tdas koeninger
This updates the Spark Streaming + Kafka Integration Guide doc with a working method to access the offsets of a `KafkaRDD` through Python.
Author: Nick Evans <me@nicolasevans.org>
Closes#9289 from manygrams/update_kafka_direct_python_docs.
This patch modifies Spark's closure cleaner (and a few other places) to use ASM 5, which is necessary in order to support cleaning of closures that were compiled by Java 8.
In order to avoid ASM dependency conflicts, Spark excludes ASM from all of its dependencies and uses a shaded version of ASM 4 that comes from `reflectasm` (see [SPARK-782](https://issues.apache.org/jira/browse/SPARK-782) and #232). This patch updates Spark to use a shaded version of ASM 5.0.4 that was published by the Apache XBean project; the POM used to create the shaded artifact can be found at https://github.com/apache/geronimo-xbean/blob/xbean-4.4/xbean-asm5-shaded/pom.xml.
http://movingfulcrum.tumblr.com/post/80826553604/asm-framework-50-the-missing-migration-guide was a useful resource while upgrading the code to use the new ASM5 opcodes.
I also added a new regression tests in the `java8-tests` subproject; the existing tests were insufficient to catch this bug, which only affected Scala 2.11 user code which was compiled targeting Java 8.
Author: Josh Rosen <joshrosen@databricks.com>
Closes#9512 from JoshRosen/SPARK-6152.
This fix is to add one line to explain the current behavior of Spark SQL when writing Parquet files. All columns are forced to be nullable for compatibility reasons.
Author: gatorsmile <gatorsmile@gmail.com>
Closes#9314 from gatorsmile/lossNull.
I have tested it on my local, it is working fine, please review
Author: sachin aggarwal <different.sachin@gmail.com>
Closes#9539 from agsachin/SPARK-11552-real.
1) kafkaStreams is a list. The list should be unpacked when passing it into the streaming context union method, which accepts a variable number of streams.
2) print() should be pprint() for pyspark.
This contribution is my original work, and I license the work to the project under the project's open source license.
Author: chriskang90 <jckang@uchicago.edu>
Closes#9545 from c-kang/streaming_python_typo.
It doesn't show up as a hyperlink currently. It will show up as a hyperlink after this change.
Author: Rohit Agarwal <mindprince@gmail.com>
Closes#9544 from mindprince/patch-2.
Doc change to align with HiveConf default in terms of where to create `warehouse` directory.
Author: xin Wu <xinwu@us.ibm.com>
Closes#9365 from xwu0226/spark-10046-commit.
This snippet seems to be mistakenly introduced at two places in #5348.
Author: Rohit Agarwal <mindprince@gmail.com>
Closes#9540 from mindprince/patch-1.
We should use ```coefficients``` rather than ```weights``` in user guide that freshman can get the right conventional name at the outset. mengxr vectorijk
Author: Yanbo Liang <ybliang8@gmail.com>
Closes#9493 from yanboliang/docs-coefficients.
Spark should build against Scala 2.10.5, since that includes a fix for Scaladoc that will fix doc snapshot publishing: https://issues.scala-lang.org/browse/SI-8479
Author: Josh Rosen <joshrosen@databricks.com>
Closes#9450 from JoshRosen/upgrade-to-scala-2.10.5.
The trim_codeblock(lines) function in include_example.rb removes some blank lines in the code.
Author: Xusen Yin <yinxusen@gmail.com>
Closes#9400 from yinxusen/SPARK-11443.
I have made the required changes in mllib-naive-bayes.md/mllib-isotonic-regression.md and also verified them.
Kindle Review it.
Author: Rishabh Bhardwaj <rbnext29@gmail.com>
Closes#9353 from rishabhbhardwaj/SPARK-11383.
Remove Hadoop third party distro page, and move Hadoop cluster config info to configuration page
CC pwendell
Author: Sean Owen <sowen@cloudera.com>
Closes#9298 from srowen/SPARK-11305.
Mapping spark.driver.memory from sparkEnvir to spark-submit commandline arguments.
shivaram suggested that we possibly add other spark.driver.* properties - do we want to add all of those? I thought those could be set in SparkConf?
sun-rui
Author: felixcheung <felixcheung_m@hotmail.com>
Closes#9290 from felixcheung/rdrivermem.
Recall by threshold snippet was using "precisionByThreshold"
Author: Mageswaran.D <mageswaran1989@gmail.com>
Closes#9333 from Mageswaran1989/Typo_in_mllib-evaluation-metrics.md.
mengxr https://issues.apache.org/jira/browse/SPARK-11289
I make some changes in ML feature extractors. I.e. TF-IDF, Word2Vec, and CountVectorizer. I add new example code in spark/examples, hope it is the right place to add those examples.
Author: Xusen Yin <yinxusen@gmail.com>
Closes#9266 from yinxusen/SPARK-11289.
The SQL programming guide's link to the DataFrame functions reference points to the wrong location; this patch fixes that.
Author: Josh Rosen <joshrosen@databricks.com>
Closes#9269 from JoshRosen/SPARK-11299.
A POC code for making example code in user guide testable.
mengxr We still need to talk about the labels in code.
Author: Xusen Yin <yinxusen@gmail.com>
Closes#9109 from yinxusen/SPARK-10382.
There's a lot of duplication between SortShuffleManager and UnsafeShuffleManager. Given that these now provide the same set of functionality, now that UnsafeShuffleManager supports large records, I think that we should replace SortShuffleManager's serialized shuffle implementation with UnsafeShuffleManager's and should merge the two managers together.
Author: Josh Rosen <joshrosen@databricks.com>
Closes#8829 from JoshRosen/consolidate-sort-shuffle-implementations.
Currently log4j.properties file is not uploaded to executor's which is leading them to use the default values. This fix will make sure that file is always uploaded to distributed cache so that executor will use the latest settings.
If user specifies log configurations through --files then executors will be picking configs from --files instead of $SPARK_CONF_DIR/log4j.properties
Author: vundela <vsr@cloudera.com>
Author: Srinivasa Reddy Vundela <vsr@cloudera.com>
Closes#9118 from vundela/master.
This patch fixes a small typo in the GraphX programming guide
Author: Lukasz Piepiora <lpiepiora@gmail.com>
Closes#9160 from lpiepiora/11174-fix-typo-in-graphx-programming-guide.
Add documentation for configuration:
- spark.sql.ui.retainedExecutions
- spark.streaming.ui.retainedBatches
Author: Nick Pritchard <nicholas.pritchard@falkonry.com>
Closes#9052 from pnpritchard/SPARK-11039.
This patch unifies the memory management of the storage and execution regions such that either side can borrow memory from each other. When memory pressure arises, storage will be evicted in favor of execution. To avoid regressions in cases where storage is crucial, we dynamically allocate a fraction of space for storage that execution cannot evict. Several configurations are introduced:
- **spark.memory.fraction (default 0.75)**: fraction of the heap space used for execution and storage. The lower this is, the more frequently spills and cached data eviction occur. The purpose of this config is to set aside memory for internal metadata, user data structures, and imprecise size estimation in the case of sparse, unusually large records.
- **spark.memory.storageFraction (default 0.5)**: size of the storage region within the space set aside by `spark.memory.fraction`. Cached data may only be evicted if total storage exceeds this region.
- **spark.memory.useLegacyMode (default false)**: whether to use the memory management that existed in Spark 1.5 and before. This is mainly for backward compatibility.
For a detailed description of the design, see [SPARK-10000](https://issues.apache.org/jira/browse/SPARK-10000). This patch builds on top of the `MemoryManager` interface introduced in #9000.
Author: Andrew Or <andrew@databricks.com>
Closes#9084 from andrewor14/unified-memory-manager.
Add application attempt window for Spark on Yarn to ignore old out of window failures, this is useful for long running applications to recover from failures.
Author: jerryshao <sshao@hortonworks.com>
Closes#8857 from jerryshao/SPARK-10739 and squashes the following commits:
36eabdc [jerryshao] change the doc
7f9b77d [jerryshao] Style change
1c9afd0 [jerryshao] Address the comments
caca695 [jerryshao] Add application attempt window for Spark on Yarn
This commit improves the documentation around building Spark to
(1) recommend using SBT interactive mode to avoid the overhead of
launching SBT and (2) refer to the wiki page that documents using
SPARK_PREPEND_CLASSES to avoid creating the assembly jar for each
compile.
cc srowen
Author: Kay Ousterhout <kayousterhout@gmail.com>
Closes#9068 from kayousterhout/SPARK-11056.
1.4 docs noted that the units were MB - i have assumed this is still the case
Author: admackin <admackin@users.noreply.github.com>
Closes#9025 from admackin/master.
In the Markdown docs for the spark.mllib Programming Guide, we have code examples with codetabs for each language. We should link to each language's API docs within the corresponding codetab, but we are inconsistent about this. For an example of what we want to do, see the "ChiSqSelector" section in 64743870f2/docs/mllib-feature-extraction.md
This JIRA is just for spark.mllib, not spark.ml.
Please let me know if more work is needed, thanks a lot.
Author: Xin Ren <iamshrek@126.com>
Closes#8977 from keypointt/SPARK-10669.
Recommend `--master yarn --deploy-mode {cluster,client}` consistently in docs.
Follow-on to https://github.com/apache/spark/pull/8385
CC nssalian
Author: Sean Owen <sowen@cloudera.com>
Closes#8968 from srowen/SPARK-9570.
jira: https://issues.apache.org/jira/browse/SPARK-10670
In the Markdown docs for the spark.ml Programming Guide, we have code examples with codetabs for each language. We should link to each language's API docs within the corresponding codetab, but we are inconsistent about this. For an example of what we want to do, see the "Word2Vec" section in 64743870f2/docs/ml-features.md
This JIRA is just for spark.ml, not spark.mllib
Author: Yuhao Yang <hhbyyh@gmail.com>
Closes#8901 from hhbyyh/docAPI.
The Scala example under the "Example: Pipeline" heading in this
document initializes the "test" variable to a DataFrame. Because test
is already a DF, there is not need to call test.toDF as the example
does in a subsequent line: model.transform(test.toDF). So, I removed
the extraneous toDF invocation.
Author: Matt Hagen <anonz3000@gmail.com>
Closes#8875 from hagenhaus/SPARK-10663.
It does not make much sense to set `spark.shuffle.spill` or `spark.sql.planner.externalSort` to false: I believe that these configurations were initially added as "escape hatches" to guard against bugs in the external operators, but these operators are now mature and well-tested. In addition, these configurations are not handled in a consistent way anymore: SQL's Tungsten codepath ignores these configurations and will continue to use spilling operators. Similarly, Spark Core's `tungsten-sort` shuffle manager does not respect `spark.shuffle.spill=false`.
This pull request removes these configurations, adds warnings at the appropriate places, and deletes a large amount of code which was only used in code paths that did not support spilling.
Author: Josh Rosen <joshrosen@databricks.com>
Closes#8831 from JoshRosen/remove-ability-to-disable-spilling.
In Spark 1.5.0, Spark SQL is compatible with Hive 0.12.0 through 1.2.1 but the documentation is wrong.
/CC yhuai
Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp>
Closes#8776 from sarutak/SPARK-10584-2.
The [published docs for 1.5.0](http://spark.apache.org/docs/1.5.0/api/java/org/apache/spark/streaming/) have a bunch of test classes in them. The only way I can reproduce this is to `test:compile` before running `unidoc`. To prevent this from happening again, I've added a clean before doc generation.
Author: Michael Armbrust <michael@databricks.com>
Closes#8787 from marmbrus/testsInDocs.
In the Configuration section, the **spark.yarn.driver.memoryOverhead** and **spark.yarn.am.memoryOverhead**‘s default value should be "driverMemory * 0.10, with minimum of 384" and "AM memory * 0.10, with minimum of 384" respectively. Because from Spark 1.4.0, the **MEMORY_OVERHEAD_FACTOR** is set to 0.1.0, not 0.07.
Author: yangping.wu <wyphao.2007@163.com>
Closes#8797 from 397090770/SparkOnYarnDocError.
Various ML guide cleanups.
* ml-guide.md: Make it easier to access the algorithm-specific guides.
* LDA user guide: EM often begins with useless topics, but running longer generally improves them dramatically. E.g., 10 iterations on a Wikipedia dataset produces useless topics, but 50 iterations produces very meaningful topics.
* mllib-feature-extraction.html#elementwiseproduct: “w” parameter should be “scalingVec”
* Clean up Binarizer user guide a little.
* Document in Pipeline that users should not put an instance into the Pipeline in more than 1 place.
* spark.ml Word2Vec user guide: clean up grammar/writing
* Chi Sq Feature Selector docs: Improve text in doc.
CC: mengxr feynmanliang
Author: Joseph K. Bradley <joseph@databricks.com>
Closes#8752 from jkbradley/mlguide-fixes-1.5.
* a follow-up to 16b6d18613 as `--num-executors` flag is not suppported.
* links + formatting
Author: Jacek Laskowski <jacek.laskowski@deepsense.io>
Closes#8762 from jaceklaskowski/docs-spark-on-yarn.
Links work now properly + consistent use of *Spark standalone cluster* (Spark uppercase + lowercase the rest -- seems agreed in the other places in the docs).
Author: Jacek Laskowski <jacek.laskowski@deepsense.io>
Closes#8759 from jaceklaskowski/docs-submitting-apps.
The default value of hive metastore version is 1.2.1 but the documentation says the value of `spark.sql.hive.metastore.version` is 0.13.1.
Also, we cannot get the default value by `sqlContext.getConf("spark.sql.hive.metastore.version")`.
Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp>
Closes#8739 from sarutak/SPARK-10584.
I fixed to use LIBSVM data source in the example code in spark.ml instead of MLUtils
Author: y-shimizu <y.shimizu0429@gmail.com>
Closes#8697 from y-shimizu/SPARK-10518.
spark.scheduler.minRegisteredResourcesRatio configuration parameter works for YARN mode but not for Mesos Coarse grained mode.
If the parameter specified default value of 0 will be set for spark.scheduler.minRegisteredResourcesRatio in base class and this method will always return true.
There are no existing test for YARN mode too. Hence not added test for the same.
Author: Akash Mishra <akash.mishra20@gmail.com>
Closes#8672 from SleepyThread/master.
Small typo in the example for `LabelledPoint` in the MLLib docs.
Author: Sean Paradiso <seanparadiso@gmail.com>
Closes#8680 from sparadiso/docs_mllib_smalltypo.
Author: Tathagata Das <tathagata.das1565@gmail.com>
Closes#8656 from tdas/SPARK-10492 and squashes the following commits:
986cdd6 [Tathagata Das] Added information on backpressure
We introduced the Netty network module for shuffle in Spark 1.2, and has turned it on by default for 3 releases. The old ConnectionManager is difficult to maintain. If we merge the patch now, by the time it is released, it would be 1 yr for which ConnectionManager is off by default. It's time to remove it.
Author: Reynold Xin <rxin@databricks.com>
Closes#8161 from rxin/SPARK-9767.
- Fixed information around Python API tags in streaming programming guides
- Added missing stuff in python docs
Author: Tathagata Das <tathagata.das1565@gmail.com>
Closes#8595 from tdas/SPARK-10440.
Support running pyspark with cluster mode on Mesos!
This doesn't upload any scripts, so if running in a remote Mesos requires the user to specify the script from a available URI.
Author: Timothy Chen <tnachen@gmail.com>
Closes#8349 from tnachen/mesos_python.
SPARK-4223.
Currently we support setting view and modify acls but you have to specify a list of users. It would be nice to support * meaning all users have access.
Manual tests to verify that: "*" works for any user in:
a. Spark ui: view and kill stage. Done.
b. Spark history server. Done.
c. Yarn application killing. Done.
Author: zhuol <zhuol@yahoo-inc.com>
Closes#8398 from zhuoliu/4223.
Migrate Apache download closer.cgi refs to new closer.lua
This is the bit of the change that affects the project docs; I'm implementing the changes to the Apache site separately.
Author: Sean Owen <sowen@cloudera.com>
Closes#8557 from srowen/SPARK-10398.
* The example code was added in 1.2, before `createDataFrame`. This PR switches to `createDataFrame`. Java code still uses JavaBean.
* assume `sqlContext` is available
* fix some minor issues from previous code review
jkbradley srowen feynmanliang
Author: Xiangrui Meng <meng@databricks.com>
Closes#8518 from mengxr/SPARK-10331.
* replace `ML Dataset` by `DataFrame` to unify the abstraction
* ML algorithms -> pipeline components to describe the main concept
* remove Scala API doc links from the main guide
* `Section Title` -> `Section tile` to be consistent with other section titles in MLlib guide
* modified lines break at 100 chars or periods
jkbradley feynmanliang
Author: Xiangrui Meng <meng@databricks.com>
Closes#8517 from mengxr/SPARK-10348.
This PR updates the MLlib user guide and adds migration guide for 1.4->1.5.
* merge migration guide for `spark.mllib` and `spark.ml` packages
* remove dependency section from `spark.ml` guide
* move the paragraph about `spark.mllib` and `spark.ml` to the top and recommend `spark.ml`
* move Sam's talk to footnote to make the section focus on dependencies
Minor changes to code examples and other wording will be in a separate PR.
jkbradley srowen feynmanliang
Author: Xiangrui Meng <meng@databricks.com>
Closes#8498 from mengxr/SPARK-9671.
* Adds user guide for `LinearRegressionSummary`
* Fixes unresolved issues in #8197
CC jkbradley mengxr
Author: Feynman Liang <fliang@databricks.com>
Closes#8491 from feynmanliang/SPARK-9905.
I added a small note about the different types of evaluator and the metrics used.
Author: MechCoder <manojkumarsivaraj334@gmail.com>
Closes#8304 from MechCoder/multiclass_evaluator.
https://issues.apache.org/jira/browse/SPARK-10287
After porting json to HadoopFsRelation, it seems hard to keep the behavior of picking up new files automatically for JSON. This PR removes this behavior, so JSON is consistent with others (ORC and Parquet).
Author: Yin Huai <yhuai@databricks.com>
Closes#8469 from yhuai/jsonRefresh.
* Adds user guide for ml.feature.StopWordsRemovers, ran code examples on my machine
* Cleans up scaladocs for public methods
* Adds test for Java compatibility
* Follow up Python user guide code example is tracked by SPARK-10249
Author: Feynman Liang <fliang@databricks.com>
Closes#8436 from feynmanliang/SPARK-10230.
jira: https://issues.apache.org/jira/browse/SPARK-9901
The jira covers only the document update. I can further provide example code for QR (like the ones for SVD and PCA) in a separate PR.
Author: Yuhao Yang <hhbyyh@gmail.com>
Closes#8462 from hhbyyh/qrDoc.
https://issues.apache.org/jira/browse/SPARK-10315
this parameter is not used any longer and there is some mistake in the current document , should be 'akka.remote.watch-failure-detector.threshold'
Author: CodingCat <zhunansjtu@gmail.com>
Closes#8483 from CodingCat/SPARK_10315.
* Adds two new sections to LDA's user guide; one for each optimizer/model
* Documents new features added to LDA (e.g. topXXXperXXX, asymmetric priors, hyperpam optimization)
* Cleans up a TODO and sets a default parameter in LDA code
jkbradley hhbyyh
Author: Feynman Liang <fliang@databricks.com>
Closes#8254 from feynmanliang/SPARK-9888.
jira: https://issues.apache.org/jira/browse/SPARK-8531
Update ML user guide for MinMaxScaler
Author: Yuhao Yang <hhbyyh@gmail.com>
Author: unknown <yuhaoyan@yuhaoyan-MOBL1.ccr.corp.intel.com>
Closes#7211 from hhbyyh/minmaxdoc.
