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6306 commits

Author SHA1 Message Date
gatorsmile 659acf18da Revert "[SPARK-22308] Support alternative unit testing styles in external applications"
This reverts commit 592cfeab9c.
2017-10-29 10:37:25 -07:00
Liang-Chi Hsieh 4f8dc6b01e [SPARK-22328][CORE] ClosureCleaner should not miss referenced superclass fields
## What changes were proposed in this pull request?

When the given closure uses some fields defined in super class, `ClosureCleaner` can't figure them and don't set it properly. Those fields will be in null values.

## How was this patch tested?

Added test.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #19556 from viirya/SPARK-22328.
2017-10-26 21:41:45 +01:00
Marcelo Vanzin 0e9a750a8d [SPARK-20643][CORE] Add listener implementation to collect app state.
The initial listener code is based on the existing JobProgressListener (and others),
and tries to mimic their behavior as much as possible. The change also includes
some minor code movement so that some types and methods from the initial history
server code code can be reused.

The code introduces a few mutable versions of public API types, used internally,
to make it easier to update information without ugly copy methods, and also to
make certain updates cheaper.

Note the code here is not 100% correct. This is meant as a building ground for
the UI integration in the next milestones. As different parts of the UI are
ported, fixes will be made to the different parts of this code to account
for the needed behavior.

I also added annotations to API types so that Jackson is able to correctly
deserialize options, sequences and maps that store primitive types.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #19383 from vanzin/SPARK-20643.
2017-10-26 11:05:16 -05:00
Marcelo Vanzin 3073344a25 [SPARK-21840][CORE] Add trait that allows conf to be directly set in application.
Currently SparkSubmit uses system properties to propagate configuration to
applications. This makes it hard to implement features such as SPARK-11035,
which would allow multiple applications to be started in the same JVM. The
current code would cause the config data from multiple apps to get mixed
up.

This change introduces a new trait, currently internal to Spark, that allows
the app configuration to be passed directly to the application, without
having to use system properties. The current "call main() method" behavior
is maintained as an implementation of this new trait. This will be useful
to allow multiple cluster mode apps to be submitted from the same JVM.

As part of this, SparkSubmit was modified to collect all configuration
directly into a SparkConf instance. Most of the changes are to tests so
they use SparkConf instead of an opaque map.

Tested with existing and added unit tests.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #19519 from vanzin/SPARK-21840.
2017-10-26 15:50:27 +08:00
Nathan Kronenfeld 592cfeab9c [SPARK-22308] Support alternative unit testing styles in external applications
## What changes were proposed in this pull request?
Support unit tests of external code (i.e., applications that use spark) using scalatest that don't want to use FunSuite.  SharedSparkContext already supports this, but SharedSQLContext does not.

I've introduced SharedSparkSession as a parent to SharedSQLContext, written in a way that it does support all scalatest styles.

## How was this patch tested?
There are three new unit test suites added that just test using FunSpec, FlatSpec, and WordSpec.

Author: Nathan Kronenfeld <nicole.oresme@gmail.com>

Closes #19529 from nkronenfeld/alternative-style-tests-2.
2017-10-26 00:29:49 -07:00
Sergei Lebedev b377ef133c [SPARK-22227][CORE] DiskBlockManager.getAllBlocks now tolerates temp files
## What changes were proposed in this pull request?

Prior to this commit getAllBlocks implicitly assumed that the directories
managed by the DiskBlockManager contain only the files corresponding to
valid block IDs. In reality, this assumption was violated during shuffle,
which produces temporary files in the same directory as the resulting
blocks. As a result, calls to getAllBlocks during shuffle were unreliable.

The fix could be made more efficient, but this is probably good enough.

## How was this patch tested?

`DiskBlockManagerSuite`

Author: Sergei Lebedev <s.lebedev@criteo.com>

Closes #19458 from superbobry/block-id-option.
2017-10-25 22:15:44 +01:00
Sean Owen 6c6950839d [SPARK-22322][CORE] Update FutureAction for compatibility with Scala 2.12 Future
## What changes were proposed in this pull request?

Scala 2.12's `Future` defines two new methods to implement, `transform` and `transformWith`. These can be implemented naturally in Spark's `FutureAction` extension and subclasses, but, only in terms of the new methods that don't exist in Scala 2.11. To support both at the same time, reflection is used to implement these.

## How was this patch tested?

Existing tests.

Author: Sean Owen <sowen@cloudera.com>

Closes #19561 from srowen/SPARK-22322.
2017-10-25 12:51:20 +01:00
Steven Rand 57accf6e39 [SPARK-22319][CORE] call loginUserFromKeytab before accessing hdfs
In `SparkSubmit`, call `loginUserFromKeytab` before attempting to make RPC calls to the NameNode.

I manually tested this patch by:

1. Confirming that my Spark application failed to launch with the error reported in https://issues.apache.org/jira/browse/SPARK-22319.
2. Applying this patch and confirming that the app no longer fails to launch, even when I have not manually run `kinit` on the host.

Presumably we also want integration tests for secure clusters so that we catch this sort of thing. I'm happy to take a shot at this if it's feasible and someone can point me in the right direction.

Author: Steven Rand <srand@palantir.com>

Closes #19540 from sjrand/SPARK-22319.

Change-Id: Ic306bfe7181107fbcf92f61d75856afcb5b6f761
2017-10-23 09:43:45 +08:00
Takuya UESHIN b8624b06e5 [SPARK-20396][SQL][PYSPARK][FOLLOW-UP] groupby().apply() with pandas udf
## What changes were proposed in this pull request?

This is a follow-up of #18732.
This pr modifies `GroupedData.apply()` method to convert pandas udf to grouped udf implicitly.

## How was this patch tested?

Exisiting tests.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #19517 from ueshin/issues/SPARK-20396/fup2.
2017-10-20 12:44:30 -07:00
Andrew Ash 7fae7995ba [SPARK-22268][BUILD] Fix lint-java
## What changes were proposed in this pull request?

Fix java style issues

## How was this patch tested?

Run `./dev/lint-java` locally since it's not run on Jenkins

Author: Andrew Ash <andrew@andrewash.com>

Closes #19486 from ash211/aash/fix-lint-java.
2017-10-20 09:40:00 +09:00
krishna-pandey 5a07aca4d4 [SPARK-22188][CORE] Adding security headers for preventing XSS, MitM and MIME sniffing
## What changes were proposed in this pull request?

The HTTP Strict-Transport-Security response header (often abbreviated as HSTS) is a security feature that lets a web site tell browsers that it should only be communicated with using HTTPS, instead of using HTTP.

Note: The Strict-Transport-Security header is ignored by the browser when your site is accessed using HTTP; this is because an attacker may intercept HTTP connections and inject the header or remove it. When your site is accessed over HTTPS with no certificate errors, the browser knows your site is HTTPS capable and will honor the Strict-Transport-Security header.

The HTTP X-XSS-Protection response header is a feature of Internet Explorer, Chrome and Safari that stops pages from loading when they detect reflected cross-site scripting (XSS) attacks.

The HTTP X-Content-Type-Options response header is used to protect against MIME sniffing vulnerabilities.

## How was this patch tested?
Checked on my system locally.

<img width="750" alt="screen shot 2017-10-03 at 6 49 20 pm" src="https://user-images.githubusercontent.com/6433184/31127234-eadf7c0c-a86b-11e7-8e5d-f6ea3f97b210.png">

Author: krishna-pandey <krish.pandey21@gmail.com>
Author: Krishna Pandey <krish.pandey21@gmail.com>

Closes #19419 from krishna-pandey/SPARK-22188.
2017-10-19 08:33:14 +01:00
Marcelo Vanzin dc2714da50 [SPARK-22290][CORE] Avoid creating Hive delegation tokens when not necessary.
Hive delegation tokens are only needed when the Spark driver has no access
to the kerberos TGT. That happens only in two situations:

- when using a proxy user
- when using cluster mode without a keytab

This change modifies the Hive provider so that it only generates delegation
tokens in those situations, and tweaks the YARN AM so that it makes the proper
user visible to the Hive code when running with keytabs, so that the TGT
can be used instead of a delegation token.

The effect of this change is that now it's possible to initialize multiple,
non-concurrent SparkContext instances in the same JVM. Before, the second
invocation would fail to fetch a new Hive delegation token, which then could
make the second (or third or...) application fail once the token expired.
With this change, the TGT will be used to authenticate to the HMS instead.

This change also avoids polluting the current logged in user's credentials
when launching applications. The credentials are copied only when running
applications as a proxy user. This makes it possible to implement SPARK-11035
later, where multiple threads might be launching applications, and each app
should have its own set of credentials.

Tested by verifying HDFS and Hive access in following scenarios:
- client and cluster mode
- client and cluster mode with proxy user
- client and cluster mode with principal / keytab
- long-running cluster app with principal / keytab
- pyspark app that creates (and stops) multiple SparkContext instances
  through its lifetime

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #19509 from vanzin/SPARK-22290.
2017-10-19 14:56:48 +08:00
Michael Mior 1437e344ec [SPARK-22050][CORE] Allow BlockUpdated events to be optionally logged to the event log
## What changes were proposed in this pull request?

I see that block updates are not logged to the event log.
This makes sense as a default for performance reasons.
However, I find it helpful when trying to get a better understanding of caching for a job to be able to log these updates.
This PR adds a configuration setting `spark.eventLog.blockUpdates` (defaulting to false) which allows block updates to be recorded in the log.
This contribution is original work which is licensed to the Apache Spark project.

## How was this patch tested?

Current and additional unit tests.

Author: Michael Mior <mmior@uwaterloo.ca>

Closes #19263 from michaelmior/log-block-updates.
2017-10-17 14:30:52 -07:00
jerryshao e1960c3d6f [SPARK-22062][CORE] Spill large block to disk in BlockManager's remote fetch to avoid OOM
## What changes were proposed in this pull request?

In the current BlockManager's `getRemoteBytes`, it will call `BlockTransferService#fetchBlockSync` to get remote block. In the `fetchBlockSync`, Spark will allocate a temporary `ByteBuffer` to store the whole fetched block. This will potentially lead to OOM if block size is too big or several blocks are fetched simultaneously in this executor.

So here leveraging the idea of shuffle fetch, to spill the large block to local disk before consumed by upstream code. The behavior is controlled by newly added configuration, if block size is smaller than the threshold, then this block will be persisted in memory; otherwise it will first spill to disk, and then read from disk file.

To achieve this feature, what I did is:

1. Rename `TempShuffleFileManager` to `TempFileManager`, since now it is not only used by shuffle.
2. Add a new `TempFileManager` to manage the files of fetched remote blocks, the files are tracked by weak reference, will be deleted when no use at all.

## How was this patch tested?

This was tested by adding UT, also manual verification in local test to perform GC to clean the files.

Author: jerryshao <sshao@hortonworks.com>

Closes #19476 from jerryshao/SPARK-22062.
2017-10-17 22:54:38 +08:00
Xingbo Jiang 0fa10666cf [SPARK-22233][CORE][FOLLOW-UP] Allow user to filter out empty split in HadoopRDD
## What changes were proposed in this pull request?

Update the config `spark.files.ignoreEmptySplits`, rename it and make it internal.

This is followup of #19464

## How was this patch tested?

Exsiting tests.

Author: Xingbo Jiang <xingbo.jiang@databricks.com>

Closes #19504 from jiangxb1987/partitionsplit.
2017-10-16 22:15:50 +08:00
Mridul Muralidharan 13c1559587 [SPARK-21549][CORE] Respect OutputFormats with no/invalid output directory provided
## What changes were proposed in this pull request?

PR #19294 added support for null's - but spark 2.1 handled other error cases where path argument can be invalid.
Namely:

* empty string
* URI parse exception while creating Path

This is resubmission of PR #19487, which I messed up while updating my repo.

## How was this patch tested?

Enhanced test to cover new support added.

Author: Mridul Muralidharan <mridul@gmail.com>

Closes #19497 from mridulm/master.
2017-10-15 18:40:53 -07:00
liulijia 014dc84712 [SPARK-22233][CORE] Allow user to filter out empty split in HadoopRDD
## What changes were proposed in this pull request?
Add a flag spark.files.ignoreEmptySplits. When true, methods like that use HadoopRDD and NewHadoopRDD such as SparkContext.textFiles will not create a partition for input splits that are empty.

Author: liulijia <liulijia@meituan.com>

Closes #19464 from liutang123/SPARK-22233.
2017-10-14 17:37:33 +09:00
Xianyang Liu b5c1ef7a8e [SPARK-22097][CORE] Request an accurate memory after we unrolled the block
## What changes were proposed in this pull request?

We only need request `bbos.size - unrollMemoryUsedByThisBlock` after unrolled the block.

## How was this patch tested?

Existing UT.

Author: Xianyang Liu <xianyang.liu@intel.com>

Closes #19316 from ConeyLiu/putIteratorAsBytes.
2017-10-12 20:26:51 +08:00
Marcelo Vanzin bd4eb9ce57 [SPARK-19558][SQL] Add config key to register QueryExecutionListeners automatically.
This change adds a new SQL config key that is equivalent to SparkContext's
"spark.extraListeners", allowing users to register QueryExecutionListener
instances through the Spark configuration system instead of having to
explicitly do it in code.

The code used by SparkContext to implement the feature was refactored into
a helper method in the Utils class, and SQL's ExecutionListenerManager was
modified to use it to initialize listener declared in the configuration.

Unit tests were added to verify all the new functionality.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #19309 from vanzin/SPARK-19558.
2017-10-10 15:50:37 -07:00
Eyal Farago 2028e5a82b [SPARK-21907][CORE] oom during spill
## What changes were proposed in this pull request?
1. a test reproducing [SPARK-21907](https://issues.apache.org/jira/browse/SPARK-21907)
2. a fix for the root cause of the issue.

`org.apache.spark.util.collection.unsafe.sort.UnsafeExternalSorter.spill` calls `org.apache.spark.util.collection.unsafe.sort.UnsafeInMemorySorter.reset` which may trigger another spill,
when this happens the `array` member is already de-allocated but still referenced by the code, this causes the nested spill to fail with an NPE in `org.apache.spark.memory.TaskMemoryManager.getPage`.
This patch introduces a reproduction in a test case and a fix, the fix simply sets the in-mem sorter's array member to an empty array before actually performing the allocation. This prevents the spilling code from 'touching' the de-allocated array.

## How was this patch tested?
introduced a new test case: `org.apache.spark.util.collection.unsafe.sort.UnsafeExternalSorterSuite#testOOMDuringSpill`.

Author: Eyal Farago <eyal@nrgene.com>

Closes #19181 from eyalfa/SPARK-21907__oom_during_spill.
2017-10-10 22:49:47 +02:00
Prashant Sharma 23af2d79ad [SPARK-20025][CORE] Ignore SPARK_LOCAL* env, while deploying via cluster mode.
## What changes were proposed in this pull request?

In a bare metal system with No DNS setup, spark may be configured with SPARK_LOCAL* for IP and host properties.
During a driver failover, in cluster deployment mode. SPARK_LOCAL* should be ignored while restarting on another node and should be picked up from target system's local environment.

## How was this patch tested?
Distributed deployment against a spark standalone cluster of  6 Workers. Tested by killing JVM's running driver and verified the restarted JVMs have right configurations on them.

Author: Prashant Sharma <prashsh1@in.ibm.com>
Author: Prashant Sharma <prashant@apache.org>

Closes #17357 from ScrapCodes/driver-failover-fix.
2017-10-10 20:48:42 +08:00
liuxian b8a08f25cc [SPARK-21506][DOC] The description of "spark.executor.cores" may be not correct
## What changes were proposed in this pull request?

The number of cores assigned to each executor is configurable. When this is not explicitly set,  multiple executors from the same application may be launched on the same worker too.

## How was this patch tested?
N/A

Author: liuxian <liu.xian3@zte.com.cn>

Closes #18711 from 10110346/executorcores.
2017-10-10 20:44:33 +08:00
Feng Liu bebd2e1ce1 [SPARK-22222][CORE] Fix the ARRAY_MAX in BufferHolder and add a test
## What changes were proposed in this pull request?

We should not break the assumption that the length of the allocated byte array is word rounded:
https://github.com/apache/spark/blob/master/sql/catalyst/src/main/java/org/apache/spark/sql/catalyst/expressions/UnsafeRow.java#L170
So we want to use `Integer.MAX_VALUE - 15` instead of `Integer.MAX_VALUE - 8` as the upper bound of an allocated byte array.

cc: srowen gatorsmile
## How was this patch tested?

Since the Spark unit test JVM has less than 1GB heap, here we run the test code as a submit job, so it can run on a JVM has 4GB memory.

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: Feng Liu <fengliu@databricks.com>

Closes #19460 from liufengdb/fix_array_max.
2017-10-09 21:34:37 -07:00
Dongjoon Hyun f31e11404d [SPARK-21568][CORE] ConsoleProgressBar should only be enabled in shells
## What changes were proposed in this pull request?

This PR disables console progress bar feature in non-shell environment by overriding the configuration.

## How was this patch tested?

Manual. Run the following examples with and without `spark.ui.showConsoleProgress` in order to see progress bar on master branch and this PR.

**Scala Shell**
```scala
spark.range(1000000000).map(_ + 1).count
```

**PySpark**
```python
spark.range(10000000).rdd.map(lambda x: len(x)).count()
```

**Spark Submit**
```python
from pyspark.sql import SparkSession

if __name__ == "__main__":
    spark = SparkSession.builder.getOrCreate()
    spark.range(2000000).rdd.map(lambda row: len(row)).count()
    spark.stop()
```

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #19061 from dongjoon-hyun/SPARK-21568.
2017-10-09 12:53:10 -07:00
Yuanjian Li fe7b219ae3 [SPARK-22074][CORE] Task killed by other attempt task should not be resubmitted
## What changes were proposed in this pull request?

As the detail scenario described in [SPARK-22074](https://issues.apache.org/jira/browse/SPARK-22074), unnecessary resubmitted may cause stage hanging in currently release versions. This patch add a new var in TaskInfo to mark this task killed by other attempt or not.

## How was this patch tested?

Add a new UT `[SPARK-22074] Task killed by other attempt task should not be resubmitted` in TaskSetManagerSuite, this UT recreate the scenario in JIRA description, it failed without the changes in this PR and passed conversely.

Author: Yuanjian Li <xyliyuanjian@gmail.com>

Closes #19287 from xuanyuanking/SPARK-22074.
2017-10-09 14:16:25 +08:00
Sergei Lebedev c998a2ae0e [SPARK-22147][CORE] Removed redundant allocations from BlockId
## What changes were proposed in this pull request?

Prior to this commit BlockId.hashCode and BlockId.equals were defined
in terms of BlockId.name. This allowed the subclasses to be concise and
enforced BlockId.name as a single unique identifier for a block. All
subclasses override BlockId.name with an expression involving an
allocation of StringBuilder and ultimatelly String. This is suboptimal
since it induced unnecessary GC pressure on the dirver, see
BlockManagerMasterEndpoint.

The commit removes the definition of hashCode and equals from the base
class. No other change is necessary since all subclasses are in fact
case classes and therefore have auto-generated hashCode and equals. No
change of behaviour is expected.

Sidenote: you might be wondering, why did the subclasses use the base
implementation and the auto-generated one? Apparently, this behaviour
is documented in the spec. See this SO answer for details
https://stackoverflow.com/a/44990210/262432.

## How was this patch tested?

BlockIdSuite

Author: Sergei Lebedev <s.lebedev@criteo.com>

Closes #19369 from superbobry/blockid-equals-hashcode.
2017-10-08 12:58:39 +01:00
Sergey Zhemzhitsky 2030f19511 [SPARK-21549][CORE] Respect OutputFormats with no output directory provided
## What changes were proposed in this pull request?

Fix for https://issues.apache.org/jira/browse/SPARK-21549 JIRA issue.

Since version 2.2 Spark does not respect OutputFormat with no output paths provided.
The examples of such formats are [Cassandra OutputFormat](08dfa3a7ac/src/main/java/org/apache/cassandra/hadoop2/AbstractColumnFamilyOutputFormat.java), [Aerospike OutputFormat](https://github.com/aerospike/aerospike-hadoop/blob/master/mapreduce/src/main/java/com/aerospike/hadoop/mapreduce/AerospikeOutputFormat.java), etc. which do not have an ability to rollback the results written to an external systems on job failure.

Provided output directory is required by Spark to allows files to be committed to an absolute output location, that is not the case for output formats which write data to external systems.

This pull request prevents accessing `absPathStagingDir` method that causes the error described in SPARK-21549 unless there are files to rename in `addedAbsPathFiles`.

## How was this patch tested?

Unit tests

Author: Sergey Zhemzhitsky <szhemzhitski@gmail.com>

Closes #19294 from szhem/SPARK-21549-abs-output-commits.
2017-10-06 20:43:53 -07:00
Sahil Takiar e36ec38d89 [SPARK-20466][CORE] HadoopRDD#addLocalConfiguration throws NPE
## What changes were proposed in this pull request?

Fix for SPARK-20466, full description of the issue in the JIRA. To summarize, `HadoopRDD` uses a metadata cache to cache `JobConf` objects. The cache uses soft-references, which means the JVM can delete entries from the cache whenever there is GC pressure. `HadoopRDD#getJobConf` had a bug where it would check if the cache contained the `JobConf`, if it did it would get the `JobConf` from the cache and return it. This doesn't work when soft-references are used as the JVM can delete the entry between the existence check and the get call.

## How was this patch tested?

Haven't thought of a good way to test this yet given the issue only occurs sometimes, and happens during high GC pressure. Was thinking of using mocks to verify `#getJobConf` is doing the right thing. I deleted the method `HadoopRDD#containsCachedMetadata` so that we don't hit this issue again.

Author: Sahil Takiar <stakiar@cloudera.com>

Closes #19413 from sahilTakiar/master.
2017-10-03 16:53:32 -07:00
Gene Pang 4329eb2e73 [SPARK-16944][Mesos] Improve data locality when launching new executors when dynamic allocation is enabled
## What changes were proposed in this pull request?

Improve the Spark-Mesos coarse-grained scheduler to consider the preferred locations when dynamic allocation is enabled.

## How was this patch tested?

Added a unittest, and performed manual testing on AWS.

Author: Gene Pang <gene.pang@gmail.com>

Closes #18098 from gpang/mesos_data_locality.
2017-10-02 15:09:11 -07:00
guoxiaolong 405c0e99e7 [SPARK-22173][WEB-UI] Table CSS style needs to be adjusted in History Page and in Executors Page.
## What changes were proposed in this pull request?

There is a problem with table CSS style.

1. At present, table CSS style is too crowded, and the table width cannot adapt itself.

2. Table CSS style is different from job page, stage page, task page, master page, worker page, etc. The Spark web UI needs to be consistent.

fix before:
![01](https://user-images.githubusercontent.com/26266482/31041261-c6766c3a-a5c4-11e7-97a7-96bd51ef12bd.png)

![02](https://user-images.githubusercontent.com/26266482/31041266-d75b6a32-a5c4-11e7-8071-e3bbbba39b80.png)

----------------------------------------------------------------------------------------------------------

fix after:
![1](https://user-images.githubusercontent.com/26266482/31041162-808a5a3e-a5c3-11e7-8d92-d763b500ce53.png)

![2](https://user-images.githubusercontent.com/26266482/31041166-86e583e0-a5c3-11e7-949c-11c370db9e27.png)

## How was this patch tested?

manual tests

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: guoxiaolong <guo.xiaolong1@zte.com.cn>

Closes #19397 from guoxiaolongzte/SPARK-22173.
2017-10-02 08:07:56 +01:00
Reynold Xin 323806e68f [SPARK-22160][SQL] Make sample points per partition (in range partitioner) configurable and bump the default value up to 100
## What changes were proposed in this pull request?
Spark's RangePartitioner hard codes the number of sampling points per partition to be 20. This is sometimes too low. This ticket makes it configurable, via spark.sql.execution.rangeExchange.sampleSizePerPartition, and raises the default in Spark SQL to be 100.

## How was this patch tested?
Added a pretty sophisticated test based on chi square test ...

Author: Reynold Xin <rxin@databricks.com>

Closes #19387 from rxin/SPARK-22160.
2017-09-28 21:07:12 -07:00
zhoukang 3b117d631e [SPARK-22123][CORE] Add latest failure reason for task set blacklist
## What changes were proposed in this pull request?
This patch add latest failure reason for task set blacklist.Which can be showed on spark ui and let user know failure reason directly.
Till now , every job which aborted by completed blacklist just show log like below which has no more information:
`Aborting $taskSet because task $indexInTaskSet (partition $partition) cannot run anywhere due to node and executor blacklist.  Blacklisting behavior cannot run anywhere due to node and executor blacklist.Blacklisting behavior can be configured via spark.blacklist.*."`
**After modify:**
```
Aborting TaskSet 0.0 because task 0 (partition 0)
cannot run anywhere due to node and executor blacklist.
Most recent failure:
Some(Lost task 0.1 in stage 0.0 (TID 3,xxx, executor 1): java.lang.Exception: Fake error!
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:73)
at org.apache.spark.scheduler.Task.run(Task.scala:99)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:305)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
).

Blacklisting behavior can be configured via spark.blacklist.*.

```

## How was this patch tested?

Unit test and manually test.

Author: zhoukang <zhoukang199191@gmail.com>

Closes #19338 from caneGuy/zhoukang/improve-blacklist.
2017-09-28 09:25:21 +08:00
Sean Owen 9b98aef6a3 [HOTFIX][BUILD] Fix finalizer checkstyle error and re-disable checkstyle
## What changes were proposed in this pull request?

Fix finalizer checkstyle violation by just turning it off; re-disable checkstyle as it won't be run by SBT PR builder. See https://github.com/apache/spark/pull/18887#issuecomment-332580700

## How was this patch tested?

`./dev/lint-java` runs successfully

Author: Sean Owen <sowen@cloudera.com>

Closes #19371 from srowen/HotfixFinalizerCheckstlye.
2017-09-27 13:40:21 -07:00
Takuya UESHIN 09cbf3df20 [SPARK-22125][PYSPARK][SQL] Enable Arrow Stream format for vectorized UDF.
## What changes were proposed in this pull request?

Currently we use Arrow File format to communicate with Python worker when invoking vectorized UDF but we can use Arrow Stream format.

This pr replaces the Arrow File format with the Arrow Stream format.

## How was this patch tested?

Existing tests.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #19349 from ueshin/issues/SPARK-22125.
2017-09-27 23:21:44 +09:00
Marcelo Vanzin 74daf622de [SPARK-20642][CORE] Store FsHistoryProvider listing data in a KVStore.
The application listing is still generated from event logs, but is now stored
in a KVStore instance. By default an in-memory store is used, but a new config
allows setting a local disk path to store the data, in which case a LevelDB
store will be created.

The provider stores things internally using the public REST API types; I believe
this is better going forward since it will make it easier to get rid of the
internal history server API which is mostly redundant at this point.

I also added a finalizer to LevelDBIterator, to make sure that resources are
eventually released. This helps when code iterates but does not exhaust the
iterator, thus not triggering the auto-close code.

HistoryServerSuite was modified to not re-start the history server unnecessarily;
this makes the json validation tests run more quickly.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #18887 from vanzin/SPARK-20642.
2017-09-27 20:33:41 +08:00
Imran Rashid 2c5b9b1173 [SPARK-22083][CORE] Release locks in MemoryStore.evictBlocksToFreeSpace
## What changes were proposed in this pull request?

MemoryStore.evictBlocksToFreeSpace acquires write locks for all the
blocks it intends to evict up front.  If there is a failure to evict
blocks (eg., some failure dropping a block to disk), then we have to
release the lock.  Otherwise the lock is never released and an executor
trying to get the lock will wait forever.

## How was this patch tested?

Added unit test.

Author: Imran Rashid <irashid@cloudera.com>

Closes #19311 from squito/SPARK-22083.
2017-09-25 12:02:30 -07:00
Sean Owen 576c43fb42 [SPARK-22087][SPARK-14650][WIP][BUILD][REPL][CORE] Compile Spark REPL for Scala 2.12 + other 2.12 fixes
## What changes were proposed in this pull request?

Enable Scala 2.12 REPL. Fix most remaining issues with 2.12 compilation and warnings, including:

- Selecting Kafka 0.10.1+ for Scala 2.12 and patching over a minor API difference
- Fixing lots of "eta expansion of zero arg method deprecated" warnings
- Resolving the SparkContext.sequenceFile implicits compile problem
- Fixing an odd but valid jetty-server missing dependency in hive-thriftserver

## How was this patch tested?

Existing tests

Author: Sean Owen <sowen@cloudera.com>

Closes #19307 from srowen/Scala212.
2017-09-24 09:40:13 +01:00
zuotingbing 4943ea5984 [SPARK-22058][CORE] the BufferedInputStream will not be closed if an exception occurs.
## What changes were proposed in this pull request?

EventLoggingListener use `val in = new BufferedInputStream(fs.open(log))` and will close it if `codec.map(_.compressedInputStream(in)).getOrElse(in)`  occurs an exception .
But, if `CompressionCodec.createCodec(new SparkConf, c)` throws an exception, the BufferedInputStream `in` will not be closed anymore.

## How was this patch tested?

exist tests

Author: zuotingbing <zuo.tingbing9@zte.com.cn>

Closes #19277 from zuotingbing/SPARK-22058.
2017-09-24 09:38:46 +01:00
hyukjinkwon 9d48bd0b34 [SPARK-22093][TESTS] Fixes assume in UtilsSuite and HiveDDLSuite
## What changes were proposed in this pull request?

This PR proposes to remove `assume` in `Utils.resolveURIs` and replace `assume` to `assert` in `Utils.resolveURI` in the test cases in `UtilsSuite`.

It looks `Utils.resolveURIs` supports multiple but also single paths as input. So, it looks not meaningful to check if the input has `,`.

For the test for `Utils.resolveURI`, I replaced it to `assert` because it looks taking single path and in order to prevent future mistakes when adding more tests here.

For `assume` in `HiveDDLSuite`, it looks it should be `assert` to test at the last
## How was this patch tested?

Fixed unit tests.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #19332 from HyukjinKwon/SPARK-22093.
2017-09-24 17:11:29 +09:00
Sean Owen 50ada2a4d3 [SPARK-22033][CORE] BufferHolder, other size checks should account for the specific VM array size limitations
## What changes were proposed in this pull request?

Try to avoid allocating an array bigger than Integer.MAX_VALUE - 8, which is the actual max size on some JVMs, in several places

## How was this patch tested?

Existing tests

Author: Sean Owen <sowen@cloudera.com>

Closes #19266 from srowen/SPARK-22033.
2017-09-23 15:40:59 +01:00
Bryan Cutler 27fc536d9a [SPARK-21190][PYSPARK] Python Vectorized UDFs
This PR adds vectorized UDFs to the Python API

**Proposed API**
Introduce a flag to turn on vectorization for a defined UDF, for example:

```
pandas_udf(DoubleType())
def plus(a, b)
    return a + b
```
or

```
plus = pandas_udf(lambda a, b: a + b, DoubleType())
```
Usage is the same as normal UDFs

0-parameter UDFs
pandas_udf functions can declare an optional `**kwargs` and when evaluated, will contain a key "size" that will give the required length of the output.  For example:

```
pandas_udf(LongType())
def f0(**kwargs):
    return pd.Series(1).repeat(kwargs["size"])

df.select(f0())
```

Added new unit tests in pyspark.sql that are enabled if pyarrow and Pandas are available.

- [x] Fix support for promoted types with null values
- [ ] Discuss 0-param UDF API (use of kwargs)
- [x] Add tests for chained UDFs
- [ ] Discuss behavior when pyarrow not installed / enabled
- [ ] Cleanup pydoc and add user docs

Author: Bryan Cutler <cutlerb@gmail.com>
Author: Takuya UESHIN <ueshin@databricks.com>

Closes #18659 from BryanCutler/arrow-vectorized-udfs-SPARK-21404.
2017-09-22 16:17:50 +08:00
Imran Rashid b75bd17774 [SPARK-21928][CORE] Set classloader on SerializerManager's private kryo
## What changes were proposed in this pull request?

We have to make sure that SerializerManager's private instance of
kryo also uses the right classloader, regardless of the current thread
classloader.  In particular, this fixes serde during remote cache
fetches, as those occur in netty threads.

## How was this patch tested?

Manual tests & existing suite via jenkins.  I haven't been able to reproduce this is in a unit test, because when a remote RDD partition can be fetched, there is a warning message and then the partition is just recomputed locally.  I manually verified the warning message is no longer present.

Author: Imran Rashid <irashid@cloudera.com>

Closes #19280 from squito/SPARK-21928_ser_classloader.
2017-09-21 10:20:19 -07:00
jerryshao 1da5822e6a [SPARK-21934][CORE] Expose Shuffle Netty memory usage to MetricsSystem
## What changes were proposed in this pull request?

This is a followup work of SPARK-9104 to expose the Netty memory usage to MetricsSystem. Current the shuffle Netty memory usage of `NettyBlockTransferService` will be exposed, if using external shuffle, then the Netty memory usage of `ExternalShuffleClient` and `ExternalShuffleService` will be exposed instead. Currently I don't expose Netty memory usage of `YarnShuffleService`, because `YarnShuffleService` doesn't have `MetricsSystem` itself, and is better to connect to Hadoop's MetricsSystem.

## How was this patch tested?

Manually verified in local cluster.

Author: jerryshao <sshao@hortonworks.com>

Closes #19160 from jerryshao/SPARK-21934.
2017-09-21 13:54:30 +08:00
Sean Owen 3d4dd14cd5 [SPARK-22066][BUILD] Update checkstyle to 8.2, enable it, fix violations
## What changes were proposed in this pull request?

Update plugins, including scala-maven-plugin, to latest versions. Update checkstyle to 8.2. Remove bogus checkstyle config and enable it. Fix existing and new Java checkstyle errors.

## How was this patch tested?

Existing tests

Author: Sean Owen <sowen@cloudera.com>

Closes #19282 from srowen/SPARK-22066.
2017-09-20 10:01:46 +01:00
Marcelo Vanzin c6ff59a230 [SPARK-18838][CORE] Add separate listener queues to LiveListenerBus.
This change modifies the live listener bus so that all listeners are
added to queues; each queue has its own thread to dispatch events,
making it possible to separate slow listeners from other more
performance-sensitive ones.

The public API has not changed - all listeners added with the existing
"addListener" method, which after this change mostly means all
user-defined listeners, end up in a default queue. Internally, there's
an API allowing listeners to be added to specific queues, and that API
is used to separate the internal Spark listeners into 3 categories:
application status listeners (e.g. UI), executor management (e.g. dynamic
allocation), and the event log.

The queueing logic, while abstracted away in a separate class, is kept
as much as possible hidden away from consumers. Aside from choosing their
queue, there's no code change needed to take advantage of queues.

Test coverage relies on existing tests; a few tests had to be tweaked
because they relied on `LiveListenerBus.postToAll` being synchronous,
and the change makes that method asynchronous. Other tests were simplified
not to use the asynchronous LiveListenerBus.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #19211 from vanzin/SPARK-18838.
2017-09-20 13:41:29 +08:00
jerryshao 8319432af6 [SPARK-21917][CORE][YARN] Supporting adding http(s) resources in yarn mode
## What changes were proposed in this pull request?
In the current Spark, when submitting application on YARN with remote resources `./bin/spark-shell --jars http://central.maven.org/maven2/com/github/swagger-akka-http/swagger-akka-http_2.11/0.10.1/swagger-akka-http_2.11-0.10.1.jar --master yarn-client -v`, Spark will be failed with:

```
java.io.IOException: No FileSystem for scheme: http
	at org.apache.hadoop.fs.FileSystem.getFileSystemClass(FileSystem.java:2586)
	at org.apache.hadoop.fs.FileSystem.createFileSystem(FileSystem.java:2593)
	at org.apache.hadoop.fs.FileSystem.access$200(FileSystem.java:91)
	at org.apache.hadoop.fs.FileSystem$Cache.getInternal(FileSystem.java:2632)
	at org.apache.hadoop.fs.FileSystem$Cache.get(FileSystem.java:2614)
	at org.apache.hadoop.fs.FileSystem.get(FileSystem.java:370)
	at org.apache.hadoop.fs.Path.getFileSystem(Path.java:296)
	at org.apache.spark.deploy.yarn.Client.copyFileToRemote(Client.scala:354)
	at org.apache.spark.deploy.yarn.Client.org$apache$spark$deploy$yarn$Client$$distribute$1(Client.scala:478)
	at org.apache.spark.deploy.yarn.Client$$anonfun$prepareLocalResources$11$$anonfun$apply$6.apply(Client.scala:600)
	at org.apache.spark.deploy.yarn.Client$$anonfun$prepareLocalResources$11$$anonfun$apply$6.apply(Client.scala:599)
	at scala.collection.mutable.ArraySeq.foreach(ArraySeq.scala:74)
	at org.apache.spark.deploy.yarn.Client$$anonfun$prepareLocalResources$11.apply(Client.scala:599)
	at org.apache.spark.deploy.yarn.Client$$anonfun$prepareLocalResources$11.apply(Client.scala:598)
	at scala.collection.immutable.List.foreach(List.scala:381)
	at org.apache.spark.deploy.yarn.Client.prepareLocalResources(Client.scala:598)
	at org.apache.spark.deploy.yarn.Client.createContainerLaunchContext(Client.scala:848)
	at org.apache.spark.deploy.yarn.Client.submitApplication(Client.scala:173)
```

This is because `YARN#client` assumes resources are on the Hadoop compatible FS. To fix this problem, here propose to download remote http(s) resources to local and add this local downloaded resources to dist cache. This solution has one downside: remote resources are downloaded and uploaded again, but it only restricted to only remote http(s) resources, also the overhead is not so big. The advantages of this solution is that it is simple and the code changes restricts to only `SparkSubmit`.

## How was this patch tested?

Unit test added, also verified in local cluster.

Author: jerryshao <sshao@hortonworks.com>

Closes #19130 from jerryshao/SPARK-21917.
2017-09-19 22:20:05 +08:00
Armin 7c92351f43 [MINOR][CORE] Cleanup dead code and duplication in Mem. Management
## What changes were proposed in this pull request?

* Removed the method `org.apache.spark.sql.catalyst.expressions.codegen.UnsafeRowWriter#alignToWords`.
It became unused as a result of 85b0a15754
(SPARK-15962) introducing word alignment for unsafe arrays.
* Cleaned up duplicate code in memory management and unsafe sorters
  * The change extracting the exception paths is more than just cosmetics since it def. reduces the size the affected methods compile to

## How was this patch tested?

* Build still passes after removing the method, grepping the codebase for `alignToWords` shows no reference to it anywhere either.
* Dried up code is covered by existing tests.

Author: Armin <me@obrown.io>

Closes #19254 from original-brownbear/cleanup-mem-consumer.
2017-09-19 10:06:32 +01:00
Xianyang Liu a11db942aa [SPARK-21923][CORE] Avoid calling reserveUnrollMemoryForThisTask for every record
## What changes were proposed in this pull request?
When Spark persist data to Unsafe memory, we call  the method `MemoryStore.putIteratorAsBytes`, which need synchronize the `memoryManager` for every record write. This implementation is not necessary, we can apply for more memory at a time to reduce unnecessary synchronization.

## How was this patch tested?

Test case (with 1 executor 20 core):
```scala
val start = System.currentTimeMillis()
val data = sc.parallelize(0 until Integer.MAX_VALUE, 100)
      .persist(StorageLevel.OFF_HEAP)
      .count()

println(System.currentTimeMillis() - start)

```

Test result:

before

|  27647  |  29108  |  28591  |  28264  |  27232  |

after

|  26868  |  26358  |  27767  |  26653  |  26693  |

Author: Xianyang Liu <xianyang.liu@intel.com>

Closes #19135 from ConeyLiu/memorystore.
2017-09-19 14:51:27 +08:00
alexmnyc 94f7e046a2 [SPARK-22030][CORE] GraphiteSink fails to re-connect to Graphite instances behind an ELB or any other auto-scaled LB
## What changes were proposed in this pull request?

Upgrade codahale metrics library so that Graphite constructor can re-resolve hosts behind a CNAME with re-tried DNS lookups. When Graphite is deployed behind an ELB, ELB may change IP addresses based on auto-scaling needs. Using current approach yields Graphite usage impossible, fixing for that use case

- Upgrade to codahale 3.1.5
- Use new Graphite(host, port) constructor instead of new Graphite(new InetSocketAddress(host, port)) constructor

## How was this patch tested?

The same logic is used for another project that is using the same configuration and code path, and graphite re-connect's behind ELB's are no longer an issue

This are proposed changes for codahale lib - https://github.com/dropwizard/metrics/compare/v3.1.2...v3.1.5#diff-6916c85d2dd08d89fe771c952e3b8512R120. Specifically, b4d246d34e/metrics-graphite/src/main/java/com/codahale/metrics/graphite/Graphite.java (L120)

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: alexmnyc <project@alexandermarkham.com>

Closes #19210 from alexmnyc/patch-1.
2017-09-19 10:05:59 +08:00
Sital Kedia 1e978b17d6 [SPARK-21113][CORE] Read ahead input stream to amortize disk IO cost …
Profiling some of our big jobs, we see that around 30% of the time is being spent in reading the spill files from disk. In order to amortize the disk IO cost, the idea is to implement a read ahead input stream which asynchronously reads ahead from the underlying input stream when specified amount of data has been read from the current buffer. It does it by maintaining two buffer - active buffer and read ahead buffer. The active buffer contains data which should be returned when a read() call is issued. The read-ahead buffer is used to asynchronously read from the underlying input stream and once the active buffer is exhausted, we flip the two buffers so that we can start reading from the read ahead buffer without being blocked in disk I/O.

## How was this patch tested?

Tested by running a job on the cluster and could see up to 8% CPU improvement.

Author: Sital Kedia <skedia@fb.com>
Author: Shixiong Zhu <zsxwing@gmail.com>
Author: Sital Kedia <sitalkedia@users.noreply.github.com>

Closes #18317 from sitalkedia/read_ahead_buffer.
2017-09-17 23:15:08 -07:00
Andrew Ash 6308c65f08 [SPARK-21953] Show both memory and disk bytes spilled if either is present
As written now, there must be both memory and disk bytes spilled to show either of them. If there is only one of those types of spill recorded, it will be hidden.

Author: Andrew Ash <andrew@andrewash.com>

Closes #19164 from ash211/patch-3.
2017-09-18 10:42:24 +08:00
zhoukang 22b111ef9d [SPARK-21902][CORE] Print root cause for BlockManager#doPut
## What changes were proposed in this pull request?

As logging below, actually exception will be hidden when removeBlockInternal throw an exception.
`2017-08-31,10:26:57,733 WARN org.apache.spark.storage.BlockManager: Putting block broadcast_110 failed due to an exception
2017-08-31,10:26:57,734 WARN org.apache.spark.broadcast.BroadcastManager: Failed to create a new broadcast in 1 attempts
java.io.IOException: Failed to create local dir in /tmp/blockmgr-5bb5ac1e-c494-434a-ab89-bd1808c6b9ed/2e.
        at org.apache.spark.storage.DiskBlockManager.getFile(DiskBlockManager.scala:70)
        at org.apache.spark.storage.DiskStore.remove(DiskStore.scala:115)
        at org.apache.spark.storage.BlockManager.removeBlockInternal(BlockManager.scala:1339)
        at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:910)
        at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:948)
        at org.apache.spark.storage.BlockManager.putIterator(BlockManager.scala:726)
        at org.apache.spark.storage.BlockManager.putSingle(BlockManager.scala:1233)
        at org.apache.spark.broadcast.TorrentBroadcast.writeBlocks(TorrentBroadcast.scala:122)
        at org.apache.spark.broadcast.TorrentBroadcast.<init>(TorrentBroadcast.scala:88)
        at org.apache.spark.broadcast.TorrentBroadcastFactory.newBroadcast(TorrentBroadcastFactory.scala:34)
        at org.apache.spark.broadcast.BroadcastManager$$anonfun$newBroadcast$1.apply$mcVI$sp(BroadcastManager.scala:60)
        at scala.collection.immutable.Range.foreach$mVc$sp(Range.scala:160)
        at org.apache.spark.broadcast.BroadcastManager.newBroadcast(BroadcastManager.scala:58)
        at org.apache.spark.SparkContext.broadcast(SparkContext.scala:1415)
        at org.apache.spark.scheduler.DAGScheduler.submitMissingTasks(DAGScheduler.scala:1002)
        at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$submitStage(DAGScheduler.scala:924)
        at org.apache.spark.scheduler.DAGScheduler$$anonfun$submitWaitingChildStages$6.apply(DAGScheduler.scala:771)
        at org.apache.spark.scheduler.DAGScheduler$$anonfun$submitWaitingChildStages$6.apply(DAGScheduler.scala:770)
        at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
        at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:186)
        at org.apache.spark.scheduler.DAGScheduler.submitWaitingChildStages(DAGScheduler.scala:770)
        at org.apache.spark.scheduler.DAGScheduler.handleTaskCompletion(DAGScheduler.scala:1235)
        at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1662)
        at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1620)
        at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1609)
        at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)`

In this pr i will print exception first make troubleshooting more conveniently.
PS:
This one split from [PR-19133](https://github.com/apache/spark/pull/19133)

## How was this patch tested?
Exsist unit test

Author: zhoukang <zhoukang199191@gmail.com>

Closes #19171 from caneGuy/zhoukang/print-rootcause.
2017-09-15 14:03:26 +08:00
zhoukang 4b88393cb9 [SPARK-21922] Fix duration always updating when task failed but status is still RUN…
…NING

## What changes were proposed in this pull request?
When driver quit abnormally which cause executor shutdown and task metrics can not be sent to driver for updating.In this case the status will always be 'RUNNING' and the duration on history UI will be 'CurrentTime - launchTime' which increase infinitely.
We can fix this time by modify time of event log since this time has gotten when `FSHistoryProvider` fetch event log from File System.
And the result picture is uploaded in [SPARK-21922](https://issues.apache.org/jira/browse/SPARK-21922).
How to reproduce?
(1) Submit a job to spark on yarn
(2) Mock an oom(or other case can make driver quit abnormally)  senario for driver
(3) Make sure executor is running task when driver quitting
(4) Open the history server and checkout result
It is not a corner case since there are many such jobs in our current cluster.

## How was this patch tested?
Deploy historyserver and open a job has this problem.

Author: zhoukang <zhoukang199191@gmail.com>

Closes #19132 from caneGuy/zhoukang/fix-duration.
2017-09-14 20:40:33 +08:00
Zheng RuiFeng 66cb72d7b9 [MINOR][DOC] Add missing call of update() in examples of PeriodicGraphCheckpointer & PeriodicRDDCheckpointer
## What changes were proposed in this pull request?
forgot to call `update()` with `graph1` & `rdd1` in examples for `PeriodicGraphCheckpointer` & `PeriodicRDDCheckpoin`
## How was this patch tested?
existing tests

Author: Zheng RuiFeng <ruifengz@foxmail.com>

Closes #19198 from zhengruifeng/fix_doc_checkpointer.
2017-09-14 14:04:43 +08:00
Armin b6ef1f57bc [SPARK-21970][CORE] Fix Redundant Throws Declarations in Java Codebase
## What changes were proposed in this pull request?

1. Removing all redundant throws declarations from Java codebase.
2. Removing dead code made visible by this from `ShuffleExternalSorter#closeAndGetSpills`

## How was this patch tested?

Build still passes.

Author: Armin <me@obrown.io>

Closes #19182 from original-brownbear/SPARK-21970.
2017-09-13 14:04:26 +01:00
caoxuewen ca00cc70d6 [SPARK-21963][CORE][TEST] Create temp file should be delete after use
## What changes were proposed in this pull request?

After you create a temporary table, you need to delete it, otherwise it will leave a file similar to the file name ‘SPARK194465907929586320484966temp’.

## How was this patch tested?

N / A

Author: caoxuewen <cao.xuewen@zte.com.cn>

Closes #19174 from heary-cao/DeleteTempFile.
2017-09-13 13:01:30 +01:00
German Schiavon a1d98c6dcd [SPARK-21982] Set locale to US
## What changes were proposed in this pull request?

In UtilsSuite Locale was set by default to US, but at the moment of using format function it wasn't, taking by default JVM locale which could be different than US making this test fail.

## How was this patch tested?
Unit test (UtilsSuite)

Author: German Schiavon <germanschiavon@gmail.com>

Closes #19205 from Gschiavon/fix/test-locale.
2017-09-13 09:52:45 +01:00
caoxuewen dc74c0e67d [MINOR][SQL] remove unuse import class
## What changes were proposed in this pull request?

this PR describe remove the import class that are unused.

## How was this patch tested?

N/A

Author: caoxuewen <cao.xuewen@zte.com.cn>

Closes #19131 from heary-cao/unuse_import.
2017-09-11 10:09:20 +01:00
Dongjoon Hyun c26976fe14 [SPARK-21939][TEST] Use TimeLimits instead of Timeouts
Since ScalaTest 3.0.0, `org.scalatest.concurrent.Timeouts` is deprecated.
This PR replaces the deprecated one with `org.scalatest.concurrent.TimeLimits`.

```scala
-import org.scalatest.concurrent.Timeouts._
+import org.scalatest.concurrent.TimeLimits._
```

Pass the existing test suites.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #19150 from dongjoon-hyun/SPARK-21939.

Change-Id: I1a1b07f1b97e51e2263dfb34b7eaaa099b2ded5e
2017-09-08 09:31:13 +08:00
Sanket Chintapalli b9ab791a9e [SPARK-21890] Credentials not being passed to add the tokens
I observed this while running a oozie job trying to connect to hbase via spark.
It look like the creds are not being passed in thehttps://github.com/apache/spark/blob/branch-2.2/resource-managers/yarn/src/main/scala/org/apache/spark/deploy/yarn/security/HadoopFSCredentialProvider.scala#L53 for 2.2 release.
More Info as to why it fails on secure grid:
Oozie client gets the necessary tokens the application needs before launching. It passes those tokens along to the oozie launcher job (MR job) which will then actually call the Spark client to launch the spark app and pass the tokens along.
The oozie launcher job cannot get anymore tokens because all it has is tokens ( you can't get tokens with tokens, you need tgt or keytab).
The error here is because the launcher job runs the Spark Client to submit the spark job but the spark client doesn't see that it already has the hdfs tokens so it tries to get more, which ends with the exception.
There was a change with SPARK-19021 to generalize the hdfs credentials provider that changed it so we don't pass the existing credentials into the call to get tokens so it doesn't realize it already has the necessary tokens.

https://issues.apache.org/jira/browse/SPARK-21890
Modified to pass creds to get delegation tokens

Author: Sanket Chintapalli <schintap@yahoo-inc.com>

Closes #19140 from redsanket/SPARK-21890-master.
2017-09-07 11:25:24 -05:00
Sean Owen ca59445adb [SPARK-21418][SQL] NoSuchElementException: None.get in DataSourceScanExec with sun.io.serialization.extendedDebugInfo=true
## What changes were proposed in this pull request?

If no SparkConf is available to Utils.redact, simply don't redact.

## How was this patch tested?

Existing tests

Author: Sean Owen <sowen@cloudera.com>

Closes #19123 from srowen/SPARK-21418.
2017-09-04 23:02:59 +02:00
Sean Owen 12ab7f7e89 [SPARK-14280][BUILD][WIP] Update change-version.sh and pom.xml to add Scala 2.12 profiles and enable 2.12 compilation
…build; fix some things that will be warnings or errors in 2.12; restore Scala 2.12 profile infrastructure

## What changes were proposed in this pull request?

This change adds back the infrastructure for a Scala 2.12 build, but does not enable it in the release or Python test scripts.

In order to make that meaningful, it also resolves compile errors that the code hits in 2.12 only, in a way that still works with 2.11.

It also updates dependencies to the earliest minor release of dependencies whose current version does not yet support Scala 2.12. This is in a sense covered by other JIRAs under the main umbrella, but implemented here. The versions below still work with 2.11, and are the _latest_ maintenance release in the _earliest_ viable minor release.

- Scalatest 2.x -> 3.0.3
- Chill 0.8.0 -> 0.8.4
- Clapper 1.0.x -> 1.1.2
- json4s 3.2.x -> 3.4.2
- Jackson 2.6.x -> 2.7.9 (required by json4s)

This change does _not_ fully enable a Scala 2.12 build:

- It will also require dropping support for Kafka before 0.10. Easy enough, just didn't do it yet here
- It will require recreating `SparkILoop` and `Main` for REPL 2.12, which is SPARK-14650. Possible to do here too.

What it does do is make changes that resolve much of the remaining gap without affecting the current 2.11 build.

## How was this patch tested?

Existing tests and build. Manually tested with `./dev/change-scala-version.sh 2.12` to verify it compiles, modulo the exceptions above.

Author: Sean Owen <sowen@cloudera.com>

Closes #18645 from srowen/SPARK-14280.
2017-09-01 19:21:21 +01:00
Marcelo Vanzin 0bdbefe9dd [SPARK-21728][CORE] Follow up: fix user config, auth in SparkSubmit logging.
- SecurityManager complains when auth is enabled but no secret is defined;
  SparkSubmit doesn't use the auth functionality of the SecurityManager,
  so use a dummy secret to work around the exception.

- Only reset the log4j configuration when Spark was the one initializing
  it, otherwise user-defined log configuration may be lost.

Tested with the log config file posted to the bug, on a secured YARN cluster.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #19089 from vanzin/SPARK-21728.
2017-09-01 10:29:36 -07:00
Liang-Chi Hsieh ecf437a648 [SPARK-21534][SQL][PYSPARK] PickleException when creating dataframe from python row with empty bytearray
## What changes were proposed in this pull request?

`PickleException` is thrown when creating dataframe from python row with empty bytearray

    spark.createDataFrame(spark.sql("select unhex('') as xx").rdd.map(lambda x: {"abc": x.xx})).show()

    net.razorvine.pickle.PickleException: invalid pickle data for bytearray; expected 1 or 2 args, got 0
    	at net.razorvine.pickle.objects.ByteArrayConstructor.construct(ByteArrayConstructor.java
        ...

`ByteArrayConstructor` doesn't deal with empty byte array pickled by Python3.

## How was this patch tested?

Added test.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #19085 from viirya/SPARK-21534.
2017-08-31 12:55:38 +09:00
Xiaofeng Lin cd5d0f3379 [SPARK-11574][CORE] Add metrics StatsD sink
This patch adds statsd sink to the current metrics system in spark core.

Author: Xiaofeng Lin <xlin@twilio.com>

Closes #9518 from xflin/statsd.

Change-Id: Ib8720e86223d4a650df53f51ceb963cd95b49a44
2017-08-31 08:57:15 +08:00
Andrew Ash 313c6ca435 [SPARK-21875][BUILD] Fix Java style bugs
## What changes were proposed in this pull request?

Fix Java code style so `./dev/lint-java` succeeds

## How was this patch tested?

Run `./dev/lint-java`

Author: Andrew Ash <andrew@andrewash.com>

Closes #19088 from ash211/spark-21875-lint-java.
2017-08-31 09:26:11 +09:00
Sital Kedia 6949a9c5c6 [SPARK-21834] Incorrect executor request in case of dynamic allocation
## What changes were proposed in this pull request?

killExecutor api currently does not allow killing an executor without updating the total number of executors needed. In case of dynamic allocation is turned on and the allocator tries to kill an executor, the scheduler reduces the total number of executors needed ( see https://github.com/apache/spark/blob/master/core/src/main/scala/org/apache/spark/scheduler/cluster/CoarseGrainedSchedulerBackend.scala#L635) which is incorrect because the allocator already takes care of setting the required number of executors itself.

## How was this patch tested?

Ran a job on the cluster and made sure the executor request is correct

Author: Sital Kedia <skedia@fb.com>

Closes #19081 from sitalkedia/skedia/oss_fix_executor_allocation.
2017-08-30 14:19:13 -07:00
hyukjinkwon b30a11a6ac [SPARK-21764][TESTS] Fix tests failures on Windows: resources not being closed and incorrect paths
## What changes were proposed in this pull request?

`org.apache.spark.deploy.RPackageUtilsSuite`

```
 - jars without manifest return false *** FAILED *** (109 milliseconds)
   java.io.IOException: Unable to delete file: C:\projects\spark\target\tmp\1500266936418-0\dep1-c.jar
```

`org.apache.spark.deploy.SparkSubmitSuite`

```
 - download one file to local *** FAILED *** (16 milliseconds)
   java.net.URISyntaxException: Illegal character in authority at index 6: s3a://C:\projects\spark\target\tmp\test2630198944759847458.jar

 - download list of files to local *** FAILED *** (0 milliseconds)
   java.net.URISyntaxException: Illegal character in authority at index 6: s3a://C:\projects\spark\target\tmp\test2783551769392880031.jar
```

`org.apache.spark.scheduler.ReplayListenerSuite`

```
 - Replay compressed inprogress log file succeeding on partial read (156 milliseconds)
   Exception encountered when attempting to run a suite with class name:
   org.apache.spark.scheduler.ReplayListenerSuite *** ABORTED *** (1 second, 391 milliseconds)
   java.io.IOException: Failed to delete: C:\projects\spark\target\tmp\spark-8f3cacd6-faad-4121-b901-ba1bba8025a0

 - End-to-end replay *** FAILED *** (62 milliseconds)
   java.io.IOException: No FileSystem for scheme: C

 - End-to-end replay with compression *** FAILED *** (110 milliseconds)
   java.io.IOException: No FileSystem for scheme: C
```

`org.apache.spark.sql.hive.StatisticsSuite`

```
 - SPARK-21079 - analyze table with location different than that of individual partitions *** FAILED *** (875 milliseconds)
   org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);

 - SPARK-21079 - analyze partitioned table with only a subset of partitions visible *** FAILED *** (47 milliseconds)
   org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
```

**Note:** this PR does not fix:

`org.apache.spark.deploy.SparkSubmitSuite`

```
 - launch simple application with spark-submit with redaction *** FAILED *** (172 milliseconds)
   java.util.NoSuchElementException: next on empty iterator
```

I can't reproduce this on my Windows machine but looks appearntly consistently failed on AppVeyor. This one is unclear to me yet and hard to debug so I did not include this one for now.

**Note:** it looks there are more instances but it is hard to identify them partly due to flakiness and partly due to swarming logs and errors. Will probably go one more time if it is fine.

## How was this patch tested?

Manually via AppVeyor:

**Before**

- `org.apache.spark.deploy.RPackageUtilsSuite`: https://ci.appveyor.com/project/spark-test/spark/build/771-windows-fix/job/8t8ra3lrljuir7q4
- `org.apache.spark.deploy.SparkSubmitSuite`: https://ci.appveyor.com/project/spark-test/spark/build/771-windows-fix/job/taquy84yudjjen64
- `org.apache.spark.scheduler.ReplayListenerSuite`: https://ci.appveyor.com/project/spark-test/spark/build/771-windows-fix/job/24omrfn2k0xfa9xq
- `org.apache.spark.sql.hive.StatisticsSuite`: https://ci.appveyor.com/project/spark-test/spark/build/771-windows-fix/job/2079y1plgj76dc9l

**After**

- `org.apache.spark.deploy.RPackageUtilsSuite`: https://ci.appveyor.com/project/spark-test/spark/build/775-windows-fix/job/3803dbfn89ne1164
- `org.apache.spark.deploy.SparkSubmitSuite`: https://ci.appveyor.com/project/spark-test/spark/build/775-windows-fix/job/m5l350dp7u9a4xjr
- `org.apache.spark.scheduler.ReplayListenerSuite`: https://ci.appveyor.com/project/spark-test/spark/build/775-windows-fix/job/565vf74pp6bfdk18
- `org.apache.spark.sql.hive.StatisticsSuite`: https://ci.appveyor.com/project/spark-test/spark/build/775-windows-fix/job/qm78tsk8c37jb6s4

Jenkins tests are required and AppVeyor tests will be triggered.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #18971 from HyukjinKwon/windows-fixes.
2017-08-30 21:35:52 +09:00
liuxian d4895c9de6 [MINOR][TEST] Off -heap memory leaks for unit tests
## What changes were proposed in this pull request?
Free off -heap memory .
I have checked all the unit tests.

## How was this patch tested?
N/A

Author: liuxian <liu.xian3@zte.com.cn>

Closes #19075 from 10110346/memleak.
2017-08-30 10:16:11 +01:00
Steve Loughran e47f48c737 [SPARK-20886][CORE] HadoopMapReduceCommitProtocol to handle FileOutputCommitter.getWorkPath==null
## What changes were proposed in this pull request?

Handles the situation where a `FileOutputCommitter.getWorkPath()` returns `null` by downgrading to the supplied `path` argument.

The existing code does an  `Option(workPath.toString).getOrElse(path)`, which triggers an NPE in the `toString()` operation if the workPath == null. The code apparently was meant to handle this (hence the getOrElse() clause, but as the NPE has already occurred at that point the else-clause never gets invoked.

## How was this patch tested?

Manually, with some later code review.

Author: Steve Loughran <stevel@hortonworks.com>

Closes #18111 from steveloughran/cloud/SPARK-20886-committer-NPE.
2017-08-30 13:03:30 +09:00
he.qiao fba9cc8466 [SPARK-21813][CORE] Modify TaskMemoryManager.MAXIMUM_PAGE_SIZE_BYTES comments
## What changes were proposed in this pull request?
The variable "TaskMemoryManager.MAXIMUM_PAGE_SIZE_BYTES" comment error, It shouldn't be 2^32-1, should be 2^31-1, That means the maximum value of int.

## How was this patch tested?
Existing test cases

Author: he.qiao <he.qiao17@zte.com.cn>

Closes #19025 from Geek-He/08_23_comments.
2017-08-29 23:44:27 +01:00
Marcelo Vanzin d7b1fcf8f0 [SPARK-21728][CORE] Allow SparkSubmit to use Logging.
This change initializes logging when SparkSubmit runs, using
a configuration that should avoid printing log messages as
much as possible with most configurations, and adds code to
restore the Spark logging system to as close as possible to
its initial state, so the Spark app being run can re-initialize
logging with its own configuration.

With that feature, some duplicate code in SparkSubmit can now
be replaced with the existing methods in the Utils class, which
could not be used before because they initialized logging. As part
of that I also did some minor refactoring, moving methods that
should really belong in DependencyUtils.

The change also shuffles some code in SparkHadoopUtil so that
SparkSubmit can create a Hadoop config like the rest of Spark
code, respecting the user's Spark configuration.

The behavior was verified running spark-shell, pyspark and
normal applications, then verifying the logging behavior,
with and without dependency downloads.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #19013 from vanzin/SPARK-21728.
2017-08-29 14:42:24 -07:00
erenavsarogullari 73e64f7d50 [SPARK-19662][SCHEDULER][TEST] Add Fair Scheduler Unit Test coverage for different build cases
## What changes were proposed in this pull request?
Fair Scheduler can be built via one of the following options:
- By setting a `spark.scheduler.allocation.file` property,
- By setting `fairscheduler.xml` into classpath.

These options are checked **in order** and fair-scheduler is built via first found option. If invalid path is found, `FileNotFoundException` will be expected.

This PR aims unit test coverage of these use cases and a minor documentation change has been added for second option(`fairscheduler.xml` into classpath) to inform the users.

Also, this PR was related with #16813 and has been created separately to keep patch content as isolated and to help the reviewers.

## How was this patch tested?
Added new Unit Tests.

Author: erenavsarogullari <erenavsarogullari@gmail.com>

Closes #16992 from erenavsarogullari/SPARK-19662.
2017-08-28 14:54:00 -05:00
jerryshao 1813c4a8dd [SPARK-21714][CORE][YARN] Avoiding re-uploading remote resources in yarn client mode
## What changes were proposed in this pull request?

With SPARK-10643, Spark supports download resources from remote in client deploy mode. But the implementation overrides variables which representing added resources (like `args.jars`, `args.pyFiles`) to local path, And yarn client leverage this local path to re-upload resources to distributed cache. This is unnecessary to break the semantics of putting resources in a shared FS. So here proposed to fix it.

## How was this patch tested?

This is manually verified with jars, pyFiles in local and remote storage, both in client and cluster mode.

Author: jerryshao <sshao@hortonworks.com>

Closes #18962 from jerryshao/SPARK-21714.
2017-08-25 09:57:53 -07:00
Sean Owen de7af295c2 [MINOR][BUILD] Fix build warnings and Java lint errors
## What changes were proposed in this pull request?

Fix build warnings and Java lint errors. This just helps a bit in evaluating (new) warnings in another PR I have open.

## How was this patch tested?

Existing tests

Author: Sean Owen <sowen@cloudera.com>

Closes #19051 from srowen/JavaWarnings.
2017-08-25 16:07:13 +01:00
zhoukang 574ef6c987 [SPARK-21527][CORE] Use buffer limit in order to use JAVA NIO Util's buffercache
## What changes were proposed in this pull request?

Right now, ChunkedByteBuffer#writeFully do not slice bytes first.We observe code in java nio Util#getTemporaryDirectBuffer below:

        BufferCache cache = bufferCache.get();
        ByteBuffer buf = cache.get(size);
        if (buf != null) {
            return buf;
        } else {
            // No suitable buffer in the cache so we need to allocate a new
            // one. To avoid the cache growing then we remove the first
            // buffer from the cache and free it.
            if (!cache.isEmpty()) {
                buf = cache.removeFirst();
                free(buf);
            }
            return ByteBuffer.allocateDirect(size);
        }

If we slice first with a fixed size, we can use buffer cache and only need to allocate at the first write call.
Since we allocate new buffer, we can not control the free time of this buffer.This once cause memory issue in our production cluster.
In this patch, i supply a new api which will slice with fixed size for buffer writing.

## How was this patch tested?

Unit test and test in production.

Author: zhoukang <zhoukang199191@gmail.com>
Author: zhoukang <zhoukang@xiaomi.com>

Closes #18730 from caneGuy/zhoukang/improve-chunkwrite.
2017-08-25 22:59:31 +08:00
Sanket Chintapalli 1662e93119 [SPARK-21501] Change CacheLoader to limit entries based on memory footprint
Right now the spark shuffle service has a cache for index files. It is based on a # of files cached (spark.shuffle.service.index.cache.entries). This can cause issues if people have a lot of reducers because the size of each entry can fluctuate based on the # of reducers.
We saw an issues with a job that had 170000 reducers and it caused NM with spark shuffle service to use 700-800MB or memory in NM by itself.
We should change this cache to be memory based and only allow a certain memory size used. When I say memory based I mean the cache should have a limit of say 100MB.

https://issues.apache.org/jira/browse/SPARK-21501

Manual Testing with 170000 reducers has been performed with cache loaded up to max 100MB default limit, with each shuffle index file of size 1.3MB. Eviction takes place as soon as the total cache size reaches the 100MB limit and the objects will be ready for garbage collection there by avoiding NM to crash. No notable difference in runtime has been observed.

Author: Sanket Chintapalli <schintap@yahoo-inc.com>

Closes #18940 from redsanket/SPARK-21501.
2017-08-23 11:51:11 -05:00
Jane Wang d58a3507ed [SPARK-19326] Speculated task attempts do not get launched in few scenarios
## What changes were proposed in this pull request?

Add a new listener event when a speculative task is created and notify it to ExecutorAllocationManager for requesting more executor.

## How was this patch tested?

- Added Unittests.
- For the test snippet in the jira:
val n = 100
val someRDD = sc.parallelize(1 to n, n)
someRDD.mapPartitionsWithIndex( (index: Int, it: Iterator[Int]) => {
if (index == 1) {
Thread.sleep(Long.MaxValue) // fake long running task(s)
}
it.toList.map(x => index + ", " + x).iterator
}).collect
With this code change, spark indicates 101 jobs are running (99 succeeded, 2 running and 1 is speculative job)

Author: Jane Wang <janewang@fb.com>

Closes #18492 from janewangfb/speculated_task_not_launched.
2017-08-23 11:31:54 +08:00
jerryshao 3ed1ae1005 [SPARK-20641][CORE] Add missing kvstore module in Laucher and SparkSubmit code
There're two code in Launcher and SparkSubmit will will explicitly list all the Spark submodules, newly added kvstore module is missing in this two parts, so submitting a minor PR to fix this.

Author: jerryshao <sshao@hortonworks.com>

Closes #19014 from jerryshao/missing-kvstore.
2017-08-22 10:14:45 -07:00
Sergey Serebryakov 77d046ec47 [SPARK-21782][CORE] Repartition creates skews when numPartitions is a power of 2
## Problem
When an RDD (particularly with a low item-per-partition ratio) is repartitioned to numPartitions = power of 2, the resulting partitions are very uneven-sized, due to using fixed seed to initialize PRNG, and using the PRNG only once. See details in https://issues.apache.org/jira/browse/SPARK-21782

## What changes were proposed in this pull request?
Instead of directly using `0, 1, 2,...` seeds to initialize `Random`, hash them with `scala.util.hashing.byteswap32()`.

## How was this patch tested?
`build/mvn -Dtest=none -DwildcardSuites=org.apache.spark.rdd.RDDSuite test`

Author: Sergey Serebryakov <sserebryakov@tesla.com>

Closes #18990 from megaserg/repartition-skew.
2017-08-21 08:21:25 +01:00
ArtRand bfdc361ede [SPARK-16742] Mesos Kerberos Support
## What changes were proposed in this pull request?

Add Kerberos Support to Mesos.   This includes kinit and --keytab support, but does not include delegation token renewal.

## How was this patch tested?

Manually against a Secure DC/OS Apache HDFS cluster.

Author: ArtRand <arand@soe.ucsc.edu>
Author: Michael Gummelt <mgummelt@mesosphere.io>

Closes #18519 from mgummelt/SPARK-16742-kerberos.
2017-08-17 15:47:07 -07:00
Kent Yao b83b502c41 [SPARK-21428] Turn IsolatedClientLoader off while using builtin Hive jars for reusing CliSessionState
## What changes were proposed in this pull request?

Set isolated to false while using builtin hive jars and `SessionState.get` returns a `CliSessionState` instance.

## How was this patch tested?

1 Unit Tests
2 Manually verified: `hive.exec.strachdir` was only created once because of reusing cliSessionState
```java
➜  spark git:(SPARK-21428) ✗ bin/spark-sql --conf spark.sql.hive.metastore.jars=builtin

log4j:WARN No appenders could be found for logger (org.apache.hadoop.util.Shell).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
Using Spark's default log4j profile: org/apache/spark/log4j-defaults.properties
17/07/16 23:59:27 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
17/07/16 23:59:27 INFO HiveMetaStore: 0: Opening raw store with implemenation class:org.apache.hadoop.hive.metastore.ObjectStore
17/07/16 23:59:27 INFO ObjectStore: ObjectStore, initialize called
17/07/16 23:59:28 INFO Persistence: Property hive.metastore.integral.jdo.pushdown unknown - will be ignored
17/07/16 23:59:28 INFO Persistence: Property datanucleus.cache.level2 unknown - will be ignored
17/07/16 23:59:29 INFO ObjectStore: Setting MetaStore object pin classes with hive.metastore.cache.pinobjtypes="Table,StorageDescriptor,SerDeInfo,Partition,Database,Type,FieldSchema,Order"
17/07/16 23:59:30 INFO Datastore: The class "org.apache.hadoop.hive.metastore.model.MFieldSchema" is tagged as "embedded-only" so does not have its own datastore table.
17/07/16 23:59:30 INFO Datastore: The class "org.apache.hadoop.hive.metastore.model.MOrder" is tagged as "embedded-only" so does not have its own datastore table.
17/07/16 23:59:31 INFO Datastore: The class "org.apache.hadoop.hive.metastore.model.MFieldSchema" is tagged as "embedded-only" so does not have its own datastore table.
17/07/16 23:59:31 INFO Datastore: The class "org.apache.hadoop.hive.metastore.model.MOrder" is tagged as "embedded-only" so does not have its own datastore table.
17/07/16 23:59:31 INFO MetaStoreDirectSql: Using direct SQL, underlying DB is DERBY
17/07/16 23:59:31 INFO ObjectStore: Initialized ObjectStore
17/07/16 23:59:31 WARN ObjectStore: Version information not found in metastore. hive.metastore.schema.verification is not enabled so recording the schema version 1.2.0
17/07/16 23:59:31 WARN ObjectStore: Failed to get database default, returning NoSuchObjectException
17/07/16 23:59:32 INFO HiveMetaStore: Added admin role in metastore
17/07/16 23:59:32 INFO HiveMetaStore: Added public role in metastore
17/07/16 23:59:32 INFO HiveMetaStore: No user is added in admin role, since config is empty
17/07/16 23:59:32 INFO HiveMetaStore: 0: get_all_databases
17/07/16 23:59:32 INFO audit: ugi=Kent	ip=unknown-ip-addr	cmd=get_all_databases
17/07/16 23:59:32 INFO HiveMetaStore: 0: get_functions: db=default pat=*
17/07/16 23:59:32 INFO audit: ugi=Kent	ip=unknown-ip-addr	cmd=get_functions: db=default pat=*
17/07/16 23:59:32 INFO Datastore: The class "org.apache.hadoop.hive.metastore.model.MResourceUri" is tagged as "embedded-only" so does not have its own datastore table.
17/07/16 23:59:32 INFO SessionState: Created local directory: /var/folders/k2/04p4k4ws73l6711h_mz2_tq00000gn/T/beea7261-221a-4711-89e8-8b12a9d37370_resources
17/07/16 23:59:32 INFO SessionState: Created HDFS directory: /tmp/hive/Kent/beea7261-221a-4711-89e8-8b12a9d37370
17/07/16 23:59:32 INFO SessionState: Created local directory: /var/folders/k2/04p4k4ws73l6711h_mz2_tq00000gn/T/Kent/beea7261-221a-4711-89e8-8b12a9d37370
17/07/16 23:59:32 INFO SessionState: Created HDFS directory: /tmp/hive/Kent/beea7261-221a-4711-89e8-8b12a9d37370/_tmp_space.db
17/07/16 23:59:32 INFO SparkContext: Running Spark version 2.3.0-SNAPSHOT
17/07/16 23:59:32 INFO SparkContext: Submitted application: SparkSQL::10.0.0.8
17/07/16 23:59:32 INFO SecurityManager: Changing view acls to: Kent
17/07/16 23:59:32 INFO SecurityManager: Changing modify acls to: Kent
17/07/16 23:59:32 INFO SecurityManager: Changing view acls groups to:
17/07/16 23:59:32 INFO SecurityManager: Changing modify acls groups to:
17/07/16 23:59:32 INFO SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users  with view permissions: Set(Kent); groups with view permissions: Set(); users  with modify permissions: Set(Kent); groups with modify permissions: Set()
17/07/16 23:59:33 INFO Utils: Successfully started service 'sparkDriver' on port 51889.
17/07/16 23:59:33 INFO SparkEnv: Registering MapOutputTracker
17/07/16 23:59:33 INFO SparkEnv: Registering BlockManagerMaster
17/07/16 23:59:33 INFO BlockManagerMasterEndpoint: Using org.apache.spark.storage.DefaultTopologyMapper for getting topology information
17/07/16 23:59:33 INFO BlockManagerMasterEndpoint: BlockManagerMasterEndpoint up
17/07/16 23:59:33 INFO DiskBlockManager: Created local directory at /private/var/folders/k2/04p4k4ws73l6711h_mz2_tq00000gn/T/blockmgr-9cfae28a-01e9-4c73-a1f1-f76fa52fc7a5
17/07/16 23:59:33 INFO MemoryStore: MemoryStore started with capacity 366.3 MB
17/07/16 23:59:33 INFO SparkEnv: Registering OutputCommitCoordinator
17/07/16 23:59:33 INFO Utils: Successfully started service 'SparkUI' on port 4040.
17/07/16 23:59:33 INFO SparkUI: Bound SparkUI to 0.0.0.0, and started at http://10.0.0.8:4040
17/07/16 23:59:33 INFO Executor: Starting executor ID driver on host localhost
17/07/16 23:59:33 INFO Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 51890.
17/07/16 23:59:33 INFO NettyBlockTransferService: Server created on 10.0.0.8:51890
17/07/16 23:59:33 INFO BlockManager: Using org.apache.spark.storage.RandomBlockReplicationPolicy for block replication policy
17/07/16 23:59:33 INFO BlockManagerMaster: Registering BlockManager BlockManagerId(driver, 10.0.0.8, 51890, None)
17/07/16 23:59:33 INFO BlockManagerMasterEndpoint: Registering block manager 10.0.0.8:51890 with 366.3 MB RAM, BlockManagerId(driver, 10.0.0.8, 51890, None)
17/07/16 23:59:33 INFO BlockManagerMaster: Registered BlockManager BlockManagerId(driver, 10.0.0.8, 51890, None)
17/07/16 23:59:33 INFO BlockManager: Initialized BlockManager: BlockManagerId(driver, 10.0.0.8, 51890, None)
17/07/16 23:59:34 INFO SharedState: Setting hive.metastore.warehouse.dir ('null') to the value of spark.sql.warehouse.dir ('file:/Users/Kent/Documents/spark/spark-warehouse').
17/07/16 23:59:34 INFO SharedState: Warehouse path is 'file:/Users/Kent/Documents/spark/spark-warehouse'.
17/07/16 23:59:34 INFO HiveUtils: Initializing HiveMetastoreConnection version 1.2.1 using Spark classes.
17/07/16 23:59:34 INFO HiveClientImpl: Warehouse location for Hive client (version 1.2.2) is /user/hive/warehouse
17/07/16 23:59:34 INFO HiveMetaStore: 0: get_database: default
17/07/16 23:59:34 INFO audit: ugi=Kent	ip=unknown-ip-addr	cmd=get_database: default
17/07/16 23:59:34 INFO HiveClientImpl: Warehouse location for Hive client (version 1.2.2) is /user/hive/warehouse
17/07/16 23:59:34 INFO HiveMetaStore: 0: get_database: global_temp
17/07/16 23:59:34 INFO audit: ugi=Kent	ip=unknown-ip-addr	cmd=get_database: global_temp
17/07/16 23:59:34 WARN ObjectStore: Failed to get database global_temp, returning NoSuchObjectException
17/07/16 23:59:34 INFO HiveClientImpl: Warehouse location for Hive client (version 1.2.2) is /user/hive/warehouse
17/07/16 23:59:34 INFO StateStoreCoordinatorRef: Registered StateStoreCoordinator endpoint
spark-sql>

```
cc cloud-fan gatorsmile

Author: Kent Yao <yaooqinn@hotmail.com>
Author: hzyaoqin <hzyaoqin@corp.netease.com>

Closes #18648 from yaooqinn/SPARK-21428.
2017-08-18 00:24:45 +08:00
Hideaki Tanaka d695a528be [SPARK-21642][CORE] Use FQDN for DRIVER_HOST_ADDRESS instead of ip address
## What changes were proposed in this pull request?

The patch lets spark web ui use FQDN as its hostname instead of ip address.

In current implementation, ip address of a driver host is set to DRIVER_HOST_ADDRESS. This becomes a problem when we enable SSL using "spark.ssl.enabled", "spark.ssl.trustStore" and "spark.ssl.keyStore" properties. When we configure these properties, spark web ui is launched with SSL enabled and the HTTPS server is configured with the custom SSL certificate you configured in these properties.
In this case, client gets javax.net.ssl.SSLPeerUnverifiedException exception when the client accesses the spark web ui because the client fails to verify the SSL certificate (Common Name of the SSL cert does not match with DRIVER_HOST_ADDRESS).

To avoid the exception, we should use FQDN of the driver host for DRIVER_HOST_ADDRESS.

Error message that client gets when the client accesses spark web ui:
javax.net.ssl.SSLPeerUnverifiedException: Certificate for <10.102.138.239> doesn't match any of the subject alternative names: []

## How was this patch tested?
manual tests

Author: Hideaki Tanaka <tanakah@amazon.com>

Closes #18846 from thideeeee/SPARK-21642.
2017-08-17 22:02:13 +08:00
Eyal Farago b8ffb51055 [SPARK-3151][BLOCK MANAGER] DiskStore.getBytes fails for files larger than 2GB
## What changes were proposed in this pull request?
introduced `DiskBlockData`, a new implementation of `BlockData` representing a whole file.
this is somehow related to [SPARK-6236](https://issues.apache.org/jira/browse/SPARK-6236) as well

This class follows the implementation of `EncryptedBlockData` just without the encryption. hence:
* `toInputStream` is implemented using a `FileInputStream` (todo: encrypted version actually uses `Channels.newInputStream`, not sure if it's the right choice for this)
* `toNetty` is implemented in terms of `io.netty.channel.DefaultFileRegion`
* `toByteBuffer` fails for files larger than 2GB (same behavior of the original code, just postponed a bit), it also respects the same configuration keys defined by the original code to choose between memory mapping and simple file read.

## How was this patch tested?
added test to DiskStoreSuite and MemoryManagerSuite

Author: Eyal Farago <eyal@nrgene.com>

Closes #18855 from eyalfa/SPARK-3151.
2017-08-17 09:21:50 +08:00
John Lee adf005dabe [SPARK-21656][CORE] spark dynamic allocation should not idle timeout executors when tasks still to run
## What changes were proposed in this pull request?

Right now spark lets go of executors when they are idle for the 60s (or configurable time). I have seen spark let them go when they are idle but they were really needed. I have seen this issue when the scheduler was waiting to get node locality but that takes longer than the default idle timeout. In these jobs the number of executors goes down really small (less than 10) but there are still like 80,000 tasks to run.
We should consider not allowing executors to idle timeout if they are still needed according to the number of tasks to be run.

## How was this patch tested?

Tested by manually adding executors to `executorsIdsToBeRemoved` list and seeing if those executors were removed when there are a lot of tasks and a high `numExecutorsTarget` value.

Code used

In  `ExecutorAllocationManager.start()`

```
    start_time = clock.getTimeMillis()
```

In `ExecutorAllocationManager.schedule()`
```
    val executorIdsToBeRemoved = ArrayBuffer[String]()
    if ( now > start_time + 1000 * 60 * 2) {
      logInfo("--- REMOVING 1/2 of the EXECUTORS ---")
      start_time +=  1000 * 60 * 100
      var counter = 0
      for (x <- executorIds) {
        counter += 1
        if (counter == 2) {
          counter = 0
          executorIdsToBeRemoved += x
        }
      }
    }

Author: John Lee <jlee2@yahoo-inc.com>

Closes #18874 from yoonlee95/SPARK-21656.
2017-08-16 09:44:09 -05:00
Marcelo Vanzin 3f958a9992 [SPARK-21731][BUILD] Upgrade scalastyle to 0.9.
This version fixes a few issues in the import order checker; it provides
better error messages, and detects more improper ordering (thus the need
to change a lot of files in this patch). The main fix is that it correctly
complains about the order of packages vs. classes.

As part of the above, I moved some "SparkSession" import in ML examples
inside the "$example on$" blocks; that didn't seem consistent across
different source files to start with, and avoids having to add more on/off blocks
around specific imports.

The new scalastyle also seems to have a better header detector, so a few
license headers had to be updated to match the expected indentation.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #18943 from vanzin/SPARK-21731.
2017-08-15 13:59:00 -07:00
Marcelo Vanzin cba826d001 [SPARK-17742][CORE] Handle child process exit in SparkLauncher.
Currently the launcher handle does not monitor the child spark-submit
process it launches; this means that if the child exits with an error,
the handle's state will never change, and an application will not know
that the application has failed.

This change adds code to monitor the child process, and changes the
handle state appropriately when the child process exits.

Tested with added unit tests.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #18877 from vanzin/SPARK-17742.
2017-08-15 11:26:29 -07:00
Andrew Ash 6847e93cf4 [SPARK-21563][CORE] Fix race condition when serializing TaskDescriptions and adding jars
## What changes were proposed in this pull request?

Fix the race condition when serializing TaskDescriptions and adding jars by keeping the set of jars and files for a TaskSet constant across the lifetime of the TaskSet.  Otherwise TaskDescription serialization can produce an invalid serialization when new file/jars are added concurrently as the TaskDescription is serialized.

## How was this patch tested?

Additional unit test ensures jars/files contained in the TaskDescription remain constant throughout the lifetime of the TaskSet.

Author: Andrew Ash <andrew@andrewash.com>

Closes #18913 from ash211/SPARK-21563.
2017-08-14 22:48:08 +08:00
Anderson Osagie 34d2134a9f [SPARK-21176][WEB UI] Format worker page links to work with proxy
## What changes were proposed in this pull request?

Several links on the worker page do not work correctly with the proxy because:
1) They don't acknowledge the proxy
2) They use relative paths (unlike the Application Page which uses full paths)

This patch fixes that. It also fixes a mistake in the proxy's Location header parsing which caused it to incorrectly handle redirects.

## How was this patch tested?

I checked the validity of every link with the proxy on and off.

Author: Anderson Osagie <osagie@gmail.com>

Closes #18915 from aosagie/fix/proxy-links.
2017-08-14 10:00:59 +01:00
Stavros Kontopoulos da8c59bdea [SPARK-12559][SPARK SUBMIT] fix --packages for stand-alone cluster mode
Fixes --packages flag for the stand-alone case in cluster mode. Adds to the driver classpath the jars that are resolved via ivy along with any other jars passed to `spark.jars`. Jars not resolved by ivy are downloaded explicitly to a tmp folder on the driver node. Similar code is available in SparkSubmit so we refactored part of it to use it at the DriverWrapper class which is responsible for launching driver in standalone cluster mode.

Note: In stand-alone mode `spark.jars` contains the user jar so it can be fetched later on at the executor side.

Manually by submitting a driver in cluster mode within a standalone cluster and checking if dependencies were resolved at the driver side.

Author: Stavros Kontopoulos <st.kontopoulos@gmail.com>

Closes #18630 from skonto/fix_packages_stand_alone_cluster.
2017-08-11 15:52:32 -07:00
Kent Yao 2387f1e316 [SPARK-21675][WEBUI] Add a navigation bar at the bottom of the Details for Stage Page
## What changes were proposed in this pull request?

1. In Spark Web UI, the Details for Stage Page don't have a navigation bar at the bottom. When we drop down to the bottom, it is better for us to see a navi bar right there to go wherever we what.
2. Executor ID is not equivalent to Host, it may be  better to separate them, and then we can group the tasks by Hosts .

## How was this patch tested?
manually test
![wx20170809-165606](https://user-images.githubusercontent.com/8326978/29114161-f82b4920-7d25-11e7-8d0c-0c036b008a78.png)

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: Kent Yao <yaooqinn@hotmail.com>

Closes #18893 from yaooqinn/SPARK-21675.
2017-08-11 14:57:06 +01:00
peay c06f3f5ac5 [SPARK-21551][PYTHON] Increase timeout for PythonRDD.serveIterator
## What changes were proposed in this pull request?

This modification increases the timeout for `serveIterator` (which is not dynamically configurable). This fixes timeout issues in pyspark when using `collect` and similar functions, in cases where Python may take more than a couple seconds to connect.

See https://issues.apache.org/jira/browse/SPARK-21551

## How was this patch tested?

Ran the tests.

cc rxin

Author: peay <peay@protonmail.com>

Closes #18752 from peay/spark-21551.
2017-08-09 14:03:18 -07:00
Takeshi Yamamuro b78cf13bf0 [SPARK-21276][CORE] Update lz4-java to the latest (v1.4.0)
## What changes were proposed in this pull request?
This pr updated `lz4-java` to the latest (v1.4.0) and removed custom `LZ4BlockInputStream`. We currently use custom `LZ4BlockInputStream` to read concatenated byte stream in shuffle. But, this functionality has been implemented in the latest lz4-java (https://github.com/lz4/lz4-java/pull/105). So, we might update the latest to remove the custom `LZ4BlockInputStream`.

Major diffs between the latest release and v1.3.0 in the master are as follows (62f7547abb...6d4693f562);
- fixed NPE in XXHashFactory similarly
- Don't place resources in default package to support shading
- Fixes ByteBuffer methods failing to apply arrayOffset() for array-backed
- Try to load lz4-java from java.library.path, then fallback to bundled
- Add ppc64le binary
- Add s390x JNI binding
- Add basic LZ4 Frame v1.5.0 support
- enable aarch64 support for lz4-java
- Allow unsafeInstance() for ppc64le archiecture
- Add unsafeInstance support for AArch64
- Support 64-bit JNI build on Solaris
- Avoid over-allocating a buffer
- Allow EndMark to be incompressible for LZ4FrameInputStream.
- Concat byte stream

## How was this patch tested?
Existing tests.

Author: Takeshi Yamamuro <yamamuro@apache.org>

Closes #18883 from maropu/SPARK-21276.
2017-08-09 17:31:52 +02:00
vinodkc 83fe3b5e10 [SPARK-21665][CORE] Need to close resources after use
## What changes were proposed in this pull request?
Resources in Core - SparkSubmitArguments.scala, Spark-launcher - AbstractCommandBuilder.java, resource-managers- YARN - Client.scala are released

## How was this patch tested?
No new test cases added, Unit test have been passed

Author: vinodkc <vinod.kc.in@gmail.com>

Closes #18880 from vinodkc/br_fixresouceleak.
2017-08-09 15:18:38 +02:00
10087686 6426adffaf [SPARK-21663][TESTS] test("remote fetch below max RPC message size") should call masterTracker.stop() in MapOutputTrackerSuite
Signed-off-by: 10087686 <wang.jiaochunzte.com.cn>

## What changes were proposed in this pull request?
After Unit tests end,there should be call masterTracker.stop() to free resource;
(Please fill in changes proposed in this fix)

## How was this patch tested?
Run Unit tests;
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: 10087686 <wang.jiaochun@zte.com.cn>

Closes #18867 from wangjiaochun/mapout.
2017-08-09 18:45:38 +08:00
Anderson Osagie ae8a2b1496 [SPARK-21176][WEB UI] Use a single ProxyServlet to proxy all workers and applications
## What changes were proposed in this pull request?

Currently, each application and each worker creates their own proxy servlet. Each proxy servlet is backed by its own HTTP client and a relatively large number of selector threads. This is excessive but was fixed (to an extent) by https://github.com/apache/spark/pull/18437.

However, a single HTTP client (backed by a single selector thread) should be enough to handle all proxy requests. This PR creates a single proxy servlet no matter how many applications and workers there are.

## How was this patch tested?
.
The unit tests for rewriting proxied locations and headers were updated. I then spun up a 100 node cluster to ensure that proxy'ing worked correctly

jiangxb1987 Please let me know if there's anything else I can do to help push this thru. Thanks!

Author: Anderson Osagie <osagie@gmail.com>

Closes #18499 from aosagie/fix/minimize-proxy-threads.
2017-08-09 14:35:27 +08:00
pgandhi f016f5c8f6 [SPARK-21503][UI] Spark UI shows incorrect task status for a killed Executor Process
The executor tab on Spark UI page shows task as completed when an executor process that is running that task is killed using the kill command.
Added the case ExecutorLostFailure which was previously not there, thus, the default case would be executed in which case, task would be marked as completed. This case will consider all those cases where executor connection to Spark Driver was lost due to killing the executor process, network connection etc.

## How was this patch tested?
Manually Tested the fix by observing the UI change before and after.
Before:
<img width="1398" alt="screen shot-before" src="https://user-images.githubusercontent.com/22228190/28482929-571c9cea-6e30-11e7-93dd-728de5cdea95.png">
After:
<img width="1385" alt="screen shot-after" src="https://user-images.githubusercontent.com/22228190/28482964-8649f5ee-6e30-11e7-91bd-2eb2089c61cc.png">

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: pgandhi <pgandhi@yahoo-inc.com>
Author: pgandhi999 <parthkgandhi9@gmail.com>

Closes #18707 from pgandhi999/master.
2017-08-09 13:46:06 +08:00
Xianyang Liu 534a063f7c [SPARK-21621][CORE] Reset numRecordsWritten after DiskBlockObjectWriter.commitAndGet called
## What changes were proposed in this pull request?

We should reset numRecordsWritten to zero after DiskBlockObjectWriter.commitAndGet called.
Because when `revertPartialWritesAndClose` be called, we decrease the written records in `ShuffleWriteMetrics` . However, we decreased the written records to zero, this should be wrong, we should only decreased the number reords after the last `commitAndGet` called.

## How was this patch tested?
Modified existing test.

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: Xianyang Liu <xianyang.liu@intel.com>

Closes #18830 from ConeyLiu/DiskBlockObjectWriter.
2017-08-07 17:04:53 +08:00
hzyaoqin 41568e9a0f [SPARK-21637][SPARK-21451][SQL] get spark.hadoop.* properties from sysProps to hiveconf
## What changes were proposed in this pull request?
When we use `bin/spark-sql` command configuring `--conf spark.hadoop.foo=bar`, the `SparkSQLCliDriver` initializes an instance of  hiveconf, it does not add `foo->bar` to it.
this pr gets `spark.hadoop.*` properties from sysProps to this hiveconf

## How was this patch tested?
UT

Author: hzyaoqin <hzyaoqin@corp.netease.com>
Author: Kent Yao <yaooqinn@hotmail.com>

Closes #18668 from yaooqinn/SPARK-21451.
2017-08-05 17:30:47 -07:00
Shixiong Zhu 6cbd18c9d0 [SPARK-21374][CORE] Fix reading globbed paths from S3 into DF with disabled FS cache
## What changes were proposed in this pull request?

This PR replaces #18623 to do some clean up.

Closes #18623

## How was this patch tested?

Jenkins

Author: Shixiong Zhu <shixiong@databricks.com>
Author: Andrey Taptunov <taptunov@amazon.com>

Closes #18848 from zsxwing/review-pr18623.
2017-08-04 22:40:04 -07:00