Commit graph

147 commits

Author SHA1 Message Date
MechCoder 22732e1eca [SPARK-7605] [MLLIB] [PYSPARK] Python API for ElementwiseProduct
Python API for org.apache.spark.mllib.feature.ElementwiseProduct

Author: MechCoder <manojkumarsivaraj334@gmail.com>

Closes #6346 from MechCoder/spark-7605 and squashes the following commits:

79d1ef5 [MechCoder] Consistent and support list / array types
5f81d81 [MechCoder] [SPARK-7605] [MLlib] Python API for ElementwiseProduct
2015-06-17 22:08:38 -07:00
MechCoder 6765ef98df [SPARK-6390] [SQL] [MLlib] Port MatrixUDT to PySpark
MatrixUDT was recently coded in scala. This has been ported to PySpark

Author: MechCoder <manojkumarsivaraj334@gmail.com>

Closes #6354 from MechCoder/spark-6390 and squashes the following commits:

fc4dc1e [MechCoder] Better error message
c940a44 [MechCoder] Added test
aa9c391 [MechCoder] Add pyUDT to MatrixUDT
62a2a7d [MechCoder] [SPARK-6390] Port MatrixUDT to PySpark
2015-06-17 11:10:16 -07:00
Yanbo Liang ca998757e8 [SPARK-7916] [MLLIB] MLlib Python doc parity check for classification and regression
Check then make the MLlib Python classification and regression doc to be as complete as the Scala doc.

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #6460 from yanboliang/spark-7916 and squashes the following commits:

f8deda4 [Yanbo Liang] trigger jenkins
6dc4d99 [Yanbo Liang] address comments
ce2a43e [Yanbo Liang] truncate too long line and remove extra sparse
3eaf6ad [Yanbo Liang] MLlib Python doc parity check for classification and regression
2015-06-16 14:30:30 -07:00
MechCoder 5aa804f3c6 [SPARK-7639] [PYSPARK] [MLLIB] Python API for KernelDensity
Python API for KernelDensity

Author: MechCoder <manojkumarsivaraj334@gmail.com>

Closes #6387 from MechCoder/spark-7639 and squashes the following commits:

17abc62 [MechCoder] add tests
2de6540 [MechCoder] style tests
bf4acc0 [MechCoder] Added doctests
84359d5 [MechCoder] [SPARK-7639] Python API for KernelDensity
2015-06-06 14:52:14 -07:00
MechCoder 452eb82dd7 [SPARK-8032] [PYSPARK] Make version checking for NumPy in MLlib more robust
The current checking does version `1.x' is less than `1.4' this will fail if x has greater than 1 digit, since x > 4, however `1.x` < `1.4`

It fails in my system since I have version `1.10` :P

Author: MechCoder <manojkumarsivaraj334@gmail.com>

Closes #6579 from MechCoder/np_ver and squashes the following commits:

15430f8 [MechCoder] fix syntax error
893fb7e [MechCoder] remove equal to
e35f0d4 [MechCoder] minor
e89376c [MechCoder] Better checking
22703dd [MechCoder] [SPARK-8032] Make version checking for NumPy in MLlib more robust
2015-06-02 23:24:47 -07:00
Yanbo Liang 1617363fbb [SPARK-7918] [MLLIB] MLlib Python doc parity check for evaluation and feature
Check then make the MLlib Python evaluation and feature doc to be as complete as the Scala doc.

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #6461 from yanboliang/spark-7918 and squashes the following commits:

940e3f1 [Yanbo Liang] truncate too long line and remove extra sparse
a80ae58 [Yanbo Liang] MLlib Python doc parity check for evaluation and feature
2015-05-30 16:24:07 -07:00
Michael Nazario 1c5b19827a [SPARK-7899] [PYSPARK] Fix Python 3 pyspark/sql/types module conflict
This PR makes the types module in `pyspark/sql/types` work with pylint static analysis by removing the dynamic naming of the `pyspark/sql/_types` module to `pyspark/sql/types`.

Tests are now loaded using `$PYSPARK_DRIVER_PYTHON -m module` rather than `$PYSPARK_DRIVER_PYTHON module.py`. The old method adds the location of `module.py` to `sys.path`, so this change prevents accidental use of relative paths in Python.

Author: Michael Nazario <mnazario@palantir.com>

Closes #6439 from mnazario/feature/SPARK-7899 and squashes the following commits:

366ef30 [Michael Nazario] Remove hack on random.py
bb8b04d [Michael Nazario] Make doctests consistent with other tests
6ee4f75 [Michael Nazario] Change test scripts to use "-m"
673528f [Michael Nazario] Move _types back to types
2015-05-29 14:13:44 -07:00
Xiangrui Meng db95137897 [SPARK-7922] [MLLIB] use DataFrames for user/item factors in ALSModel
Expose user/item factors in DataFrames. This is to be more consistent with the pipeline API. It also helps maintain consistent APIs across languages. This PR also removed fitting params from `ALSModel`.

coderxiang

Author: Xiangrui Meng <meng@databricks.com>

Closes #6468 from mengxr/SPARK-7922 and squashes the following commits:

7bfb1d5 [Xiangrui Meng] update ALSModel in PySpark
1ba5607 [Xiangrui Meng] use DataFrames for user/item factors in ALS
2015-05-28 22:38:38 -07:00
Yanbo Liang 98a46f9dff [SPARK-6094] [MLLIB] Add MultilabelMetrics in PySpark/MLlib
Add MultilabelMetrics in PySpark/MLlib

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #6276 from yanboliang/spark-6094 and squashes the following commits:

b8e3343 [Yanbo Liang] Add MultilabelMetrics in PySpark/MLlib
2015-05-20 07:55:51 -07:00
Xiangrui Meng 1ecfac6e38 [SPARK-6657] [PYSPARK] Fix doc warnings
Fixed the following warnings in `make clean html` under `python/docs`:

~~~
/Users/meng/src/spark/python/pyspark/mllib/evaluation.py:docstring of pyspark.mllib.evaluation.RankingMetrics.ndcgAt:3: ERROR: Unexpected indentation.
/Users/meng/src/spark/python/pyspark/mllib/evaluation.py:docstring of pyspark.mllib.evaluation.RankingMetrics.ndcgAt:4: WARNING: Block quote ends without a blank line; unexpected unindent.
/Users/meng/src/spark/python/pyspark/mllib/fpm.py:docstring of pyspark.mllib.fpm.FPGrowth.train:3: ERROR: Unexpected indentation.
/Users/meng/src/spark/python/pyspark/mllib/fpm.py:docstring of pyspark.mllib.fpm.FPGrowth.train:4: WARNING: Block quote ends without a blank line; unexpected unindent.
/Users/meng/src/spark/python/pyspark/sql/__init__.py:docstring of pyspark.sql.DataFrame.replace:16: WARNING: Field list ends without a blank line; unexpected unindent.
/Users/meng/src/spark/python/pyspark/streaming/kafka.py:docstring of pyspark.streaming.kafka.KafkaUtils.createRDD:8: ERROR: Unexpected indentation.
/Users/meng/src/spark/python/pyspark/streaming/kafka.py:docstring of pyspark.streaming.kafka.KafkaUtils.createRDD:9: WARNING: Block quote ends without a blank line; unexpected unindent.
~~~

davies

Author: Xiangrui Meng <meng@databricks.com>

Closes #6221 from mengxr/SPARK-6657 and squashes the following commits:

e3f83fe [Xiangrui Meng] fix sql and streaming doc warnings
2b4371e [Xiangrui Meng] fix mllib python doc warnings
2015-05-18 08:35:14 -07:00
FlytxtRnD 8f4aaba0e4 [SPARK-7651] [MLLIB] [PYSPARK] GMM predict, predictSoft should raise error on bad input
In the Python API for Gaussian Mixture Model, predict() and predictSoft() methods should raise an error when the input argument is not an RDD.

Author: FlytxtRnD <meethu.mathew@flytxt.com>

Closes #6180 from FlytxtRnD/GmmPredictException and squashes the following commits:

4b6aa11 [FlytxtRnD] Raise error if the input to predict()/predictSoft() is not an RDD
2015-05-15 10:43:18 -07:00
Yanbo Liang 94761485b2 [SPARK-6258] [MLLIB] GaussianMixture Python API parity check
Implement Python API for major disparities of GaussianMixture cluster algorithm between Scala & Python
```scala
GaussianMixture
    setInitialModel
GaussianMixtureModel
    k
```

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #6087 from yanboliang/spark-6258 and squashes the following commits:

b3af21c [Yanbo Liang] fix typo
2b645c1 [Yanbo Liang] fix doc
638b4b7 [Yanbo Liang] address comments
b5bcade [Yanbo Liang] GaussianMixture Python API parity check
2015-05-15 00:18:39 -07:00
Yanbo Liang 042dda3c5c [SPARK-6092] [MLLIB] Add RankingMetrics in PySpark/MLlib
Author: Yanbo Liang <ybliang8@gmail.com>

Closes #6044 from yanboliang/spark-6092 and squashes the following commits:

726a9b1 [Yanbo Liang] add newRankingMetrics
33f649c [Yanbo Liang] Add RankingMetrics in PySpark/MLlib
2015-05-11 09:14:20 -07:00
Yanbo Liang bf7e81a51c [SPARK-6091] [MLLIB] Add MulticlassMetrics in PySpark/MLlib
https://issues.apache.org/jira/browse/SPARK-6091

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #6011 from yanboliang/spark-6091 and squashes the following commits:

bb3e4ba [Yanbo Liang] trigger jenkins
53c045d [Yanbo Liang] keep compatibility for python 2.6
972d5ac [Yanbo Liang] Add MulticlassMetrics in PySpark/MLlib
2015-05-10 00:57:14 -07:00
Yanbo Liang 35c9599b94 [SPARK-5913] [MLLIB] Python API for ChiSqSelector
Add a Python API for mllib.feature.ChiSqSelector
https://issues.apache.org/jira/browse/SPARK-5913

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #5939 from yanboliang/spark-5913 and squashes the following commits:

cdaac99 [Yanbo Liang] Python API for ChiSqSelector
2015-05-08 15:48:39 -07:00
MechCoder 347a329a36 [SPARK-7328] [MLLIB] [PYSPARK] Pyspark.mllib.linalg.Vectors: Missing items
Add
1. Class methods squared_dist
3. parse
4. norm
5. numNonzeros
6. copy

I made a few vectorizations wrt squared_dist and dot as well. I have added support for SparseMatrix serialization in a separate PR (https://github.com/apache/spark/pull/5775) and plan to complete support for Matrices in another PR.

Author: MechCoder <manojkumarsivaraj334@gmail.com>

Closes #5872 from MechCoder/local_linalg_api and squashes the following commits:

a8ff1e0 [MechCoder] minor
ce3e53e [MechCoder] Add error message for parser
1bd3c04 [MechCoder] Robust parser and removed unnecessary methods
f779561 [MechCoder] [SPARK-7328] Pyspark.mllib.linalg.Vectors: Missing items
2015-05-07 14:02:05 -07:00
Yanbo Liang 1712a7c705 [SPARK-6093] [MLLIB] Add RegressionMetrics in PySpark/MLlib
https://issues.apache.org/jira/browse/SPARK-6093

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #5941 from yanboliang/spark-6093 and squashes the following commits:

6934af3 [Yanbo Liang] change to @property
aac3bc5 [Yanbo Liang] Add RegressionMetrics in PySpark/MLlib
2015-05-07 11:18:32 -07:00
Yanbo Liang 7b1457839b [SPARK-6267] [MLLIB] Python API for IsotonicRegression
https://issues.apache.org/jira/browse/SPARK-6267

Author: Yanbo Liang <ybliang8@gmail.com>
Author: Xiangrui Meng <meng@databricks.com>

Closes #5890 from yanboliang/spark-6267 and squashes the following commits:

f20541d [Yanbo Liang] Merge pull request #3 from mengxr/SPARK-6267
7f202f9 [Xiangrui Meng] use Vector to have the best Python 2&3 compatibility
4bccfee [Yanbo Liang] fix doctest
ec09412 [Yanbo Liang] fix typos
8214bbb [Yanbo Liang] fix code style
5c8ebe5 [Yanbo Liang] Python API for IsotonicRegression
2015-05-05 22:57:13 -07:00
Hrishikesh Subramonian 5995ada96b [SPARK-6612] [MLLIB] [PYSPARK] Python KMeans parity
The following items are added to Python kmeans:

kmeans - setEpsilon, setInitializationSteps
KMeansModel - computeCost, k

Author: Hrishikesh Subramonian <hrishikesh.subramonian@flytxt.com>

Closes #5647 from FlytxtRnD/newPyKmeansAPI and squashes the following commits:

b9e451b [Hrishikesh Subramonian] set seed to fixed value in doc test
5fd3ced [Hrishikesh Subramonian] doc test corrections
20b3c68 [Hrishikesh Subramonian] python 3 fixes
4d4e695 [Hrishikesh Subramonian] added arguments in python tests
21eb84c [Hrishikesh Subramonian] Python Kmeans - setEpsilon, setInitializationSteps, k and computeCost added.
2015-05-05 07:57:39 -07:00
MechCoder 5ab652cdb8 [SPARK-7202] [MLLIB] [PYSPARK] Add SparseMatrixPickler to SerDe
Utilities for pickling and unpickling SparseMatrices using SerDe

Author: MechCoder <manojkumarsivaraj334@gmail.com>

Closes #5775 from MechCoder/spark-7202 and squashes the following commits:

7e689dc [MechCoder] [SPARK-7202] Add SparseMatrixPickler to SerDe
2015-05-05 07:53:11 -07:00
MechCoder c24aeb6a31 [SPARK-6257] [PYSPARK] [MLLIB] MLlib API missing items in Recommendation
Adds

rank, recommendUsers and RecommendProducts to MatrixFactorizationModel in PySpark.

Author: MechCoder <manojkumarsivaraj334@gmail.com>

Closes #5807 from MechCoder/spark-6257 and squashes the following commits:

09629c6 [MechCoder] doc
953b326 [MechCoder] [SPARK-6257] MLlib API missing items in Recommendation
2015-04-30 23:51:00 -07:00
Joseph K. Bradley a8aeadb7d4 [SPARK-7208] [ML] [PYTHON] Added Matrix, SparseMatrix to __all__ list in linalg.py
Added Matrix, SparseMatrix to __all__ list in linalg.py

CC: mengxr

Author: Joseph K. Bradley <joseph@databricks.com>

Closes #5759 from jkbradley/SPARK-7208 and squashes the following commits:

deb51a2 [Joseph K. Bradley] Added Matrix, SparseMatrix to __all__ list in linalg.py
2015-04-28 21:15:47 -07:00
Yanbo Liang f4f39981f4 [SPARK-6827] [MLLIB] Wrap FPGrowthModel.freqItemsets and make it consistent with Java API
Make PySpark ```FPGrowthModel.freqItemsets``` consistent with Java/Scala API like ```MatrixFactorizationModel.userFeatures```
It return a RDD with each tuple is composed of an array and a long value.
I think it's difficult to implement namedtuples to wrap the output because items of freqItemsets can be any type with arbitrary length which is tedious to impelement corresponding SerDe function.

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #5614 from yanboliang/spark-6827 and squashes the following commits:

da8c404 [Yanbo Liang] use namedtuple
5532e78 [Yanbo Liang] Wrap FPGrowthModel.freqItemsets and make it consistent with Java API
2015-04-22 17:22:26 -07:00
Reynold Xin 3134c3fe49 [SPARK-6953] [PySpark] speed up python tests
This PR try to speed up some python tests:

```
tests.py                       144s -> 103s      -41s
mllib/classification.py         24s -> 17s        -7s
mllib/regression.py             27s -> 15s       -12s
mllib/tree.py                   27s -> 13s       -14s
mllib/tests.py                  64s -> 31s       -33s
streaming/tests.py             185s -> 84s      -101s
```
Considering python3, the total saving will be 558s (almost 10 minutes) (core, and streaming run three times, mllib runs twice).

During testing, it will show used time for each test file:
```
Run core tests ...
Running test: pyspark/rdd.py ... ok (22s)
Running test: pyspark/context.py ... ok (16s)
Running test: pyspark/conf.py ... ok (4s)
Running test: pyspark/broadcast.py ... ok (4s)
Running test: pyspark/accumulators.py ... ok (4s)
Running test: pyspark/serializers.py ... ok (6s)
Running test: pyspark/profiler.py ... ok (5s)
Running test: pyspark/shuffle.py ... ok (1s)
Running test: pyspark/tests.py ... ok (103s)   144s
```

Author: Reynold Xin <rxin@databricks.com>
Author: Xiangrui Meng <meng@databricks.com>

Closes #5605 from rxin/python-tests-speed and squashes the following commits:

d08542d [Reynold Xin] Merge pull request #14 from mengxr/SPARK-6953
89321ee [Xiangrui Meng] fix seed in tests
3ad2387 [Reynold Xin] Merge pull request #5427 from davies/python_tests
2015-04-21 17:49:55 -07:00
Xiangrui Meng 686dd742e1 [SPARK-7036][MLLIB] ALS.train should support DataFrames in PySpark
SchemaRDD works with ALS.train in 1.2, so we should continue support DataFrames for compatibility. coderxiang

Author: Xiangrui Meng <meng@databricks.com>

Closes #5619 from mengxr/SPARK-7036 and squashes the following commits:

dfcaf5a [Xiangrui Meng] ALS.train should support DataFrames in PySpark
2015-04-21 16:44:52 -07:00
MechCoder 45c47fa417 [SPARK-6845] [MLlib] [PySpark] Add isTranposed flag to DenseMatrix
Since sparse matrices now support a isTransposed flag for row major data, DenseMatrices should do the same.

Author: MechCoder <manojkumarsivaraj334@gmail.com>

Closes #5455 from MechCoder/spark-6845 and squashes the following commits:

525c370 [MechCoder] minor
004a37f [MechCoder] Cast boolean to int
151f3b6 [MechCoder] [WIP] Add isTransposed to pickle DenseMatrix
cc0b90a [MechCoder] [SPARK-6845] Add isTranposed flag to DenseMatrix
2015-04-21 14:36:50 -07:00
Elisey Zanko 77176619a9 [SPARK-6661] Python type errors should print type, not object
Author: Elisey Zanko <elisey.zanko@gmail.com>

Closes #5361 from 31z4/spark-6661 and squashes the following commits:

73c5d79 [Elisey Zanko] Python type errors should print type, not object
2015-04-20 10:44:09 -07:00
Davies Liu 04e44b37cc [SPARK-4897] [PySpark] Python 3 support
This PR update PySpark to support Python 3 (tested with 3.4).

Known issue: unpickle array from Pyrolite is broken in Python 3, those tests are skipped.

TODO: ec2/spark-ec2.py is not fully tested with python3.

Author: Davies Liu <davies@databricks.com>
Author: twneale <twneale@gmail.com>
Author: Josh Rosen <joshrosen@databricks.com>

Closes #5173 from davies/python3 and squashes the following commits:

d7d6323 [Davies Liu] fix tests
6c52a98 [Davies Liu] fix mllib test
99e334f [Davies Liu] update timeout
b716610 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
cafd5ec [Davies Liu] adddress comments from @mengxr
bf225d7 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
179fc8d [Davies Liu] tuning flaky tests
8c8b957 [Davies Liu] fix ResourceWarning in Python 3
5c57c95 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
4006829 [Davies Liu] fix test
2fc0066 [Davies Liu] add python3 path
71535e9 [Davies Liu] fix xrange and divide
5a55ab4 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
125f12c [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
ed498c8 [Davies Liu] fix compatibility with python 3
820e649 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
e8ce8c9 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
ad7c374 [Davies Liu] fix mllib test and warning
ef1fc2f [Davies Liu] fix tests
4eee14a [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
20112ff [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
59bb492 [Davies Liu] fix tests
1da268c [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
ca0fdd3 [Davies Liu] fix code style
9563a15 [Davies Liu] add imap back for python 2
0b1ec04 [Davies Liu] make python examples work with Python 3
d2fd566 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
a716d34 [Davies Liu] test with python 3.4
f1700e8 [Davies Liu] fix test in python3
671b1db [Davies Liu] fix test in python3
692ff47 [Davies Liu] fix flaky test
7b9699f [Davies Liu] invalidate import cache for Python 3.3+
9c58497 [Davies Liu] fix kill worker
309bfbf [Davies Liu] keep compatibility
5707476 [Davies Liu] cleanup, fix hash of string in 3.3+
8662d5b [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
f53e1f0 [Davies Liu] fix tests
70b6b73 [Davies Liu] compile ec2/spark_ec2.py in python 3
a39167e [Davies Liu] support customize class in __main__
814c77b [Davies Liu] run unittests with python 3
7f4476e [Davies Liu] mllib tests passed
d737924 [Davies Liu] pass ml tests
375ea17 [Davies Liu] SQL tests pass
6cc42a9 [Davies Liu] rename
431a8de [Davies Liu] streaming tests pass
78901a7 [Davies Liu] fix hash of serializer in Python 3
24b2f2e [Davies Liu] pass all RDD tests
35f48fe [Davies Liu] run future again
1eebac2 [Davies Liu] fix conflict in ec2/spark_ec2.py
6e3c21d [Davies Liu] make cloudpickle work with Python3
2fb2db3 [Josh Rosen] Guard more changes behind sys.version; still doesn't run
1aa5e8f [twneale] Turned out `pickle.DictionaryType is dict` == True, so swapped it out
7354371 [twneale] buffer --> memoryview  I'm not super sure if this a valid change, but the 2.7 docs recommend using memoryview over buffer where possible, so hoping it'll work.
b69ccdf [twneale] Uses the pure python pickle._Pickler instead of c-extension _pickle.Pickler. It appears pyspark 2.7 uses the pure python pickler as well, so this shouldn't degrade pickling performance (?).
f40d925 [twneale] xrange --> range
e104215 [twneale] Replaces 2.7 types.InstsanceType with 3.4 `object`....could be horribly wrong depending on how types.InstanceType is used elsewhere in the package--see http://bugs.python.org/issue8206
79de9d0 [twneale] Replaces python2.7 `file` with 3.4 _io.TextIOWrapper
2adb42d [Josh Rosen] Fix up some import differences between Python 2 and 3
854be27 [Josh Rosen] Run `futurize` on Python code:
7c5b4ce [Josh Rosen] Remove Python 3 check in shell.py.
2015-04-16 16:20:57 -07:00
lewuathe fc17661475 [SPARK-6643][MLLIB] Implement StandardScalerModel missing methods
This is the sub-task of SPARK-6254.
Wrap missing method for `StandardScalerModel`.

Author: lewuathe <lewuathe@me.com>

Closes #5310 from Lewuathe/SPARK-6643 and squashes the following commits:

fafd690 [lewuathe] Fix for lint-python
bd31a64 [lewuathe] Merge branch 'master' into SPARK-6643
578f5ee [lewuathe] Remove unnecessary class
a38f155 [lewuathe] Merge master
66bb2ab [lewuathe] Fix typos
82683a0 [lewuathe] [SPARK-6643] Implement StandardScalerModel missing methods
2015-04-12 22:17:16 -07:00
MechCoder e2360810f5 [SPARK-6577] [MLlib] [PySpark] SparseMatrix should be supported in PySpark
Supporting of SparseMatrix in PySpark.

Author: MechCoder <manojkumarsivaraj334@gmail.com>

Closes #5355 from MechCoder/spark-6577 and squashes the following commits:

7492190 [MechCoder] More readable code for densifying
ea2c54b [MechCoder] Check bounds for indexing
454ef2c [MechCoder] Made the following changes 1. Used convert_to_array for array conversion. 2. Used F order for toArray 3. Minor improvements in speed.
db76caf [MechCoder] Add support for CSR matrix
29653e7 [MechCoder] Renamed indices to rowIndices and indptr to colPtrs
b6384fe [MechCoder] [SPARK-6577] SparseMatrix should be supported in PySpark
2015-04-09 23:10:13 -07:00
Yanbo Liang a0411aebee [SPARK-6264] [MLLIB] Support FPGrowth algorithm in Python API
Support FPGrowth algorithm in Python API.
Should we remove "Experimental" which were marked for FPGrowth and FPGrowthModel in Scala? jkbradley

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #5213 from yanboliang/spark-6264 and squashes the following commits:

ed62ead [Yanbo Liang] trigger jenkins
8ce0359 [Yanbo Liang] fix docstring style
544c725 [Yanbo Liang] address comments
a2d7cf7 [Yanbo Liang] add doc for FPGrowth.train()
dcf7d73 [Yanbo Liang] add python doc
b18fd07 [Yanbo Liang] trigger jenkins
2c951b8 [Yanbo Liang] fix typos
7f62c8f [Yanbo Liang] add fpm to __init__.py
b96206a [Yanbo Liang] Support FPGrowth algorithm in Python API
2015-04-09 15:10:10 -07:00
lewuathe fc957dc781 [SPARK-6720][MLLIB] PySpark MultivariateStatisticalSummary unit test for normL1...
... and normL2.
Add test cases to insufficient unit test for `normL1` and `normL2`.

Ref: https://github.com/apache/spark/pull/5359

Author: lewuathe <lewuathe@me.com>

Closes #5374 from Lewuathe/SPARK-6720 and squashes the following commits:

5541b24 [lewuathe] More accurate tests
dc5718c [lewuathe] [SPARK-6720] PySpark MultivariateStatisticalSummary unit test for normL1 and normL2
2015-04-07 14:36:57 -07:00
lewuathe acffc43455 [SPARK-6262][MLLIB]Implement missing methods for MultivariateStatisticalSummary
Add below methods in pyspark for MultivariateStatisticalSummary
- normL1
- normL2

Author: lewuathe <lewuathe@me.com>

Closes #5359 from Lewuathe/SPARK-6262 and squashes the following commits:

cbe439e [lewuathe] Implement missing methods for MultivariateStatisticalSummary
2015-04-05 16:13:31 -07:00
lewuathe 512a2f191a [SPARK-6615][MLLIB] Python API for Word2Vec
This is the sub-task of SPARK-6254.
Wrap missing method for `Word2Vec` and `Word2VecModel`.

Author: lewuathe <lewuathe@me.com>

Closes #5296 from Lewuathe/SPARK-6615 and squashes the following commits:

f14c304 [lewuathe] Reorder tests
1d326b9 [lewuathe] Merge master
e2bedfb [lewuathe] Modify test cases
afb866d [lewuathe] [SPARK-6615] Python API for Word2Vec
2015-04-03 09:49:50 -07:00
Xiangrui Meng 4815bc2128 [SPARK-6660][MLLIB] pythonToJava doesn't recognize object arrays
davies

Author: Xiangrui Meng <meng@databricks.com>

Closes #5318 from mengxr/SPARK-6660 and squashes the following commits:

0f66ec2 [Xiangrui Meng] recognize object arrays
ad8c42f [Xiangrui Meng] add a test for SPARK-6660
2015-04-01 18:17:07 -07:00
MechCoder 2fa3b47dbf [SPARK-6576] [MLlib] [PySpark] DenseMatrix in PySpark should support indexing
Support indexing in DenseMatrices in PySpark

Author: MechCoder <manojkumarsivaraj334@gmail.com>

Closes #5232 from MechCoder/SPARK-6576 and squashes the following commits:

a735078 [MechCoder] Change bounds
a062025 [MechCoder] Matrices are stored in column order
7917bc1 [MechCoder] [SPARK-6576] DenseMatrix in PySpark should support indexing
2015-04-01 17:03:39 -07:00
Xiangrui Meng ccafd757ed [SPARK-6642][MLLIB] use 1.2 lambda scaling and remove addImplicit from NormalEquation
This PR changes lambda scaling from number of users/items to number of explicit ratings. The latter is the behavior in 1.2. Slight refactor of NormalEquation to make it independent of ALS models. srowen codexiang

Author: Xiangrui Meng <meng@databricks.com>

Closes #5314 from mengxr/SPARK-6642 and squashes the following commits:

dc655a1 [Xiangrui Meng] relax python tests
f410df2 [Xiangrui Meng] use 1.2 scaling and remove addImplicit from NormalEquation
2015-04-01 16:47:18 -07:00
Joseph K. Bradley fb25e8c7f4 [SPARK-6657] [Python] [Docs] fixed python doc build warnings
fixed python doc build warnings

CC whomever wants to review: rxin mengxr davies

Author: Joseph K. Bradley <joseph@databricks.com>

Closes #5317 from jkbradley/python-doc-warnings and squashes the following commits:

4cd43c2 [Joseph K. Bradley] fixed python doc build warnings
2015-04-01 15:15:47 -07:00
Xiangrui Meng 2275acce7b [SPARK-6651][MLLIB] delegate dense vector arithmetics to the underlying numpy array
Users should be able to use numpy operators directly on dense vectors. davies atalwalkar

Author: Xiangrui Meng <meng@databricks.com>

Closes #5312 from mengxr/SPARK-6651 and squashes the following commits:

e665c5c [Xiangrui Meng] wrap the result in a dense vector
23dfca3 [Xiangrui Meng] delegate dense vector arithmetics to the underlying numpy array
2015-04-01 13:29:04 -07:00
Yanbo Liang b5bd75d90a [SPARK-6255] [MLLIB] Support multiclass classification in Python API
Python API parity check for classification and multiclass classification support, major disparities need to be added for Python:
```scala
LogisticRegressionWithLBFGS
    setNumClasses
    setValidateData
LogisticRegressionModel
    getThreshold
    numClasses
    numFeatures
SVMWithSGD
    setValidateData
SVMModel
    getThreshold
```
For users the greatest benefit in this PR is multiclass classification was supported by Python API.
Users can train multiclass classification model and use it to predict in pyspark.

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #5137 from yanboliang/spark-6255 and squashes the following commits:

0bd531e [Yanbo Liang] address comments
444d5e2 [Yanbo Liang] LogisticRegressionModel.predict() optimization
fc7990b [Yanbo Liang] address comments
b0d9c63 [Yanbo Liang] Support Mulinomial LR model predict in Python API
ded847c [Yanbo Liang] Python API parity check for classification (support multiclass classification)
2015-03-31 11:32:14 -07:00
lewuathe 46de6c05e0 [SPARK-6598][MLLIB] Python API for IDFModel
This is the sub-task of SPARK-6254.
Wrapping IDFModel `idf` member function for pyspark.

Author: lewuathe <lewuathe@me.com>

Closes #5264 from Lewuathe/SPARK-6598 and squashes the following commits:

1dc522c [lewuathe] [SPARK-6598] Python API for IDFModel
2015-03-31 11:25:21 -07:00
Xiangrui Meng f75f633b21 [SPARK-6571][MLLIB] use wrapper in MatrixFactorizationModel.load
This fixes `predictAll` after load. jkbradley

Author: Xiangrui Meng <meng@databricks.com>

Closes #5243 from mengxr/SPARK-6571 and squashes the following commits:

82dcaa7 [Xiangrui Meng] use wrapper in MatrixFactorizationModel.load
2015-03-28 15:08:05 -07:00
Yanbo Liang 435337381f [SPARK-6256] [MLlib] MLlib Python API parity check for regression
MLlib Python API parity check for Regression, major disparities need to be added for Python list following:
```scala
LinearRegressionWithSGD
    setValidateData
LassoWithSGD
    setIntercept
    setValidateData
RidgeRegressionWithSGD
    setIntercept
    setValidateData
```
setFeatureScaling is mllib private function which is not needed to expose in pyspark.

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #4997 from yanboliang/spark-6256 and squashes the following commits:

102f498 [Yanbo Liang] fix intercept issue & add doc test
1fb7b4f [Yanbo Liang] change 'intercept' to 'addIntercept'
de5ecbc [Yanbo Liang] MLlib Python API parity check for regression
2015-03-25 13:38:33 -07:00
lewuathe 257cde7c36 [SPARK-6421][MLLIB] _regression_train_wrapper does not test initialWeights correctly
Weight parameters must be initialized correctly even when numpy array is passed as initial weights.

Author: lewuathe <lewuathe@me.com>

Closes #5101 from Lewuathe/SPARK-6421 and squashes the following commits:

7795201 [lewuathe] Fix lint-python errors
21d4fe3 [lewuathe] Fix init logic of weights
2015-03-20 17:18:18 -04:00
Xusen Yin 25636d9867 [Spark 6096][MLlib] Add Naive Bayes load save methods in Python
See [SPARK-6096](https://issues.apache.org/jira/browse/SPARK-6096).

Author: Xusen Yin <yinxusen@gmail.com>

Closes #5090 from yinxusen/SPARK-6096 and squashes the following commits:

bd0fea5 [Xusen Yin] fix style problem, etc.
3fd41f2 [Xusen Yin] use hanging indent in Python style
e83803d [Xusen Yin] fix Python style
d6dbde5 [Xusen Yin] fix python call java error
a054bb3 [Xusen Yin] add save load for NaiveBayes python
2015-03-20 14:53:59 -04:00
Yanbo Liang 48866f7897 [SPARK-6095] [MLLIB] Support model save/load in Python's linear models
For Python's linear models, weights and intercept are stored in Python.
This PR implements Python's linear models sava/load functions which do the same thing as scala.
It can also make model import/export cross languages.

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #5016 from yanboliang/spark-6095 and squashes the following commits:

d9bb824 [Yanbo Liang] fix python style
b3813ca [Yanbo Liang] linear model save/load for Python reuse the Scala implementation
2015-03-20 14:44:21 -04:00
Xiangrui Meng c94d062647 [SPARK-6226][MLLIB] add save/load in PySpark's KMeansModel
Use `_py2java` and `_java2py` to convert Python model to/from Java model. yinxusen

Author: Xiangrui Meng <meng@databricks.com>

Closes #5049 from mengxr/SPARK-6226-mengxr and squashes the following commits:

570ba81 [Xiangrui Meng] fix python style
b10b911 [Xiangrui Meng] add save/load in PySpark's KMeansModel
2015-03-17 12:14:40 -07:00
Joseph K. Bradley 17c309c87e [mllib] [python] Add LassoModel to __all__ in regression.py
Add LassoModel to __all__ in regression.py

LassoModel does not show up in Python docs

This should be merged into branch-1.3 and master.

Author: Joseph K. Bradley <joseph@databricks.com>

Closes #4970 from jkbradley/SPARK-6253 and squashes the following commits:

c2cb533 [Joseph K. Bradley] Add LassoModel to __all__ in regression.py
2015-03-12 16:46:29 -07:00
Xiangrui Meng 0bfacd5c5d [SPARK-6090][MLLIB] add a basic BinaryClassificationMetrics to PySpark/MLlib
A simple wrapper around the Scala implementation. `DataFrame` is used for serialization/deserialization. Methods that return `RDD`s are not supported in this PR.

davies If we recognize Scala's `Product`s in Py4J, we can easily add wrappers for Scala methods that returns `RDD[(Double, Double)]`. Is it easy to register serializer for `Product` in PySpark?

Author: Xiangrui Meng <meng@databricks.com>

Closes #4863 from mengxr/SPARK-6090 and squashes the following commits:

009a3a3 [Xiangrui Meng] provide schema
dcddab5 [Xiangrui Meng] add a basic BinaryClassificationMetrics to PySpark/MLlib
2015-03-05 11:50:09 -08:00
Xiangrui Meng 7e53a79c30 [SPARK-6097][MLLIB] Support tree model save/load in PySpark/MLlib
Similar to `MatrixFactorizaionModel`, we only need wrappers to support save/load for tree models in Python.

jkbradley

Author: Xiangrui Meng <meng@databricks.com>

Closes #4854 from mengxr/SPARK-6097 and squashes the following commits:

4586a4d [Xiangrui Meng] fix more typos
8ebcac2 [Xiangrui Meng] fix python style
91172d8 [Xiangrui Meng] fix typos
201b3b9 [Xiangrui Meng] update user guide
b5158e2 [Xiangrui Meng] support tree model save/load in PySpark/MLlib
2015-03-02 22:27:01 -08:00