.apache.org/jira/browse/SPARK-15148

Mainly it improves the performance roughtly about 30%-40% according to the [release note](https://github.com/uniVocity/univocity-parsers/releases/tag/v2.1.0). For the details of the purpose is described in the JIRA.

This PR upgrades Univocity library from 2.0.2 to 2.1.0.

## How was this patch tested?

Existing tests should cover this.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #12923 from HyukjinKwon/SPARK-15148.
2016-05-05 11:26:40 -07:00
Wenchen Fan 55cc1c991a [SPARK-14139][SQL] RowEncoder should preserve schema nullability
## What changes were proposed in this pull request?

The problem is: In `RowEncoder`, we use `Invoke` to get the field of an external row, which lose the nullability information. This PR creates a `GetExternalRowField` expression, so that we can preserve the nullability info.

TODO: simplify the null handling logic in `RowEncoder`, to remove so many if branches, in follow-up PR.

## How was this patch tested?

new tests in `RowEncoderSuite`

Note that, This PR takes over https://github.com/apache/spark/pull/11980, with a little simplification, so all credits should go to koertkuipers

Author: Wenchen Fan <wenchen@databricks.com>
Author: Koert Kuipers <koert@tresata.com>

Closes #12364 from cloud-fan/nullable.
2016-05-06 01:08:04 +08:00
Kousuke Saruta 1a9b341581 [SPARK-15132][MINOR][SQL] Debug log for generated code should be printed with proper indentation
## What changes were proposed in this pull request?

Similar to #11990, GenerateOrdering and GenerateColumnAccessor should print debug log for generated code with proper indentation.

## How was this patch tested?

Manually checked.

Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp>

Closes #12908 from sarutak/SPARK-15132.
2016-05-04 22:18:55 -07:00
Tathagata Das bde27b89a2 [SPARK-15131][SQL] Shutdown StateStore management thread when SparkContext has been shutdown
## What changes were proposed in this pull request?

Make sure that whenever the StateStoreCoordinator cannot be contacted, assume that the SparkContext and RpcEnv on the driver has been shutdown, and therefore stop the StateStore management thread, and unload all loaded stores.

## How was this patch tested?

Updated unit tests.

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #12905 from tdas/SPARK-15131.
2016-05-04 21:19:53 -07:00
gatorsmile ef55e46c92 [SPARK-14993][SQL] Fix Partition Discovery Inconsistency when Input is a Path to Parquet File
#### What changes were proposed in this pull request?
When we load a dataset, if we set the path to ```/path/a=1```, we will not take `a` as the partitioning column. However, if we set the path to ```/path/a=1/file.parquet```, we take `a` as the partitioning column and it shows up in the schema.

This PR is to fix the behavior inconsistency issue.

The base path contains a set of paths that are considered as the base dirs of the input datasets. The partitioning discovery logic will make sure it will stop when it reaches any base path.

By default, the paths of the dataset provided by users will be base paths. Below are three typical cases,
**Case 1**```sqlContext.read.parquet("/path/something=true/")```: the base path will be
`/path/something=true/`, and the returned DataFrame will not contain a column of `something`.
**Case 2**```sqlContext.read.parquet("/path/something=true/a.parquet")```: the base path will be
still `/path/something=true/`, and the returned DataFrame will also not contain a column of
`something`.
**Case 3**```sqlContext.read.parquet("/path/")```: the base path will be `/path/`, and the returned
DataFrame will have the column of `something`.

Users also can override the basePath by setting `basePath` in the options to pass the new base
path to the data source. For example,
```sqlContext.read.option("basePath", "/path/").parquet("/path/something=true/")```,
and the returned DataFrame will have the column of `something`.

The related PRs:
- https://github.com/apache/spark/pull/9651
- https://github.com/apache/spark/pull/10211

#### How was this patch tested?
Added a couple of test cases

Author: gatorsmile <gatorsmile@gmail.com>
Author: xiaoli <lixiao1983@gmail.com>
Author: Xiao Li <xiaoli@Xiaos-MacBook-Pro.local>

Closes #12828 from gatorsmile/readPartitionedTable.
2016-05-04 18:47:27 -07:00
Sean Zhong 8fb1463d6a [SPARK-6339][SQL] Supports CREATE TEMPORARY VIEW tableIdentifier AS query
## What changes were proposed in this pull request?

This PR support new SQL syntax CREATE TEMPORARY VIEW.
Like:
```
CREATE TEMPORARY VIEW viewName AS SELECT * from xx
CREATE OR REPLACE TEMPORARY VIEW viewName AS SELECT * from xx
CREATE TEMPORARY VIEW viewName (c1 COMMENT 'blabla', c2 COMMENT 'blabla') AS SELECT * FROM xx
```

## How was this patch tested?

Unit tests.

Author: Sean Zhong <clockfly@gmail.com>

Closes #12872 from clockfly/spark-6399.
2016-05-04 18:27:25 -07:00
sethah b281377647 [MINOR][SQL] Fix typo in DataFrameReader csv documentation
## What changes were proposed in this pull request?
Typo fix

## How was this patch tested?
No tests

My apologies for the tiny PR, but I stumbled across this today and wanted to get it corrected for 2.0.

Author: sethah <seth.hendrickson16@gmail.com>

Closes #12912 from sethah/csv_typo.
2016-05-04 16:46:13 -07:00
Reynold Xin 6ae9fc00ed [SPARK-15126][SQL] RuntimeConfig.set should return Unit
## What changes were proposed in this pull request?
Currently we return RuntimeConfig itself to facilitate chaining. However, it makes the output in interactive environments (e.g. notebooks, scala repl) weird because it'd show the response of calling set as a RuntimeConfig itself.

## How was this patch tested?
Updated unit tests.

Author: Reynold Xin <rxin@databricks.com>

Closes #12902 from rxin/SPARK-15126.
2016-05-04 14:26:05 -07:00
Tathagata Das 0fd3a47484 [SPARK-15103][SQL] Refactored FileCatalog class to allow StreamFileCatalog to infer partitioning
## What changes were proposed in this pull request?

File Stream Sink writes the list of written files in a metadata log. StreamFileCatalog reads the list of the files for processing. However StreamFileCatalog does not infer partitioning like HDFSFileCatalog.

This PR enables that by refactoring HDFSFileCatalog to create an abstract class PartitioningAwareFileCatalog, that has all the functionality to infer partitions from a list of leaf files.
- HDFSFileCatalog has been renamed to ListingFileCatalog and it extends PartitioningAwareFileCatalog by providing a list of leaf files from recursive directory scanning.
- StreamFileCatalog has been renamed to MetadataLogFileCatalog and it extends PartitioningAwareFileCatalog by providing a list of leaf files from the metadata log.
- The above two classes has been moved into their own files as they are not interfaces that should be in fileSourceInterfaces.scala.

## How was this patch tested?
- FileStreamSinkSuite was update to see if partitioning gets inferred, and on reading whether the partitions get pruned correctly based on the query.
- Other unit tests are unchanged and pass as expected.

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #12879 from tdas/SPARK-15103.
2016-05-04 11:02:48 -07:00
Reynold Xin 6274a520fa [SPARK-15115][SQL] Reorganize whole stage codegen benchmark suites
## What changes were proposed in this pull request?
We currently have a single suite that is very large, making it difficult to maintain and play with specific primitives. This patch reorganizes the file by creating multiple benchmark suites in a single package.

Most of the changes are straightforward move of code. On top of the code moving, I did:
1. Use SparkSession instead of SQLContext.
2. Turned most benchmark scenarios into a their own test cases, rather than having multiple scenarios in a single test case, which takes forever to run.

## How was this patch tested?
This is a test only change.

Author: Reynold Xin <rxin@databricks.com>

Closes #12891 from rxin/SPARK-15115.
2016-05-04 11:00:01 -07:00
Liang-Chi Hsieh b85d21fb9d [SPARK-14951] [SQL] Support subexpression elimination in TungstenAggregate
## What changes were proposed in this pull request?

We can support subexpression elimination in TungstenAggregate by using current `EquivalentExpressions` which is already used in subexpression elimination for expression codegen.

However, in wholestage codegen, we can't wrap the common expression's codes in functions as before, we simply generate the code snippets for common expressions. These code snippets are inserted before the common expressions are actually used in generated java codes.

For multiple `TypedAggregateExpression` used in aggregation operator, since their input type should be the same. So their `inputDeserializer` will be the same too. This patch can also reduce redundant input deserialization.

## How was this patch tested?
Existing tests.

Author: Liang-Chi Hsieh <simonh@tw.ibm.com>

Closes #12729 from viirya/subexpr-elimination-tungstenaggregate.
2016-05-04 10:54:51 -07:00
Reynold Xin d864c55cf8 [SPARK-15109][SQL] Accept Dataset[_] in joins
## What changes were proposed in this pull request?
This patch changes the join API in Dataset so they can accept any Dataset, rather than just DataFrames.

## How was this patch tested?
N/A.

Author: Reynold Xin <rxin@databricks.com>

Closes #12886 from rxin/SPARK-15109.
2016-05-04 10:38:27 -07:00
Liwei Lin e597ec6f1c [SPARK-15022][SPARK-15023][SQL][STREAMING] Add support for testing against the ProcessingTime(intervalMS > 0) trigger and ManualClock
## What changes were proposed in this pull request?

Currently in `StreamTest`, we have a `StartStream` which will start a streaming query against trigger `ProcessTime(intervalMS = 0)` and `SystemClock`.

We also need to test cases against `ProcessTime(intervalMS > 0)`, which often requires `ManualClock`.

This patch:
- fixes an issue of `ProcessingTimeExecutor`, where for a batch it should run `batchRunner` only once but might run multiple times under certain conditions;
- adds support for testing against the `ProcessingTime(intervalMS > 0)` trigger and `AdvanceManualClock`, by specifying them as fields for `StartStream`, and by adding an `AdvanceClock` action;
- adds a test, which takes advantage of the new `StartStream` and `AdvanceManualClock`, to test against [PR#[SPARK-14942] Reduce delay between batch construction and execution ](https://github.com/apache/spark/pull/12725).

## How was this patch tested?

N/A

Author: Liwei Lin <lwlin7@gmail.com>

Closes #12797 from lw-lin/add-trigger-test-support.
2016-05-04 10:25:14 -07:00
Cheng Lian f152fae306 [SPARK-14127][SQL] Native "DESC [EXTENDED | FORMATTED] <table>" DDL command
## What changes were proposed in this pull request?

This PR implements native `DESC [EXTENDED | FORMATTED] <table>` DDL command. Sample output:

```
scala> spark.sql("desc extended src").show(100, truncate = false)
+----------------------------+---------------------------------+-------+
|col_name                    |data_type                        |comment|
+----------------------------+---------------------------------+-------+
|key                         |int                              |       |
|value                       |string                           |       |
|                            |                                 |       |
|# Detailed Table Information|CatalogTable(`default`.`src`, ...|       |
+----------------------------+---------------------------------+-------+

scala> spark.sql("desc formatted src").show(100, truncate = false)
+----------------------------+----------------------------------------------------------+-------+
|col_name                    |data_type                                                 |comment|
+----------------------------+----------------------------------------------------------+-------+
|key                         |int                                                       |       |
|value                       |string                                                    |       |
|                            |                                                          |       |
|# Detailed Table Information|                                                          |       |
|Database:                   |default                                                   |       |
|Owner:                      |lian                                                      |       |
|Create Time:                |Mon Jan 04 17:06:00 CST 2016                              |       |
|Last Access Time:           |Thu Jan 01 08:00:00 CST 1970                              |       |
|Location:                   |hdfs://localhost:9000/user/hive/warehouse_hive121/src     |       |
|Table Type:                 |MANAGED                                                   |       |
|Table Parameters:           |                                                          |       |
|  transient_lastDdlTime     |1451898360                                                |       |
|                            |                                                          |       |
|# Storage Information       |                                                          |       |
|SerDe Library:              |org.apache.hadoop.hive.serde2.lazy.LazySimpleSerDe        |       |
|InputFormat:                |org.apache.hadoop.mapred.TextInputFormat                  |       |
|OutputFormat:               |org.apache.hadoop.hive.ql.io.HiveIgnoreKeyTextOutputFormat|       |
|Num Buckets:                |-1                                                        |       |
|Bucket Columns:             |[]                                                        |       |
|Sort Columns:               |[]                                                        |       |
|Storage Desc Parameters:    |                                                          |       |
|  serialization.format      |1                                                         |       |
+----------------------------+----------------------------------------------------------+-------+
```

## How was this patch tested?

A test case is added to `HiveDDLSuite` to check command output.

Author: Cheng Lian <lian@databricks.com>

Closes #12844 from liancheng/spark-14127-desc-table.
2016-05-04 16:44:09 +08:00
Wenchen Fan 6c12e801e8 [SPARK-15029] improve error message for Generate
## What changes were proposed in this pull request?

This PR improve the error message for `Generate` in 3 cases:

1. generator is nested in expressions, e.g. `SELECT explode(list) + 1 FROM tbl`
2. generator appears more than one time in SELECT, e.g. `SELECT explode(list), explode(list) FROM tbl`
3. generator appears in other operator which is not project, e.g. `SELECT * FROM tbl SORT BY explode(list)`

## How was this patch tested?

new tests in `AnalysisErrorSuite`

Author: Wenchen Fan <wenchen@databricks.com>

Closes #12810 from cloud-fan/bug.
2016-05-04 00:10:20 -07:00
Cheng Lian bc3760d405 [SPARK-14237][SQL] De-duplicate partition value appending logic in various buildReader() implementations
## What changes were proposed in this pull request?

Currently, various `FileFormat` data sources share approximately the same code for partition value appending. This PR tries to eliminate this duplication.

A new method `buildReaderWithPartitionValues()` is added to `FileFormat` with a default implementation that appends partition values to `InternalRow`s produced by the reader function returned by `buildReader()`.

Special data sources like Parquet, which implements partition value appending inside `buildReader()` because of the vectorized reader, and the Text data source, which doesn't support partitioning, override `buildReaderWithPartitionValues()` and simply delegate to `buildReader()`.

This PR brings two benefits:

1. Apparently, it de-duplicates partition value appending logic

2. Now the reader function returned by `buildReader()` is only required to produce `InternalRow`s rather than `UnsafeRow`s if the data source doesn't override `buildReaderWithPartitionValues()`.

   Because the safe-to-unsafe conversion is also performed while appending partition values. This makes 3rd-party data sources (e.g. spark-avro) easier to implement since they no longer need to access private APIs involving `UnsafeRow`.

## How was this patch tested?

Existing tests should do the work.

Author: Cheng Lian <lian@databricks.com>

Closes #12866 from liancheng/spark-14237-simplify-partition-values-appending.
2016-05-04 14:16:57 +08:00
Reynold Xin 695f0e9195 [SPARK-15107][SQL] Allow varying # iterations by test case in Benchmark
## What changes were proposed in this pull request?
This patch changes our micro-benchmark util to allow setting different iteration numbers for different test cases. For some of our benchmarks, turning off whole-stage codegen can make the runtime 20X slower, making it very difficult to run a large number of times without substantially shortening the input cardinality.

With this change, I set the default num iterations to 2 for whole stage codegen off, and 5 for whole stage codegen on. I also updated some results.

## How was this patch tested?
N/A - this is a test util.

Author: Reynold Xin <rxin@databricks.com>

Closes #12884 from rxin/SPARK-15107.
2016-05-03 22:56:40 -07:00
Andrew Or 6ba17cd147 [SPARK-14414][SQL] Make DDL exceptions more consistent
## What changes were proposed in this pull request?

Just a bunch of small tweaks on DDL exception messages.

## How was this patch tested?

`DDLCommandSuite` et al.

Author: Andrew Or <andrew@databricks.com>

Closes #12853 from andrewor14/make-exceptions-consistent.
2016-05-03 18:07:53 -07:00
Koert Kuipers 9e4928b7e0 [SPARK-15097][SQL] make Dataset.sqlContext a stable identifier for imports
## What changes were proposed in this pull request?
Make Dataset.sqlContext a lazy val so that its a stable identifier and can be used for imports.
Now this works again:
import someDataset.sqlContext.implicits._

## How was this patch tested?
Add unit test to DatasetSuite that uses the import show above.

Author: Koert Kuipers <koert@tresata.com>

Closes #12877 from koertkuipers/feat-sqlcontext-stable-import.
2016-05-03 18:06:35 -07:00
Sandeep Singh a8d56f5388 [SPARK-14422][SQL] Improve handling of optional configs in SQLConf
## What changes were proposed in this pull request?
Create a new API for handling Optional Configs in SQLConf.
Right now `getConf` for `OptionalConfigEntry[T]` returns value of type `T`, if doesn't exist throws an exception. Add new method `getOptionalConf`(suggestions on naming) which will now returns value of type `Option[T]`(so if doesn't exist it returns `None`).

## How was this patch tested?
Add test and ran tests locally.

Author: Sandeep Singh <sandeep@techaddict.me>

Closes #12846 from techaddict/SPARK-14422.
2016-05-03 18:02:57 -07:00
Andrew Or 588cac414a [SPARK-15073][SQL] Hide SparkSession constructor from the public
## What changes were proposed in this pull request?

Users should use the builder pattern instead.

## How was this patch tested?

Jenks.

Author: Andrew Or <andrew@databricks.com>

Closes #12873 from andrewor14/spark-session-constructor.
2016-05-03 13:47:58 -07:00
yzhou2001 a4aed71719 [SPARK-14521] [SQL] StackOverflowError in Kryo when executing TPC-DS
## What changes were proposed in this pull request?

Observed stackOverflowError in Kryo when executing TPC-DS Query27. Spark thrift server disables kryo reference tracking (if not specified in conf). When "spark.kryo.referenceTracking" is set to true explicitly in spark-defaults.conf, query executes successfully. The root cause is that the TaskMemoryManager inside MemoryConsumer and LongToUnsafeRowMap were not transient and thus were serialized and broadcast around from within LongHashedRelation, which could potentially cause circular reference inside Kryo. But the TaskMemoryManager is per task and should not be passed around at the first place. This fix makes it transient.

## How was this patch tested?
core/test, hive/test, sql/test, catalyst/test, dev/lint-scala, org.apache.spark.sql.hive.execution.HiveCompatibilitySuite, dev/scalastyle,
manual test of TBC-DS Query 27 with 1GB data but without the "limit 100" which would cause a NPE due to SPARK-14752.

Author: yzhou2001 <yzhou_1999@yahoo.com>

Closes #12598 from yzhou2001/master.
2016-05-03 13:41:04 -07:00
Sandeep Singh ca813330c7 [SPARK-15087][CORE][SQL] Remove AccumulatorV2.localValue and keep only value
## What changes were proposed in this pull request?
Remove AccumulatorV2.localValue and keep only value

## How was this patch tested?
existing tests

Author: Sandeep Singh <sandeep@techaddict.me>

Closes #12865 from techaddict/SPARK-15087.
2016-05-03 11:38:43 -07:00
Shixiong Zhu b545d75219 [SPARK-14860][TESTS] Create a new Waiter in reset to bypass an issue of ScalaTest's Waiter.wait
## What changes were proposed in this pull request?

This PR updates `QueryStatusCollector.reset` to create Waiter instead of calling `await(1 milliseconds)` to bypass an ScalaTest's issue that Waiter.await may block forever.

## How was this patch tested?

I created a local stress test to call codes in `test("event ordering")` 100 times. It cannot pass without this patch.

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #12623 from zsxwing/flaky-test.
2016-05-03 11:16:55 -07:00
Tathagata Das 4ad492c403 [SPARK-14716][SQL] Added support for partitioning in FileStreamSink
# What changes were proposed in this pull request?

Support partitioning in the file stream sink. This is implemented using a new, but simpler code path for writing parquet files - both unpartitioned and partitioned. This new code path does not use Output Committers, as we will eventually write the file names to the metadata log for "committing" them.

This patch duplicates < 100 LOC from the WriterContainer. But its far simpler that WriterContainer as it does not involve output committing. In addition, it introduces the new APIs in FileFormat and OutputWriterFactory in an attempt to simplify the APIs (not have Job in the `FileFormat` API, not have bucket and other stuff in the `OutputWriterFactory.newInstance()` ).

# Tests
- New unit tests to test the FileStreamSinkWriter for partitioned and unpartitioned files
- New unit test to partially test the FileStreamSink for partitioned files (does not test recovery of partition column data, as that requires change in the StreamFileCatalog, future PR).
- Updated FileStressSuite to test number of records read from partitioned output files.

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #12409 from tdas/streaming-partitioned-parquet.
2016-05-03 10:58:26 -07:00
Liwei Lin 5bd9a2f697 [SPARK-14884][SQL][STREAMING][WEBUI] Fix call site for continuous queries
## What changes were proposed in this pull request?

Since we've been processing continuous queries in separate threads, the call sites are then `run at <unknown>:0`. It's not wrong but provides very little information; in addition, we can not distinguish two queries only from their call sites.

This patch fixes this.

### Before
[Jobs Tab]
![s1a](https://cloud.githubusercontent.com/assets/15843379/14766101/a47246b2-0a30-11e6-8d81-06a9a600113b.png)
[SQL Tab]
![s1b](https://cloud.githubusercontent.com/assets/15843379/14766102/a4750226-0a30-11e6-9ada-773d977d902b.png)
### After
[Jobs Tab]
![s2a](https://cloud.githubusercontent.com/assets/15843379/14766104/a89705b6-0a30-11e6-9830-0d40ec68527b.png)
[SQL Tab]
![s2b](https://cloud.githubusercontent.com/assets/15843379/14766103/a8966728-0a30-11e6-8e4d-c2e326400478.png)

## How was this patch tested?

Manually checks - see screenshots above.

Author: Liwei Lin <lwlin7@gmail.com>

Closes #12650 from lw-lin/fix-call-site.
2016-05-03 10:10:25 -07:00
Reynold Xin 5503e453ba [SPARK-15088] [SQL] Remove SparkSqlSerializer
## What changes were proposed in this pull request?
This patch removes SparkSqlSerializer. I believe this is now dead code.

## How was this patch tested?
Removed a test case related to it.

Author: Reynold Xin <rxin@databricks.com>

Closes #12864 from rxin/SPARK-15088.
2016-05-03 09:43:47 -07:00
Reynold Xin d557a5e01e [SPARK-15081] Move AccumulatorV2 and subclasses into util package
## What changes were proposed in this pull request?
This patch moves AccumulatorV2 and subclasses into util package.

## How was this patch tested?
Updated relevant tests.

Author: Reynold Xin <rxin@databricks.com>

Closes #12863 from rxin/SPARK-15081.
2016-05-03 19:45:12 +08:00
Andrew Ray d8f528ceb6 [SPARK-13749][SQL][FOLLOW-UP] Faster pivot implementation for many distinct values with two phase aggregation
## What changes were proposed in this pull request?

This is a follow up PR for #11583. It makes 3 lazy vals into just vals and adds unit test coverage.

## How was this patch tested?

Existing unit tests and additional unit tests.

Author: Andrew Ray <ray.andrew@gmail.com>

Closes #12861 from aray/fast-pivot-follow-up.
2016-05-02 22:47:32 -07:00
Shixiong Zhu 4e3685ae5e [SPARK-15077][SQL] Use a fair lock to avoid thread starvation in StreamExecution
## What changes were proposed in this pull request?

Right now `StreamExecution.awaitBatchLock` uses an unfair lock. `StreamExecution.awaitOffset` may run too long and fail some test because `StreamExecution.constructNextBatch` keeps getting the lock.

See: https://amplab.cs.berkeley.edu/jenkins/job/spark-master-test-sbt-hadoop-2.4/865/testReport/junit/org.apache.spark.sql.streaming/FileStreamSourceStressTestSuite/file_source_stress_test/

This PR uses a fair ReentrantLock to resolve the thread starvation issue.

## How was this patch tested?

Modified `FileStreamSourceStressTestSuite.test("file source stress test")` to run the test codes 100 times locally. It always fails because of timeout without this patch.

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #12852 from zsxwing/SPARK-15077.
2016-05-02 18:27:49 -07:00
Herman van Hovell 1c19c2769e [SPARK-15047][SQL] Cleanup SQL Parser
## What changes were proposed in this pull request?
This PR addresses a few minor issues in SQL parser:

- Removes some unused rules and keywords in the grammar.
- Removes code path for fallback SQL parsing (was needed for Hive native parsing).
- Use `UnresolvedGenerator` instead of hard-coding `Explode` & `JsonTuple`.
- Adds a more generic way of creating error messages for unsupported Hive features.
- Use `visitFunctionName` as much as possible.
- Interpret a `CatalogColumn`'s `DataType` directly instead of parsing it again.

## How was this patch tested?
Existing tests.

Author: Herman van Hovell <hvanhovell@questtec.nl>

Closes #12826 from hvanhovell/SPARK-15047.
2016-05-02 18:12:31 -07:00
Liwei Lin 35d9c8aa69 [SPARK-14747][SQL] Add assertStreaming/assertNoneStreaming checks in DataFrameWriter
## Problem

If an end user happens to write code mixed with continuous-query-oriented methods and non-continuous-query-oriented methods:

```scala
ctx.read
   .format("text")
   .stream("...")  // continuous query
   .write
   .text("...")    // non-continuous query; should be startStream() here
```

He/she would get this somehow confusing exception:

>
Exception in thread "main" java.lang.AssertionError: assertion failed: No plan for FileSource[./continuous_query_test_input]
	at scala.Predef$.assert(Predef.scala:170)
	at org.apache.spark.sql.catalyst.planning.QueryPlanner.plan(QueryPlanner.scala:59)
	at org.apache.spark.sql.catalyst.planning.QueryPlanner.planLater(QueryPlanner.scala:54)
	at ...

## What changes were proposed in this pull request?

This PR adds checks for continuous-query-oriented methods and non-continuous-query-oriented methods in `DataFrameWriter`:

<table>
<tr>
	<td align="center"></td>
	<td align="center"><strong>can be called on continuous query?</strong></td>
	<td align="center"><strong>can be called on non-continuous query?</strong></td>
</tr>
<tr>
	<td align="center">mode</td>
	<td align="center"></td>
	<td align="center">yes</td>
</tr>
<tr>
	<td align="center">trigger</td>
	<td align="center">yes</td>
	<td align="center"></td>
</tr>
<tr>
	<td align="center">format</td>
	<td align="center">yes</td>
	<td align="center">yes</td>
</tr>
<tr>
	<td align="center">option/options</td>
	<td align="center">yes</td>
	<td align="center">yes</td>
</tr>
<tr>
	<td align="center">partitionBy</td>
	<td align="center">yes</td>
	<td align="center">yes</td>
</tr>
<tr>
	<td align="center">bucketBy</td>
	<td align="center"></td>
	<td align="center">yes</td>
</tr>
<tr>
	<td align="center">sortBy</td>
	<td align="center"></td>
	<td align="center">yes</td>
</tr>
<tr>
	<td align="center">save</td>
	<td align="center"></td>
	<td align="center">yes</td>
</tr>
<tr>
	<td align="center">queryName</td>
	<td align="center">yes</td>
	<td align="center"></td>
</tr>
<tr>
	<td align="center">startStream</td>
	<td align="center">yes</td>
	<td align="center"></td>
</tr>
<tr>
	<td align="center">insertInto</td>
	<td align="center"></td>
	<td align="center">yes</td>
</tr>
<tr>
	<td align="center">saveAsTable</td>
	<td align="center"></td>
	<td align="center">yes</td>
</tr>
<tr>
	<td align="center">jdbc</td>
	<td align="center"></td>
	<td align="center">yes</td>
</tr>
<tr>
	<td align="center">json</td>
	<td align="center"></td>
	<td align="center">yes</td>
</tr>
<tr>
	<td align="center">parquet</td>
	<td align="center"></td>
	<td align="center">yes</td>
</tr>
<tr>
	<td align="center">orc</td>
	<td align="center"></td>
	<td align="center">yes</td>
</tr>
<tr>
	<td align="center">text</td>
	<td align="center"></td>
	<td align="center">yes</td>
</tr>
<tr>
	<td align="center">csv</td>
	<td align="center"></td>
	<td align="center">yes</td>
</tr>
</table>

After this PR's change, the friendly exception would be:
>
Exception in thread "main" org.apache.spark.sql.AnalysisException: text() can only be called on non-continuous queries;
	at org.apache.spark.sql.DataFrameWriter.assertNotStreaming(DataFrameWriter.scala:678)
	at org.apache.spark.sql.DataFrameWriter.text(DataFrameWriter.scala:629)
	at ss.SSDemo$.main(SSDemo.scala:47)

## How was this patch tested?

dedicated unit tests were added

Author: Liwei Lin <lwlin7@gmail.com>

Closes #12521 from lw-lin/dataframe-writer-check.
2016-05-02 16:48:20 -07:00
Herman van Hovell f362363d14 [SPARK-14785] [SQL] Support correlated scalar subqueries
## What changes were proposed in this pull request?
In this PR we add support for correlated scalar subqueries. An example of such a query is:
```SQL
select * from tbl1 a where a.value > (select max(value) from tbl2 b where b.key = a.key)
```
The implementation adds the `RewriteCorrelatedScalarSubquery` rule to the Optimizer. This rule plans these subqueries using `LEFT OUTER` joins. It currently supports rewrites for `Project`, `Aggregate` & `Filter` logical plans.

I could not find a well defined semantics for the use of scalar subqueries in an `Aggregate`. The current implementation currently evaluates the scalar subquery *before* aggregation. This means that you either have to make scalar subquery part of the grouping expression, or that you have to aggregate it further on. I am open to suggestions on this.

The implementation currently forces the uniqueness of a scalar subquery by enforcing that it is aggregated and that the resulting column is wrapped in an `AggregateExpression`.

## How was this patch tested?
Added tests to `SubquerySuite`.

Author: Herman van Hovell <hvanhovell@questtec.nl>

Closes #12822 from hvanhovell/SPARK-14785.
2016-05-02 16:32:31 -07:00
poolis 917d05f43b [SPARK-12928][SQL] Oracle FLOAT datatype is not properly handled when reading via JDBC
The contribution is my original work and that I license the work to the project under the project's open source license.

Author: poolis <gmichalopoulos@gmail.com>
Author: Greg Michalopoulos <gmichalopoulos@gmail.com>

Closes #10899 from poolis/spark-12928.
2016-05-02 16:15:07 -07:00
Reynold Xin ca1b219858 [SPARK-15052][SQL] Use builder pattern to create SparkSession
## What changes were proposed in this pull request?
This patch creates a builder pattern for creating SparkSession. The new code is unused and mostly deadcode. I'm putting it up here for feedback.

There are a few TODOs that can be done as follow-up pull requests:
- [ ] Update tests to use this
- [ ] Update examples to use this
- [ ] Clean up SQLContext code w.r.t. this one (i.e. SparkSession shouldn't call into SQLContext.getOrCreate; it should be the other way around)
- [ ] Remove SparkSession.withHiveSupport
- [ ] Disable the old constructor (by making it private) so the only way to start a SparkSession is through this builder pattern

## How was this patch tested?
Part of the future pull request is to clean this up and switch existing tests to use this.

Author: Reynold Xin <rxin@databricks.com>

Closes #12830 from rxin/sparksession-builder.
2016-05-02 15:27:16 -07:00
Pete Robbins 8a1ce4899f [SPARK-13745] [SQL] Support columnar in memory representation on Big Endian platforms
## What changes were proposed in this pull request?

parquet datasource and ColumnarBatch tests fail on big-endian platforms This patch adds support for the little-endian byte arrays being correctly interpreted on a big-endian platform

## How was this patch tested?

Spark test builds ran on big endian z/Linux and regression build on little endian amd64

Author: Pete Robbins <robbinspg@gmail.com>

Closes #12397 from robbinspg/master.
2016-05-02 13:16:46 -07:00
Davies Liu 95e372141a [SPARK-14781] [SQL] support nested predicate subquery
## What changes were proposed in this pull request?

In order to support nested predicate subquery, this PR introduce an internal join type ExistenceJoin, which will emit all the rows from left, plus an additional column, which presents there are any rows matched from right or not (it's not null-aware right now). This additional column could be used to replace the subquery in Filter.

In theory, all the predicate subquery could use this join type, but it's slower than LeftSemi and LeftAnti, so it's only used for nested subquery (subquery inside OR).

For example, the following SQL:
```sql
SELECT a FROM t  WHERE EXISTS (select 0) OR EXISTS (select 1)
```

This PR also fix a bug in predicate subquery push down through join (they should not).

Nested null-aware subquery is still not supported. For example,   `a > 3 OR b NOT IN (select bb from t)`

After this, we could run TPCDS query Q10, Q35, Q45

## How was this patch tested?

Added unit tests.

Author: Davies Liu <davies@databricks.com>

Closes #12820 from davies/or_exists.
2016-05-02 12:58:59 -07:00
Shixiong Zhu a35a67a83d [SPARK-14579][SQL] Fix the race condition in StreamExecution.processAllAvailable again
## What changes were proposed in this pull request?

#12339 didn't fix the race condition. MemorySinkSuite is still flaky: https://amplab.cs.berkeley.edu/jenkins/job/spark-master-test-maven-hadoop-2.2/814/testReport/junit/org.apache.spark.sql.streaming/MemorySinkSuite/registering_as_a_table/

Here is an execution order to reproduce it.

| Time        |Thread 1           | MicroBatchThread  |
|:-------------:|:-------------:|:-----:|
| 1 | |  `MemorySink.getOffset` |
| 2 | |  availableOffsets ++= newData (availableOffsets is not changed here)  |
| 3 | addData(newData)      |   |
| 4 | Set `noNewData` to `false` in  processAllAvailable |  |
| 5 | | `dataAvailable` returns `false`   |
| 6 | | noNewData = true |
| 7 | `noNewData` is true so just return | |
| 8 |  assert results and fail | |
| 9 |   | `dataAvailable` returns true so process the new batch |

This PR expands the scope of `awaitBatchLock.synchronized` to eliminate the above race.

## How was this patch tested?

test("stress test"). It always failed before this patch. And it will pass after applying this patch. Ignore this test in the PR as it takes several minutes to finish.

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #12582 from zsxwing/SPARK-14579-2.
2016-05-02 11:28:21 -07:00
Andrew Ray 9927441868 [SPARK-13749][SQL] Faster pivot implementation for many distinct values with two phase aggregation
## What changes were proposed in this pull request?

The existing implementation of pivot translates into a single aggregation with one aggregate per distinct pivot value. When the number of distinct pivot values is large (say 1000+) this can get extremely slow since each input value gets evaluated on every aggregate even though it only affects the value of one of them.

I'm proposing an alternate strategy for when there are 10+ (somewhat arbitrary threshold) distinct pivot values. We do two phases of aggregation. In the first we group by the grouping columns plus the pivot column and perform the specified aggregations (one or sometimes more). In the second aggregation we group by the grouping columns and use the new (non public) PivotFirst aggregate that rearranges the outputs of the first aggregation into an array indexed by the pivot value. Finally we do a project to extract the array entries into the appropriate output column.

## How was this patch tested?

Additional unit tests in DataFramePivotSuite and manual larger scale testing.

Author: Andrew Ray <ray.andrew@gmail.com>

Closes #11583 from aray/fast-pivot.
2016-05-02 11:12:55 -07:00
Reynold Xin 44da8d8eab [SPARK-15049] Rename NewAccumulator to AccumulatorV2
## What changes were proposed in this pull request?
NewAccumulator isn't the best name if we ever come up with v3 of the API.

## How was this patch tested?
Updated tests to reflect the change.

Author: Reynold Xin <rxin@databricks.com>

Closes #12827 from rxin/SPARK-15049.
2016-05-01 20:21:02 -07:00
hyukjinkwon a832cef112 [SPARK-13425][SQL] Documentation for CSV datasource options
## What changes were proposed in this pull request?

This PR adds the explanation and documentation for CSV options for reading and writing.

## How was this patch tested?

Style tests with `./dev/run_tests` for documentation style.

Author: hyukjinkwon <gurwls223@gmail.com>
Author: Hyukjin Kwon <gurwls223@gmail.com>

Closes #12817 from HyukjinKwon/SPARK-13425.
2016-05-01 19:05:20 -07:00
Wenchen Fan 90787de864 [SPARK-15033][SQL] fix a flaky test in CachedTableSuite
## What changes were proposed in this pull request?

This is caused by https://github.com/apache/spark/pull/12776, which removes the `synchronized` from all methods in `AccumulatorContext`.

However, a test in `CachedTableSuite` synchronize on `AccumulatorContext` and expecting no one else can change it, which is not true anymore.

This PR update that test to not require to lock on `AccumulatorContext`.

## How was this patch tested?

N/A

Author: Wenchen Fan <wenchen@databricks.com>

Closes #12811 from cloud-fan/flaky.
2016-04-30 20:28:22 -07:00
Hossein 507bea5ca6 [SPARK-14143] Options for parsing NaNs, Infinity and nulls for numeric types
1. Adds the following options for parsing NaNs: nanValue

2. Adds the following options for parsing infinity: positiveInf, negativeInf.

`TypeCast.castTo` is unit tested and an end-to-end test is added to `CSVSuite`

Author: Hossein <hossein@databricks.com>

Closes #11947 from falaki/SPARK-14143.
2016-04-30 18:12:03 -07:00
Yin Huai 0182d9599d [SPARK-15034][SPARK-15035][SPARK-15036][SQL] Use spark.sql.warehouse.dir as the warehouse location
This PR contains three changes:
1. We will use spark.sql.warehouse.dir set warehouse location. We will not use hive.metastore.warehouse.dir.
2. SessionCatalog needs to set the location to default db. Otherwise, when creating a table in SparkSession without hive support, the default db's path will be an empty string.
3. When we create a database, we need to make the path qualified.

Existing tests and new tests

Author: Yin Huai <yhuai@databricks.com>

Closes #12812 from yhuai/warehouse.
2016-04-30 18:04:42 -07:00
Reynold Xin 8dc3987d09 [SPARK-15028][SQL] Remove HiveSessionState.setDefaultOverrideConfs
## What changes were proposed in this pull request?
This patch removes some code that are no longer relevant -- mainly HiveSessionState.setDefaultOverrideConfs.

## How was this patch tested?
N/A

Author: Reynold Xin <rxin@databricks.com>

Closes #12806 from rxin/SPARK-15028.
2016-04-30 01:32:00 -07:00
hyukjinkwon 4bac703eb9 [SPARK-13667][SQL] Support for specifying custom date format for date and timestamp types at CSV datasource.
## What changes were proposed in this pull request?

This PR adds the support to specify custom date format for `DateType` and `TimestampType`.

For `TimestampType`, this uses the given format to infer schema and also to convert the values
For `DateType`, this uses the given format to convert the values.
If the `dateFormat` is not given, then it works with `DateTimeUtils.stringToTime()` for backwords compatibility.
When it's given, then it uses `SimpleDateFormat` for parsing data.

In addition, `IntegerType`, `DoubleType` and `LongType` have a higher priority than `TimestampType` in type inference. This means even if the given format is `yyyy` or `yyyy.MM`, it will be inferred as `IntegerType` or `DoubleType`. Since it is type inference, I think it is okay to give such precedences.

In addition, I renamed `csv.CSVInferSchema` to `csv.InferSchema` as JSON datasource has `json.InferSchema`. Although they have the same names, I did this because I thought the parent package name can still differentiate each.  Accordingly, the suite name was also changed from `CSVInferSchemaSuite` to `InferSchemaSuite`.

## How was this patch tested?

unit tests are used and `./dev/run_tests` for coding style tests.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #11550 from HyukjinKwon/SPARK-13667.
2016-04-29 22:52:21 -07:00
Yin Huai ac41fc648d [SPARK-14591][SQL] Remove DataTypeParser and add more keywords to the nonReserved list.
## What changes were proposed in this pull request?
CatalystSqlParser can parse data types. So, we do not need to have an individual DataTypeParser.

## How was this patch tested?
Existing tests

Author: Yin Huai <yhuai@databricks.com>

Closes #12796 from yhuai/removeDataTypeParser.
2016-04-29 22:49:12 -07:00
Andrew Or 66773eb8a5 [SPARK-15012][SQL] Simplify configuration API further
## What changes were proposed in this pull request?

1. Remove all the `spark.setConf` etc. Just expose `spark.conf`
2. Make `spark.conf` take in things set in the core `SparkConf` as well, otherwise users may get confused

This was done for both the Python and Scala APIs.

## How was this patch tested?
`SQLConfSuite`, python tests.

This one fixes the failed tests in #12787

Closes #12787

Author: Andrew Or <andrew@databricks.com>
Author: Yin Huai <yhuai@databricks.com>

Closes #12798 from yhuai/conf-api.
2016-04-29 20:46:07 -07:00
Herman van Hovell 83061be697 [SPARK-14858] [SQL] Enable subquery pushdown
The previous subquery PRs did not include support for pushing subqueries used in filters (`WHERE`/`HAVING`) down. This PR adds this support. For example :
```scala
range(0, 10).registerTempTable("a")
range(5, 15).registerTempTable("b")
range(7, 25).registerTempTable("c")
range(3, 12).registerTempTable("d")
val plan = sql("select * from a join b on a.id = b.id left join c on c.id = b.id where a.id in (select id from d)")
plan.explain(true)
```
Leads to the following Analyzed & Optimized plans:
```
== Parsed Logical Plan ==
...

== Analyzed Logical Plan ==
id: bigint, id: bigint, id: bigint
Project [id#0L,id#4L,id#8L]
+- Filter predicate-subquery#16 [(id#0L = id#12L)]
   :  +- SubqueryAlias predicate-subquery#16 [(id#0L = id#12L)]
   :     +- Project [id#12L]
   :        +- SubqueryAlias d
   :           +- Range 3, 12, 1, 8, [id#12L]
   +- Join LeftOuter, Some((id#8L = id#4L))
      :- Join Inner, Some((id#0L = id#4L))
      :  :- SubqueryAlias a
      :  :  +- Range 0, 10, 1, 8, [id#0L]
      :  +- SubqueryAlias b
      :     +- Range 5, 15, 1, 8, [id#4L]
      +- SubqueryAlias c
         +- Range 7, 25, 1, 8, [id#8L]

== Optimized Logical Plan ==
Join LeftOuter, Some((id#8L = id#4L))
:- Join Inner, Some((id#0L = id#4L))
:  :- Join LeftSemi, Some((id#0L = id#12L))
:  :  :- Range 0, 10, 1, 8, [id#0L]
:  :  +- Range 3, 12, 1, 8, [id#12L]
:  +- Range 5, 15, 1, 8, [id#4L]
+- Range 7, 25, 1, 8, [id#8L]

== Physical Plan ==
...
```
I have also taken the opportunity to move quite a bit of code around:
- Rewriting subqueris and pulling out correlated predicated from subqueries has been moved into the analyzer. The analyzer transforms `Exists` and `InSubQuery` into `PredicateSubquery` expressions. A PredicateSubquery exposes the 'join' expressions and the proper references. This makes things like type coercion, optimization and planning easier to do.
- I have added support for `Aggregate` plans in subqueries. Any correlated expressions will be added to the grouping expressions. I have removed support for `Union` plans, since pulling in an outer reference from beneath a Union has no value (a filtered value could easily be part of another Union child).
- Resolution of subqueries is now done using `OuterReference`s. These are used to wrap any outer reference; this makes the identification of these references easier, and also makes dealing with duplicate attributes in the outer and inner plans easier. The resolution of subqueries initially used a resolution loop which would alternate between calling the analyzer and trying to resolve the outer references. We now use a dedicated analyzer which uses a special rule for outer reference resolution.

These changes are a stepping stone for enabling correlated scalar subqueries, enabling all Hive tests & allowing us to use predicate subqueries anywhere.

Current tests and added test cases in FilterPushdownSuite.

Author: Herman van Hovell <hvanhovell@questtec.nl>

Closes #12720 from hvanhovell/SPARK-14858.
2016-04-29 16:50:12 -07:00