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1602 commits

Author SHA1 Message Date
Josh Rosen 30b706b7b3 [SPARK-11389][CORE] Add support for off-heap memory to MemoryManager
In order to lay the groundwork for proper off-heap memory support in SQL / Tungsten, we need to extend our MemoryManager to perform bookkeeping for off-heap memory.

## User-facing changes

This PR introduces a new configuration, `spark.memory.offHeapSize` (name subject to change), which specifies the absolute amount of off-heap memory that Spark and Spark SQL can use. If Tungsten is configured to use off-heap execution memory for allocating data pages, then all data page allocations must fit within this size limit.

## Internals changes

This PR contains a lot of internal refactoring of the MemoryManager. The key change at the heart of this patch is the introduction of a `MemoryPool` class (name subject to change) to manage the bookkeeping for a particular category of memory (storage, on-heap execution, and off-heap execution). These MemoryPools are not fixed-size; they can be dynamically grown and shrunk according to the MemoryManager's policies. In StaticMemoryManager, these pools have fixed sizes, proportional to the legacy `[storage|shuffle].memoryFraction`. In the new UnifiedMemoryManager, the sizes of these pools are dynamically adjusted according to its policies.

There are two subclasses of `MemoryPool`: `StorageMemoryPool` manages storage memory and `ExecutionMemoryPool` manages execution memory. The MemoryManager creates two execution pools, one for on-heap memory and one for off-heap. Instances of `ExecutionMemoryPool` manage the logic for fair sharing of their pooled memory across running tasks (in other words, the ShuffleMemoryManager-like logic has been moved out of MemoryManager and pushed into these ExecutionMemoryPool instances).

I think that this design is substantially easier to understand and reason about than the previous design, where most of these responsibilities were handled by MemoryManager and its subclasses. To see this, take at look at how simple the logic in `UnifiedMemoryManager` has become: it's now very easy to see when memory is dynamically shifted between storage and execution.

## TODOs

- [x] Fix handful of test failures in the MemoryManagerSuites.
- [x] Fix remaining TODO comments in code.
- [ ] Document new configuration.
- [x] Fix commented-out tests / asserts:
  - [x] UnifiedMemoryManagerSuite.
- [x] Write tests that exercise the new off-heap memory management policies.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #9344 from JoshRosen/offheap-memory-accounting.
2015-11-06 18:17:34 -08:00
Imran Rashid 49f1a82037 [SPARK-10116][CORE] XORShiftRandom.hashSeed is random in high bits
https://issues.apache.org/jira/browse/SPARK-10116

This is really trivial, just happened to notice it -- if `XORShiftRandom.hashSeed` is really supposed to have random bits throughout (as the comment implies), it needs to do something for the conversion to `long`.

mengxr mkolod

Author: Imran Rashid <irashid@cloudera.com>

Closes #8314 from squito/SPARK-10116.
2015-11-06 20:06:24 +00:00
Davies Liu eec74ba8bd [SPARK-7542][SQL] Support off-heap index/sort buffer
This brings the support of off-heap memory for array inside BytesToBytesMap and InMemorySorter, then we could allocate all the memory from off-heap for execution.

Closes #8068

Author: Davies Liu <davies@databricks.com>

Closes #9477 from davies/unsafe_timsort.
2015-11-05 19:02:18 -08:00
Josh Rosen d0b5633962 [SPARK-11307] Reduce memory consumption of OutputCommitCoordinator
OutputCommitCoordinator uses a map in a place where an array would suffice, increasing its memory consumption for result stages with millions of tasks.

This patch replaces that map with an array. The only tricky part of this is reasoning about the range of possible array indexes in order to make sure that we never index out of bounds.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #9274 from JoshRosen/SPARK-11307.
2015-11-04 17:19:52 -08:00
Adam Roberts 701fb50520 [SPARK-10949] Update Snappy version to 1.1.2
This is an updated version of #8995 by a-roberts. Original description follows:

Snappy now supports concatenation of serialized streams, this patch contains a version number change and the "does not support" test is now a "supports" test.

Snappy 1.1.2 changelog mentions:

> snappy-java-1.1.2 (22 September 2015)
> This is a backward compatible release for 1.1.x.
> Add AIX (32-bit) support.
> There is no upgrade for the native libraries of the other platforms.

> A major change since 1.1.1 is a support for reading concatenated results of SnappyOutputStream(s)
> snappy-java-1.1.2-RC2 (18 May 2015)
> Fix #107: SnappyOutputStream.close() is not idempotent
> snappy-java-1.1.2-RC1 (13 May 2015)
> SnappyInputStream now supports reading concatenated compressed results of SnappyOutputStream
> There has been no compressed format change since 1.0.5.x. So You can read the compressed results > interchangeablly between these versions.
> Fixes a problem when java.io.tmpdir does not exist.

Closes #8995.

Author: Adam Roberts <aroberts@uk.ibm.com>
Author: Josh Rosen <joshrosen@databricks.com>

Closes #9439 from JoshRosen/update-snappy.
2015-11-04 14:03:31 -08:00
Marcelo Vanzin 8790ee6d69 [SPARK-10622][CORE][YARN] Differentiate dead from "mostly dead" executors.
In YARN mode, when preemption is enabled, we may leave executors in a
zombie state while we wait to retrieve the reason for which the executor
exited. This is so that we don't account for failed tasks that were
running on a preempted executor.

The issue is that while we wait for this information, the scheduler
might decide to schedule tasks on the executor, which will never be
able to run them. Other side effects include the block manager still
considering the executor available to cache blocks, for example.

So, when we know that an executor went down but we don't know why,
stop everything related to the executor, except its running tasks.
Only when we know the reason for the exit (or give up waiting for
it) we do update the running tasks.

This is achieved by a new `disableExecutor()` method in the
`Schedulable` interface. For managers that do not behave like this
(i.e. every one but YARN), the existing `executorLost()` method
will behave the same way it did before.

On top of that change, a few minor changes that made debugging easier,
and fixed some other minor issues:
- The cluster-mode AM was printing a misleading log message every
  time an executor disconnected from the driver (because the akka
  actor system was shared between driver and AM).
- Avoid sending unnecessary requests for an executor's exit reason
  when we already know it was explicitly disabled / killed. This
  avoids both multiple requests, and unnecessary requests that would
  just cause warning messages on the AM (in the explicit kill case).
- Tone down a log message about the executor being lost when it
  exited normally (e.g. preemption)
- Wake up the AM monitor thread when requests for executor loss
  reasons arrive too, so that we can more quickly remove executors
  from this zombie state.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #8887 from vanzin/SPARK-10622.
2015-11-04 09:07:22 -08:00
tedyu c09e513987 [SPARK-11442] Reduce numSlices for local metrics test of SparkListenerSuite
In the thread, http://search-hadoop.com/m/q3RTtcQiFSlTxeP/test+failed+due+to+OOME&subj=test+failed+due+to+OOME, it was discussed that memory consumption for SparkListenerSuite should be brought down.

This is an attempt in that direction by reducing numSlices for local metrics test.

Author: tedyu <yuzhihong@gmail.com>

Closes #9384 from tedyu/master.
2015-11-04 10:51:40 +00:00
Marcelo Vanzin 53e9cee3e4 [SPARK-11466][CORE] Avoid mockito in multi-threaded FsHistoryProviderSuite test.
The test functionality should be the same, but without using mockito; logs don't
really say anything useful but I suspect it may be the cause of the flakiness,
since updating mocks when multiple threads may be using it doesn't work very
well. It also allows some other cleanup (= less test code in FsHistoryProvider).

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #9425 from vanzin/SPARK-11466.
2015-11-03 16:26:28 -08:00
Mark Grover b2e4b314d9 [SPARK-9790][YARN] Expose in WebUI if NodeManager is the reason why executors were killed.
Author: Mark Grover <grover.markgrover@gmail.com>

Closes #8093 from markgrover/nm2.
2015-11-03 08:51:40 -08:00
Jacek Lewandowski 233e534ac4 [SPARK-11344] Made ApplicationDescription and DriverDescription case classes
DriverDescription refactored to case class because it included no mutable fields.

ApplicationDescription had one mutable field, which was appUiUrl. This field was set by the driver to point to the driver web UI. Master was modifying this field when the application was removed to redirect requests to history server. This was wrong because objects which are sent over the wire should be immutable. Now appUiUrl is immutable in ApplicationDescription and always points to the driver UI even if it is already shutdown. The UI url which master exposes to the user and modifies dynamically is now included into ApplicationInfo - a data object which describes the application state internally in master. That URL in ApplicationInfo is initialised with the value from ApplicationDescription.

ApplicationDescription also included value user, which is now a part of case class fields.

Author: Jacek Lewandowski <lewandowski.jacek@gmail.com>

Closes #9299 from jacek-lewandowski/SPARK-11344.
2015-11-03 12:46:11 +00:00
Marcelo Vanzin 71d1c907de [SPARK-10997][CORE] Add "client mode" to netty rpc env.
"Client mode" means the RPC env will not listen for incoming connections.
This allows certain processes in the Spark stack (such as Executors or
tha YARN client-mode AM) to act as pure clients when using the netty-based
RPC backend, reducing the number of sockets needed by the app and also the
number of open ports.

Client connections are also preferred when endpoints that actually have
a listening socket are involved; so, for example, if a Worker connects
to a Master and the Master needs to send a message to a Worker endpoint,
that client connection will be used, even though the Worker is also
listening for incoming connections.

With this change, the workaround for SPARK-10987 isn't necessary anymore, and
is removed. The AM connects to the driver in "client mode", and that connection
is used for all driver <-> AM communication, and so the AM is properly notified
when the connection goes down.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #9210 from vanzin/SPARK-10997.
2015-11-02 10:26:36 -08:00
Liang-Chi Hsieh e209fa271a [SPARK-11271][SPARK-11016][CORE] Use Spark BitSet instead of RoaringBitmap to reduce memory usage
JIRA: https://issues.apache.org/jira/browse/SPARK-11271

As reported in the JIRA ticket, when there are too many tasks, the memory usage of MapStatus will cause problem. Use BitSet instead of RoaringBitMap should be more efficient in memory usage.

Author: Liang-Chi Hsieh <viirya@appier.com>

Closes #9243 from viirya/mapstatus-bitset.
2015-11-02 08:52:52 +00:00
Marcelo Vanzin f8d93edec8 [SPARK-11073][CORE][YARN] Remove akka dependency in secret key generation.
Use standard JDK APIs for that (with a little help from Guava). Most of the
changes here are in test code, since there were no tests specific to that
part of the code.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #9257 from vanzin/SPARK-11073.
2015-11-01 15:57:42 -08:00
Marcelo Vanzin cf04fdfe71 [SPARK-11020][CORE] Wait for HDFS to leave safe mode before initializing HS.
Large HDFS clusters may take a while to leave safe mode when starting; this change
makes the HS wait for that before doing checks about its configuraton. This means
the HS won't stop right away if HDFS is in safe mode and the configuration is not
correct, but that should be a very uncommon situation.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #9043 from vanzin/SPARK-11020.
2015-11-01 14:42:18 -08:00
Christian Kadner dc7e399fc0 [SPARK-11338] [WEBUI] Prepend app links on HistoryPage with uiRoot path
[SPARK-11338: HistoryPage not multi-tenancy enabled ...](https://issues.apache.org/jira/browse/SPARK-11338)
- `HistoryPage.scala` ...prepending all page links with the web proxy (`uiRoot`) path
- `HistoryServerSuite.scala` ...adding a test case to verify all site-relative links are prefixed when the environment variable `APPLICATION_WEB_PROXY_BASE` (or System property `spark.ui.proxyBase`) is set

Author: Christian Kadner <ckadner@us.ibm.com>

Closes #9291 from ckadner/SPARK-11338 and squashes the following commits:

01d2f35 [Christian Kadner] [SPARK-11338][WebUI] nit fixes
d054bd7 [Christian Kadner] [SPARK-11338][WebUI] prependBaseUri in method makePageLink
8bcb3dc [Christian Kadner] [SPARK-11338][WebUI] Prepend application links on HistoryPage with uiRoot path
2015-11-01 13:09:42 -08:00
Davies Liu 45029bfdea [SPARK-11423] remove MapPartitionsWithPreparationRDD
Since we do not need to preserve a page before calling compute(), MapPartitionsWithPreparationRDD is not needed anymore.

This PR basically revert #8543, #8511, #8038, #8011

Author: Davies Liu <davies@databricks.com>

Closes #9381 from davies/remove_prepare2.
2015-10-30 15:47:40 -07:00
Davies Liu 56419cf11f [SPARK-10342] [SPARK-10309] [SPARK-10474] [SPARK-10929] [SQL] Cooperative memory management
This PR introduce a mechanism to call spill() on those SQL operators that support spilling (for example, BytesToBytesMap, UnsafeExternalSorter and ShuffleExternalSorter) if there is not enough memory for execution. The preserved first page is needed anymore, so removed.

Other Spillable objects in Spark core (ExternalSorter and AppendOnlyMap) are not included in this PR, but those could benefit from this (trigger others' spilling).

The PrepareRDD may be not needed anymore, could be removed in follow up PR.

The following script will fail with OOM before this PR, finished in 150 seconds with 2G heap (also works in 1.5 branch, with similar duration).

```python
sqlContext.setConf("spark.sql.shuffle.partitions", "1")
df = sqlContext.range(1<<25).selectExpr("id", "repeat(id, 2) as s")
df2 = df.select(df.id.alias('id2'), df.s.alias('s2'))
j = df.join(df2, df.id==df2.id2).groupBy(df.id).max("id", "id2")
j.explain()
print j.count()
```

For thread-safety, here what I'm got:

1) Without calling spill(), the operators should only be used by single thread, no safety problems.

2) spill() could be triggered in two cases, triggered by itself, or by other operators. we can check trigger == this in spill(), so it's still in the same thread, so safety problems.

3) if it's triggered by other operators (right now cache will not trigger spill()), we only spill the data into disk when it's in scanning stage (building is finished), so the in-memory sorter or memory pages are read-only, we only need to synchronize the iterator and change it.

4) During scanning, the iterator will only use one record in one page, we can't free this page, because the downstream is currently using it (used by UnsafeRow or other objects). In BytesToBytesMap, we just skip the current page, and dump all others into disk. In UnsafeExternalSorter, we keep the page that is used by current record (having the same baseObject), free it when loading the next record. In ShuffleExternalSorter, the spill() will not trigger during scanning.

5) In order to avoid deadlock, we didn't call acquireMemory during spill (so we reused the pointer array in InMemorySorter).

Author: Davies Liu <davies@databricks.com>

Closes #9241 from davies/force_spill.
2015-10-29 23:38:06 -07:00
Kay Ousterhout b960a89056 [SPARK-11178] Improving naming around task failures.
Commit af3bc59d1f introduced new
functionality so that if an executor dies for a reason that's not
caused by one of the tasks running on the executor (e.g., due to
pre-emption), Spark doesn't count the failure towards the maximum
number of failures for the task.  That commit introduced some vague
naming that this commit attempts to fix; in particular:

(1) The variable "isNormalExit", which was used to refer to cases where
the executor died for a reason unrelated to the tasks running on the
machine, has been renamed (and reversed) to "exitCausedByApp". The problem
with the existing name is that it's not clear (at least to me!) what it
means for an exit to be "normal"; the new name is intended to make the
purpose of this variable more clear.

(2) The variable "shouldEventuallyFailJob" has been renamed to
"countTowardsTaskFailures". This variable is used to determine whether
a task's failure should be counted towards the maximum number of failures
allowed for a task before the associated Stage is aborted. The problem
with the existing name is that it can be confused with implying that
the task's failure should immediately cause the stage to fail because it
is somehow fatal (this is the case for a fetch failure, for example: if
a task fails because of a fetch failure, there's no point in retrying,
and the whole stage should be failed).

Author: Kay Ousterhout <kayousterhout@gmail.com>

Closes #9164 from kayousterhout/SPARK-11178.
2015-10-27 16:55:10 -07:00
zsxwing 9fbd75ab5d [SPARK-11212][CORE][STREAMING] Make preferred locations support ExecutorCacheTaskLocation and update…
… ReceiverTracker and ReceiverSchedulingPolicy to use it

This PR includes the following changes:

1. Add a new preferred location format, `executor_<host>_<executorID>` (e.g., "executor_localhost_2"), to support specifying the executor locations for RDD.
2. Use the new preferred location format in `ReceiverTracker` to optimize the starting time of Receivers when there are multiple executors in a host.

The goal of this PR is to enable the streaming scheduler to place receivers (which run as tasks) in specific executors. Basically, I want to have more control on the placement of the receivers such that they are evenly distributed among the executors. We tried to do this without changing the core scheduling logic. But it does not allow specifying particular executor as preferred location, only at the host level. So if there are two executors in the same host, and I want two receivers to run on them (one on each executor), I cannot specify that. Current code only specifies the host as preference, which may end up launching both receivers on the same executor. We try to work around it but restarting a receiver when it does not launch in the desired executor and hope that next time it will be started in the right one. But that cause lots of restarts, and delays in correctly launching the receiver.

So this change, would allow the streaming scheduler to specify the exact executor as the preferred location. Also this is not exposed to the user, only the streaming scheduler uses this.

Author: zsxwing <zsxwing@gmail.com>

Closes #9181 from zsxwing/executor-location.
2015-10-27 16:14:33 -07:00
Josh Rosen 85e654c5ec [SPARK-10984] Simplify *MemoryManager class structure
This patch refactors the MemoryManager class structure. After #9000, Spark had the following classes:

- MemoryManager
- StaticMemoryManager
- ExecutorMemoryManager
- TaskMemoryManager
- ShuffleMemoryManager

This is fairly confusing. To simplify things, this patch consolidates several of these classes:

- ShuffleMemoryManager and ExecutorMemoryManager were merged into MemoryManager.
- TaskMemoryManager is moved into Spark Core.

**Key changes and tasks**:

- [x] Merge ExecutorMemoryManager into MemoryManager.
  - [x] Move pooling logic into Allocator.
- [x] Move TaskMemoryManager from `spark-unsafe` to `spark-core`.
- [x] Refactor the existing Tungsten TaskMemoryManager interactions so Tungsten code use only this and not both this and ShuffleMemoryManager.
- [x] Refactor non-Tungsten code to use the TaskMemoryManager instead of ShuffleMemoryManager.
- [x] Merge ShuffleMemoryManager into MemoryManager.
  - [x] Move code
  - [x] ~~Simplify 1/n calculation.~~ **Will defer to followup, since this needs more work.**
- [x] Port ShuffleMemoryManagerSuite tests.
- [x] Move classes from `unsafe` package to `memory` package.
- [ ] Figure out how to handle the hacky use of the memory managers in HashedRelation's broadcast variable construction.
- [x] Test porting and cleanup: several tests relied on mock functionality (such as `TestShuffleMemoryManager.markAsOutOfMemory`) which has been changed or broken during the memory manager consolidation
  - [x] AbstractBytesToBytesMapSuite
  - [x] UnsafeExternalSorterSuite
  - [x] UnsafeFixedWidthAggregationMapSuite
  - [x] UnsafeKVExternalSorterSuite

**Compatiblity notes**:

- This patch introduces breaking changes in `ExternalAppendOnlyMap`, which is marked as `DevloperAPI` (likely for legacy reasons): this class now cannot be used outside of a task.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #9127 from JoshRosen/SPARK-10984.
2015-10-25 21:19:52 -07:00
Marcelo Vanzin fa6a4fbf08 [SPARK-11134][CORE] Increase LauncherBackendSuite timeout.
This test can take a little while to finish on slow / loaded machines.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #9235 from vanzin/SPARK-11134.
2015-10-22 22:41:21 -07:00
Andrew Or 34e71c6d89 [SPARK-11251] Fix page size calculation in local mode
```
// My machine only has 8 cores
$ bin/spark-shell --master local[32]
scala> val df = sc.parallelize(Seq((1, 1), (2, 2))).toDF("a", "b")
scala> df.as("x").join(df.as("y"), $"x.a" === $"y.a").count()

Caused by: java.io.IOException: Unable to acquire 2097152 bytes of memory
	at org.apache.spark.util.collection.unsafe.sort.UnsafeExternalSorter.acquireNewPage(UnsafeExternalSorter.java:351)
```

Author: Andrew Or <andrew@databricks.com>

Closes #9209 from andrewor14/fix-local-page-size.
2015-10-22 15:58:08 -07:00
Josh Rosen f6d06adf05 [SPARK-10708] Consolidate sort shuffle implementations
There's a lot of duplication between SortShuffleManager and UnsafeShuffleManager. Given that these now provide the same set of functionality, now that UnsafeShuffleManager supports large records, I think that we should replace SortShuffleManager's serialized shuffle implementation with UnsafeShuffleManager's and should merge the two managers together.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #8829 from JoshRosen/consolidate-sort-shuffle-implementations.
2015-10-22 09:46:30 -07:00
zhichao.li c03b6d1158 [SPARK-11121][CORE] Correct the TaskLocation type
Correct the logic to return `HDFSCacheTaskLocation` instance when the input `str` is a in memory location.

Author: zhichao.li <zhichao.li@intel.com>

Closes #9096 from zhichao-li/uselessBranch.
2015-10-22 03:59:26 -07:00
Liang-Chi Hsieh a1413b3662 [SPARK-11051][CORE] Do not allow local checkpointing after the RDD is materialized and checkpointed
JIRA: https://issues.apache.org/jira/browse/SPARK-11051

When a `RDD` is materialized and checkpointed, its partitions and dependencies are cleared. If we allow local checkpointing on it and assign `LocalRDDCheckpointData` to its `checkpointData`. Next time when the RDD is materialized again, the error will be thrown.

Author: Liang-Chi Hsieh <viirya@appier.com>

Closes #9072 from viirya/no-localcheckpoint-after-checkpoint.
2015-10-19 16:16:31 -07:00
Marcelo Vanzin 7ab0ce6501 [SPARK-11131][CORE] Fix race in worker registration protocol.
Because the registration RPC was not really an RPC, but a bunch of
disconnected messages, it was possible for other messages to be
sent before the reply to the registration arrived, and that would
confuse the Worker. Especially in local-cluster mode, the worker was
succeptible to receiving an executor request before it received a
message from the master saying registration succeeded.

On top of the above, the change also fixes a ClassCastException when
the registration fails, which also affects the executor registration
protocol. Because the `ask` is issued with a specific return type,
if the error message (of a different type) was returned instead, the
code would just die with an exception. This is fixed by having a common
base trait for these reply messages.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #9138 from vanzin/SPARK-11131.
2015-10-19 16:14:50 -07:00
Andrew Or 3b364ff0a4 [SPARK-11078] Ensure spilling tests actually spill
#9084 uncovered that many tests that test spilling don't actually spill. This is a follow-up patch to fix that to ensure our unit tests actually catch potential bugs in spilling. The size of this patch is inflated by the refactoring of `ExternalSorterSuite`, which had a lot of duplicate code and logic.

Author: Andrew Or <andrew@databricks.com>

Closes #9124 from andrewor14/spilling-tests.
2015-10-15 14:50:01 -07:00
KaiXinXiaoLei 2d000124b7 [SPARK-10515] When killing executor, the pending replacement executors should not be lost
If the heartbeat receiver kills executors (and new ones are not registered to replace them), the idle timeout for the old executors will be lost (and then change a total number of executors requested by Driver), So new ones will be not to asked to replace them.
For example, executorsPendingToRemove=Set(1), and executor 2 is idle timeout before a new executor is asked to replace executor 1. Then driver kill executor 2, and sending RequestExecutors to AM. But executorsPendingToRemove=Set(1,2), So AM doesn't allocate a executor to replace 1.

see: https://github.com/apache/spark/pull/8668

Author: KaiXinXiaoLei <huleilei1@huawei.com>
Author: huleilei <huleilei1@huawei.com>

Closes #8945 from KaiXinXiaoLei/pendingexecutor.
2015-10-15 14:48:01 -07:00
Carson Wang d45a0d3ca2 [SPARK-11047] Internal accumulators miss the internal flag when replaying events in the history server
Internal accumulators don't write the internal flag to event log. So on the history server Web UI, all accumulators are not internal. This causes incorrect peak execution memory and unwanted accumulator table displayed on the stage page.
To fix it, I add the "internal" property of AccumulableInfo when writing the event log.

Author: Carson Wang <carson.wang@intel.com>

Closes #9061 from carsonwang/accumulableBug.
2015-10-15 10:36:54 -07:00
shellberg 523adc24a6 [SPARK-11066] Update DAGScheduler's "misbehaved ResultHandler"
Restrict tasks (of job) to only 1 to ensure that the causing Exception asserted for job failure is the deliberately thrown DAGSchedulerSuiteDummyException intended, not an UnsupportedOperationException from any second/subsequent tasks that can propagate from a race condition during code execution.

Author: shellberg <sah@zepler.org>

Closes #9076 from shellberg/shellberg-DAGSchedulerSuite-misbehavedResultHandlerTest-patch-1.
2015-10-15 18:07:10 +01:00
Adam Lewandowski 0f62c2282b [SPARK-11093] [CORE] ChildFirstURLClassLoader#getResources should return all found resources, not just those in the child classloader
Author: Adam Lewandowski <alewandowski@ipcoop.com>

Closes #9106 from alewando/childFirstFix.
2015-10-15 09:45:54 -07:00
Reynold Xin cf2e0ae720 [SPARK-11096] Post-hoc review Netty based RPC implementation - round 2
A few more changes:

1. Renamed IDVerifier -> RpcEndpointVerifier
2. Renamed NettyRpcAddress -> RpcEndpointAddress
3. Simplified NettyRpcHandler a bit by removing the connection count tracking. This is OK because I now force spark.shuffle.io.numConnectionsPerPeer to 1
4. Reduced spark.rpc.connect.threads to 64. It would be great to eventually remove this extra thread pool.
5. Minor cleanup & documentation.

Author: Reynold Xin <rxin@databricks.com>

Closes #9112 from rxin/SPARK-11096.
2015-10-14 12:41:02 -07:00
Andrew Or b3ffac5178 [SPARK-10983] Unified memory manager
This patch unifies the memory management of the storage and execution regions such that either side can borrow memory from each other. When memory pressure arises, storage will be evicted in favor of execution. To avoid regressions in cases where storage is crucial, we dynamically allocate a fraction of space for storage that execution cannot evict. Several configurations are introduced:

- **spark.memory.fraction (default 0.75)**: ​fraction of the heap space used for execution and storage. The lower this is, the more frequently spills and cached data eviction occur. The purpose of this config is to set aside memory for internal metadata, user data structures, and imprecise size estimation in the case of sparse, unusually large records.

- **spark.memory.storageFraction (default 0.5)**: size of the storage region within the space set aside by `s​park.memory.fraction`. ​Cached data may only be evicted if total storage exceeds this region.

- **spark.memory.useLegacyMode (default false)**: whether to use the memory management that existed in Spark 1.5 and before. This is mainly for backward compatibility.

For a detailed description of the design, see [SPARK-10000](https://issues.apache.org/jira/browse/SPARK-10000). This patch builds on top of the `MemoryManager` interface introduced in #9000.

Author: Andrew Or <andrew@databricks.com>

Closes #9084 from andrewor14/unified-memory-manager.
2015-10-13 13:49:59 -07:00
Reynold Xin 1797055dbf [SPARK-11079] Post-hoc review Netty-based RPC - round 1
I'm going through the implementation right now for post-doc review. Adding more comments and renaming things as I go through them.

I also want to write higher level documentation about how the whole thing works -- but those will come in other pull requests.

Author: Reynold Xin <rxin@databricks.com>

Closes #9091 from rxin/rpc-review.
2015-10-13 09:51:20 -07:00
Tom Graves 63c340a710 [SPARK-10858] YARN: archives/jar/files rename with # doesn't work unl
https://issues.apache.org/jira/browse/SPARK-10858

The issue here is that in resolveURI we default to calling new File(path).getAbsoluteFile().toURI().  But if the path passed in already has a # in it then File(path) will think that is supposed to be part of the actual file path and not a fragment so it changes # to %23. Then when we try to parse that  later in Client as a URI it doesn't recognize there is a fragment.

so to fix we just check if there is a fragment, still create the File like we did before and then add the fragment back on.

Author: Tom Graves <tgraves@yahoo-inc.com>

Closes #9035 from tgravescs/SPARK-10858.
2015-10-09 14:06:25 -07:00
Marcelo Vanzin 015f7ef503 [SPARK-8673] [LAUNCHER] API and infrastructure for communicating with child apps.
This change adds an API that encapsulates information about an app
launched using the library. It also creates a socket-based communication
layer for apps that are launched as child processes; the launching
application listens for connections from launched apps, and once
communication is established, the channel can be used to send updates
to the launching app, or to send commands to the child app.

The change also includes hooks for local, standalone/client and yarn
masters.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #7052 from vanzin/SPARK-8673.
2015-10-09 15:28:09 -05:00
Andrew Or 67fbecbf32 [SPARK-10956] Common MemoryManager interface for storage and execution
This patch introduces a `MemoryManager` that is the central arbiter of how much memory to grant to storage and execution. This patch is primarily concerned only with refactoring while preserving the existing behavior as much as possible.

This is the first step away from the existing rigid separation of storage and execution memory, which has several major drawbacks discussed on the [issue](https://issues.apache.org/jira/browse/SPARK-10956). It is the precursor of a series of patches that will attempt to address those drawbacks.

Author: Andrew Or <andrew@databricks.com>
Author: Josh Rosen <joshrosen@databricks.com>
Author: andrewor14 <andrew@databricks.com>

Closes #9000 from andrewor14/memory-manager.
2015-10-08 21:44:59 -07:00
zsxwing 107320c9bb [SPARK-6028] [CORE] Remerge #6457: new RPC implemetation and also pick #8905
This PR just reverted 02144d6745 to remerge #6457 and also included the commits in #8905.

Author: zsxwing <zsxwing@gmail.com>

Closes #8944 from zsxwing/SPARK-6028.
2015-10-03 01:04:35 -07:00
Joshi f85aa06464 [SPARK-10317] [CORE] Compatibility between history server script and functionality
Compatibility between history server script and functionality

The history server has its argument parsing class in HistoryServerArguments. However, this doesn't get involved in the start-history-server.sh codepath where the $0 arg is assigned to spark.history.fs.logDirectory and all other arguments discarded (e.g --property-file.)
This stops the other options being usable from this script

Author: Joshi <rekhajoshm@gmail.com>
Author: Rekha Joshi <rekhajoshm@gmail.com>

Closes #8758 from rekhajoshm/SPARK-10317.
2015-10-02 15:26:11 -07:00
zsxwing 9b3e7768a2 [SPARK-10058] [CORE] [TESTS] Fix the flaky tests in HeartbeatReceiverSuite
Fixed the test failure here: https://amplab.cs.berkeley.edu/jenkins/view/Spark-QA-Test/job/Spark-1.5-SBT/116/AMPLAB_JENKINS_BUILD_PROFILE=hadoop2.2,label=spark-test/testReport/junit/org.apache.spark/HeartbeatReceiverSuite/normal_heartbeat/

This failure is because `HeartbeatReceiverSuite. heartbeatReceiver` may receive `SparkListenerExecutorAdded("driver")` sent from [LocalBackend](8fb3a65cbb/core/src/main/scala/org/apache/spark/scheduler/local/LocalBackend.scala (L121)).

There are other race conditions in `HeartbeatReceiverSuite` because `HeartbeatReceiver.onExecutorAdded` and `HeartbeatReceiver.onExecutorRemoved` are asynchronous. This PR also fixed them.

Author: zsxwing <zsxwing@gmail.com>

Closes #8946 from zsxwing/SPARK-10058.
2015-10-01 07:09:31 -07:00
zsxwing dba95ea032 [SPARK-10825] [CORE] [TESTS] Fix race conditions in StandaloneDynamicAllocationSuite
Fix the following issues in StandaloneDynamicAllocationSuite:

1. It should not assume master and workers start in order
2. It should not assume master and workers get ready at once
3. It should not assume the application is already registered with master after creating SparkContext
4. It should not access Master.app and idToApp which are not thread safe

The changes includes:
* Use `eventually` to wait until master and workers are ready to fix 1 and 2
* Use `eventually`  to wait until the application is registered with master to fix 3
* Use `askWithRetry[MasterStateResponse](RequestMasterState)` to get the application info to fix 4

Author: zsxwing <zsxwing@gmail.com>

Closes #8914 from zsxwing/fix-StandaloneDynamicAllocationSuite.
2015-09-29 11:53:28 -07:00
Matei Zaharia 21fd12cb17 [SPARK-9852] Let reduce tasks fetch multiple map output partitions
This makes two changes:

- Allow reduce tasks to fetch multiple map output partitions -- this is a pretty small change to HashShuffleFetcher
- Move shuffle locality computation out of DAGScheduler and into ShuffledRDD / MapOutputTracker; this was needed because the code in DAGScheduler wouldn't work for RDDs that fetch multiple map output partitions from each reduce task

I also added an AdaptiveSchedulingSuite that creates RDDs depending on multiple map output partitions.

Author: Matei Zaharia <matei@databricks.com>

Closes #8844 from mateiz/spark-9852.
2015-09-24 23:39:04 -04:00
Josh Rosen 8023242e77 [SPARK-10761] Refactor DiskBlockObjectWriter to not require BlockId
The DiskBlockObjectWriter constructor took a BlockId parameter but never used it. As part of some general cleanup in these interfaces, this patch refactors its constructor to eliminate this parameter.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #8871 from JoshRosen/disk-block-object-writer-blockid-cleanup.
2015-09-24 14:18:33 -07:00
Xiangrui Meng 02144d6745 Revert "[SPARK-6028][Core]A new RPC implemetation based on the network module"
This reverts commit 084e4e1262.
2015-09-24 08:25:44 -07:00
zsxwing 084e4e1262 [SPARK-6028][Core]A new RPC implemetation based on the network module
Design doc: https://docs.google.com/document/d/1CF5G6rGVQMKSyV_QKo4D2M-x6rxz5x1Ew7aK3Uq6u8c/edit?usp=sharing

Author: zsxwing <zsxwing@gmail.com>

Closes #6457 from zsxwing/new-rpc.
2015-09-23 18:59:49 -07:00
Tathagata Das 5548a25475 [SPARK-10652] [SPARK-10742] [STREAMING] Set meaningful job descriptions for all streaming jobs
Here is the screenshot after adding the job descriptions to threads that run receivers and the scheduler thread running the batch jobs.

## All jobs page
* Added job descriptions with links to relevant batch details page
![image](https://cloud.githubusercontent.com/assets/663212/9924165/cda4a372-5cb1-11e5-91ca-d43a32c699e9.png)

## All stages page
* Added stage descriptions with links to relevant batch details page
![image](https://cloud.githubusercontent.com/assets/663212/9923814/2cce266a-5cae-11e5-8a3f-dad84d06c50e.png)

## Streaming batch details page
* Added the +details link
![image](https://cloud.githubusercontent.com/assets/663212/9921977/24014a32-5c98-11e5-958e-457b6c38065b.png)

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #8791 from tdas/SPARK-10652.
2015-09-22 22:44:09 -07:00
Andrew Or 61d4c07f4b [SPARK-10640] History server fails to parse TaskCommitDenied
... simply because the code is missing!

Author: Andrew Or <andrew@databricks.com>

Closes #8828 from andrewor14/task-end-reason-json.
2015-09-22 16:35:43 -07:00
Josh Rosen 1ca5e2e0b8 [SPARK-10704] Rename HashShuffleReader to BlockStoreShuffleReader
The current shuffle code has an interface named ShuffleReader with only one implementation, HashShuffleReader. This naming is confusing, since the same read path code is used for both sort- and hash-based shuffle. This patch addresses this by renaming HashShuffleReader to BlockStoreShuffleReader.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #8825 from JoshRosen/shuffle-reader-cleanup.
2015-09-22 11:50:22 -07:00
Tathagata Das 72869883f1 [SPARK-10649] [STREAMING] Prevent inheriting job group and irrelevant job description in streaming jobs
The job group, and job descriptions information is passed through thread local properties, and get inherited by child threads. In case of spark streaming, the streaming jobs inherit these properties from the thread that called streamingContext.start(). This may not make sense.

1. Job group: This is mainly used for cancelling a group of jobs together. It does not make sense to cancel streaming jobs like this, as the effect will be unpredictable. And its not a valid usecase any way, to cancel a streaming context, call streamingContext.stop()

2. Job description: This is used to pass on nice text descriptions for jobs to show up in the UI. The job description of the thread that calls streamingContext.start() is not useful for all the streaming jobs, as it does not make sense for all of the streaming jobs to have the same description, and the description may or may not be related to streaming.

The solution in this PR is meant for the Spark master branch, where local properties are inherited by cloning the properties. The job group and job description in the thread that starts the streaming scheduler are explicitly removed, so that all the subsequent child threads does not inherit them. Also, the starting is done in a new child thread, so that setting the job group and description for streaming, does not change those properties in the thread that called streamingContext.start().

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #8781 from tdas/SPARK-10649.
2015-09-21 16:47:52 -07:00
hushan[胡珊] b78c65b03a [SPARK-5259] [CORE] don't submit stage until its dependencies map outputs are registered
Track pending tasks by partition ID instead of Task objects.

Before this change, failure & retry could result in a case where a stage got submitted before the map output from its dependencies get registered.  This was due to an error in the condition for registering map outputs.

Author: hushan[胡珊] <hushan@xiaomi.com>
Author: Imran Rashid <irashid@cloudera.com>

Closes #7699 from squito/SPARK-5259.
2015-09-21 14:26:15 -05:00