## What changes were proposed in this pull request?
In TestHive, the base spark session does this in getOrCreate(), we emulate that behavior for tests.
## How was this patch tested?
N/A
Author: gatorsmile <gatorsmile@gmail.com>
Closes#20969 from gatorsmile/setDefault.
## What changes were proposed in this pull request?
Currently, the active spark session is set inconsistently (e.g., in createDataFrame, prior to query execution). Many places in spark also incorrectly query active session when they should be calling activeSession.getOrElse(defaultSession) and so might get None even if a Spark session exists.
The semantics here can be cleaned up if we also set the active session when the default session is set.
Related: https://github.com/apache/spark/pull/20926/files
## How was this patch tested?
Unit test, existing test. Note that if https://github.com/apache/spark/pull/20926 merges first we should also update the tests there.
Author: Eric Liang <ekl@databricks.com>
Closes#20927 from ericl/active-session-cleanup.
## What changes were proposed in this pull request?
isSharedClass returns if some classes can/should be shared or not. It checks if the classes names have some keywords or start with some names. Following the logic, it can occur unintended behaviors when a custom package has `slf4j` inside the package or class name. As I guess, the first intention seems to figure out the class containing `org.slf4j`. It would be better to change the comparison logic to `name.startsWith("org.slf4j")`
## How was this patch tested?
This patch should pass all of the current tests and keep all of the current behaviors. In my case, I'm using ProtobufDeserializer to get a table schema from hive tables. Thus some Protobuf packages and names have `slf4j` inside. Without this patch, it cannot be resolved because of ClassCastException from different classloaders.
Author: Jongyoul Lee <jongyoul@gmail.com>
Closes#20860 from jongyoul/SPARK-23743.
## What changes were proposed in this pull request?
Set default Spark session in the TestSparkSession and TestHiveSparkSession constructors.
## How was this patch tested?
new unit tests
Author: Jose Torres <torres.joseph.f+github@gmail.com>
Closes#20926 from jose-torres/test3.
## What changes were proposed in this pull request?
Currently, some tests have an assumption that `spark.sql.sources.default=parquet`. In fact, that is a correct assumption, but that assumption makes it difficult to test new data source format.
This PR aims to
- Improve test suites more robust and makes it easy to test new data sources in the future.
- Test new native ORC data source with the full existing Apache Spark test coverage.
As an example, the PR uses `spark.sql.sources.default=orc` during reviews. The value should be `parquet` when this PR is accepted.
## How was this patch tested?
Pass the Jenkins with updated tests.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#20705 from dongjoon-hyun/SPARK-23553.
## What changes were proposed in this pull request?
This PR fixes a minor issue in `HadoopFsRelationTest`, that you should create table using `dataSourceName` instead of `parquet`. The issue won't affect the correctness, but it will generate wrong error message in case the test fails.
## How was this patch tested?
Exsiting tests.
Author: Xingbo Jiang <xingbo.jiang@databricks.com>
Closes#20780 from jiangxb1987/dataSourceName.
A few different things going on:
- Remove unused methods.
- Move JSON methods to the only class that uses them.
- Move test-only methods to TestUtils.
- Make getMaxResultSize() a config constant.
- Reuse functionality from existing libraries (JRE or JavaUtils) where possible.
The change also includes changes to a few tests to call `Utils.createTempFile` correctly,
so that temp dirs are created under the designated top-level temp dir instead of
potentially polluting git index.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#20706 from vanzin/SPARK-23550.
## What changes were proposed in this pull request?
Add Spark 2.3.0 in HiveExternalCatalogVersionsSuite since Spark 2.3.0 is released for ensuring backward compatibility.
## How was this patch tested?
N/A
Author: gatorsmile <gatorsmile@gmail.com>
Closes#20720 from gatorsmile/add2.3.
## What changes were proposed in this pull request?
https://github.com/apache/spark/pull/18944 added one patch, which allowed a spark session to be created when the hive metastore server is down. However, it did not allow running any commands with the spark session. This brings troubles to the user who only wants to read / write data frames without metastore setup.
## How was this patch tested?
Added some unit tests to read and write data frames based on the original HiveMetastoreLazyInitializationSuite.
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: Feng Liu <fengliu@databricks.com>
Closes#20681 from liufengdb/completely-lazy.
## What changes were proposed in this pull request?
This is based on https://github.com/apache/spark/pull/20668 for supporting Hive 2.2 and Hive 2.3 metastore.
When we merge the PR, we should give the major credit to wangyum
## How was this patch tested?
Added the test cases
Author: Yuming Wang <yumwang@ebay.com>
Author: gatorsmile <gatorsmile@gmail.com>
Closes#20671 from gatorsmile/pr-20668.
## What changes were proposed in this pull request?
A few places in `spark-sql` were using `sc.hadoopConfiguration` directly. They should be using `sessionState.newHadoopConf()` to blend in configs that were set through `SQLConf`.
Also, for better UX, for these configs blended in from `SQLConf`, we should consider removing the `spark.hadoop` prefix, so that the settings are recognized whether or not they were specified by the user.
## How was this patch tested?
Tested that AlterTableRecoverPartitions now correctly recognizes settings that are passed in to the FileSystem through SQLConf.
Author: Juliusz Sompolski <julek@databricks.com>
Closes#20679 from juliuszsompolski/SPARK-23514.
## What changes were proposed in this pull request?
Refactor ColumnStat to be more flexible.
* Split `ColumnStat` and `CatalogColumnStat` just like `CatalogStatistics` is split from `Statistics`. This detaches how the statistics are stored from how they are processed in the query plan. `CatalogColumnStat` keeps `min` and `max` as `String`, making it not depend on dataType information.
* For `CatalogColumnStat`, parse column names from property names in the metastore (`KEY_VERSION` property), not from metastore schema. This means that `CatalogColumnStat`s can be created for columns even if the schema itself is not stored in the metastore.
* Make all fields optional. `min`, `max` and `histogram` for columns were optional already. Having them all optional is more consistent, and gives flexibility to e.g. drop some of the fields through transformations if they are difficult / impossible to calculate.
The added flexibility will make it possible to have alternative implementations for stats, and separates stats collection from stats and estimation processing in plans.
## How was this patch tested?
Refactored existing tests to work with refactored `ColumnStat` and `CatalogColumnStat`.
New tests added in `StatisticsSuite` checking that backwards / forwards compatibility is not broken.
Author: Juliusz Sompolski <julek@databricks.com>
Closes#20624 from juliuszsompolski/SPARK-23445.
## What changes were proposed in this pull request?
This PR updates Apache ORC dependencies to 1.4.3 released on February 9th. Apache ORC 1.4.2 release removes unnecessary dependencies and 1.4.3 has 5 more patches (https://s.apache.org/Fll8).
Especially, the following ORC-285 is fixed at 1.4.3.
```scala
scala> val df = Seq(Array.empty[Float]).toDF()
scala> df.write.format("orc").save("/tmp/floatarray")
scala> spark.read.orc("/tmp/floatarray")
res1: org.apache.spark.sql.DataFrame = [value: array<float>]
scala> spark.read.orc("/tmp/floatarray").show()
18/02/12 22:09:10 ERROR Executor: Exception in task 0.0 in stage 1.0 (TID 1)
java.io.IOException: Error reading file: file:/tmp/floatarray/part-00000-9c0b461b-4df1-4c23-aac1-3e4f349ac7d6-c000.snappy.orc
at org.apache.orc.impl.RecordReaderImpl.nextBatch(RecordReaderImpl.java:1191)
at org.apache.orc.mapreduce.OrcMapreduceRecordReader.ensureBatch(OrcMapreduceRecordReader.java:78)
...
Caused by: java.io.EOFException: Read past EOF for compressed stream Stream for column 2 kind DATA position: 0 length: 0 range: 0 offset: 0 limit: 0
```
## How was this patch tested?
Pass the Jenkins test.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#20511 from dongjoon-hyun/SPARK-23340.
## What changes were proposed in this pull request?
This replaces `Sparkcurrently` to `Spark currently` in the following error message.
```scala
scala> sql("insert into t2 select * from v1")
org.apache.spark.sql.AnalysisException: Output Hive table `default`.`t2`
is bucketed but Sparkcurrently does NOT populate bucketed ...
```
## How was this patch tested?
Manual.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#20617 from dongjoon-hyun/SPARK-ERROR-MSG.
## What changes were proposed in this pull request?
This PR is to revert the PR https://github.com/apache/spark/pull/20302, because it causes a regression.
## How was this patch tested?
N/A
Author: gatorsmile <gatorsmile@gmail.com>
Closes#20614 from gatorsmile/revertJsonFix.
## What changes were proposed in this pull request?
https://github.com/apache/spark/pull/19579 introduces a behavior change. We need to document it in the migration guide.
## How was this patch tested?
Also update the HiveExternalCatalogVersionsSuite to verify it.
Author: gatorsmile <gatorsmile@gmail.com>
Closes#20606 from gatorsmile/addMigrationGuide.
## What changes were proposed in this pull request?
If the target database name is as same as the current database, we should be able to skip one metastore access.
## How was this patch tested?
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: Feng Liu <fengliu@databricks.com>
Closes#20565 from liufengdb/remove-redundant.
When hive.default.fileformat is other kinds of file types, create textfile table cause a serde error.
We should take the default type of textfile and sequencefile both as org.apache.hadoop.hive.serde2.lazy.LazySimpleSerDe.
```
set hive.default.fileformat=orc;
create table tbl( i string ) stored as textfile;
desc formatted tbl;
Serde Library org.apache.hadoop.hive.ql.io.orc.OrcSerde
InputFormat org.apache.hadoop.mapred.TextInputFormat
OutputFormat org.apache.hadoop.hive.ql.io.HiveIgnoreKeyTextOutputFormat
```
Author: sychen <sychen@ctrip.com>
Closes#20406 from cxzl25/default_serde.
## What changes were proposed in this pull request?
This removes the special case that `alterPartitions` call from `HiveExternalCatalog` can reset the current database in the hive client as a side effect.
## How was this patch tested?
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: Feng Liu <fengliu@databricks.com>
Closes#20564 from liufengdb/move.
## What changes were proposed in this pull request?
This is a regression in Spark 2.3.
In Spark 2.2, we have a fragile UI support for SQL data writing commands. We only track the input query plan of `FileFormatWriter` and display its metrics. This is not ideal because we don't know who triggered the writing(can be table insertion, CTAS, etc.), but it's still useful to see the metrics of the input query.
In Spark 2.3, we introduced a new mechanism: `DataWritigCommand`, to fix the UI issue entirely. Now these writing commands have real children, and we don't need to hack into the `FileFormatWriter` for the UI. This also helps with `explain`, now `explain` can show the physical plan of the input query, while in 2.2 the physical writing plan is simply `ExecutedCommandExec` and it has no child.
However there is a regression in CTAS. CTAS commands don't extend `DataWritigCommand`, and we don't have the UI hack in `FileFormatWriter` anymore, so the UI for CTAS is just an empty node. See https://issues.apache.org/jira/browse/SPARK-22977 for more information about this UI issue.
To fix it, we should apply the `DataWritigCommand` mechanism to CTAS commands.
TODO: In the future, we should refactor this part and create some physical layer code pieces for data writing, and reuse them in different writing commands. We should have different logical nodes for different operators, even some of them share some same logic, e.g. CTAS, CREATE TABLE, INSERT TABLE. Internally we can share the same physical logic.
## How was this patch tested?
manually tested.
For data source table
<img width="644" alt="1" src="https://user-images.githubusercontent.com/3182036/35874155-bdffab28-0ba6-11e8-94a8-e32e106ba069.png">
For hive table
<img width="666" alt="2" src="https://user-images.githubusercontent.com/3182036/35874161-c437e2a8-0ba6-11e8-98ed-7930f01432c5.png">
Author: Wenchen Fan <wenchen@databricks.com>
Closes#20521 from cloud-fan/UI.
## What changes were proposed in this pull request?
Currently, we use SBT and MAVN to spark unit test, are affected by the parameters of `spark.testing`. However, when using the IDE test tool, `spark.testing` support is not very good, sometimes need to be manually added to the beforeEach. example: HiveSparkSubmitSuite RPackageUtilsSuite SparkSubmitSuite. The PR unified `spark.testing` parameter extraction to SparkFunSuite, support IDE test tool, and the test code is more compact.
## How was this patch tested?
the existed test cases.
Author: caoxuewen <cao.xuewen@zte.com.cn>
Closes#20582 from heary-cao/sparktesting.
## What changes were proposed in this pull request?
This is a follow up of https://github.com/apache/spark/pull/20441.
The two lines actually can trigger the hive metastore bug: https://issues.apache.org/jira/browse/HIVE-16844
The two configs are not in the default `ObjectStore` properties, so any run hive commands after these two lines will set the `propsChanged` flag in the `ObjectStore.setConf` and then cause thread leaks.
I don't think the two lines are very useful. They can be removed safely.
## How was this patch tested?
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: Feng Liu <fengliu@databricks.com>
Closes#20562 from liufengdb/fix-omm.
## What changes were proposed in this pull request?
Typo fixes (with expanding a Hive property)
## How was this patch tested?
local build. Awaiting Jenkins
Author: Jacek Laskowski <jacek@japila.pl>
Closes#20550 from jaceklaskowski/hiveutils-typos.
## What changes were proposed in this pull request?
This is to revert the changes made in https://github.com/apache/spark/pull/19499 , because this causes a regression. We should not ignore the table-specific compression conf when the Hive serde tables are converted to the data source tables.
## How was this patch tested?
The existing tests.
Author: gatorsmile <gatorsmile@gmail.com>
Closes#20536 from gatorsmile/revert22279.
## What changes were proposed in this pull request?
SpecifiedWindowFrame.defaultWindowFrame(hasOrderSpecification, acceptWindowFrame) was designed to handle the cases when some Window functions don't support setting a window frame (e.g. rank). However this param is never used.
We may inline the whole of this function to simplify the code.
## How was this patch tested?
Existing tests.
Author: Xingbo Jiang <xingbo.jiang@databricks.com>
Closes#20463 from jiangxb1987/defaultWindowFrame.
Signed-off-by: Atallah Hezbor <atallahhezborgmail.com>
## What changes were proposed in this pull request?
This PR proposes modifying the match statement that gets the columns of a row in HiveThriftServer. There was previously no case for `UserDefinedType`, so querying a table that contained them would throw a match error. The changes catch that case and return the string representation.
## How was this patch tested?
While I would have liked to add a unit test, I couldn't easily incorporate UDTs into the ``HiveThriftServer2Suites`` pipeline. With some guidance I would be happy to push a commit with tests.
Instead I did a manual test by loading a `DataFrame` with Point UDT in a spark shell with a HiveThriftServer. Then in beeline, connecting to the server and querying that table.
Here is the result before the change
```
0: jdbc:hive2://localhost:10000> select * from chicago;
Error: scala.MatchError: org.apache.spark.sql.PointUDT2d980dc3 (of class org.apache.spark.sql.PointUDT) (state=,code=0)
```
And after the change:
```
0: jdbc:hive2://localhost:10000> select * from chicago;
+---------------------------------------+--------------+------------------------+---------------------+--+
| __fid__ | case_number | dtg | geom |
+---------------------------------------+--------------+------------------------+---------------------+--+
| 109602f9-54f8-414b-8c6f-42b1a337643e | 2 | 2016-01-01 19:00:00.0 | POINT (-77 38) |
| 709602f9-fcff-4429-8027-55649b6fd7ed | 1 | 2015-12-31 19:00:00.0 | POINT (-76.5 38.5) |
| 009602f9-fcb5-45b1-a867-eb8ba10cab40 | 3 | 2016-01-02 19:00:00.0 | POINT (-78 39) |
+---------------------------------------+--------------+------------------------+---------------------+--+
```
Author: Atallah Hezbor <atallahhezbor@gmail.com>
Closes#20385 from atallahhezbor/udts_over_hive.
## What changes were proposed in this pull request?
Like Parquet, ORC test suites should enable UDT tests.
## How was this patch tested?
Pass the Jenkins with newly enabled test cases.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#20440 from dongjoon-hyun/SPARK-23276.
## What changes were proposed in this pull request?
hive tests have been failing when they are run locally (Mac Os) after a recent change in the trunk. After running the tests for some time, the test fails with OOM with Error: unable to create new native thread.
I noticed the thread count goes all the way up to 2000+ after which we start getting these OOM errors. Most of the threads seem to be related to the connection pool in hive metastore (BoneCP-xxxxx-xxxx ). This behaviour change is happening after we made the following change to HiveClientImpl.reset()
``` SQL
def reset(): Unit = withHiveState {
try {
// code
} finally {
runSqlHive("USE default") ===> this is causing the issue
}
```
I am proposing to temporarily back-out part of a fix made to address SPARK-23000 to resolve this issue while we work-out the exact reason for this sudden increase in thread counts.
## How was this patch tested?
Ran hive/test multiple times in different machines.
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: Dilip Biswal <dbiswal@us.ibm.com>
Closes#20441 from dilipbiswal/hive_tests.
## What changes were proposed in this pull request?
It is a common pattern to apply multiple transforms to a `Dataset` (using `Dataset.withColumn` for example. This is currently quite expensive because we run `CheckAnalysis` on the full plan and create an encoder for each intermediate `Dataset`.
This PR extends the usage of the `AnalysisBarrier` to include `CheckAnalysis`. By doing this we hide the already analyzed plan from `CheckAnalysis` because barrier is a `LeafNode`. The `AnalysisBarrier` is in the `FinishAnalysis` phase of the optimizer.
We also make binding the `Dataset` encoder lazy. The bound encoder is only needed when we materialize the dataset.
## How was this patch tested?
Existing test should cover this.
Author: Herman van Hovell <hvanhovell@databricks.com>
Closes#20402 from hvanhovell/SPARK-23223.
## What changes were proposed in this pull request?
Correct some improper with view related method usage
Only change test cases
like:
```
test("list global temp views") {
try {
sql("CREATE GLOBAL TEMP VIEW v1 AS SELECT 3, 4")
sql("CREATE TEMP VIEW v2 AS SELECT 1, 2")
checkAnswer(sql(s"SHOW TABLES IN $globalTempDB"),
Row(globalTempDB, "v1", true) ::
Row("", "v2", true) :: Nil)
assert(spark.catalog.listTables(globalTempDB).collect().toSeq.map(_.name) == Seq("v1", "v2"))
} finally {
spark.catalog.dropTempView("v1")
spark.catalog.dropGlobalTempView("v2")
}
}
```
other change please review the code.
## How was this patch tested?
See test case.
Author: xubo245 <601450868@qq.com>
Closes#20250 from xubo245/DropTempViewError.
## What changes were proposed in this pull request?
**Proposal**
Add a per-query ID to the codegen stages as represented by `WholeStageCodegenExec` operators. This ID will be used in
- the explain output of the physical plan, and in
- the generated class name.
Specifically, this ID will be stable within a query, counting up from 1 in depth-first post-order for all the `WholeStageCodegenExec` inserted into a plan.
The ID value 0 is reserved for "free-floating" `WholeStageCodegenExec` objects, which may have been created for one-off purposes, e.g. for fallback handling of codegen stages that failed to codegen the whole stage and wishes to codegen a subset of the children operators (as seen in `org.apache.spark.sql.execution.FileSourceScanExec#doExecute`).
Example: for the following query:
```scala
scala> spark.conf.set("spark.sql.autoBroadcastJoinThreshold", 1)
scala> val df1 = spark.range(10).select('id as 'x, 'id + 1 as 'y).orderBy('x).select('x + 1 as 'z, 'y)
df1: org.apache.spark.sql.DataFrame = [z: bigint, y: bigint]
scala> val df2 = spark.range(5)
df2: org.apache.spark.sql.Dataset[Long] = [id: bigint]
scala> val query = df1.join(df2, 'z === 'id)
query: org.apache.spark.sql.DataFrame = [z: bigint, y: bigint ... 1 more field]
```
The explain output before the change is:
```scala
scala> query.explain
== Physical Plan ==
*SortMergeJoin [z#9L], [id#13L], Inner
:- *Sort [z#9L ASC NULLS FIRST], false, 0
: +- Exchange hashpartitioning(z#9L, 200)
: +- *Project [(x#3L + 1) AS z#9L, y#4L]
: +- *Sort [x#3L ASC NULLS FIRST], true, 0
: +- Exchange rangepartitioning(x#3L ASC NULLS FIRST, 200)
: +- *Project [id#0L AS x#3L, (id#0L + 1) AS y#4L]
: +- *Range (0, 10, step=1, splits=8)
+- *Sort [id#13L ASC NULLS FIRST], false, 0
+- Exchange hashpartitioning(id#13L, 200)
+- *Range (0, 5, step=1, splits=8)
```
Note how codegen'd operators are annotated with a prefix `"*"`. See how the `SortMergeJoin` operator and its direct children `Sort` operators are adjacent and all annotated with the `"*"`, so it's hard to tell they're actually in separate codegen stages.
and after this change it'll be:
```scala
scala> query.explain
== Physical Plan ==
*(6) SortMergeJoin [z#9L], [id#13L], Inner
:- *(3) Sort [z#9L ASC NULLS FIRST], false, 0
: +- Exchange hashpartitioning(z#9L, 200)
: +- *(2) Project [(x#3L + 1) AS z#9L, y#4L]
: +- *(2) Sort [x#3L ASC NULLS FIRST], true, 0
: +- Exchange rangepartitioning(x#3L ASC NULLS FIRST, 200)
: +- *(1) Project [id#0L AS x#3L, (id#0L + 1) AS y#4L]
: +- *(1) Range (0, 10, step=1, splits=8)
+- *(5) Sort [id#13L ASC NULLS FIRST], false, 0
+- Exchange hashpartitioning(id#13L, 200)
+- *(4) Range (0, 5, step=1, splits=8)
```
Note that the annotated prefix becomes `"*(id) "`. See how the `SortMergeJoin` operator and its direct children `Sort` operators have different codegen stage IDs.
It'll also show up in the name of the generated class, as a suffix in the format of `GeneratedClass$GeneratedIterator$id`.
For example, note how `GeneratedClass$GeneratedIteratorForCodegenStage3` and `GeneratedClass$GeneratedIteratorForCodegenStage6` in the following stack trace corresponds to the IDs shown in the explain output above:
```
"Executor task launch worker for task 42412957" daemon prio=5 tid=0x58 nid=NA runnable
java.lang.Thread.State: RUNNABLE
at org.apache.spark.sql.execution.UnsafeExternalRowSorter.insertRow(UnsafeExternalRowSorter.java:109)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage3.sort_addToSorter$(generated.java:32)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage3.processNext(generated.java:41)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$9$$anon$1.hasNext(WholeStageCodegenExec.scala:494)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage6.findNextInnerJoinRows$(generated.java:42)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage6.processNext(generated.java:101)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$11$$anon$2.hasNext(WholeStageCodegenExec.scala:513)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:253)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:247)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$25.apply(RDD.scala:828)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$25.apply(RDD.scala:828)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
at org.apache.spark.scheduler.Task.run(Task.scala:109)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
```
**Rationale**
Right now, the codegen from Spark SQL lacks the means to differentiate between a couple of things:
1. It's hard to tell which physical operators are in the same WholeStageCodegen stage. Note that this "stage" is a separate notion from Spark's RDD execution stages; this one is only to delineate codegen units.
There can be adjacent physical operators that are both codegen'd but are in separate codegen stages. Some of this is due to hacky implementation details, such as the case with `SortMergeJoin` and its `Sort` inputs -- they're hard coded to be split into separate stages although both are codegen'd.
When printing out the explain output of the physical plan, you'd only see the codegen'd physical operators annotated with a preceding star (`'*'`) but would have no way to figure out if they're in the same stage.
2. Performance/error diagnosis
The generated code has class/method names that are hard to differentiate between queries or even between codegen stages within the same query. If we use a Java-level profiler to collect profiles, or if we encounter a Java-level exception with a stack trace in it, it's really hard to tell which part of a query it's at.
By introducing a per-query codegen stage ID, we'd at least be able to know which codegen stage (and in turn, which group of physical operators) was a profile tick or an exception happened.
The reason why this proposal uses a per-query ID is because it's stable within a query, so that multiple runs of the same query will see the same resulting IDs. This both benefits understandability for users, and also it plays well with the codegen cache in Spark SQL which uses the generated source code as the key.
The downside to using per-query IDs as opposed to a per-session or globally incrementing ID is of course we can't tell apart different query runs with this ID alone. But for now I believe this is a good enough tradeoff.
## How was this patch tested?
Existing tests. This PR does not involve any runtime behavior changes other than some name changes.
The SQL query test suites that compares explain outputs have been updates to ignore the newly added `codegenStageId`.
Author: Kris Mok <kris.mok@databricks.com>
Closes#20224 from rednaxelafx/wsc-codegenstageid.
Because the call to the constructor of HiveClientImpl crosses class loader
boundaries, different versions of the same class (Configuration in this
case) were loaded, and that caused a runtime error when instantiating the
client. By using a safer type in the signature of the constructor, it's
possible to avoid the problem.
I considered removing 'sharesHadoopClasses', but it may still be desired
(even though there are 0 users of it since it was not working). When Spark
starts to support Hadoop 3, it may be necessary to use that option to
load clients for older Hive metastore versions that don't know about
Hadoop 3.
Tested with added unit test.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#20169 from vanzin/SPARK-17088.
## What changes were proposed in this pull request?
Typo fixes
## How was this patch tested?
Local build / Doc-only changes
Author: Jacek Laskowski <jacek@japila.pl>
Closes#20344 from jaceklaskowski/typo-fixes.
## What changes were proposed in this pull request?
Revert the unneeded test case changes we made in SPARK-23000
Also fixes the test suites that do not call `super.afterAll()` in the local `afterAll`. The `afterAll()` of `TestHiveSingleton` actually reset the environments.
## How was this patch tested?
N/A
Author: gatorsmile <gatorsmile@gmail.com>
Closes#20341 from gatorsmile/testRelated.
[SPARK-21786][SQL] The 'spark.sql.parquet.compression.codec' and 'spark.sql.orc.compression.codec' configuration doesn't take effect on hive table writing
What changes were proposed in this pull request?
Pass ‘spark.sql.parquet.compression.codec’ value to ‘parquet.compression’.
Pass ‘spark.sql.orc.compression.codec’ value to ‘orc.compress’.
How was this patch tested?
Add test.
Note:
This is the same issue mentioned in #19218 . That branch was deleted mistakenly, so make a new pr instead.
gatorsmile maropu dongjoon-hyun discipleforteen
Author: fjh100456 <fu.jinhua6@zte.com.cn>
Author: Takeshi Yamamuro <yamamuro@apache.org>
Author: Wenchen Fan <wenchen@databricks.com>
Author: gatorsmile <gatorsmile@gmail.com>
Author: Yinan Li <liyinan926@gmail.com>
Author: Marcelo Vanzin <vanzin@cloudera.com>
Author: Juliusz Sompolski <julek@databricks.com>
Author: Felix Cheung <felixcheung_m@hotmail.com>
Author: jerryshao <sshao@hortonworks.com>
Author: Li Jin <ice.xelloss@gmail.com>
Author: Gera Shegalov <gera@apache.org>
Author: chetkhatri <ckhatrimanjal@gmail.com>
Author: Joseph K. Bradley <joseph@databricks.com>
Author: Bago Amirbekian <bago@databricks.com>
Author: Xianjin YE <advancedxy@gmail.com>
Author: Bruce Robbins <bersprockets@gmail.com>
Author: zuotingbing <zuo.tingbing9@zte.com.cn>
Author: Kent Yao <yaooqinn@hotmail.com>
Author: hyukjinkwon <gurwls223@gmail.com>
Author: Adrian Ionescu <adrian@databricks.com>
Closes#20087 from fjh100456/HiveTableWriting.
## What changes were proposed in this pull request?
After session cloning in `TestHive`, the conf of the singleton SparkContext for derby DB location is changed to a new directory. The new directory is created in `HiveUtils.newTemporaryConfiguration(useInMemoryDerby = false)`.
This PR is to keep the conf value of `ConfVars.METASTORECONNECTURLKEY.varname` unchanged during the session clone.
## How was this patch tested?
The issue can be reproduced by the command:
> build/sbt -Phive "hive/test-only org.apache.spark.sql.hive.HiveSessionStateSuite org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite"
Also added a test case.
Author: gatorsmile <gatorsmile@gmail.com>
Closes#20328 from gatorsmile/fixTestFailure.
## What changes were proposed in this pull request?
There were two related fixes regarding `from_json`, `get_json_object` and `json_tuple` ([Fix#1](c8803c0685),
[Fix#2](86174ea89b)), but they weren't comprehensive it seems. I wanted to extend those fixes to all the parsers, and add tests for each case.
## How was this patch tested?
Regression tests
Author: Burak Yavuz <brkyvz@gmail.com>
Closes#20302 from brkyvz/json-invfix.
## What changes were proposed in this pull request?
`DataSourceV2Strategy` is missing in `HiveSessionStateBuilder`'s planner, which will throw exception as described in [SPARK-23140](https://issues.apache.org/jira/browse/SPARK-23140).
## How was this patch tested?
Manual test.
Author: jerryshao <sshao@hortonworks.com>
Closes#20305 from jerryshao/SPARK-23140.
## What changes were proposed in this pull request?
Lots of our tests don't properly shutdown everything they create, and end up leaking lots of threads. For example, `TaskSetManagerSuite` doesn't stop the extra `TaskScheduler` and `DAGScheduler` it creates. There are a couple more instances, eg. in `DAGSchedulerSuite`.
This PR adds the possibility to print out the not properly stopped thread list after a test suite executed. The format is the following:
```
===== FINISHED o.a.s.scheduler.DAGSchedulerSuite: 'task end event should have updated accumulators (SPARK-20342)' =====
...
===== Global thread whitelist loaded with name /thread_whitelist from classpath: rpc-client.*, rpc-server.*, shuffle-client.*, shuffle-server.*' =====
ScalaTest-run:
===== THREADS NOT STOPPED PROPERLY =====
ScalaTest-run: dag-scheduler-event-loop
ScalaTest-run: globalEventExecutor-2-5
ScalaTest-run:
===== END OF THREAD DUMP =====
ScalaTest-run:
===== EITHER PUT THREAD NAME INTO THE WHITELIST FILE OR SHUT IT DOWN PROPERLY =====
```
With the help of this leaking threads has been identified in TaskSetManagerSuite. My intention is to hunt down and fix such bugs in later PRs.
## How was this patch tested?
Manual: TaskSetManagerSuite test executed and found out where are the leaking threads.
Automated: Pass the Jenkins.
Author: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Closes#19893 from gaborgsomogyi/SPARK-16139.
## What changes were proposed in this pull request?
In another attempt to fix DataSourceWithHiveMetastoreCatalogSuite, this patch uses qualified table names (`default.t`) in the individual tests.
## How was this patch tested?
N/A (Test Only Change)
Author: Sameer Agarwal <sameerag@apache.org>
Closes#20273 from sameeragarwal/flaky-test.
## What changes were proposed in this pull request?
When `spark.sql.files.ignoreCorruptFiles=true`, we should ignore corrupted ORC files.
## How was this patch tested?
Pass the Jenkins with a newly added test case.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#20240 from dongjoon-hyun/SPARK-23049.
## What changes were proposed in this pull request?
`AnalysisBarrier` in the current master cuts off explain results for parsed logical plans;
```
scala> Seq((1, 1)).toDF("a", "b").groupBy("a").count().sample(0.1).explain(true)
== Parsed Logical Plan ==
Sample 0.0, 0.1, false, -7661439431999668039
+- AnalysisBarrier Aggregate [a#5], [a#5, count(1) AS count#14L]
```
To fix this, `AnalysisBarrier` needs to override `innerChildren` and this pr changed the output to;
```
== Parsed Logical Plan ==
Sample 0.0, 0.1, false, -5086223488015741426
+- AnalysisBarrier
+- Aggregate [a#5], [a#5, count(1) AS count#14L]
+- Project [_1#2 AS a#5, _2#3 AS b#6]
+- LocalRelation [_1#2, _2#3]
```
## How was this patch tested?
Added tests in `DataFrameSuite`.
Author: Takeshi Yamamuro <yamamuro@apache.org>
Closes#20247 from maropu/SPARK-23021-2.
## What changes were proposed in this pull request?
This patch bumps the master branch version to `2.4.0-SNAPSHOT`.
## How was this patch tested?
N/A
Author: gatorsmile <gatorsmile@gmail.com>
Closes#20222 from gatorsmile/bump24.
## What changes were proposed in this pull request?
The Spark 2.3 branch still failed due to the flaky test suite `DataSourceWithHiveMetastoreCatalogSuite `. https://amplab.cs.berkeley.edu/jenkins/job/spark-branch-2.3-test-sbt-hadoop-2.6/
Although https://github.com/apache/spark/pull/20207 is unable to reproduce it in Spark 2.3, it sounds like the current DB of Spark's Catalog is changed based on the following stacktrace. Thus, we just need to reset it.
```
[info] DataSourceWithHiveMetastoreCatalogSuite:
02:40:39.486 ERROR org.apache.hadoop.hive.ql.parse.CalcitePlanner: org.apache.hadoop.hive.ql.parse.SemanticException: Line 1:14 Table not found 't'
at org.apache.hadoop.hive.ql.parse.SemanticAnalyzer.getMetaData(SemanticAnalyzer.java:1594)
at org.apache.hadoop.hive.ql.parse.SemanticAnalyzer.getMetaData(SemanticAnalyzer.java:1545)
at org.apache.hadoop.hive.ql.parse.SemanticAnalyzer.genResolvedParseTree(SemanticAnalyzer.java:10077)
at org.apache.hadoop.hive.ql.parse.SemanticAnalyzer.analyzeInternal(SemanticAnalyzer.java:10128)
at org.apache.hadoop.hive.ql.parse.CalcitePlanner.analyzeInternal(CalcitePlanner.java:209)
at org.apache.hadoop.hive.ql.parse.BaseSemanticAnalyzer.analyze(BaseSemanticAnalyzer.java:227)
at org.apache.hadoop.hive.ql.Driver.compile(Driver.java:424)
at org.apache.hadoop.hive.ql.Driver.compile(Driver.java:308)
at org.apache.hadoop.hive.ql.Driver.compileInternal(Driver.java:1122)
at org.apache.hadoop.hive.ql.Driver.runInternal(Driver.java:1170)
at org.apache.hadoop.hive.ql.Driver.run(Driver.java:1059)
at org.apache.hadoop.hive.ql.Driver.run(Driver.java:1049)
at org.apache.spark.sql.hive.client.HiveClientImpl$$anonfun$runHive$1.apply(HiveClientImpl.scala:694)
at org.apache.spark.sql.hive.client.HiveClientImpl$$anonfun$runHive$1.apply(HiveClientImpl.scala:683)
at org.apache.spark.sql.hive.client.HiveClientImpl$$anonfun$withHiveState$1.apply(HiveClientImpl.scala:272)
at org.apache.spark.sql.hive.client.HiveClientImpl.liftedTree1$1(HiveClientImpl.scala:210)
at org.apache.spark.sql.hive.client.HiveClientImpl.retryLocked(HiveClientImpl.scala:209)
at org.apache.spark.sql.hive.client.HiveClientImpl.withHiveState(HiveClientImpl.scala:255)
at org.apache.spark.sql.hive.client.HiveClientImpl.runHive(HiveClientImpl.scala:683)
at org.apache.spark.sql.hive.client.HiveClientImpl.runSqlHive(HiveClientImpl.scala:673)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite$$anonfun$9$$anonfun$apply$1$$anonfun$apply$mcV$sp$3.apply$mcV$sp(HiveMetastoreCatalogSuite.scala:185)
at org.apache.spark.sql.test.SQLTestUtilsBase$class.withTable(SQLTestUtils.scala:273)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite.withTable(HiveMetastoreCatalogSuite.scala:139)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite$$anonfun$9$$anonfun$apply$1.apply$mcV$sp(HiveMetastoreCatalogSuite.scala:163)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite$$anonfun$9$$anonfun$apply$1.apply(HiveMetastoreCatalogSuite.scala:163)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite$$anonfun$9$$anonfun$apply$1.apply(HiveMetastoreCatalogSuite.scala:163)
at org.scalatest.OutcomeOf$class.outcomeOf(OutcomeOf.scala:85)
at org.scalatest.OutcomeOf$.outcomeOf(OutcomeOf.scala:104)
at org.scalatest.Transformer.apply(Transformer.scala:22)
at org.scalatest.Transformer.apply(Transformer.scala:20)
at org.scalatest.FunSuiteLike$$anon$1.apply(FunSuiteLike.scala:186)
at org.apache.spark.SparkFunSuite.withFixture(SparkFunSuite.scala:68)
at org.scalatest.FunSuiteLike$class.invokeWithFixture$1(FunSuiteLike.scala:183)
at org.scalatest.FunSuiteLike$$anonfun$runTest$1.apply(FunSuiteLike.scala:196)
at org.scalatest.FunSuiteLike$$anonfun$runTest$1.apply(FunSuiteLike.scala:196)
at org.scalatest.SuperEngine.runTestImpl(Engine.scala:289)
at org.scalatest.FunSuiteLike$class.runTest(FunSuiteLike.scala:196)
at org.scalatest.FunSuite.runTest(FunSuite.scala:1560)
at org.scalatest.FunSuiteLike$$anonfun$runTests$1.apply(FunSuiteLike.scala:229)
at org.scalatest.FunSuiteLike$$anonfun$runTests$1.apply(FunSuiteLike.scala:229)
at org.scalatest.SuperEngine$$anonfun$traverseSubNodes$1$1.apply(Engine.scala:396)
at org.scalatest.SuperEngine$$anonfun$traverseSubNodes$1$1.apply(Engine.scala:384)
at scala.collection.immutable.List.foreach(List.scala:381)
at org.scalatest.SuperEngine.traverseSubNodes$1(Engine.scala:384)
at org.scalatest.SuperEngine.org$scalatest$SuperEngine$$runTestsInBranch(Engine.scala:379)
at org.scalatest.SuperEngine.runTestsImpl(Engine.scala:461)
at org.scalatest.FunSuiteLike$class.runTests(FunSuiteLike.scala:229)
at org.scalatest.FunSuite.runTests(FunSuite.scala:1560)
at org.scalatest.Suite$class.run(Suite.scala:1147)
at org.scalatest.FunSuite.org$scalatest$FunSuiteLike$$super$run(FunSuite.scala:1560)
at org.scalatest.FunSuiteLike$$anonfun$run$1.apply(FunSuiteLike.scala:233)
at org.scalatest.FunSuiteLike$$anonfun$run$1.apply(FunSuiteLike.scala:233)
at org.scalatest.SuperEngine.runImpl(Engine.scala:521)
at org.scalatest.FunSuiteLike$class.run(FunSuiteLike.scala:233)
at org.apache.spark.SparkFunSuite.org$scalatest$BeforeAndAfterAll$$super$run(SparkFunSuite.scala:31)
at org.scalatest.BeforeAndAfterAll$class.liftedTree1$1(BeforeAndAfterAll.scala:213)
at org.scalatest.BeforeAndAfterAll$class.run(BeforeAndAfterAll.scala:210)
at org.apache.spark.SparkFunSuite.run(SparkFunSuite.scala:31)
at org.scalatest.tools.Framework.org$scalatest$tools$Framework$$runSuite(Framework.scala:314)
at org.scalatest.tools.Framework$ScalaTestTask.execute(Framework.scala:480)
at sbt.ForkMain$Run$2.call(ForkMain.java:296)
at sbt.ForkMain$Run$2.call(ForkMain.java:286)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
```
## How was this patch tested?
N/A
Author: gatorsmile <gatorsmile@gmail.com>
Closes#20218 from gatorsmile/testFixAgain.
## What changes were proposed in this pull request?
Two unit test will fail due to Windows format path:
1.test(s"$version: read avro file containing decimal")
```
org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
```
2.test(s"$version: SPARK-17920: Insert into/overwrite avro table")
```
Unable to infer the schema. The schema specification is required to create the table `default`.`tab2`.;
org.apache.spark.sql.AnalysisException: Unable to infer the schema. The schema specification is required to create the table `default`.`tab2`.;
```
This pr fix these two unit test by change Windows path into URI path.
## How was this patch tested?
Existed.
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: wuyi5 <ngone_5451@163.com>
Closes#20199 from Ngone51/SPARK-22967.
## What changes were proposed in this pull request?
When users' DB description is NULL, users might hit `NullPointerException`. This PR is to fix the issue.
## How was this patch tested?
Added test cases
Author: gatorsmile <gatorsmile@gmail.com>
Closes#20215 from gatorsmile/SPARK-23001.
## What changes were proposed in this pull request?
This is mostly from https://github.com/apache/spark/pull/13775
The wrapper solution is pretty good for string/binary type, as the ORC column vector doesn't keep bytes in a continuous memory region, and has a significant overhead when copying the data to Spark columnar batch. For other cases, the wrapper solution is almost same with the current solution.
I think we can treat the wrapper solution as a baseline and keep improving the writing to Spark solution.
## How was this patch tested?
existing tests.
Author: Wenchen Fan <wenchen@databricks.com>
Closes#20205 from cloud-fan/orc.
## What changes were proposed in this pull request?
This PR adds an ORC columnar-batch reader to native `OrcFileFormat`. Since both Spark `ColumnarBatch` and ORC `RowBatch` are used together, it is faster than the current Spark implementation. This replaces the prior PR, #17924.
Also, this PR adds `OrcReadBenchmark` to show the performance improvement.
## How was this patch tested?
Pass the existing test cases.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#19943 from dongjoon-hyun/SPARK-16060.
