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837 commits

Author SHA1 Message Date
Gengliang Wang a717d219a6 [SPARK-30159][SQL][TESTS] Fix the method calls of QueryTest.checkAnswer
### What changes were proposed in this pull request?

Before this PR, the method `checkAnswer` in Object `QueryTest` returns an optional string. It doesn't throw exceptions when errors happen.
The actual exceptions are thrown in the trait `QueryTest`.

However, there are some test suites(`StreamSuite`, `SessionStateSuite`, `BinaryFileFormatSuite`, etc.) that use the no-op method `QueryTest.checkAnswer` and expect it to fail test cases when the execution results don't match the expected answers.

After this PR:
1. the method `checkAnswer` in Object `QueryTest` will fail tests on errors or unexpected results.
2. add a new method `getErrorMessageInCheckAnswer`, which is exactly the same as the previous version of `checkAnswer`. There are some test suites use this one to customize the test failure message.
3. for the test suites that extend the trait `QueryTest`, we should use the method `checkAnswer` directly, instead of calling the method from Object `QueryTest`.

### Why are the changes needed?

We should fix these method calls to perform actual validations in test suites.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Existing unit tests.

Closes #26788 from gengliangwang/fixCheckAnswer.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2019-12-09 22:19:08 +09:00
angerszhu da27f91560 [SPARK-29957][TEST] Reset MiniKDC's default enctypes to fit jdk8/jdk11
### What changes were proposed in this pull request?

Hadoop jira: https://issues.apache.org/jira/browse/HADOOP-12911
In this jira, the author said to replace origin Apache Directory project which is not maintained (but not said it won't work well in jdk11) to Apache Kerby which is java binding(fit java version).

And in Flink: https://github.com/apache/flink/pull/9622
Author show the reason why hadoop-2.7.2's  `MminiKdc` failed with jdk11.
Because new encryption types of `es128-cts-hmac-sha256-128` and `aes256-cts-hmac-sha384-192` (for Kerberos 5) enabled by default were added in Java 11.
Spark with `hadoop-2.7's MiniKdc`does not support these encryption types and does not work well when these encryption types are enabled, which results in the authentication failure.

And when I test hadoop-2.7.2's minikdc in local, the kerberos 's debug error message is  read message stream failed, message can't match.

### Why are the changes needed?
Support jdk11 with hadoop-2.7

### Does this PR introduce any user-facing change?
NO

### How was this patch tested?
Existed UT

Closes #26594 from AngersZhuuuu/minikdc-3.2.0.

Lead-authored-by: angerszhu <angers.zhu@gmail.com>
Co-authored-by: AngersZhuuuu <angers.zhu@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-12-05 23:12:45 -08:00
Ximo Guanter 54c5087a3a [SPARK-29248][SQL] provider number of partitions when creating v2 data writer factory
### What changes were proposed in this pull request?
When implementing a ScanBuilder, we require the implementor to provide the schema of the data and the number of partitions.

However, when someone is implementing WriteBuilder we only pass them the schema, but not the number of partitions. This is an asymetrical developer experience.

This PR adds a PhysicalWriteInfo interface that is passed to createBatchWriterFactory and createStreamingWriterFactory that adds the number of partitions of the data that is going to be written.

### Why are the changes needed?
Passing in the number of partitions on the WriteBuilder would enable data sources to provision their write targets before starting to write. For example:

it could be used to provision a Kafka topic with a specific number of partitions
it could be used to scale a microservice prior to sending the data to it
it could be used to create a DsV2 that sends the data to another spark cluster (currently not possible since the reader wouldn't be able to know the number of partitions)
### Does this PR introduce any user-facing change?
No

### How was this patch tested?
Tests passed

Closes #26591 from edrevo/temp.

Authored-by: Ximo Guanter <joaquin.guantergonzalbez@telefonica.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-11-22 00:19:25 +08:00
Sean Owen 1febd373ea [MINOR][TESTS] Replace JVM assert with JUnit Assert in tests
### What changes were proposed in this pull request?

Use JUnit assertions in tests uniformly, not JVM assert() statements.

### Why are the changes needed?

assert() statements do not produce as useful errors when they fail, and, if they were somehow disabled, would fail to test anything.

### Does this PR introduce any user-facing change?

No. The assertion logic should be identical.

### How was this patch tested?

Existing tests.

Closes #26581 from srowen/assertToJUnit.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-11-20 14:04:15 -06:00
shivsood a834dba120 Revert "[SPARK-29644][SQL] Corrected ShortType and ByteType mapping to SmallInt and TinyInt in JDBCUtils
This reverts commit f7e53865 i.e PR #26301 from master

Closes #26583 from shivsood/revert_29644_master.

Authored-by: shivsood <shivsood@microsoft.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-11-18 18:44:16 -08:00
shivsood 32d44b1d0e [SPARK-29644][SQL] Corrected ShortType and ByteType mapping to SmallInt and TinyInt in JDBCUtils
### What changes were proposed in this pull request?
Corrected ShortType and ByteType mapping to SmallInt and TinyInt, corrected setter methods to set ShortType and ByteType  as setShort() and setByte(). Changes in JDBCUtils.scala
Fixed Unit test cases to where applicable and added new E2E test cases in to test table read/write using ShortType and ByteType.

#### Problems

- In master in JDBCUtils.scala line number 547 and 551 have a problem where ShortType and ByteType are set as Integers rather than set as Short and Byte respectively.
```
case ShortType =>
(stmt: PreparedStatement, row: Row, pos: Int) =>
stmt.setInt(pos + 1, row.getShort(pos))
The issue was pointed out by maropu

case ByteType =>
(stmt: PreparedStatement, row: Row, pos: Int) =>
 stmt.setInt(pos + 1, row.getByte(pos))
```

- Also at line JDBCUtils.scala 247 TinyInt is interpreted wrongly as IntergetType in getCatalystType()

``` case java.sql.Types.TINYINT       => IntegerType ```

- At line 172 ShortType was wrongly interpreted as IntegerType
``` case ShortType => Option(JdbcType("INTEGER", java.sql.Types.SMALLINT)) ```

- All thru out tests, ShortType and ByteType were being interpreted as IntegerTypes.

### Why are the changes needed?
A given type should be set using the right type.

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
Corrected Unit test cases where applicable. Validated in CI/CD
Added a test case in MsSqlServerIntegrationSuite.scala, PostgresIntegrationSuite.scala , MySQLIntegrationSuite.scala to write/read tables from dataframe with cols as shorttype and bytetype. Validated by manual as follows.
```
./build/mvn install -DskipTests
./build/mvn test -Pdocker-integration-tests -pl :spark-docker-integration-tests_2.12
```

Closes #26301 from shivsood/shorttype_fix_maropu.

Authored-by: shivsood <shivsood@microsoft.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-11-13 17:56:13 -08:00
Gabor Somogyi 3641c3dd69 [SPARK-21869][SS] Apply Apache Commons Pool to Kafka producer
### What changes were proposed in this pull request?

Kafka producers are now closed when `spark.kafka.producer.cache.timeout` reached which could be significant problem when processing big SQL queries. The workaround was to increase `spark.kafka.producer.cache.timeout` to a number where the biggest SQL query can be finished.

In this PR I've adapted similar solution which already exists on the consumer side, namely applies Apache Commons Pool on the producer side as well. Main advantages choosing this solution:
* Producers are not closed until they're in use
* No manual reference counting needed (which may be error prone)
* Thread-safe by design
* Provides jmx connection to the pool where metrics can be fetched

What this PR contains:
* Introduced producer side parameters to configure pool
* Renamed `InternalKafkaConsumerPool` to `InternalKafkaConnectorPool` and made it abstract
* Created 2 implementations from it: `InternalKafkaConsumerPool` and `InternalKafkaProducerPool`
* Adapted `CachedKafkaProducer` to use `InternalKafkaProducerPool`
* Changed `KafkaDataWriter` and `KafkaDataWriteTask` to release producer even in failure scenario
* Added several new tests
* Extended `KafkaTest` to clear not only producers but consumers as well
* Renamed `InternalKafkaConsumerPoolSuite` to `InternalKafkaConnectorPoolSuite` where only consumer tests are checking the behavior (please see comment for reasoning)

What this PR not yet contains(but intended when the main concept is stable):
* User facing documentation

### Why are the changes needed?
Kafka producer closed after 10 minutes (with default settings).

### Does this PR introduce any user-facing change?
No.

### How was this patch tested?
Existing + additional unit tests.
Cluster tests being started.

Closes #25853 from gaborgsomogyi/SPARK-21869.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-11-07 17:06:32 -08:00
Kent Yao 9562b26914 [SPARK-29757][SQL] Move calendar interval constants together
### What changes were proposed in this pull request?
```java
  public static final int YEARS_PER_DECADE = 10;
  public static final int YEARS_PER_CENTURY = 100;
  public static final int YEARS_PER_MILLENNIUM = 1000;

  public static final byte MONTHS_PER_QUARTER = 3;
  public static final int MONTHS_PER_YEAR = 12;

  public static final byte DAYS_PER_WEEK = 7;
  public static final long DAYS_PER_MONTH = 30L;

  public static final long HOURS_PER_DAY = 24L;

  public static final long MINUTES_PER_HOUR = 60L;

  public static final long SECONDS_PER_MINUTE = 60L;
  public static final long SECONDS_PER_HOUR = MINUTES_PER_HOUR * SECONDS_PER_MINUTE;
  public static final long SECONDS_PER_DAY = HOURS_PER_DAY * SECONDS_PER_HOUR;

  public static final long MILLIS_PER_SECOND = 1000L;
  public static final long MILLIS_PER_MINUTE = SECONDS_PER_MINUTE * MILLIS_PER_SECOND;
  public static final long MILLIS_PER_HOUR = MINUTES_PER_HOUR * MILLIS_PER_MINUTE;
  public static final long MILLIS_PER_DAY = HOURS_PER_DAY * MILLIS_PER_HOUR;

  public static final long MICROS_PER_MILLIS = 1000L;
  public static final long MICROS_PER_SECOND = MILLIS_PER_SECOND * MICROS_PER_MILLIS;
  public static final long MICROS_PER_MINUTE = SECONDS_PER_MINUTE * MICROS_PER_SECOND;
  public static final long MICROS_PER_HOUR = MINUTES_PER_HOUR * MICROS_PER_MINUTE;
  public static final long MICROS_PER_DAY = HOURS_PER_DAY * MICROS_PER_HOUR;
  public static final long MICROS_PER_MONTH = DAYS_PER_MONTH * MICROS_PER_DAY;
  /* 365.25 days per year assumes leap year every four years */
  public static final long MICROS_PER_YEAR = (36525L * MICROS_PER_DAY) / 100;

  public static final long NANOS_PER_MICROS = 1000L;
  public static final long NANOS_PER_MILLIS = MICROS_PER_MILLIS * NANOS_PER_MICROS;
  public static final long NANOS_PER_SECOND = MILLIS_PER_SECOND * NANOS_PER_MILLIS;
```
The above parameters are defined in IntervalUtils, DateTimeUtils, and CalendarInterval, some of them are redundant, some of them are cross-referenced.

### Why are the changes needed?
To simplify code, enhance consistency and reduce risks

### Does this PR introduce any user-facing change?

no
### How was this patch tested?

modified uts

Closes #26399 from yaooqinn/SPARK-29757.

Authored-by: Kent Yao <yaooqinn@hotmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-11-07 19:48:19 +08:00
Jungtaek Lim (HeartSaVioR) 252ecd333f [SPARK-29635][SS] Extract base test suites between Kafka micro-batch sink and Kafka continuous sink
### What changes were proposed in this pull request?

This patch leverages V2 continuous memory stream to extract tests from Kafka micro-batch sink suite and continuous sink suite and deduplicate them. These tests are basically doing the same, except how to run and verify the result.

### Why are the changes needed?

We no longer have same tests spotted on two places - brings 300 lines deletion.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Existing UTs.

Closes #26292 from HeartSaVioR/SPARK-29635.

Authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan.opensource@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-11-06 17:08:42 -08:00
Sean Owen 19b8c71436 [SPARK-29674][CORE] Update dropwizard metrics to 4.1.x for JDK 9+
### What changes were proposed in this pull request?

Update the version of dropwizard metrics that Spark uses for metrics to 4.1.x, from 3.2.x.

### Why are the changes needed?

This helps JDK 9+ support, per for example https://github.com/dropwizard/metrics/pull/1236

### Does this PR introduce any user-facing change?

No, although downstream users with custom metrics may be affected.

### How was this patch tested?

Existing tests.

Closes #26332 from srowen/SPARK-29674.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-11-03 15:13:06 -08:00
dengziming 28ccd31aee [SPARK-29611][WEBUI] Sort Kafka metadata by the number of messages
### What changes were proposed in this pull request?

Sort metadata by the number of messages in each Kafka partition

### Why are the changes needed?

help to find the data skewness problem.

### Does this PR introduce any user-facing change?

Yes, add a column count to the metadata and sort by count
![image](https://user-images.githubusercontent.com/26023240/67617886-63e06800-f81a-11e9-8718-be3a0100952e.png)

If you set `minPartitions` configurations with structure structured-streaming which doesn't have the Streaming page, my code changes in `DirectKafkaInputDStream` won't affect the WEB UI page just as it shows in the follow image

![image](https://user-images.githubusercontent.com/26023240/68020762-79520800-fcda-11e9-96cd-f0c64a36f505.png)

### How was this patch tested?

Manual test

Closes #26266 from dengziming/feature_ui_optimize.

Lead-authored-by: dengziming <dengziming@growingio.com>
Co-authored-by: dengziming <swzmdeng@163.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-11-01 22:46:34 -07:00
Xingbo Jiang 8207c835b4 Revert "Prepare Spark release v3.0.0-preview-rc2"
This reverts commit 007c873ae3.
2019-10-30 17:45:44 -07:00
Xingbo Jiang 007c873ae3 Prepare Spark release v3.0.0-preview-rc2
### What changes were proposed in this pull request?

To push the built jars to maven release repository, we need to remove the 'SNAPSHOT' tag from the version name.

Made the following changes in this PR:
* Update all the `3.0.0-SNAPSHOT` version name to `3.0.0-preview`
* Update the sparkR version number check logic to allow jvm version like `3.0.0-preview`

**Please note those changes were generated by the release script in the past, but this time since we manually add tags on master branch, we need to manually apply those changes too.**

We shall revert the changes after 3.0.0-preview release passed.

### Why are the changes needed?

To make the maven release repository to accept the built jars.

### Does this PR introduce any user-facing change?

No

### How was this patch tested?

N/A
2019-10-30 17:42:59 -07:00
Xingbo Jiang b33a58c0c6 Revert "Prepare Spark release v3.0.0-preview-rc1"
This reverts commit 5eddbb5f1d.
2019-10-28 22:32:34 -07:00
Xingbo Jiang 5eddbb5f1d Prepare Spark release v3.0.0-preview-rc1
### What changes were proposed in this pull request?

To push the built jars to maven release repository, we need to remove the 'SNAPSHOT' tag from the version name.

Made the following changes in this PR:
* Update all the `3.0.0-SNAPSHOT` version name to `3.0.0-preview`
* Update the PySpark version from `3.0.0.dev0` to `3.0.0`

**Please note those changes were generated by the release script in the past, but this time since we manually add tags on master branch, we need to manually apply those changes too.**

We shall revert the changes after 3.0.0-preview release passed.

### Why are the changes needed?

To make the maven release repository to accept the built jars.

### Does this PR introduce any user-facing change?

No

### How was this patch tested?

N/A

Closes #26243 from jiangxb1987/3.0.0-preview-prepare.

Lead-authored-by: Xingbo Jiang <xingbo.jiang@databricks.com>
Co-authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: Xingbo Jiang <xingbo.jiang@databricks.com>
2019-10-28 22:31:29 -07:00
Jungtaek Lim (HeartSaVioR) 762db39c15 [SPARK-29509][SQL][SS] Deduplicate codes from Kafka data source
### What changes were proposed in this pull request?

This patch deduplicates code blocks in Kafka data source which are being repeated multiple times in a method.

### Why are the changes needed?

This change would simplify the code and open possibility to simplify future code whenever fields are added to Kafka writer schema.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Existing UTs.

Closes #26158 from HeartSaVioR/MINOR-deduplicate-kafka-source.

Authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan.opensource@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-10-28 11:14:18 -07:00
Gabor Somogyi 25493919f8 [SPARK-29580][TESTS] Add kerberos debug messages for Kafka secure tests
### What changes were proposed in this pull request?
`org.apache.spark.sql.kafka010.KafkaDelegationTokenSuite` failed lately. After had a look at the logs it just shows the following fact without any details:
```
Caused by: sbt.ForkMain$ForkError: sun.security.krb5.KrbException: Server not found in Kerberos database (7) - Server not found in Kerberos database
```
Since the issue is intermittent and not able to reproduce it we should add more debug information and wait for reproduction with the extended logs.

### Why are the changes needed?
Failing test doesn't give enough debug information.

### Does this PR introduce any user-facing change?
No.

### How was this patch tested?
I've started the test manually and checked that such additional debug messages show up:
```
>>> KrbApReq: APOptions are 00000000 00000000 00000000 00000000
>>> EType: sun.security.krb5.internal.crypto.Aes128CtsHmacSha1EType
Looking for keys for: kafka/localhostEXAMPLE.COM
Added key: 17version: 0
Added key: 23version: 0
Added key: 16version: 0
Found unsupported keytype (3) for kafka/localhostEXAMPLE.COM
>>> EType: sun.security.krb5.internal.crypto.Aes128CtsHmacSha1EType
Using builtin default etypes for permitted_enctypes
default etypes for permitted_enctypes: 17 16 23.
>>> EType: sun.security.krb5.internal.crypto.Aes128CtsHmacSha1EType
MemoryCache: add 1571936500/174770/16C565221B70AAB2BEFE31A83D13A2F4/client/localhostEXAMPLE.COM to client/localhostEXAMPLE.COM|kafka/localhostEXAMPLE.COM
MemoryCache: Existing AuthList:
#3: 1571936493/200803/8CD70D280B0862C5DA1FF901ECAD39FE/client/localhostEXAMPLE.COM
#2: 1571936499/985009/BAD33290D079DD4E3579A8686EC326B7/client/localhostEXAMPLE.COM
#1: 1571936499/995208/B76B9D78A9BE283AC78340157107FD40/client/localhostEXAMPLE.COM
```

Closes #26252 from gaborgsomogyi/SPARK-29580.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-10-25 14:11:35 -07:00
redsk 8bd8f492ea [SPARK-29500][SQL][SS] Support partition column when writing to Kafka
### What changes were proposed in this pull request?
https://issues.apache.org/jira/browse/SPARK-29500

`KafkaRowWriter` now supports setting the Kafka partition by reading a "partition" column in the input dataframe.

Code changes in commit nr. 1.
Test changes in commit nr. 2.
Doc changes in commit nr. 3.

tcondie dongjinleekr srowen

### Why are the changes needed?
While it is possible to configure a custom Kafka Partitioner with
`.option("kafka.partitioner.class", "my.custom.Partitioner")`, this is not enough for certain use cases. See the Jira issue.

### Does this PR introduce any user-facing change?
No, as this behaviour is optional.

### How was this patch tested?
Two new UT were added and one was updated.

Closes #26153 from redsk/feature/SPARK-29500.

Authored-by: redsk <nicola.bova@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-10-25 08:06:36 -05:00
Dongjoon Hyun 7ecf968527 [SPARK-29567][TESTS] Update JDBC Integration Test Docker Images
### What changes were proposed in this pull request?

This PR updates JDBC Integration Test DBMS Docker Images.

| DBMS | Docker Image Tag | Release |
| ------ | ------------------ | ------ |
| MySQL | mysql:5.7.28 | Oct 13, 2019 |
| PostgreSQL | postgres:12.0-alpine | Oct 3, 2019 |

* For `MySQL`, `SET GLOBAL sql_mode = ''` is added to disable all strict modes because `test("Basic write test")` creates a table like the following. The latest MySQL rejects `0000-00-00 00:00:00` as TIMESTAMP and causes the test case failure.
```
mysql> desc datescopy;
+-------+-----------+------+-----+---------------------+-----------------------------+
| Field | Type      | Null | Key | Default             | Extra                       |
+-------+-----------+------+-----+---------------------+-----------------------------+
| d     | date      | YES  |     | NULL                |                             |
| t     | timestamp | NO   |     | CURRENT_TIMESTAMP   | on update CURRENT_TIMESTAMP |
| dt    | timestamp | NO   |     | 0000-00-00 00:00:00 |                             |
| ts    | timestamp | NO   |     | 0000-00-00 00:00:00 |                             |
| yr    | date      | YES  |     | NULL                |                             |
+-------+-----------+------+-----+---------------------+-----------------------------+
```
* For `PostgreSQL`, I chose the smallest image in `12` releases. It reduces the image size a lot, `312MB` -> `72.8MB`. This is good for CI/CI testing environment.
```
$ docker images | grep postgres
postgres      12.0-alpine          5b681acb1cfc        2 days ago          72.8MB
postgres      11.4                 53912975086f        3 months ago        312MB
```

Note that
- For `MsSqlServer`, we are using `2017-GA-ubuntu` and the next version `2019-CTP3.2-ubuntu` is still `Community Technology Preview` status.
- For `DB2` and `Oracle`, the official images are not available.

### Why are the changes needed?

This is to make it sure we are testing with the latest DBMS images during preparing `3.0.0`.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Since this is the integration test, we need to run this manually.
```
build/mvn install -DskipTests
build/mvn -Pdocker-integration-tests -pl :spark-docker-integration-tests_2.12 test
```

Closes #26224 from dongjoon-hyun/SPARK-29567.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-10-23 16:44:10 -07:00
Dongjoon Hyun 8c3469009c [SPARK-29546][TESTS] Recover jersey-guava test dependency in docker-integration-tests
### What changes were proposed in this pull request?

Currently, `docker-integration-tests` is broken in both JDK8/11.
This PR aims to recover JDBC integration test for JDK8/11.

### Why are the changes needed?

While SPARK-28737 upgraded `Jersey` to 2.29 for JDK11, `docker-integration-tests` is broken because `com.spotify.docker-client` still depends on `jersey-guava`. The latest `com.spotify.docker-client` also has this problem.

- https://mvnrepository.com/artifact/com.spotify/docker-client/5.0.2
  -> https://mvnrepository.com/artifact/org.glassfish.jersey.core/jersey-client/2.19
    -> https://mvnrepository.com/artifact/org.glassfish.jersey.core/jersey-common/2.19
      -> https://mvnrepository.com/artifact/org.glassfish.jersey.bundles.repackaged/jersey-guava/2.19

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Manual because this is an integration test suite.

```
$ java -version
openjdk version "1.8.0_222"
OpenJDK Runtime Environment (AdoptOpenJDK)(build 1.8.0_222-b10)
OpenJDK 64-Bit Server VM (AdoptOpenJDK)(build 25.222-b10, mixed mode)

$ build/mvn install -DskipTests

$ build/mvn -Pdocker-integration-tests -pl :spark-docker-integration-tests_2.12 test
```

```
$ java -version
openjdk version "11.0.5" 2019-10-15
OpenJDK Runtime Environment AdoptOpenJDK (build 11.0.5+10)
OpenJDK 64-Bit Server VM AdoptOpenJDK (build 11.0.5+10, mixed mode)

$ build/mvn install -DskipTests

$ build/mvn -Pdocker-integration-tests -pl :spark-docker-integration-tests_2.12 test
```

**BEFORE**
```
*** RUN ABORTED ***
  com.spotify.docker.client.exceptions.DockerException: java.util.concurrent.ExecutionException: javax.ws.rs.ProcessingException: java.lang.NoClassDefFoundError: jersey/repackaged/com/google/common/util/concurrent/MoreExecutors
  at com.spotify.docker.client.DefaultDockerClient.propagate(DefaultDockerClient.java:1607)
  at com.spotify.docker.client.DefaultDockerClient.request(DefaultDockerClient.java:1538)
  at com.spotify.docker.client.DefaultDockerClient.ping(DefaultDockerClient.java:387)
  at org.apache.spark.sql.jdbc.DockerJDBCIntegrationSuite.beforeAll(DockerJDBCIntegrationSuite.scala:81)
```

**AFTER**
```
Run completed in 47 seconds, 999 milliseconds.
Total number of tests run: 30
Suites: completed 6, aborted 0
Tests: succeeded 30, failed 0, canceled 0, ignored 6, pending 0
All tests passed.
```

Closes #26203 from dongjoon-hyun/SPARK-29546.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-10-23 00:14:43 -07:00
Sean Owen 2d871ad0e7 [SPARK-29392][CORE][SQL][STREAMING] Remove symbol literal syntax 'foo, deprecated in Scala 2.13, in favor of Symbol("foo")
### What changes were proposed in this pull request?

Syntax like `'foo` is deprecated in Scala 2.13. Replace usages with `Symbol("foo")`

### Why are the changes needed?

Avoids ~50 deprecation warnings when attempting to build with 2.13.

### Does this PR introduce any user-facing change?

None, should be no functional change at all.

### How was this patch tested?

Existing tests.

Closes #26061 from srowen/SPARK-29392.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-10-08 20:15:37 -07:00
Gabor Somogyi 6b5e0e2469 [SPARK-29054][SS] Invalidate Kafka consumer when new delegation token available
### What changes were proposed in this pull request?
Kafka consumers are cached. If delegation token is used and the token is expired, then exception is thrown. Such case new consumer is created in a Task retry with the latest delegation token. This can be enhanced by detecting the existence of a new delegation token. In this PR I'm detecting whether the token in the consumer is the same as the latest stored in the `UGI` (`targetServersRegex` must match not to create a consumer with another cluster's token).

### Why are the changes needed?
It would be good to avoid Task retry to pick up the latest delegation token.

### Does this PR introduce any user-facing change?
No.

### How was this patch tested?
Existing + new unit tests.
Additionally executed the following code snippet to measure `ensureConsumerHasLatestToken` time consumption:
```
    val startTimeNs = System.nanoTime()
    for (i <- 0 until 10000) {
      consumer.ensureConsumerHasLatestToken()
    }
    logInfo(s"It took ${TimeUnit.NANOSECONDS.toMillis(System.nanoTime() - startTimeNs)} ms" +
      " to call ensureConsumerHasLatestToken 10000 times")
```

And here are the results:
```
19/09/11 14:58:22 INFO KafkaDataConsumerSuite: It took 1058 ms to call ensureConsumerHasLatestToken 10000 times
...
19/09/11 14:58:23 INFO KafkaDataConsumerSuite: It took 780 ms to call ensureConsumerHasLatestToken 10000 times
...
19/09/11 15:12:11 INFO KafkaDataConsumerSuite: It took 1032 ms to call ensureConsumerHasLatestToken 10000 times
...
19/09/11 15:12:11 INFO KafkaDataConsumerSuite: It took 679 ms to call ensureConsumerHasLatestToken 10000 times
```

Closes #25760 from gaborgsomogyi/SPARK-29054.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-10-03 09:34:31 -07:00
Dongjoon Hyun bd031c2173 [SPARK-29307][BUILD][TESTS] Remove scalatest deprecation warnings
### What changes were proposed in this pull request?

This PR aims to remove `scalatest` deprecation warnings with the following changes.
- `org.scalatest.mockito.MockitoSugar` -> `org.scalatestplus.mockito.MockitoSugar`
- `org.scalatest.selenium.WebBrowser` -> `org.scalatestplus.selenium.WebBrowser`
- `org.scalatest.prop.Checkers` -> `org.scalatestplus.scalacheck.Checkers`
- `org.scalatest.prop.GeneratorDrivenPropertyChecks` -> `org.scalatestplus.scalacheck.ScalaCheckDrivenPropertyChecks`

### Why are the changes needed?

According to the Jenkins logs, there are 118 warnings about this.
```
 grep "is deprecated" ~/consoleText | grep scalatest | wc -l
     118
```

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

After Jenkins passes, we need to check the Jenkins log.

Closes #25982 from dongjoon-hyun/SPARK-29307.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-09-30 21:00:11 -07:00
Dongjoon Hyun a0b3d7a323 [SPARK-29300][TESTS] Compare catalyst and avro module benchmark in JDK8/11
### What changes were proposed in this pull request?

This PR regenerate the benchmark results in `catalyst` and `avro` module in order to compare JDK8/JDK11 result.

### Why are the changes needed?

This PR aims to verify that there is no regression on JDK11.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

This is a test-only update. We need to run the benchmark manually.

Closes #25972 from dongjoon-hyun/SPARK-29300.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-09-30 17:59:43 -07:00
Sean Owen e1ea806b30 [SPARK-29291][CORE][SQL][STREAMING][MLLIB] Change procedure-like declaration to function + Unit for 2.13
### What changes were proposed in this pull request?

Scala 2.13 emits a deprecation warning for procedure-like declarations:

```
def foo() {
 ...
```

This is equivalent to the following, so should be changed to avoid a warning:

```
def foo(): Unit = {
  ...
```

### Why are the changes needed?

It will avoid about a thousand compiler warnings when we start to support Scala 2.13. I wanted to make the change in 3.0 as there are less likely to be back-ports from 3.0 to 2.4 than 3.1 to 3.0, for example, minimizing that downside to touching so many files.

Unfortunately, that makes this quite a big change.

### Does this PR introduce any user-facing change?

No behavior change at all.

### How was this patch tested?

Existing tests.

Closes #25968 from srowen/SPARK-29291.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-09-30 10:03:23 -07:00
Jungtaek Lim (HeartSaVioR) d3679a9782 [SPARK-27748][SS][FOLLOWUP] Correct the order of logging token as debug log
### What changes were proposed in this pull request?

This patch fixes the order of elements while logging token. Header columns are printed as

```
"TOKENID", "HMAC", "OWNER", "RENEWERS", "ISSUEDATE", "EXPIRYDATE", "MAXDATE"
```

whereas the code prints out actual information as

```
"HMAC"(redacted), "TOKENID", "OWNER", "RENEWERS", "ISSUEDATE", "EXPIRYDATE", "MAXDATE"
```

This patch fixes this.

### Why are the changes needed?

Not critical but it doesn't line up with header columns.

### Does this PR introduce any user-facing change?

No

### How was this patch tested?

N/A, as it's only logged as debug and it's obvious what/where is the problem and how it can be fixed.

Closes #25935 from HeartSaVioR/SPARK-27748-FOLLOWUP.

Authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-09-26 08:32:03 -07:00
Burak Yavuz c8159c7941 [SPARK-29197][SQL] Remove saveModeForDSV2 from DataFrameWriter
### What changes were proposed in this pull request?

It is very confusing that the default save mode is different between the internal implementation of a Data source. The reason that we had to have saveModeForDSV2 was that there was no easy way to check the existence of a Table in DataSource v2. Now, we have catalogs for that. Therefore we should be able to remove the different save modes. We also have a plan forward for `save`, where we can't really check the existence of a table, and therefore create one. That will come in a future PR.

### Why are the changes needed?

Because it is confusing that the internal implementation of a data source (which is generally non-obvious to users) decides which default save mode is used within Spark.

### Does this PR introduce any user-facing change?

It changes the default save mode for V2 Tables in the DataFrameWriter APIs

### How was this patch tested?

Existing tests

Closes #25876 from brkyvz/removeSM.

Lead-authored-by: Burak Yavuz <brkyvz@gmail.com>
Co-authored-by: Burak Yavuz <burak@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-09-26 15:20:04 +08:00
Jungtaek Lim (HeartSaVioR) 4513f1c0dc [SPARK-26848][SQL][SS] Introduce new option to Kafka source: offset by timestamp (starting/ending)
## What changes were proposed in this pull request?

This patch introduces new options "startingOffsetsByTimestamp" and "endingOffsetsByTimestamp" to set specific timestamp per topic (since we're unlikely to set the different value per partition) to let source starts reading from offsets which have equal of greater timestamp, and ends reading until offsets which have equal of greater timestamp.

The new option would be optional of course, and take preference over existing offset options.

## How was this patch tested?

New unit tests added. Also manually tested basic functionality with Kafka 2.0.0 server.

Running query below

```
val df = spark.read.format("kafka")
  .option("kafka.bootstrap.servers", "localhost:9092")
  .option("subscribe", "spark_26848_test_v1,spark_26848_test_2_v1")
  .option("startingOffsetsByTimestamp", """{"spark_26848_test_v1": 1549669142193, "spark_26848_test_2_v1": 1549669240965}""")
  .option("endingOffsetsByTimestamp", """{"spark_26848_test_v1": 1549669265676, "spark_26848_test_2_v1": 1549699265676}""")
  .load().selectExpr("CAST(value AS STRING)")

df.show()
```

with below records (one string which number part remarks when they're put after such timestamp) in

topic `spark_26848_test_v1`
```
hello1 1549669142193
world1 1549669142193
hellow1 1549669240965
world1 1549669240965
hello1 1549669265676
world1 1549669265676
```

topic `spark_26848_test_2_v1`

```
hello2 1549669142193
world2 1549669142193
hello2 1549669240965
world2 1549669240965
hello2 1549669265676
world2 1549669265676
```

the result of `df.show()` follows:
```
+--------------------+
|               value|
+--------------------+
|world1 1549669240965|
|world1 1549669142193|
|world2 1549669240965|
|hello2 1549669240965|
|hellow1 154966924...|
|hello2 1549669265676|
|hello1 1549669142193|
|world2 1549669265676|
+--------------------+
```

Note that endingOffsets (as well as endingOffsetsByTimestamp) are exclusive.

Closes #23747 from HeartSaVioR/SPARK-26848.

Authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-09-23 19:25:36 -05:00
Maxim Gekk a6a663c437 [SPARK-29141][SQL][TEST] Use SqlBasedBenchmark in SQL benchmarks
### What changes were proposed in this pull request?

Refactored SQL-related benchmark and made them depend on `SqlBasedBenchmark`. In particular, creation of Spark session are moved into `override def getSparkSession: SparkSession`.

### Why are the changes needed?

This should simplify maintenance of SQL-based benchmarks by reducing the number of dependencies. In the future, it should be easier to refactor & extend all SQL benchmarks by changing only one trait. Finally, all SQL-based benchmarks will look uniformly.

### Does this PR introduce any user-facing change?
No

### How was this patch tested?

By running the modified benchmarks.

Closes #25828 from MaxGekk/sql-benchmarks-refactoring.

Lead-authored-by: Maxim Gekk <max.gekk@gmail.com>
Co-authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-09-18 17:52:23 -07:00
Yuming Wang 8c3f27ceb4 [SPARK-28683][BUILD] Upgrade Scala to 2.12.10
## What changes were proposed in this pull request?

This PR upgrade Scala to **2.12.10**.

Release notes:
- Fix regression in large string interpolations with non-String typed splices
- Revert "Generate shallower ASTs in pattern translation"
- Fix regression in classpath when JARs have 'a.b' entries beside 'a/b'

- Faster compiler: 5–10% faster since 2.12.8
- Improved compatibility with JDK 11, 12, and 13
- Experimental support for build pipelining and outline type checking

More details:
https://github.com/scala/scala/releases/tag/v2.12.10
https://github.com/scala/scala/releases/tag/v2.12.9

## How was this patch tested?

Existing tests

Closes #25404 from wangyum/SPARK-28683.

Authored-by: Yuming Wang <yumwang@ebay.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-09-18 13:30:36 -07:00
Gabor Somogyi 71e7516132 [SPARK-29027][TESTS] KafkaDelegationTokenSuite fix when loopback canonical host name differs from localhost
### What changes were proposed in this pull request?
`KafkaDelegationTokenSuite` fails on different platforms with the following problem:
```
19/09/11 11:07:42.690 pool-1-thread-1-SendThread(localhost:44965) DEBUG ZooKeeperSaslClient: creating sasl client: Client=zkclient/localhostEXAMPLE.COM;service=zookeeper;serviceHostname=localhost.localdomain
...
NIOServerCxn.Factory:localhost/127.0.0.1:0: Zookeeper Server failed to create a SaslServer to interact with a client during session initiation:
javax.security.sasl.SaslException: Failure to initialize security context [Caused by GSSException: No valid credentials provided (Mechanism level: Failed to find any Kerberos credentails)]
	at com.sun.security.sasl.gsskerb.GssKrb5Server.<init>(GssKrb5Server.java:125)
	at com.sun.security.sasl.gsskerb.FactoryImpl.createSaslServer(FactoryImpl.java:85)
	at javax.security.sasl.Sasl.createSaslServer(Sasl.java:524)
	at org.apache.zookeeper.util.SecurityUtils$2.run(SecurityUtils.java:233)
	at org.apache.zookeeper.util.SecurityUtils$2.run(SecurityUtils.java:229)
	at java.security.AccessController.doPrivileged(Native Method)
	at javax.security.auth.Subject.doAs(Subject.java:422)
	at org.apache.zookeeper.util.SecurityUtils.createSaslServer(SecurityUtils.java:228)
	at org.apache.zookeeper.server.ZooKeeperSaslServer.createSaslServer(ZooKeeperSaslServer.java:44)
	at org.apache.zookeeper.server.ZooKeeperSaslServer.<init>(ZooKeeperSaslServer.java:38)
	at org.apache.zookeeper.server.NIOServerCnxn.<init>(NIOServerCnxn.java:100)
	at org.apache.zookeeper.server.NIOServerCnxnFactory.createConnection(NIOServerCnxnFactory.java:186)
	at org.apache.zookeeper.server.NIOServerCnxnFactory.run(NIOServerCnxnFactory.java:227)
	at java.lang.Thread.run(Thread.java:748)
Caused by: GSSException: No valid credentials provided (Mechanism level: Failed to find any Kerberos credentails)
	at sun.security.jgss.krb5.Krb5AcceptCredential.getInstance(Krb5AcceptCredential.java:87)
	at sun.security.jgss.krb5.Krb5MechFactory.getCredentialElement(Krb5MechFactory.java:127)
	at sun.security.jgss.GSSManagerImpl.getCredentialElement(GSSManagerImpl.java:193)
	at sun.security.jgss.GSSCredentialImpl.add(GSSCredentialImpl.java:427)
	at sun.security.jgss.GSSCredentialImpl.<init>(GSSCredentialImpl.java:62)
	at sun.security.jgss.GSSManagerImpl.createCredential(GSSManagerImpl.java:154)
	at com.sun.security.sasl.gsskerb.GssKrb5Server.<init>(GssKrb5Server.java:108)
	... 13 more
NIOServerCxn.Factory:localhost/127.0.0.1:0: Client attempting to establish new session at /127.0.0.1:33742
SyncThread:0: Creating new log file: log.1
SyncThread:0: Established session 0x100003736ae0000 with negotiated timeout 10000 for client /127.0.0.1:33742
pool-1-thread-1-SendThread(localhost:35625): Session establishment complete on server localhost/127.0.0.1:35625, sessionid = 0x100003736ae0000, negotiated timeout = 10000
pool-1-thread-1-SendThread(localhost:35625): ClientCnxn:sendSaslPacket:length=0
pool-1-thread-1-SendThread(localhost:35625): saslClient.evaluateChallenge(len=0)
pool-1-thread-1-EventThread: zookeeper state changed (SyncConnected)
NioProcessor-1: No server entry found for kerberos principal name zookeeper/localhost.localdomainEXAMPLE.COM
NioProcessor-1: No server entry found for kerberos principal name zookeeper/localhost.localdomainEXAMPLE.COM
NioProcessor-1: Server not found in Kerberos database (7)
NioProcessor-1: Server not found in Kerberos database (7)
```

The problem reproducible if the `localhost` and `localhost.localdomain` order exhanged:
```
[systestgsomogyi-build spark]$ cat /etc/hosts
127.0.0.1   localhost.localdomain localhost localhost4 localhost4.localdomain4
::1         localhost.localdomain localhost localhost6 localhost6.localdomain6
```

The main problem is that `ZkClient` connects to the canonical loopback address (which is not necessarily `localhost`).

### Why are the changes needed?
`KafkaDelegationTokenSuite` failed in some environments.

### Does this PR introduce any user-facing change?
No.

### How was this patch tested?
Existing unit tests on different platforms.

Closes #25803 from gaborgsomogyi/SPARK-29027.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-09-17 15:30:18 -07:00
Jungtaek Lim (HeartSaVioR) 88c8d5eed2 [SPARK-23539][SS][FOLLOWUP][TESTS] Add UT to ensure existing query doesn't break with default conf of includeHeaders
### What changes were proposed in this pull request?

This patch adds new UT to ensure existing query (before Spark 3.0.0) with checkpoint doesn't break with default configuration of "includeHeaders" being introduced via SPARK-23539.

This patch also modifies existing test which checks type of columns to also check headers column as well.

### Why are the changes needed?

The patch adds missing tests which guarantees backward compatibility of the change of SPARK-23539.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

UT passed.

Closes #25792 from HeartSaVioR/SPARK-23539-FOLLOWUP.

Authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-09-16 15:22:04 -05:00
Lee Dongjin 1675d5114e [SPARK-23539][SS] Add support for Kafka headers in Structured Streaming
## What changes were proposed in this pull request?

This update adds support for Kafka Headers functionality in Structured Streaming.

## How was this patch tested?

With following unit tests:

- KafkaRelationSuite: "default starting and ending offsets with headers" (new)
- KafkaSinkSuite: "batch - write to kafka" (updated)

Closes #22282 from dongjinleekr/feature/SPARK-23539.

Lead-authored-by: Lee Dongjin <dongjin@apache.org>
Co-authored-by: Jungtaek Lim <kabhwan@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-09-13 12:31:28 -05:00
Wenchen Fan 053dd858d3 [SPARK-28998][SQL] reorganize the packages of DS v2 interfaces/classes
### What changes were proposed in this pull request?

reorganize the packages of DS v2 interfaces/classes:
1. `org.spark.sql.connector.catalog`: put `TableCatalog`, `Table` and other related interfaces/classes
2. `org.spark.sql.connector.expression`: put `Expression`, `Transform` and other related interfaces/classes
3. `org.spark.sql.connector.read`: put `ScanBuilder`, `Scan` and other related interfaces/classes
4. `org.spark.sql.connector.write`: put `WriteBuilder`, `BatchWrite` and other related interfaces/classes

### Why are the changes needed?

Data Source V2 has evolved a lot. It's a bit weird that `Expression` is in `org.spark.sql.catalog.v2` and `Table` is in `org.spark.sql.sources.v2`.

### Does this PR introduce any user-facing change?

No

### How was this patch tested?

existing tests

Closes #25700 from cloud-fan/package.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-09-12 19:59:34 +08:00
dengziming 8f632d7045 [MINOR][DOCS] Fix few typos in the java docs
JIRA :https://issues.apache.org/jira/browse/SPARK-29050
'a hdfs' change into  'an hdfs'
'an unique' change into 'a unique'
'an url' change into 'a url'
'a error' change into 'an error'

Closes #25756 from dengziming/feature_fix_typos.

Authored-by: dengziming <dengziming@growingio.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2019-09-12 09:30:03 +09:00
Jungtaek Lim (HeartSaVioR) b62ef8f793 [SPARK-29007][STREAMING][MLLIB][TESTS] Enforce not leaking SparkContext in tests which creates new StreamingContext with new SparkContext
### What changes were proposed in this pull request?

This patch enforces tests to prevent leaking newly created SparkContext while is created via initializing StreamingContext. Leaking SparkContext in test would make most of following tests being failed as well, so this patch applies defensive programming, trying its best to ensure SparkContext is cleaned up.

### Why are the changes needed?

We got some case in CI build where SparkContext is being leaked and other tests are affected by leaked SparkContext. Ideally we should isolate the environment among tests if possible.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Modified UTs.

Closes #25709 from HeartSaVioR/SPARK-29007.

Authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-09-11 10:29:13 -07:00
Gabor Somogyi e516f7e09e [SPARK-28928][SS] Use Kafka delegation token protocol on sources/sinks
### What changes were proposed in this pull request?
At the moment there are 3 places where communication protocol with Kafka cluster has to be set when delegation token used:
* On delegation token
* On source
* On sink

Most of the time users are using the same protocol on all these places (within one Kafka cluster). It would be better to declare it in one place (delegation token side) and Kafka sources/sinks can take this config over.

In this PR I've I've modified the code in a way that Kafka sources/sinks are taking over delegation token side `security.protocol` configuration when the token and the source/sink matches in `bootstrap.servers` configuration. This default configuration can be overwritten on each source/sink independently by using `kafka.security.protocol` configuration.

### Why are the changes needed?
The actual configuration's default behavior represents the minority of the use-cases and inconvenient.

### Does this PR introduce any user-facing change?
Yes, with this change users need to provide less configuration parameters by default.

### How was this patch tested?
Existing + additional unit tests.

Closes #25631 from gaborgsomogyi/SPARK-28928.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-09-09 15:41:51 -07:00
Sean Owen 6378d4bc06 [SPARK-28980][CORE][SQL][STREAMING][MLLIB] Remove most items deprecated in Spark 2.2.0 or earlier, for Spark 3
### What changes were proposed in this pull request?

- Remove SQLContext.createExternalTable and Catalog.createExternalTable, deprecated in favor of createTable since 2.2.0, plus tests of deprecated methods
- Remove HiveContext, deprecated in 2.0.0, in favor of `SparkSession.builder.enableHiveSupport`
- Remove deprecated KinesisUtils.createStream methods, plus tests of deprecated methods, deprecate in 2.2.0
- Remove deprecated MLlib (not Spark ML) linear method support, mostly utility constructors and 'train' methods, and associated docs. This includes methods in LinearRegression, LogisticRegression, Lasso, RidgeRegression. These have been deprecated since 2.0.0
- Remove deprecated Pyspark MLlib linear method support, including LogisticRegressionWithSGD, LinearRegressionWithSGD, LassoWithSGD
- Remove 'runs' argument in KMeans.train() method, which has been a no-op since 2.0.0
- Remove deprecated ChiSqSelector isSorted protected method
- Remove deprecated 'yarn-cluster' and 'yarn-client' master argument in favor of 'yarn' and deploy mode 'cluster', etc

Notes:

- I was not able to remove deprecated DataFrameReader.json(RDD) in favor of DataFrameReader.json(Dataset); the former was deprecated in 2.2.0, but, it is still needed to support Pyspark's .json() method, which can't use a Dataset.
- Looks like SQLContext.createExternalTable was not actually deprecated in Pyspark, but, almost certainly was meant to be? Catalog.createExternalTable was.
- I afterwards noted that the toDegrees, toRadians functions were almost removed fully in SPARK-25908, but Felix suggested keeping just the R version as they hadn't been technically deprecated. I'd like to revisit that. Do we really want the inconsistency? I'm not against reverting it again, but then that implies leaving SQLContext.createExternalTable just in Pyspark too, which seems weird.
- I *kept* LogisticRegressionWithSGD, LinearRegressionWithSGD, LassoWithSGD, RidgeRegressionWithSGD in Pyspark, though deprecated, as it is hard to remove them (still used by StreamingLogisticRegressionWithSGD?) and they are not fully removed in Scala. Maybe should not have been deprecated.

### Why are the changes needed?

Deprecated items are easiest to remove in a major release, so we should do so as much as possible for Spark 3. This does not target items deprecated 'recently' as of Spark 2.3, which is still 18 months old.

### Does this PR introduce any user-facing change?

Yes, in that deprecated items are removed from some public APIs.

### How was this patch tested?

Existing tests.

Closes #25684 from srowen/SPARK-28980.

Lead-authored-by: Sean Owen <sean.owen@databricks.com>
Co-authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-09-09 10:19:40 -05:00
Kengo Seki 1f056eb313 [SPARK-27420][DSTREAMS][KINESIS] KinesisInputDStream should expose a way to configure CloudWatch metrics
## What changes were proposed in this pull request?

KinesisInputDStream currently does not provide a way to disable
CloudWatch metrics push. Its default level is "DETAILED" which pushes
10s of metrics every 10 seconds. When dealing with multiple streaming
jobs this add up pretty quickly, leading to thousands of dollars in cost.
To address this problem, this PR adds interfaces for accessing
KinesisClientLibConfiguration's `withMetrics` and
`withMetricsEnabledDimensions` methods to KinesisInputDStream
so that users can configure KCL's metrics levels and dimensions.

## How was this patch tested?

By running updated unit tests in KinesisInputDStreamBuilderSuite.
In addition, I ran a Streaming job with MetricsLevel.NONE and confirmed:

* there's no data point for the "Operation", "Operation, ShardId" and "WorkerIdentifier" dimensions on the AWS management console
* there's no DEBUG level message from Amazon KCL, such as "Successfully published xx datums."

Please review http://spark.apache.org/contributing.html before opening a pull request.

Closes #24651 from sekikn/SPARK-27420.

Authored-by: Kengo Seki <sekikn@apache.org>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-09-08 19:48:53 -05:00
Jungtaek Lim (HeartSaVioR) 594c9c5a3e [SPARK-25151][SS] Apply Apache Commons Pool to KafkaDataConsumer
## What changes were proposed in this pull request?

This patch does pooling for both kafka consumers as well as fetched data. The overall benefits of the patch are following:

* Both pools support eviction on idle objects, which will help closing invalid idle objects which topic or partition are no longer be assigned to any tasks.
* It also enables applying different policies on pool, which helps optimization of pooling for each pool.
* We concerned about multiple tasks pointing same topic partition as well as same group id, and existing code can't handle this hence excess seek and fetch could happen. This patch properly handles the case.
* It also makes the code always safe to leverage cache, hence no need to maintain reuseCache parameter.

Moreover, pooling kafka consumers is implemented based on Apache Commons Pool, which also gives couple of benefits:

* We can get rid of synchronization of KafkaDataConsumer object while acquiring and returning InternalKafkaConsumer.
* We can extract the feature of object pool to outside of the class, so that the behaviors of the pool can be tested easily.
* We can get various statistics for the object pool, and also be able to enable JMX for the pool.

FetchedData instances are pooled by custom implementation of pool instead of leveraging Apache Commons Pool, because they have CacheKey as first key and "desired offset" as second key which "desired offset" is changing - I haven't found any general pool implementations supporting this.

This patch brings additional dependency, Apache Commons Pool 2.6.0 into `spark-sql-kafka-0-10` module.

## How was this patch tested?

Existing unit tests as well as new tests for object pool.

Also did some experiment regarding proving concurrent access of consumers for same topic partition.

* Made change on both sides (master and patch) to log when creating Kafka consumer or fetching records from Kafka is happening.
* branches
  * master: https://github.com/HeartSaVioR/spark/tree/SPARK-25151-master-ref-debugging
  * patch: https://github.com/HeartSaVioR/spark/tree/SPARK-25151-debugging
* Test query (doing self-join)
  * https://gist.github.com/HeartSaVioR/d831974c3f25c02846f4b15b8d232cc2
* Ran query from spark-shell, with using `local[*]` to maximize the chance to have concurrent access
* Collected the count of fetch requests on Kafka via command: `grep "creating new Kafka consumer" logfile | wc -l`
* Collected the count of creating Kafka consumers via command: `grep "fetching data from Kafka consumer" logfile | wc -l`

Topic and data distribution is follow:

```
truck_speed_events_stream_spark_25151_v1:0:99440
truck_speed_events_stream_spark_25151_v1:1:99489
truck_speed_events_stream_spark_25151_v1:2:397759
truck_speed_events_stream_spark_25151_v1:3:198917
truck_speed_events_stream_spark_25151_v1:4:99484
truck_speed_events_stream_spark_25151_v1:5:497320
truck_speed_events_stream_spark_25151_v1:6:99430
truck_speed_events_stream_spark_25151_v1:7:397887
truck_speed_events_stream_spark_25151_v1:8:397813
truck_speed_events_stream_spark_25151_v1:9:0
```

The experiment only used smallest 4 partitions (0, 1, 4, 6) from these partitions to finish the query earlier.

The result of experiment is below:

branch | create Kafka consumer | fetch request
-- | -- | --
master | 1986 | 2837
patch | 8 | 1706

Closes #22138 from HeartSaVioR/SPARK-25151.

Lead-authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan@gmail.com>
Co-authored-by: Jungtaek Lim <kabhwan@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-09-04 10:17:38 -07:00
Sean Owen eb037a8180 [SPARK-28855][CORE][ML][SQL][STREAMING] Remove outdated usages of Experimental, Evolving annotations
### What changes were proposed in this pull request?

The Experimental and Evolving annotations are both (like Unstable) used to express that a an API may change. However there are many things in the code that have been marked that way since even Spark 1.x. Per the dev thread, anything introduced at or before Spark 2.3.0 is pretty much 'stable' in that it would not change without a deprecation cycle. Therefore I'd like to remove most of these annotations. And, remove the `:: Experimental ::` scaladoc tag too. And likewise for Python, R.

The changes below can be summarized as:
- Generally, anything introduced at or before Spark 2.3.0 has been unmarked as neither Evolving nor Experimental
- Obviously experimental items like DSv2, Barrier mode, ExperimentalMethods are untouched
- I _did_ unmark a few MLlib classes introduced in 2.4, as I am quite confident they're not going to change (e.g. KolmogorovSmirnovTest, PowerIterationClustering)

It's a big change to review, so I'd suggest scanning the list of _files_ changed to see if any area seems like it should remain partly experimental and examine those.

### Why are the changes needed?

Many of these annotations are incorrect; the APIs are de facto stable. Leaving them also makes legitimate usages of the annotations less meaningful.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Existing tests.

Closes #25558 from srowen/SPARK-28855.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-09-01 10:15:00 -05:00
Gabor Somogyi d502c80404 [SPARK-28922][SS] Safe Kafka parameter redaction
### What changes were proposed in this pull request?
At the moment Kafka parameter reduction is expecting `SparkEnv`.  This must exist in normal queries but several unit tests are not providing it to make things simple. As an end-result such tests are throwing similar exception:
```
java.lang.NullPointerException
	at org.apache.spark.kafka010.KafkaRedactionUtil$.redactParams(KafkaRedactionUtil.scala:29)
	at org.apache.spark.kafka010.KafkaRedactionUtilSuite.$anonfun$new$1(KafkaRedactionUtilSuite.scala:33)
	at org.scalatest.OutcomeOf.outcomeOf(OutcomeOf.scala:85)
	at org.scalatest.OutcomeOf.outcomeOf$(OutcomeOf.scala:83)
	at org.scalatest.OutcomeOf$.outcomeOf(OutcomeOf.scala:104)
	at org.scalatest.Transformer.apply(Transformer.scala:22)
	at org.scalatest.Transformer.apply(Transformer.scala:20)
	at org.scalatest.FunSuiteLike$$anon$1.apply(FunSuiteLike.scala:186)
	at org.apache.spark.SparkFunSuite.withFixture(SparkFunSuite.scala:149)
	at org.scalatest.FunSuiteLike.invokeWithFixture$1(FunSuiteLike.scala:184)
	at org.scalatest.FunSuiteLike.$anonfun$runTest$1(FunSuiteLike.scala:196)
	at org.scalatest.SuperEngine.runTestImpl(Engine.scala:289)
	at org.scalatest.FunSuiteLike.runTest(FunSuiteLike.scala:196)
	at org.scalatest.FunSuiteLike.runTest$(FunSuiteLike.scala:178)
	at org.apache.spark.SparkFunSuite.org$scalatest$BeforeAndAfterEach$$super$runTest(SparkFunSuite.scala:56)
	at org.scalatest.BeforeAndAfterEach.runTest(BeforeAndAfterEach.scala:221)
	at org.scalatest.BeforeAndAfterEach.runTest$(BeforeAndAfterEach.scala:214)
	at org.apache.spark.SparkFunSuite.runTest(SparkFunSuite.scala:56)
	at org.scalatest.FunSuiteLike.$anonfun$runTests$1(FunSuiteLike.scala:229)
	at org.scalatest.SuperEngine.$anonfun$runTestsInBranch$1(Engine.scala:396)
	at scala.collection.immutable.List.foreach(List.scala:392)
	at org.scalatest.SuperEngine.traverseSubNodes$1(Engine.scala:384)
	at org.scalatest.SuperEngine.runTestsInBranch(Engine.scala:379)
	at org.scalatest.SuperEngine.runTestsImpl(Engine.scala:461)
	at org.scalatest.FunSuiteLike.runTests(FunSuiteLike.scala:229)
	at org.scalatest.FunSuiteLike.runTests$(FunSuiteLike.scala:228)
	at org.scalatest.FunSuite.runTests(FunSuite.scala:1560)
	at org.scalatest.Suite.run(Suite.scala:1147)
	at org.scalatest.Suite.run$(Suite.scala:1129)
	at org.scalatest.FunSuite.org$scalatest$FunSuiteLike$$super$run(FunSuite.scala:1560)
	at org.scalatest.FunSuiteLike.$anonfun$run$1(FunSuiteLike.scala:233)
	at org.scalatest.SuperEngine.runImpl(Engine.scala:521)
	at org.scalatest.FunSuiteLike.run(FunSuiteLike.scala:233)
	at org.scalatest.FunSuiteLike.run$(FunSuiteLike.scala:232)
	at org.apache.spark.SparkFunSuite.org$scalatest$BeforeAndAfterAll$$super$run(SparkFunSuite.scala:56)
	at org.scalatest.BeforeAndAfterAll.liftedTree1$1(BeforeAndAfterAll.scala:213)
	at org.scalatest.BeforeAndAfterAll.run(BeforeAndAfterAll.scala:210)
	at org.scalatest.BeforeAndAfterAll.run$(BeforeAndAfterAll.scala:208)
	at org.apache.spark.SparkFunSuite.run(SparkFunSuite.scala:56)
	at org.scalatest.tools.SuiteRunner.run(SuiteRunner.scala:45)
	at org.scalatest.tools.Runner$.$anonfun$doRunRunRunDaDoRunRun$13(Runner.scala:1346)
	at org.scalatest.tools.Runner$.$anonfun$doRunRunRunDaDoRunRun$13$adapted(Runner.scala:1340)
	at scala.collection.immutable.List.foreach(List.scala:392)
	at org.scalatest.tools.Runner$.doRunRunRunDaDoRunRun(Runner.scala:1340)
	at org.scalatest.tools.Runner$.$anonfun$runOptionallyWithPassFailReporter$24(Runner.scala:1031)
	at org.scalatest.tools.Runner$.$anonfun$runOptionallyWithPassFailReporter$24$adapted(Runner.scala:1010)
	at org.scalatest.tools.Runner$.withClassLoaderAndDispatchReporter(Runner.scala:1506)
	at org.scalatest.tools.Runner$.runOptionallyWithPassFailReporter(Runner.scala:1010)
	at org.scalatest.tools.Runner$.run(Runner.scala:850)
	at org.scalatest.tools.Runner.run(Runner.scala)
	at org.jetbrains.plugins.scala.testingSupport.scalaTest.ScalaTestRunner.runScalaTest2(ScalaTestRunner.java:131)
	at org.jetbrains.plugins.scala.testingSupport.scalaTest.ScalaTestRunner.main(ScalaTestRunner.java:28)
```
These are annoying and only red herrings so I would like to make them disappear.

There are basically 2 ways to handle this situation:
* Add default value for `SparkEnv` in `KafkaReductionUtil`
* Add `SparkEnv` to all such tests => I think it would be overkill and would just increase number of lines without real value

Considering this I've chosen the first approach.

### Why are the changes needed?
Couple of tests are throwing exceptions even if no real problem.

### Does this PR introduce any user-facing change?
No.

### How was this patch tested?
New + additional unit tests.

Closes #25621 from gaborgsomogyi/safe-reduct.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-08-29 19:17:48 -07:00
Gabor Somogyi 7d72c073dd [SPARK-28760][SS][TESTS] Add Kafka delegation token end-to-end test with mini KDC
### What changes were proposed in this pull request?
At the moment no end-to-end Kafka delegation token test exists which was mainly because of missing embedded KDC. KDC is missing in general from the testing side so I've discovered what kind of possibilities are there. The most obvious choice is the MiniKDC inside the Hadoop library where Apache Kerby runs in the background. What this PR contains:
* Added MiniKDC as test dependency from Hadoop
* Added `maven-bundle-plugin` because couple of dependencies are coming in bundle format
* Added security mode to `KafkaTestUtils`. Namely start KDC -> start Zookeeper in secure mode -> start Kafka in secure mode
* Added a roundtrip test (saves and reads back data from Kafka)

### Why are the changes needed?
No such test exists + security testing with KDC is completely missing.

### Does this PR introduce any user-facing change?
No.

### How was this patch tested?
Existing + additional unit tests.
I've put the additional test into a loop and was consuming ~10 sec average.

Closes #25477 from gaborgsomogyi/SPARK-28760.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-08-29 11:52:35 -07:00
Wenchen Fan cb06209fc9 [SPARK-28747][SQL] merge the two data source v2 fallback configs
## What changes were proposed in this pull request?

Currently we have 2 configs to specify which v2 sources should fallback to v1 code path. One config for read path, and one config for write path.

However, I found it's awkward to work with these 2 configs:
1. for `CREATE TABLE USING format`, should this be read path or write path?
2. for `V2SessionCatalog.loadTable`,  we need to return `UnresolvedTable` if it's a DS v1 or we need to fallback to v1 code path. However, at that time, we don't know if the returned table will be used for read or write.

We don't have any new features or perf improvement in file source v2. The fallback API is just a safeguard if we have bugs in v2 implementations. There are not many benefits to support falling back to v1 for read and write path separately.

This PR proposes to merge these 2 configs into one.

## How was this patch tested?

existing tests

Closes #25465 from cloud-fan/merge-conf.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-08-27 20:47:24 +08:00
Jungtaek Lim (HeartSaVioR) 64032cb01f [MINOR][SS] Reuse KafkaSourceInitialOffsetWriter to deduplicate
### What changes were proposed in this pull request?

This patch proposes to reuse KafkaSourceInitialOffsetWriter to remove identical code in KafkaSource.

Credit to jaceklaskowski for finding this.
https://lists.apache.org/thread.html/7faa6ac29d871444eaeccefc520e3543a77f4362af4bb0f12a3f7cb2%3Cdev.spark.apache.org%3E

### Why are the changes needed?

The code is duplicated with identical code, which opens the chance to maintain the code separately and might end up with bugs not addressed one side.

### Does this PR introduce any user-facing change?

No

### How was this patch tested?

Existing UTs, as it's simple refactor.

Closes #25583 from HeartSaVioR/MINOR-SS-reuse-KafkaSourceInitialOffsetWriter.

Authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-08-26 18:06:18 -07:00
Gabor Somogyi b205269ae0 [SPARK-28875][DSTREAMS][SS][TESTS] Add Task retry tests to make sure new consumer used
### What changes were proposed in this pull request?
When Task retry happens with Kafka source then it's not known whether the consumer is the issue so the old consumer removed from cache and new consumer created. The feature works fine but not covered with tests.

In this PR I've added such test for DStreams + Structured Streaming.

### Why are the changes needed?
No such tests are there.

### Does this PR introduce any user-facing change?
No.

### How was this patch tested?
Existing + new unit tests.

Closes #25582 from gaborgsomogyi/SPARK-28875.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-08-26 13:12:14 -07:00
Wenchen Fan 97dc4c0bfc [SPARK-28744][SQL][TEST] rename SharedSQLContext to SharedSparkSession
## What changes were proposed in this pull request?

The Spark SQL test framework needs to support 2 kinds of tests:
1. tests inside Spark to test Spark itself (extends `SparkFunSuite`)
2. test outside of Spark to test Spark applications (introduced at b57ed2245c)

The class hierarchy of the major testing traits:
![image](https://user-images.githubusercontent.com/3182036/63088526-c0f0af80-bf87-11e9-9bed-c144c2486da9.png)

`PlanTestBase`, `SQLTestUtilsBase` and `SharedSparkSession` intentionally don't extend `SparkFunSuite`, so that they can be used for tests outside of Spark. Tests in Spark should extends `QueryTest` and/or `SharedSQLContext` in most cases.

However, the name is a little confusing. As a result, some test suites extend `SharedSparkSession` instead of `SharedSQLContext`. `SharedSparkSession` doesn't work well with `SparkFunSuite` as it doesn't have the special handling of thread auditing in `SharedSQLContext`. For example, you will see a warning starting with `===== POSSIBLE THREAD LEAK IN SUITE` when you run `DataFrameSelfJoinSuite`.

This PR proposes to rename `SharedSparkSession` to `SharedSparkSessionBase`, and rename `SharedSQLContext` to `SharedSparkSession`.

## How was this patch tested?

(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)

Please review https://spark.apache.org/contributing.html before opening a pull request.

Closes #25463 from cloud-fan/minor.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-08-19 19:01:56 +08:00
Gabor Somogyi a493031e2e [SPARK-28695][SS] Use CaseInsensitiveMap in KafkaSourceProvider to make source param handling more robust
## What changes were proposed in this pull request?

[SPARK-28163](https://issues.apache.org/jira/browse/SPARK-28163) fixed a bug and during the analysis we've concluded it would be more robust to use `CaseInsensitiveMap` inside Kafka source. This case less lower/upper case problem would rise in the future.

Please note this PR doesn't intend to solve any kind of actual problem but finish the concept added in [SPARK-28163](https://issues.apache.org/jira/browse/SPARK-28163) (in a fix PR I didn't want to add too invasive changes). In this PR I've changed `Map[String, String]` to `CaseInsensitiveMap[String]` to enforce the usage. These are the main use-cases:
* `contains` => `CaseInsensitiveMap` solves it
* `get...` => `CaseInsensitiveMap` solves it
* `filter` => keys must be converted to lowercase because there is no guarantee that the incoming map has such key set
* `find` => keys must be converted to lowercase because there is no guarantee that the incoming map has such key set
* passing parameters to Kafka consumer/producer => keys must be converted to lowercase because there is no guarantee that the incoming map has such key set

## How was this patch tested?

Existing unit tests.

Closes #25418 from gaborgsomogyi/SPARK-28695.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-08-15 14:43:52 +08:00
Gengliang Wang 48adc91057 [SPARK-28698][SQL] Support user-specified output schema in to_avro
## What changes were proposed in this pull request?

The mapping of Spark schema to Avro schema is many-to-many. (See https://spark.apache.org/docs/latest/sql-data-sources-avro.html#supported-types-for-spark-sql---avro-conversion)
The default schema mapping might not be exactly what users want. For example, by default, a "string" column is always written as "string" Avro type, but users might want to output the column as "enum" Avro type.
With PR https://github.com/apache/spark/pull/21847, Spark supports user-specified schema in the batch writer.
For the function `to_avro`, we should support user-specified output schema as well.

## How was this patch tested?

Unit test.

Closes #25419 from gengliangwang/to_avro.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-08-13 20:52:16 +08:00
younggyu chun 8535df7261 [MINOR] Fix typos in comments and replace an explicit type with <>
## What changes were proposed in this pull request?
This PR fixed typos in comments and replace the explicit type with '<>' for Java 8+.

## How was this patch tested?
Manually tested.

Closes #25338 from younggyuchun/younggyu.

Authored-by: younggyu chun <younggyuchun@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-08-10 16:47:11 -05:00
Gabor Somogyi 5663386f4b [SPARK-28163][SS] Use CaseInsensitiveMap for KafkaOffsetReader
## What changes were proposed in this pull request?

There are "unsafe" conversions in the Kafka connector.
`CaseInsensitiveStringMap` comes in which is then converted the following way:
```
...
options.asScala.toMap
...
```
The main problem with this is that such case it looses its case insensitive nature
(case insensitive map is converting the key to lower case when get/contains called).

In this PR I'm using `CaseInsensitiveMap` to solve this problem.

## How was this patch tested?

Existing + additional unit tests.

Closes #24967 from gaborgsomogyi/SPARK-28163.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-08-09 17:08:11 +08:00
Shixiong Zhu b9c2521de2 [SPARK-28489][SS] Fix a bug that KafkaOffsetRangeCalculator.getRanges may drop offsets
## What changes were proposed in this pull request?

`KafkaOffsetRangeCalculator.getRanges` may drop offsets due to round off errors. The test added in this PR is one example.

This PR rewrites the logic in `KafkaOffsetRangeCalculator.getRanges` to ensure it never drops offsets.

## How was this patch tested?

The regression test.

Closes #25237 from zsxwing/fix-range.

Authored-by: Shixiong Zhu <zsxwing@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-07-26 00:10:56 -07:00
Yuming Wang 022667cea6 [SPARK-28469][SQL] Change CalendarIntervalType's readable string representation from calendarinterval to interval
## What changes were proposed in this pull request?

This PR change `CalendarIntervalType`'s readable string representation from `calendarinterval` to `interval`.

## How was this patch tested?

Existing UT

Closes #25225 from wangyum/SPARK-28469.

Authored-by: Yuming Wang <yumwang@ebay.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-07-22 20:53:59 -07:00
Seth Fitzsimmons eb5dc746c2 [SPARK-28097][SQL] Map ByteType to SMALLINT for PostgresDialect
## What changes were proposed in this pull request?

PostgreSQL doesn't have `TINYINT`, which would map directly, but `SMALLINT`s are sufficient for uni-directional translation.

A side-effect of this fix is that `AggregatedDialect` is now usable with multiple dialects targeting `jdbc:postgresql`, as `PostgresDialect.getJDBCType` no longer throws (for which reason backporting this fix would be lovely):

1217996f15/sql/core/src/main/scala/org/apache/spark/sql/jdbc/AggregatedDialect.scala (L42)

`dialects.flatMap` currently throws on the first attempt to get a JDBC type preventing subsequent dialects in the chain from providing an alternative.

## How was this patch tested?

Unit tests.

Closes #24845 from mojodna/postgres-byte-type-mapping.

Authored-by: Seth Fitzsimmons <seth@mojodna.net>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-07-17 15:10:01 -07:00
Dongjoon Hyun 9a7f01d944 [SPARK-28201][SQL][TEST][FOLLOWUP] Fix Integration test suite according to the new exception message
## What changes were proposed in this pull request?

#25010 breaks the integration test suite due to the changing the user-facing exception like the following. This PR fixes the integration test suite.

```scala
-    require(
-      decimalVal.precision <= precision,
-      s"Decimal precision ${decimalVal.precision} exceeds max precision $precision")
+    if (decimalVal.precision > precision) {
+      throw new ArithmeticException(
+        s"Decimal precision ${decimalVal.precision} exceeds max precision $precision")
+    }
```

## How was this patch tested?

Manual test.
```
$ build/mvn install -DskipTests
$ build/mvn -Pdocker-integration-tests -pl :spark-docker-integration-tests_2.12 test
```

Closes #25165 from dongjoon-hyun/SPARK-28201.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-07-16 16:02:49 +08:00
shivsood d8996fd940 [SPARK-28152][SQL] Mapped ShortType to SMALLINT and FloatType to REAL for MsSqlServerDialect
## What changes were proposed in this pull request?
This PR aims to correct mappings in `MsSqlServerDialect`. `ShortType` is mapped to `SMALLINT` and `FloatType` is mapped to `REAL` per [JBDC mapping]( https://docs.microsoft.com/en-us/sql/connect/jdbc/using-basic-data-types?view=sql-server-2017) respectively.

ShortType and FloatTypes are not correctly mapped to right JDBC types when using JDBC connector. This results in tables and spark data frame being created with unintended types. The issue was observed when validating against SQLServer.

Refer [JBDC mapping]( https://docs.microsoft.com/en-us/sql/connect/jdbc/using-basic-data-types?view=sql-server-2017  ) for guidance on mappings between SQLServer, JDBC and Java. Note that java "Short" type should be mapped to JDBC "SMALLINT" and java Float should be mapped to JDBC "REAL".

Some example issue that can happen because of wrong mappings
    - Write from df with column type results in a SQL table of with column type as INTEGER as opposed to SMALLINT.Thus a larger table that expected.
    - Read results in a dataframe with type INTEGER as opposed to ShortType

- ShortType has a problem in both the the write and read path
- FloatTypes only have an issue with read path. In the write path Spark data type 'FloatType' is correctly mapped to JDBC equivalent data type 'Real'. But in the read path when JDBC data types need to be converted to Catalyst data types ( getCatalystType) 'Real' gets incorrectly gets mapped to 'DoubleType' rather than 'FloatType'.

Refer #28151 which contained this fix as one part of a larger PR.  Following PR #28151 discussion it was decided to file seperate PRs for each of the fixes.

## How was this patch tested?
UnitTest added in JDBCSuite.scala and these were tested.
Integration test updated and passed in MsSqlServerDialect.scala
E2E test done with SQLServer

Closes #25146 from shivsood/float_short_type_fix.

Authored-by: shivsood <shivsood@microsoft.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-07-15 12:12:36 -07:00
Jungtaek Lim (HeartSaVioR) 7548a8826d [SPARK-28199][SS] Move Trigger implementations to Triggers.scala and avoid exposing these to the end users
## What changes were proposed in this pull request?

This patch proposes moving all Trigger implementations to `Triggers.scala`, to avoid exposing these implementations to the end users and let end users only deal with `Trigger.xxx` static methods. This fits the intention of deprecation of `ProcessingTIme`, and we agree to move others without deprecation as this patch will be shipped in major version (Spark 3.0.0).

## How was this patch tested?

UTs modified to work with newly introduced class.

Closes #24996 from HeartSaVioR/SPARK-28199.

Authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-07-14 14:46:01 -05:00
wangguangxin.cn 42b80ae128 [SPARK-28257][SQL] Use ConfigEntry for hardcoded configs in SQL
## What changes were proposed in this pull request?

There are some hardcoded configs, using config entry to replace them.

## How was this patch tested?

Existing UT

Closes #25059 from WangGuangxin/ConfigEntry.

Authored-by: wangguangxin.cn <wangguangxin.cn@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-07-11 22:36:07 -07:00
Gabor Somogyi d47c219f94 [SPARK-28055][SS][DSTREAMS] Add delegation token custom AdminClient configurations.
## What changes were proposed in this pull request?

At the moment Kafka delegation tokens are fetched through `AdminClient` but there is no possibility to add custom configuration parameters. In [options](https://spark.apache.org/docs/2.4.3/structured-streaming-kafka-integration.html#kafka-specific-configurations) there is already a possibility to add custom configurations.

In this PR I've added similar this possibility to `AdminClient`.

## How was this patch tested?

Existing + added unit tests.

```
cd docs/
SKIP_API=1 jekyll build
```
Manual webpage check.

Closes #24875 from gaborgsomogyi/SPARK-28055.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-07-11 09:36:24 -07:00
Gabor Somogyi 579edf4728 [SPARK-28335][DSTREAMS][TEST] DirectKafkaStreamSuite wait for Kafka async commit
## What changes were proposed in this pull request?

`DirectKafkaStreamSuite.offset recovery from kafka` commits offsets to Kafka with `Consumer.commitAsync` API (and then reads it back). Since this API is asynchronous it may send notifications late(or not at all). The actual test makes the assumption if the data sent and collected then the offset must be committed as well. This is not true.

In this PR I've made the following modifications:
* Wait for async offset commit before context stopped
* Added commit succeed log to see whether it arrived at all
* Using `ConcurrentHashMap` for committed offsets because 2 threads are using the variable (`JobGenerator` and `ScalaTest...`)

## How was this patch tested?

Existing unit test in a loop + jenkins runs.

Closes #25100 from gaborgsomogyi/SPARK-28335.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-07-10 09:35:39 -07:00
Gengliang Wang 3663dbe541 [SPARK-28218][SQL] Migrate Avro to File Data Source V2
## What changes were proposed in this pull request?

Migrate Avro to File source V2.

## How was this patch tested?

Unit test

Closes #25017 from gengliangwang/avroV2.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-07-05 00:52:03 -07:00
Yuming Wang 88cd6dc83d [SPARK-28248][SQL][TEST] Upgrade docker image and library for PostgreSQL integration test
## What changes were proposed in this pull request?

This pr upgrades Postgres docker image for integration tests.

## How was this patch tested?

manual tests:
```
./build/mvn install -DskipTests
./build/mvn test -Pdocker-integration-tests -pl :spark-docker-integration-tests_2.12
```

Closes #25050 from wangyum/SPARK-28248.

Authored-by: Yuming Wang <yumwang@ebay.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-07-05 00:43:28 -07:00
Jungtaek Lim (HeartSaVioR) 4212a30883 [SPARK-28142][SS][TEST][FOLLOWUP] Add configuration check test on Kafka continuous stream
## What changes were proposed in this pull request?

This patch adds missing UT which tests the changed behavior of original patch #24942.

## How was this patch tested?

Newly added UT.

Closes #24999 from HeartSaVioR/SPARK-28142-FOLLOWUP.

Authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-07-03 21:58:35 -07:00
Gabor Somogyi a006c85077 [SPARK-28232][SS][SQL] Add groupIdPrefix for Kafka batch connector
## What changes were proposed in this pull request?

According to the documentation `groupIdPrefix` should be available for `streaming and batch`.
It is not the case because the batch part is missing.

In this PR I've added:
* Structured Streaming test for v1 and v2 to cover `groupIdPrefix`
* Batch test for v1 and v2 to cover `groupIdPrefix`
* Added `groupIdPrefix` usage in batch

## How was this patch tested?

Additional + existing unit tests.

Closes #25030 from gaborgsomogyi/SPARK-28232.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-07-02 20:37:52 +08:00
Gabor Somogyi 0a4f985ca0 [SPARK-23098][SQL] Migrate Kafka Batch source to v2.
## What changes were proposed in this pull request?

Kafka batch data source is using v1 at the moment. In the PR I've migrated to v2. Majority of the change is moving code.

What this PR contains:
* useV1Sources usage fixed in `DataFrameReader` and `DataFrameWriter`
* `KafkaBatch` added to handle DSv2 batch reading
* `KafkaBatchWrite` added to handle DSv2 batch writing
* `KafkaBatchPartitionReader` extracted to share between batch and microbatch
* `KafkaDataWriter` extracted to share between batch, microbatch and continuous
* Batch related source/sink tests are now executing on v1 and v2 connectors
* Couple of classes hidden now, functions moved + couple of minor fixes

## How was this patch tested?

Existing + added unit tests.

Closes #24738 from gaborgsomogyi/SPARK-23098.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-07-02 09:47:30 +08:00
Dongjoon Hyun a7e16199f3 [SPARK-28174][BUILD][SS] Upgrade to Kafka 2.3.0
## What changes were proposed in this pull request?

This issue updates Kafka dependency to 2.3.0 to bring the following 9 client-side patches at least. Among them, the blocker issue [KAFKA-7703](https://issues.apache.org/jira/browse/KAFKA-7703) was reported by Apache Spark community. This dependency update will help us remove the workaround later.
- https://issues.apache.org/jira/issues/?jql=project%20%3D%20KAFKA%20AND%20fixVersion%20%3D%202.3.0%20AND%20fixVersion%20NOT%20IN%20(2.2.0%2C%202.2.1)%20AND%20component%20%3D%20clients

The following is the full release note.
- https://www.apache.org/dist/kafka/2.3.0/RELEASE_NOTES.html

## How was this patch tested?

Pass the Jenkins.

Closes #24976 from dongjoon-hyun/SPARK-28174.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-06-27 07:49:24 -07:00
Jungtaek Lim (HeartSaVioR) 85e95b7d27 [SPARK-28142][SS] Use CaseInsensitiveStringMap for KafkaContinuousStream
## What changes were proposed in this pull request?

This patch addresses a missing spot which Map should be passed as CaseInsensitiveStringMap - KafkaContinuousStream seems to be only the missed one.

Before this fix, it has a relevant bug where `pollTimeoutMs` is always set to default value, as the value of `KafkaSourceProvider.CONSUMER_POLL_TIMEOUT` is `kafkaConsumer.pollTimeoutMs` which key-lowercased map has been provided as `sourceOptions`.

## How was this patch tested?

N/A.

Closes #24942 from HeartSaVioR/MINOR-use-case-insensitive-map-for-kafka-continuous-source.

Authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2019-06-24 22:20:32 +09:00
Liang-Chi Hsieh 527d936049 [SPARK-27798][SQL] from_avro shouldn't produces same value when converted to local relation
## What changes were proposed in this pull request?

When using `from_avro` to deserialize avro data to catalyst StructType format, if `ConvertToLocalRelation` is applied at the time, `from_avro` produces only the last value (overriding previous values).

The cause is `AvroDeserializer` reuses output row for StructType. Normally, it should be fine in Spark SQL. But `ConvertToLocalRelation` just uses `InterpretedProjection` to project local rows. `InterpretedProjection` creates new row for each output thro, it includes the same nested row object from `AvroDeserializer`. By the end, converted local relation has only last value.

I think there're two possible options:

1. Make `AvroDeserializer` output new row for StructType.
2. Use `InterpretedMutableProjection` in `ConvertToLocalRelation` and call `copy()` on output rows.

Option 2 is chose because previously `ConvertToLocalRelation` also creates new rows, this `InterpretedMutableProjection` + `copy()` shoudn't bring too much performance penalty. `ConvertToLocalRelation` should be arguably less critical, compared with `AvroDeserializer`.

## How was this patch tested?

Added test.

Closes #24805 from viirya/SPARK-27798.

Authored-by: Liang-Chi Hsieh <viirya@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-06-07 13:47:36 -07:00
Gabor Somogyi 911fadf33a [SPARK-27748][SS] Kafka consumer/producer password/token redaction.
## What changes were proposed in this pull request?

Kafka parameters are logged at several places and the following parameters has to be redacted:
* Delegation token
* `ssl.truststore.password`
* `ssl.keystore.password`
* `ssl.key.password`

This PR contains:
* Spark central redaction framework used to redact passwords (`spark.redaction.regex`)
* Custom redaction added to handle `sasl.jaas.config` (delegation token)
* Redaction code added into consumer/producer code
* Test refactor

## How was this patch tested?

Existing + additional unit tests.

Closes #24627 from gaborgsomogyi/SPARK-27748.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-06-03 15:43:08 -07:00
Gabbi Merz 29e154b2f1 [SPARK-27858][SQL] Fix for avro deserialization on union types with multiple non-null types
## What changes were proposed in this pull request?

This PR aims to fix an issue on a union avro type with more than one non-null value (for instance `["string", "null", "int"]`) whose the deserialization to a DataFrame would throw a `java.lang.ArrayIndexOutOfBoundsException`. The issue was that the `fieldWriter` relied on the index from the avro schema before nulls were filtered out.

## How was this patch tested?

A test for the case of multiple non-null values was added and the tests were run using sbt by running `testOnly org.apache.spark.sql.avro.AvroSuite`

Closes #24722 from gcmerz/master.

Authored-by: Gabbi Merz <gmerz@palantir.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-05-27 20:09:23 -07:00
DB Tsai a12de29c1a [SPARK-27838][SQL] Support user provided non-nullable avro schema for nullable catalyst schema without any null record
## What changes were proposed in this pull request?

When the data is read from the sources, the catalyst schema is always nullable. Since Avro uses Union type to represent nullable, when any non-nullable avro file is read and then written out, the schema will always be changed.

This PR provides a solution for users to keep the Avro schema without being forced to use Union type.

## How was this patch tested?

One test is added.

Closes #24682 from dbtsai/avroNull.

Authored-by: DB Tsai <d_tsai@apple.com>
Signed-off-by: DB Tsai <d_tsai@apple.com>
2019-05-24 21:47:14 +00:00
Sean Owen 6c5827c723 [SPARK-27794][R][DOCS] Use https URL for CRAN repo
## What changes were proposed in this pull request?

Use https URL for CRAN repo (and for a Scala download in a Dockerfile)

## How was this patch tested?

Existing tests.

Closes #24664 from srowen/SPARK-27794.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-05-22 14:28:21 -07:00
Sean Owen 4d64ed8114 [SPARK-27796][MESOS] Remove obsolete spark-mesos Dockerfile example
## What changes were proposed in this pull request?

Remove obsolete spark-mesos Dockerfile example. This isn't tested and apparently hasn't been updated in 4 years.

## How was this patch tested?

N/A

Closes #24667 from srowen/SPARK-27796.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-05-21 10:53:55 -07:00
DB Tsai 808d9d05fc [SPARK-27762][SQL] Support user provided avro schema for writing fields with different ordering
## What changes were proposed in this pull request?

Spark Avro reader supports reading avro files with provided schema with different field orderings. However, the avro writer doesn't support this feature. This PR enables the Spark avro writer with this feature.

## How was this patch tested?

New test is added.

Closes #24635 from dbtsai/avroFix.

Lead-authored-by: DB Tsai <d_tsai@apple.com>
Co-authored-by: Brian Lindblom <blindblom@apple.com>
Signed-off-by: DB Tsai <d_tsai@apple.com>
2019-05-21 17:34:19 +00:00
Gabor Somogyi efa303581a [SPARK-27687][SS] Rename Kafka consumer cache capacity conf and document caching
## What changes were proposed in this pull request?

Kafka related Spark parameters has to start with `spark.kafka.` and not with `spark.sql.`. Because of this I've renamed `spark.sql.kafkaConsumerCache.capacity`.

Since Kafka consumer caching is not documented I've added this also.

## How was this patch tested?

Existing + added unit test.

```
cd docs
SKIP_API=1 jekyll build
```
and manual webpage check.

Closes #24590 from gaborgsomogyi/SPARK-27687.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-05-15 10:42:09 -07:00
Sean Owen a10608cb82 [SPARK-27680][CORE][SQL][GRAPHX] Remove usage of Traversable
## What changes were proposed in this pull request?

This removes usage of `Traversable`, which is removed in Scala 2.13. This is mostly an internal change, except for the change in the `SparkConf.setAll` method. See additional comments below.

## How was this patch tested?

Existing tests.

Closes #24584 from srowen/SPARK-27680.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-05-14 09:14:56 -05:00
hehuiyuan 5a8aad01c2 [SPARK-27343][KAFKA][SS] Avoid hardcoded for spark-sql-kafka-0-10
## What changes were proposed in this pull request?

[SPARK-27343](https://issues.apache.org/jira/projects/SPARK/issues/SPARK-27343)

Based on the previous PR: https://github.com/apache/spark/pull/24270

Extracting parameters , building the objects of ConfigEntry.

For example:
for the parameter "spark.kafka.producer.cache.timeout",we build
```
private[kafka010] val PRODUCER_CACHE_TIMEOUT =
    ConfigBuilder("spark.kafka.producer.cache.timeout")
      .doc("The expire time to remove the unused producers.")
      .timeConf(TimeUnit.MILLISECONDS)
      .createWithDefaultString("10m")
```

Closes #24574 from hehuiyuan/hehuiyuan-patch-9.

Authored-by: hehuiyuan <hehuiyuan@ZBMAC-C02WD3K5H.local>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-05-12 10:46:18 -05:00
Gengliang Wang 78a403fab9 [SPARK-27627][SQL] Make option "pathGlobFilter" as a general option for all file sources
## What changes were proposed in this pull request?

### Background:
The data source option `pathGlobFilter` is introduced for Binary file format: https://github.com/apache/spark/pull/24354 , which can be used for filtering file names, e.g. reading `.png` files only while there is `.json` files in the same directory.

### Proposal:
Make the option `pathGlobFilter` as a general option for all file sources. The path filtering should happen in the path globbing on Driver.

### Motivation:
Filtering the file path names in file scan tasks on executors is kind of ugly.

### Impact:
1. The splitting of file partitions will be more balanced.
2. The metrics of file scan will be more accurate.
3. Users can use the option for reading other file sources.

## How was this patch tested?

Unit tests

Closes #24518 from gengliangwang/globFilter.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2019-05-09 08:41:43 +09:00
Wenchen Fan bae5baae52 [SPARK-27642][SS] make v1 offset extends v2 offset
## What changes were proposed in this pull request?

To move DS v2 to the catalyst module, we can't make v2 offset rely on v1 offset, as v1 offset is in sql/core.

## How was this patch tested?

existing tests

Closes #24538 from cloud-fan/offset.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2019-05-07 23:03:15 -07:00
gengjiaan 8329e7debd [SPARK-27649][SS] Unify the way use 'spark.network.timeout'
## What changes were proposed in this pull request?

For historical reasons, structured streaming still has some old way of use
`spark.network.timeout`
, even though
`org.apache.spark.internal.config.Network.NETWORK_TIMEOUT`
is now available.

## How was this patch tested?
Exists UT.

Closes #24545 from beliefer/unify-spark-network-timeout.

Authored-by: gengjiaan <gengjiaan@360.cn>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-05-08 11:43:03 +08:00
Gabor Somogyi 2f55809425 [SPARK-27294][SS] Add multi-cluster Kafka delegation token
## What changes were proposed in this pull request?

The actual implementation doesn't support multi-cluster Kafka connection with delegation token. In this PR I've added this functionality.

What this PR contains:
* New way of configuration
* Multiple delegation token obtain/store/use functionality
* Documentation
* The change works on DStreams also

## How was this patch tested?

Existing + additional unit tests.
Additionally tested on cluster.

Test scenario:

* 2 * 4 node clusters
* The 4-4 nodes are in different kerberos realms
* Cross-Realm trust between the 2 realms
* Yarn
* Kafka broker version 2.1.0
* security.protocol = SASL_SSL
* sasl.mechanism = SCRAM-SHA-512
* Artificial exceptions during processing
* Source reads from realm1 sink writes to realm2

Kafka broker settings:

* delegation.token.expiry.time.ms=600000 (10 min)
* delegation.token.max.lifetime.ms=1200000 (20 min)
* delegation.token.expiry.check.interval.ms=300000 (5 min)

Closes #24305 from gaborgsomogyi/SPARK-27294.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-05-07 11:40:43 -07:00
Adi Muraru 8ef4da753d [SPARK-27610][YARN] Shade netty native libraries
## What changes were proposed in this pull request?

Fixed the `spark-<version>-yarn-shuffle.jar` artifact packaging to shade the native netty libraries:
- shade the `META-INF/native/libnetty_*` native libraries when packagin
the yarn shuffle service jar. This is required as netty library loader
derives that based on shaded package name.
- updated the `org/spark_project` shade package prefix to `org/sparkproject`
(i.e. removed underscore) as the former breaks the netty native lib loading.

This was causing the yarn external shuffle service to fail
when spark.shuffle.io.mode=EPOLL

## How was this patch tested?
Manual tests

Closes #24502 from amuraru/SPARK-27610_master.

Authored-by: Adi Muraru <amuraru@adobe.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-05-07 10:47:36 -07:00
Wenchen Fan 6ef45301a4 [SPARK-27579][SQL] remove BaseStreamingSource and BaseStreamingSink
## What changes were proposed in this pull request?

`BaseStreamingSource` and `BaseStreamingSink` is used to unify v1 and v2 streaming data source API in some code paths.

This PR removes these 2 interfaces, and let the v1 API extend v2 API to keep API compatibility.

The motivation is https://github.com/apache/spark/pull/24416 . We want to move data source v2 to catalyst module, but `BaseStreamingSource` and `BaseStreamingSink` are in sql/core.

## How was this patch tested?

existing tests

Closes #24471 from cloud-fan/streaming.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-05-06 20:41:57 +08:00
Dilip Biswal 6001d476ce [SPARK-27596][SQL] The JDBC 'query' option doesn't work for Oracle database
## What changes were proposed in this pull request?
**Description from JIRA**
For the JDBC option `query`, we use the identifier name to start with underscore: s"(${subquery}) _SPARK_GEN_JDBC_SUBQUERY_NAME${curId.getAndIncrement()}". This is not supported by Oracle.
The Oracle doesn't seem to support identifier name to start with non-alphabet character (unless it is quoted) and has length restrictions as well. [link](https://docs.oracle.com/cd/B19306_01/server.102/b14200/sql_elements008.htm)

In this PR, the generated alias name 'SPARK_GEN_JDBC_SUBQUERY_NAME<int value>' is fixed to remove "_" prefix and also the alias name is shortened to not exceed the identifier length limit.

## How was this patch tested?
Tests are added for MySql, Postgress, Oracle and DB2 to ensure enough coverage.

Closes #24532 from dilipbiswal/SPARK-27596.

Authored-by: Dilip Biswal <dbiswal@us.ibm.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2019-05-05 21:52:23 -07:00
Gabor Somogyi fb6b19ab7c [SPARK-23014][SS] Fully remove V1 memory sink.
## What changes were proposed in this pull request?

There is a MemorySink v2 already so v1 can be removed. In this PR I've removed it completely.
What this PR contains:
* V1 memory sink removal
* V2 memory sink renamed to become the only implementation
* Since DSv2 sends exceptions in a chained format (linking them with cause field) I've made python side compliant
* Adapted all the tests

## How was this patch tested?

Existing unit tests.

Closes #24403 from gaborgsomogyi/SPARK-23014.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-04-29 09:44:23 -07:00
Sean Owen 8a17d26784 [SPARK-27536][CORE][ML][SQL][STREAMING] Remove most use of scala.language.existentials
## What changes were proposed in this pull request?

I want to get rid of as much use of `scala.language.existentials` as possible for 3.0. It's a complicated language feature that generates warnings unless this value is imported. It might even be on the way out of Scala: https://contributors.scala-lang.org/t/proposal-to-remove-existential-types-from-the-language/2785

For Spark, it comes up mostly where the code plays fast and loose with generic types, not the advanced situations you'll often see referenced where this feature is explained. For example, it comes up in cases where a function returns something like `(String, Class[_])`. Scala doesn't like matching this to any other instance of `(String, Class[_])` because doing so requires inferring the existence of some type that satisfies both. Seems obvious if the generic type is a wildcard, but, not technically something Scala likes to let you get away with.

This is a large PR, and it only gets rid of _most_ instances of `scala.language.existentials`. The change should be all compile-time and shouldn't affect APIs or logic.

Many of the changes simply touch up sloppiness about generic types, making the known correct value explicit in the code.

Some fixes involve being more explicit about the existence of generic types in methods. For instance, `def foo(arg: Class[_])` seems innocent enough but should really be declared `def foo[T](arg: Class[T])` to let Scala select and fix a single type when evaluating calls to `foo`.

For kind of surprising reasons, this comes up in places where code evaluates a tuple of things that involve a generic type, but is OK if the two parts of the tuple are evaluated separately.

One key change was altering `Utils.classForName(...): Class[_]` to the more correct `Utils.classForName[T](...): Class[T]`. This caused a number of small but positive changes to callers that otherwise had to cast the result.

In several tests, `Dataset[_]` was used where `DataFrame` seems to be the clear intent.

Finally, in a few cases in MLlib, the return type `this.type` was used where there are no subclasses of the class that uses it. This really isn't needed and causes issues for Scala reasoning about the return type. These are just changed to be concrete classes as return types.

After this change, we have only a few classes that still import `scala.language.existentials` (because modifying them would require extensive rewrites to fix) and no build warnings.

## How was this patch tested?

Existing tests.

Closes #24431 from srowen/SPARK-27536.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-04-29 11:02:01 -05:00
Koert Kuipers 7b367bfc86 [SPARK-27477][BUILD] Kafka token provider should have provided dependency on Spark
## What changes were proposed in this pull request?

Change spark-token-provider-kafka-0-10 dependency on spark-core to be provided

## How was this patch tested?

Ran existing unit tests

Closes #24384 from koertkuipers/feat-kafka-token-provider-fix-deps.

Authored-by: Koert Kuipers <koert@tresata.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-04-26 11:52:08 -07:00
Wenchen Fan 85fd552ed6 [SPARK-27190][SQL] add table capability for streaming
## What changes were proposed in this pull request?

This is a followup of https://github.com/apache/spark/pull/24012 , to add the corresponding capabilities for streaming.

## How was this patch tested?

existing tests

Closes #24129 from cloud-fan/capability.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-04-26 15:44:23 +08:00
uncleGen d2656aaecd [SPARK-27494][SS] Null values don't work in Kafka source v2
## What changes were proposed in this pull request?

Right now Kafka source v2 doesn't support null values. The issue is in org.apache.spark.sql.kafka010.KafkaRecordToUnsafeRowConverter.toUnsafeRow which doesn't handle null values.

## How was this patch tested?

add new unit tests

Closes #24441 from uncleGen/SPARK-27494.

Authored-by: uncleGen <hustyugm@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-04-26 14:25:31 +08:00
Sean Owen 596a5ff273 [MINOR][BUILD] Update genjavadoc to 0.13
## What changes were proposed in this pull request?

Kind of related to https://github.com/gatorsmile/spark/pull/5 - let's update genjavadoc to see if it generates fewer spurious javadoc errors to begin with.

## How was this patch tested?

Existing docs build

Closes #24443 from srowen/genjavadoc013.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2019-04-24 13:44:48 +09:00
Gabor Somogyi 94adffa8b1 [SPARK-27270][SS] Add Kafka dynamic JAAS authentication debug possibility
## What changes were proposed in this pull request?

`Krb5LoginModule` supports debug parameter which is not yet supported from Spark side. This configuration makes it easier to debug authentication issues against Kafka.

In this PR `Krb5LoginModule` debug flag controlled by either `sun.security.krb5.debug` or `com.ibm.security.krb5.Krb5Debug`.

Additionally found some hardcoded values like `ssl.truststore.location`, etc... which could be error prone if Kafka changes it so in such cases Kafka define used.

## How was this patch tested?

Existing + additional unit tests + on cluster.

Closes #24204 from gaborgsomogyi/SPARK-27270.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-04-11 16:39:40 -07:00
Sean Owen 4ec7f631aa [SPARK-27404][CORE][SQL][STREAMING][YARN] Fix build warnings for 3.0: postfixOps edition
## What changes were proposed in this pull request?

Fix build warnings -- see some details below.

But mostly, remove use of postfix syntax where it causes warnings without the `scala.language.postfixOps` import. This is mostly in expressions like "120000 milliseconds". Which, I'd like to simplify to things like "2.minutes" anyway.

## How was this patch tested?

Existing tests.

Closes #24314 from srowen/SPARK-27404.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-04-11 13:43:44 -05:00
gengjiaan 53e31e2ca1 [SPARK-27399][STREAMING][KAFKA] Arrange scattered config and reduce hardcode for kafka 10.
## What changes were proposed in this pull request?

I found a lot scattered config in `Kafka` streaming.I think should arrange these config in unified position.

## How was this patch tested?

No need UT.

Closes #24267 from beliefer/arrange-scattered-streaming-kafka-config.

Authored-by: gengjiaan <gengjiaan@360.cn>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-04-06 18:05:15 -05:00
Sean Owen d4420b455a [SPARK-27323][CORE][SQL][STREAMING] Use Single-Abstract-Method support in Scala 2.12 to simplify code
## What changes were proposed in this pull request?

Use Single Abstract Method syntax where possible (and minor related cleanup). Comments below. No logic should change here.

## How was this patch tested?

Existing tests.

Closes #24241 from srowen/SPARK-27323.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-04-02 07:37:05 -07:00
Zhu, Lipeng 1f2564d0b0 [SPARK-27155][TEST] Parameterize Oracle docker image name
## What changes were proposed in this pull request?

Update Oracle docker image name.

## How was this patch tested?

./build/mvn test -Pdocker-integration-tests -pl :spark-docker-integration-tests_2.12

Closes #24086 from lipzhu/SPARK-27155.

Authored-by: Zhu, Lipeng <lipzhu@ebay.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-03-25 15:17:41 -05:00
Sean Owen 8bc304f97e [SPARK-26132][BUILD][CORE] Remove support for Scala 2.11 in Spark 3.0.0
## What changes were proposed in this pull request?

Remove Scala 2.11 support in build files and docs, and in various parts of code that accommodated 2.11. See some targeted comments below.

## How was this patch tested?

Existing tests.

Closes #23098 from srowen/SPARK-26132.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-03-25 10:46:42 -05:00
Dongjoon Hyun 6ef94e0f18 [SPARK-27260][SS] Upgrade to Kafka 2.2.0
## What changes were proposed in this pull request?

This PR aims to update Kafka dependency to 2.2.0 to bring the following improvement and bug fixes.
- https://issues.apache.org/jira/projects/KAFKA/versions/12344063

Due to [KAFKA-4453](https://issues.apache.org/jira/browse/KAFKA-4453), data plane API and controller plane API are separated. Apache Spark needs the following changes.
```scala
- servers.head.apis.metadataCache
+ servers.head.dataPlaneRequestProcessor.metadataCache
```

## How was this patch tested?

Pass the Jenkins with the existing tests.

Closes #24190 from dongjoon-hyun/SPARK-27260.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-03-24 17:39:57 -07:00
Dongjoon Hyun 4d5247778a [SPARK-27197][SQL][TEST] Add ReadNestedSchemaTest for file-based data sources
## What changes were proposed in this pull request?

The reader schema is said to be evolved (or projected) when it changed after the data is written by writers. Apache Spark file-based data sources have a test coverage for that; e.g. [ReadSchemaSuite.scala](https://github.com/apache/spark/blob/master/sql/core/src/test/scala/org/apache/spark/sql/execution/datasources/ReadSchemaSuite.scala). This PR aims to add a test coverage for nested columns by adding and hiding nested columns.

## How was this patch tested?

Pass the Jenkins with newly added tests.

Closes #24139 from dongjoon-hyun/SPARK-27197.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: DB Tsai <d_tsai@apple.com>
2019-03-20 00:22:05 +00:00
Zhu, Lipeng 99c427b1d3 [SPARK-27168][SQL][TEST] Add docker integration test for MsSql server
## What changes were proposed in this pull request?

This PR aims to add a JDBC integration test for MsSql server.

## How was this patch tested?

```
./build/mvn clean install -DskipTests
./build/mvn test -Pdocker-integration-tests -pl :spark-docker-integration-tests_2.12 \
-Dtest=none -DwildcardSuites=org.apache.spark.sql.jdbc.MsSqlServerIntegrationSuite
```

Closes #24099 from lipzhu/SPARK-27168.

Lead-authored-by: Zhu, Lipeng <lipzhu@ebay.com>
Co-authored-by: Dongjoon Hyun <dhyun@apple.com>
Co-authored-by: Lipeng Zhu <lipzhu@icloud.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-03-19 08:43:23 -07:00
Dongjoon Hyun 26e9849cb4 [SPARK-27195][SQL][TEST] Add AvroReadSchemaSuite
## What changes were proposed in this pull request?

The reader schema is said to be evolved (or projected) when it changed after the data is written by writers. Apache Spark file-based data sources have a test coverage for that, [ReadSchemaSuite.scala](https://github.com/apache/spark/blob/master/sql/core/src/test/scala/org/apache/spark/sql/execution/datasources/ReadSchemaSuite.scala). This PR aims to add `AvroReadSchemaSuite` to ensure the minimal consistency among file-based data sources and prevent a future regression in Avro data source.

## How was this patch tested?

Pass the Jenkins with the newly added test suite.

Closes #24135 from dongjoon-hyun/SPARK-27195.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-03-18 20:10:30 -07:00
Ryan Blue e348f14259 [SPARK-26811][SQL] Add capabilities to v2.Table
## What changes were proposed in this pull request?

This adds a new method, `capabilities` to `v2.Table` that returns a set of `TableCapability`. Capabilities are used to fail queries during analysis checks, `V2WriteSupportCheck`, when the table does not support operations, like truncation.

## How was this patch tested?

Existing tests for regressions, added new analysis suite, `V2WriteSupportCheckSuite`, for new capability checks.

Closes #24012 from rdblue/SPARK-26811-add-capabilities.

Authored-by: Ryan Blue <blue@apache.org>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-03-18 18:25:11 +08:00
DylanGuedes 2fecc4a3fe [SPARK-27138][TESTS][KAFKA] Remove AdminUtils calls (fixes deprecation)
## What changes were proposed in this pull request?

To change calls to AdminUtils, currently used to create and delete topics in Kafka tests. With this change, it will rely on adminClient, the recommended way from now on.

## How was this patch tested?
I ran all unit tests and they are fine. Since it is already good tested, I thought that changes in the API wouldn't require new tests, as long as the current tests are working fine.

Closes #24071 from DylanGuedes/spark-27138.

Authored-by: DylanGuedes <djmgguedes@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-03-14 09:20:30 -05:00
Wenchen Fan 2a80a4cd39 [SPARK-27106][SQL] merge CaseInsensitiveStringMap and DataSourceOptions
## What changes were proposed in this pull request?

It's a little awkward to have 2 different classes(`CaseInsensitiveStringMap` and `DataSourceOptions`) to present the options in data source and catalog API.

This PR merges these 2 classes, while keeping the name `CaseInsensitiveStringMap`, which is more precise.

## How was this patch tested?

existing tests

Closes #24025 from cloud-fan/option.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-03-14 01:23:27 +08:00
Wenchen Fan d3813d8b21 [SPARK-27064][SS] create StreamingWrite at the beginning of streaming execution
## What changes were proposed in this pull request?

According to the [design](https://docs.google.com/document/d/1vI26UEuDpVuOjWw4WPoH2T6y8WAekwtI7qoowhOFnI4/edit?usp=sharing), the life cycle of `StreamingWrite` should be the same as the read side `MicroBatch/ContinuousStream`, i.e. each run of the stream query, instead of each epoch.

This PR fixes it.

## How was this patch tested?

existing tests

Closes #23981 from cloud-fan/dsv2.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-03-13 19:47:54 +08:00
Gabor Somogyi 98a8725e66 [SPARK-27022][DSTREAMS] Add kafka delegation token support.
## What changes were proposed in this pull request?

It adds Kafka delegation token support for DStreams. Please be aware as Kafka native sink is not available for DStreams this PR contains delegation token usage only on consumer side.

What this PR contains:
* Usage of token through dynamic JAAS configuration
* `KafkaConfigUpdater` moved to `kafka-0-10-token-provider`
* `KafkaSecurityHelper` functionality moved into `KafkaTokenUtil`
* Documentation

## How was this patch tested?

Existing unit tests + on cluster.

Long running Kafka to file tests on 4 node cluster with randomly thrown artificial exceptions.

Test scenario:

* 4 node cluster
* Yarn
* Kafka broker version 2.1.0
* security.protocol = SASL_SSL
* sasl.mechanism = SCRAM-SHA-512

Kafka broker settings:

* delegation.token.expiry.time.ms=600000 (10 min)
* delegation.token.max.lifetime.ms=1200000 (20 min)
* delegation.token.expiry.check.interval.ms=300000 (5 min)

After each 7.5 minutes new delegation token obtained from Kafka broker (10 min * 0.75).
When token expired after 10 minutes (Spark obtains new one and doesn't renew the old), the brokers expiring thread comes after each 5 minutes (invalidates expired tokens) and artificial exception has been thrown inside the Spark application (such case Spark closes connection), then the latest delegation token picked up correctly.

cd docs/
SKIP_API=1 jekyll build
Manual webpage check.

Closes #23929 from gaborgsomogyi/SPARK-27022.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-03-07 11:36:37 -08:00
Wenchen Fan 382d5a82b0 [SPARK-26956][SS] remove streaming output mode from data source v2 APIs
## What changes were proposed in this pull request?

Similar to `SaveMode`, we should remove streaming `OutputMode` from data source v2 API, and use operations that has clear semantic.

The changes are:
1. append mode: create `StreamingWrite` directly. By default, the `WriteBuilder` will create `Write` to append data.
2. complete mode: call `SupportsTruncate#truncate`. Complete mode means truncating all the old data and appending new data of the current epoch. `SupportsTruncate` has exactly the same semantic.
3. update mode: fail. The current streaming framework can't propagate the update keys, so v2 sinks are not able to implement update mode. In the future we can introduce a `SupportsUpdate` trait.

The behavior changes:
1. all the v2 sinks(foreach, console, memory, kafka, noop) don't support update mode. The fact is, previously all the v2 sinks implement the update mode wrong. None of them can really support it.
2. kafka sink doesn't support complete mode. The fact is, the kafka sink can only append data.

## How was this patch tested?

existing tests

Closes #23859 from cloud-fan/update.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2019-03-03 22:20:31 -08:00
liuxian 02bbe977ab [MINOR] Remove unnecessary gets when getting a value from map.
## What changes were proposed in this pull request?

Redundant `get`  when getting a value from `Map` given a key.

## How was this patch tested?

N/A

Closes #23901 from 10110346/removegetfrommap.

Authored-by: liuxian <liu.xian3@zte.com.cn>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-03-01 11:48:07 -06:00
Gabor Somogyi 76e0b6bafb [SPARK-27002][SS] Get kafka delegation tokens right before consumer/producer created
## What changes were proposed in this pull request?

Spark not always picking up the latest Kafka delegation tokens even if a new one properly obtained.
In the PR I'm setting delegation tokens right before `KafkaConsumer` and `KafkaProducer` creation to be on the safe side.

## How was this patch tested?

Long running Kafka to Kafka tests on 4 node cluster with randomly thrown artificial exceptions.

Test scenario:
* 4 node cluster
* Yarn
* Kafka broker version 2.1.0
* security.protocol = SASL_SSL
* sasl.mechanism = SCRAM-SHA-512

Kafka broker settings:
* delegation.token.expiry.time.ms=600000 (10 min)
* delegation.token.max.lifetime.ms=1200000 (20 min)
* delegation.token.expiry.check.interval.ms=300000 (5 min)

After each 7.5 minutes new delegation token obtained from Kafka broker (10 min * 0.75).
But when token expired after 10 minutes (Spark obtains new one and doesn't renew the old), the brokers expiring thread comes after each 5 minutes (invalidates expired tokens) and artificial exception has been thrown inside the Spark application (such case Spark closes connection), then the latest delegation token not always picked up.

Closes #23906 from gaborgsomogyi/SPARK-27002.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-02-27 10:07:02 -08:00
liuxian 7912dbb88f [MINOR] Simplify boolean expression
## What changes were proposed in this pull request?

Comparing whether Boolean expression is equal to true is redundant
For example:
The datatype of `a` is boolean.
Before:
if (a == true)
After:
if (a)

## How was this patch tested?
N/A

Closes #23884 from 10110346/simplifyboolean.

Authored-by: liuxian <liu.xian3@zte.com.cn>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-02-27 08:38:00 -06:00
Wenchen Fan f85ed9a3e5 [SPARK-26785][SQL] data source v2 API refactor: streaming write
## What changes were proposed in this pull request?

Continue the API refactor for streaming write, according to the [doc](https://docs.google.com/document/d/1vI26UEuDpVuOjWw4WPoH2T6y8WAekwtI7qoowhOFnI4/edit?usp=sharing).

The major changes:
1. rename `StreamingWriteSupport` to `StreamingWrite`
2. add `WriteBuilder.buildForStreaming`
3. update existing sinks, to move the creation of `StreamingWrite` to `Table`

## How was this patch tested?

existing tests

Closes #23702 from cloud-fan/stream-write.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2019-02-18 16:17:24 -08:00
Gabor Somogyi 28ced387b9 [SPARK-26772][YARN] Delete ServiceCredentialProvider and make HadoopDelegationTokenProvider a developer API
## What changes were proposed in this pull request?

`HadoopDelegationTokenProvider` has basically the same functionality just like `ServiceCredentialProvider` so the interfaces can be merged.

`YARNHadoopDelegationTokenManager` now loads `ServiceCredentialProvider`s in one step. The drawback of this if one provider fails all others are not loaded. `HadoopDelegationTokenManager` loads `HadoopDelegationTokenProvider`s independently so it provides more robust behaviour.

In this PR I've I've made the following changes:
* Deleted `YARNHadoopDelegationTokenManager` and `ServiceCredentialProvider`
* Made `HadoopDelegationTokenProvider` a `DeveloperApi`

## How was this patch tested?

Existing unit tests.

Closes #23686 from gaborgsomogyi/SPARK-26772.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-02-15 14:43:13 -08:00
Hyukjin Kwon c406472970 [SPARK-26870][SQL] Move to_avro/from_avro into functions object due to Java compatibility
## What changes were proposed in this pull request?

Currently, looks, to use `from_avro` and `to_avro` in Java APIs side,

```java
import static org.apache.spark.sql.avro.package$.MODULE$;

MODULE$.to_avro
MODULE$.from_avro
```

This PR targets to deprecate and move both functions under `avro` package into `functions` object like the way of our `org.apache.spark.sql.functions`.

Therefore, Java side can import:

```java
import static org.apache.spark.sql.avro.functions.*;
```

and Scala side can import:

```scala
import org.apache.spark.sql.avro.functions._
```

## How was this patch tested?

Manually tested, and unit tests for Java APIs were added.

Closes #23784 from HyukjinKwon/SPARK-26870.

Authored-by: Hyukjin Kwon <gurwls223@apache.org>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
2019-02-15 10:24:35 +08:00
Maxim Gekk a829234df3 [SPARK-26817][CORE] Use System.nanoTime to measure time intervals
## What changes were proposed in this pull request?

In the PR, I propose to use `System.nanoTime()` instead of `System.currentTimeMillis()` in measurements of time intervals.

`System.currentTimeMillis()` returns current wallclock time and will follow changes to the system clock. Thus, negative wallclock adjustments can cause timeouts to "hang" for a long time (until wallclock time has caught up to its previous value again). This can happen when ntpd does a "step" after the network has been disconnected for some time. The most canonical example is during system bootup when DHCP takes longer than usual. This can lead to failures that are really hard to understand/reproduce. `System.nanoTime()` is guaranteed to be monotonically increasing irrespective of wallclock changes.

## How was this patch tested?

By existing test suites.

Closes #23727 from MaxGekk/system-nanotime.

Lead-authored-by: Maxim Gekk <max.gekk@gmail.com>
Co-authored-by: Maxim Gekk <maxim.gekk@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-02-13 13:12:16 -06:00
Gabor Somogyi d0443a74d1 [SPARK-26766][CORE] Remove the list of filesystems from HadoopDelegationTokenProvider.obtainDelegationTokens
## What changes were proposed in this pull request?

Delegation token providers interface now has a parameter `fileSystems` but this is needed only for `HadoopFSDelegationTokenProvider`.

In this PR I've addressed this issue in the following way:
* Removed `fileSystems` parameter from `HadoopDelegationTokenProvider`
* Moved `YarnSparkHadoopUtil.hadoopFSsToAccess` into `HadoopFSDelegationTokenProvider`
* Moved `spark.yarn.stagingDir` into core
* Moved `spark.yarn.access.namenodes` into core and renamed to `spark.kerberos.access.namenodes`
* Moved `spark.yarn.access.hadoopFileSystems` into core and renamed to `spark.kerberos.access.hadoopFileSystems`

## How was this patch tested?

Existing unit tests.

Closes #23698 from gaborgsomogyi/SPARK-26766.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-02-08 13:41:52 -08:00
Gengliang Wang 308996bc72 [SPARK-26716][SPARK-26765][FOLLOWUP][SQL] Clean up schema validation methods and override toString method in Avro
## What changes were proposed in this pull request?

In #23639, the API `supportDataType` is refactored. We should also remove the method `verifyWriteSchema` and `verifyReadSchema` in `DataSourceUtils`.

Since the error message use `FileFormat.toString` to specify the data source naming,  this PR also overriding the `toString` method in `AvroFileFormat`.

## How was this patch tested?

Unit test.

Closes #23699 from gengliangwang/SPARK-26716-followup.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-01-31 15:44:44 +08:00
ryne.yang fbc3c5e8a3
[SPARK-26718][SS] Fixed integer overflow in SS kafka rateLimit calculation
## What changes were proposed in this pull request?

Fix the integer overflow issue in rateLimit.

## How was this patch tested?

Pass the Jenkins with newly added UT for the possible case where integer could be overflowed.

Closes #23666 from linehrr/master.

Authored-by: ryne.yang <ryne.yang@acuityads.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2019-01-29 10:58:10 -08:00
Gengliang Wang 1beed0d7c2 [SPARK-26765][SQL] Avro: Validate input and output schema
## What changes were proposed in this pull request?

The API `supportDataType` in `FileFormat` helps to validate the output/input schema before exection starts. So that we can avoid some invalid data source IO, and users can see clean error messages.

This PR is to override the validation API in Avro data source.
Also, as per the spec of Avro(https://avro.apache.org/docs/1.8.2/spec.html), `NullType` is supported. This PR fixes the handling of `NullType`.

## How was this patch tested?

Unit test

Closes #23684 from gengliangwang/avroSupportDataType.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-01-30 00:17:33 +08:00
Wenchen Fan e97ab1d980 [SPARK-26695][SQL] data source v2 API refactor - continuous read
## What changes were proposed in this pull request?

Following https://github.com/apache/spark/pull/23430, this PR does the API refactor for continuous read, w.r.t. the [doc](https://docs.google.com/document/d/1uUmKCpWLdh9vHxP7AWJ9EgbwB_U6T3EJYNjhISGmiQg/edit?usp=sharing)

The major changes:
1. rename `XXXContinuousReadSupport` to `XXXContinuousStream`
2. at the beginning of continuous streaming execution, convert `StreamingRelationV2` to `StreamingDataSourceV2Relation` directly, instead of `StreamingExecutionRelation`.
3. remove all the hacks as we have finished all the read side API refactor

## How was this patch tested?

existing tests

Closes #23619 from cloud-fan/continuous.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2019-01-29 00:07:27 -08:00
Gabor Somogyi 773efede20 [SPARK-26254][CORE] Extract Hive + Kafka dependencies from Core.
## What changes were proposed in this pull request?

There are ugly provided dependencies inside core for the following:
* Hive
* Kafka

In this PR I've extracted them out. This PR contains the following:
* Token providers are now loaded with service loader
* Hive token provider moved to hive project
* Kafka token provider extracted into a new project

## How was this patch tested?

Existing + newly added unit tests.
Additionally tested on cluster.

Closes #23499 from gaborgsomogyi/SPARK-26254.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-01-25 10:36:00 -08:00
Wenchen Fan 098a2c41fc [SPARK-26520][SQL] data source v2 API refactor (micro-batch read)
## What changes were proposed in this pull request?

Following https://github.com/apache/spark/pull/23086, this PR does the API refactor for micro-batch read, w.r.t. the [doc](https://docs.google.com/document/d/1uUmKCpWLdh9vHxP7AWJ9EgbwB_U6T3EJYNjhISGmiQg/edit?usp=sharing)

The major changes:
1. rename `XXXMicroBatchReadSupport` to `XXXMicroBatchReadStream`
2. implement `TableProvider`, `Table`, `ScanBuilder` and `Scan` for streaming sources
3. at the beginning of micro-batch streaming execution, convert `StreamingRelationV2` to `StreamingDataSourceV2Relation` directly, instead of `StreamingExecutionRelation`.

followup:
support operator pushdown for stream sources

## How was this patch tested?

existing tests

Closes #23430 from cloud-fan/micro-batch.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2019-01-21 14:29:12 -08:00
Jungtaek Lim (HeartSaVioR) 2ebb79b2a6
[SPARK-26350][FOLLOWUP] Add actual verification on new UT introduced on SPARK-26350
## What changes were proposed in this pull request?

This patch adds the check to verify consumer group id is given correctly when custom group id is provided to Kafka parameter.

## How was this patch tested?

Modified UT.

Closes #23544 from HeartSaVioR/SPARK-26350-follow-up-actual-verification-on-UT.

Authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan@gmail.com>
Signed-off-by: Shixiong Zhu <zsxwing@gmail.com>
2019-01-15 14:21:51 -08:00
Shixiong Zhu bafc7ac025
[SPARK-26350][SS] Allow to override group id of the Kafka consumer
## What changes were proposed in this pull request?

This PR allows the user to override `kafka.group.id` for better monitoring or security. The user needs to make sure there are not multiple queries or sources using the same group id.

It also fixes a bug that the `groupIdPrefix` option cannot be retrieved.

## How was this patch tested?

The new added unit tests.

Closes #23301 from zsxwing/SPARK-26350.

Authored-by: Shixiong Zhu <zsxwing@gmail.com>
Signed-off-by: Shixiong Zhu <zsxwing@gmail.com>
2019-01-14 13:37:24 -08:00
Oleksii Shkarupin 5b37092311
[SPARK-26538][SQL] Set default precision and scale for elements of postgres numeric array
## What changes were proposed in this pull request?

When determining CatalystType for postgres columns with type `numeric[]` set the type of array element to `DecimalType(38, 18)` instead of `DecimalType(0,0)`.

## How was this patch tested?

Tested with modified `org.apache.spark.sql.jdbc.JDBCSuite`.
Ran the `PostgresIntegrationSuite` manually.

Closes #23456 from a-shkarupin/postgres_numeric_array.

Lead-authored-by: Oleksii Shkarupin <a.shkarupin@gmail.com>
Co-authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2019-01-12 11:06:39 -08:00
Dongjoon Hyun 5969b8a2ed
[SPARK-26541][BUILD] Add -Pdocker-integration-tests to dev/scalastyle
## What changes were proposed in this pull request?

This PR makes `scalastyle` to check `docker-integration-tests` module additionally and fixes one error.

## How was this patch tested?

Pass the Jenkins with the updated Scalastyle.
```
========================================================================
Running Scala style checks
========================================================================
Scalastyle checks passed.
```

Closes #23459 from dongjoon-hyun/SPARK-26541.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2019-01-05 00:55:17 -08:00
Dongjoon Hyun e15a319ccd
[SPARK-26536][BUILD][TEST] Upgrade Mockito to 2.23.4
## What changes were proposed in this pull request?

This PR upgrades Mockito from 1.10.19 to 2.23.4. The following changes are required.

- Replace `org.mockito.Matchers` with `org.mockito.ArgumentMatchers`
- Replace `anyObject` with `any`
- Replace `getArgumentAt` with `getArgument` and add type annotation.
- Use `isNull` matcher in case of `null` is invoked.
```scala
     saslHandler.channelInactive(null);
-    verify(handler).channelInactive(any(TransportClient.class));
+    verify(handler).channelInactive(isNull());
```

- Make and use `doReturn` wrapper to avoid [SI-4775](https://issues.scala-lang.org/browse/SI-4775)
```scala
private def doReturn(value: Any) = org.mockito.Mockito.doReturn(value, Seq.empty: _*)
```

## How was this patch tested?

Pass the Jenkins with the existing tests.

Closes #23452 from dongjoon-hyun/SPARK-26536.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2019-01-04 19:23:38 -08:00
Dongjoon Hyun ceff0c8450
[SPARK-26428][SS][TEST] Minimize deprecated ProcessingTime usage
## What changes were proposed in this pull request?

Use of `ProcessingTime` class was deprecated in favor of `Trigger.ProcessingTime` in Spark 2.2. And, [SPARK-21464](https://issues.apache.org/jira/browse/SPARK-21464) minimized it at 2.2.1. Recently, it grows again in test suites. This PR aims to clean up newly introduced deprecation warnings for Spark 3.0.

## How was this patch tested?

Pass the Jenkins with existing tests and manually check the warnings.

Closes #23367 from dongjoon-hyun/SPARK-26428.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-12-22 00:43:59 -08:00
Shixiong Zhu 8e76d6621a
[SPARK-26267][SS] Retry when detecting incorrect offsets from Kafka
## What changes were proposed in this pull request?

Due to [KAFKA-7703](https://issues.apache.org/jira/browse/KAFKA-7703), Kafka may return an earliest offset when we are request a latest offset. This will cause Spark to reprocess data.

As per suggestion in KAFKA-7703, we put a position call between poll and seekToEnd to block the fetch request triggered by `poll` before calling `seekToEnd`.

In addition, to avoid other unknown issues, we also use the previous known offsets to audit the latest offsets returned by Kafka. If we find some incorrect offsets (a latest offset is less than an offset in `knownOffsets`), we will retry at most `maxOffsetFetchAttempts` times.

## How was this patch tested?

Jenkins

Closes #23324 from zsxwing/SPARK-26267.

Authored-by: Shixiong Zhu <zsxwing@gmail.com>
Signed-off-by: Shixiong Zhu <zsxwing@gmail.com>
2018-12-21 10:41:25 -08:00
Vaclav Kosar 81d377d772 [SPARK-24933][SS] Report numOutputRows in SinkProgress
## What changes were proposed in this pull request?

SinkProgress should report similar properties like SourceProgress as long as they are available for given Sink. Count of written rows is metric availble for all Sinks. Since relevant progress information is with respect to commited rows, ideal object to carry this info is WriterCommitMessage. For brevity the implementation will focus only on Sinks with API V2 and on Micro Batch mode. Implemention for Continuous mode will be provided at later date.

### Before
```
{"description":"org.apache.spark.sql.kafka010.KafkaSourceProvider3c0bd317"}
```

### After
```
{"description":"org.apache.spark.sql.kafka010.KafkaSourceProvider3c0bd317","numOutputRows":5000}
```

### This PR is related to:
- https://issues.apache.org/jira/browse/SPARK-24647
- https://issues.apache.org/jira/browse/SPARK-21313

## How was this patch tested?

Existing and new unit tests.

Please review http://spark.apache.org/contributing.html before opening a pull request.

Closes #21919 from vackosar/feature/SPARK-24933-numOutputRows.

Lead-authored-by: Vaclav Kosar <admin@vaclavkosar.com>
Co-authored-by: Kosar, Vaclav: Functions Transformation <Vaclav.Kosar@barclayscapital.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2018-12-17 11:50:24 -08:00
Gabor Somogyi 5a116e669c
[SPARK-26371][SS] Increase kafka ConfigUpdater test coverage.
## What changes were proposed in this pull request?

As Kafka delegation token added logic into ConfigUpdater it would be good to test it.
This PR contains the following changes:
* ConfigUpdater extracted to a separate file and renamed to KafkaConfigUpdater
* mockito-core dependency added to kafka-0-10-sql
* Unit tests added

## How was this patch tested?

Existing + new unit tests + on cluster.

Closes #23321 from gaborgsomogyi/SPARK-26371.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-12-17 10:07:35 -08:00
jasonwayne 9c481c7a6b [SPARK-26360] remove redundant validateQuery call
## What changes were proposed in this pull request?
remove a redundant `KafkaWriter.validateQuery` call in `KafkaSourceProvider `

## How was this patch tested?
Just removing duplicate codes, so I just build and run unit tests.

Closes #23309 from JasonWayne/SPARK-26360.

Authored-by: jasonwayne <wuwenjie0102@gmail.com>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
2018-12-14 10:47:58 +08:00
Gabor Somogyi 6daa783094 [SPARK-26322][SS] Add spark.kafka.sasl.token.mechanism to ease delegation token configuration.
## What changes were proposed in this pull request?

When Kafka delegation token obtained, SCRAM `sasl.mechanism` has to be configured for authentication. This can be configured on the related source/sink which is inconvenient from user perspective. Such granularity is not required and this configuration can be implemented with one central parameter.

In this PR `spark.kafka.sasl.token.mechanism` added to configure this centrally (default: `SCRAM-SHA-512`).

## How was this patch tested?

Existing unit tests + on cluster.

Closes #23274 from gaborgsomogyi/SPARK-26322.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2018-12-12 16:45:50 -08:00
Gabor Somogyi 9b1f6c8bab [SPARK-26304][SS] Add default value to spark.kafka.sasl.kerberos.service.name parameter
## What changes were proposed in this pull request?

spark.kafka.sasl.kerberos.service.name is an optional parameter but most of the time value `kafka` has to be set. As I've written in the jira the following reasoning is behind:
* Kafka's configuration guide suggest the same value: https://kafka.apache.org/documentation/#security_sasl_kerberos_brokerconfig
* It would be easier for spark users by providing less configuration
* Other streaming engines are doing the same

In this PR I've changed the parameter from optional to `WithDefault` and set `kafka` as default value.

## How was this patch tested?

Available unit tests + on cluster.

Closes #23254 from gaborgsomogyi/SPARK-26304.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2018-12-07 13:58:02 -08:00
Wenchen Fan 2b2c94a3ee [SPARK-25528][SQL] data source v2 API refactor (batch read)
## What changes were proposed in this pull request?

This is the first step of the data source v2 API refactor [proposal](https://docs.google.com/document/d/1uUmKCpWLdh9vHxP7AWJ9EgbwB_U6T3EJYNjhISGmiQg/edit?usp=sharing)

It adds the new API for batch read, without removing the old APIs, as they are still needed for streaming sources.

More concretely, it adds
1. `TableProvider`, works like an anonymous catalog
2. `Table`, represents a structured data set.
3. `ScanBuilder` and `Scan`, a logical represents of data source scan
4. `Batch`, a physical representation of data source batch scan.

## How was this patch tested?

existing tests

Closes #23086 from cloud-fan/refactor-batch.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2018-11-30 00:02:43 -08:00
Gabor Somogyi 0166c7373e [SPARK-25501][SS] Add kafka delegation token support.
## What changes were proposed in this pull request?

It adds kafka delegation token support for structured streaming. Please see the relevant [SPIP](https://docs.google.com/document/d/1ouRayzaJf_N5VQtGhVq9FURXVmRpXzEEWYHob0ne3NY/edit?usp=sharing)

What this PR contains:
* Configuration parameters for the feature
* Delegation token fetching from broker
* Usage of token through dynamic JAAS configuration
* Minor refactoring in the existing code

What this PR doesn't contain:
* Documentation changes because design can change

## How was this patch tested?

Existing tests + added small amount of additional unit tests.

Because it's an external service integration mainly tested on cluster.
* 4 node cluster
* Kafka broker version 1.1.0
* Topic with 4 partitions
* security.protocol = SASL_SSL
* sasl.mechanism = SCRAM-SHA-256

An example of obtaining a token:
```
18/10/01 01:07:49 INFO kafka010.TokenUtil: TOKENID         HMAC                           OWNER           RENEWERS                  ISSUEDATE       EXPIRYDATE      MAXDATE
18/10/01 01:07:49 INFO kafka010.TokenUtil: D1-v__Q5T_uHx55rW16Jwg [hidden] User:user    []                        2018-10-01T01:07 2018-10-02T01:07 2018-10-08T01:07
18/10/01 01:07:49 INFO security.KafkaDelegationTokenProvider: Get token from Kafka: Kind: KAFKA_DELEGATION_TOKEN, Service: kafka.server.delegation.token, Ident: 44 31 2d 76 5f 5f 51 35 54 5f 75 48 78 35 35 72 57 31 36 4a 77 67
```

An example token usage:
```
18/10/01 01:08:07 INFO kafka010.KafkaSecurityHelper: Scram JAAS params: org.apache.kafka.common.security.scram.ScramLoginModule required tokenauth=true serviceName="kafka" username="D1-v__Q5T_uHx55rW16Jwg" password="[hidden]";
18/10/01 01:08:07 INFO kafka010.KafkaSourceProvider: Delegation token detected, using it for login.
```

Closes #22598 from gaborgsomogyi/SPARK-25501.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2018-11-29 18:00:47 -08:00
Wenchen Fan fa0d4bf699 [SPARK-25829][SQL] remove duplicated map keys with last wins policy
## What changes were proposed in this pull request?

Currently duplicated map keys are not handled consistently. For example, map look up respects the duplicated key appears first, `Dataset.collect` only keeps the duplicated key appears last, `MapKeys` returns duplicated keys, etc.

This PR proposes to remove duplicated map keys with last wins policy, to follow Java/Scala and Presto. It only applies to built-in functions, as users can create map with duplicated map keys via private APIs anyway.

updated functions: `CreateMap`, `MapFromArrays`, `MapFromEntries`, `StringToMap`, `MapConcat`, `TransformKeys`.

For other places:
1. data source v1 doesn't have this problem, as users need to provide a java/scala map, which can't have duplicated keys.
2. data source v2 may have this problem. I've added a note to `ArrayBasedMapData` to ask the caller to take care of duplicated keys. In the future we should enforce it in the stable data APIs for data source v2.
3. UDF doesn't have this problem, as users need to provide a java/scala map. Same as data source v1.
4. file format. I checked all of them and only parquet does not enforce it. For backward compatibility reasons I change nothing but leave a note saying that the behavior will be undefined if users write map with duplicated keys to parquet files. Maybe we can add a config and fail by default if parquet files have map with duplicated keys. This can be done in followup.

## How was this patch tested?

updated tests and new tests

Closes #23124 from cloud-fan/map.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-11-28 23:42:13 +08:00
Anastasios Zouzias 2512a1d429 [SPARK-26121][STRUCTURED STREAMING] Allow users to define prefix of Kafka's consumer group (group.id)
## What changes were proposed in this pull request?

Allow the Spark Structured Streaming user to specify the prefix of the consumer group (group.id), compared to force consumer group ids of the form `spark-kafka-source-*`

## How was this patch tested?

Unit tests provided by Spark (backwards compatible change, i.e., user can optionally use the functionality)

`mvn test -pl external/kafka-0-10`

Closes #23103 from zouzias/SPARK-26121.

Authored-by: Anastasios Zouzias <anastasios@sqooba.io>
Signed-off-by: cody koeninger <cody@koeninger.org>
2018-11-26 11:10:38 -06:00
Dongjoon Hyun 1d3dd58d21
[SPARK-25954][SS][FOLLOWUP][TEST-MAVEN] Add Zookeeper 3.4.7 test dependency to Kafka modules
## What changes were proposed in this pull request?

This is a followup of #23099 . After upgrading to Kafka 2.1.0, maven test fails due to Zookeeper test dependency while sbt test succeeds.

- [sbt test on master branch](https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-sbt-hadoop-2.7/5203/)
- [maven test on master branch](https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-maven-hadoop-2.7/5653/)

The root cause is that the embedded Kafka server is using [Zookeepr 3.4.7 API](https://zookeeper.apache.org/doc/r3.4.7/api/org/apache/zookeeper/AsyncCallback.MultiCallback.html
) while Apache Spark provides Zookeeper 3.4.6. This PR adds a test dependency.

```
KafkaMicroBatchV2SourceSuite:
*** RUN ABORTED ***
...
org.apache.spark.sql.kafka010.KafkaTestUtils.setupEmbeddedKafkaServer(KafkaTestUtils.scala:123)
  ...
  Cause: java.lang.ClassNotFoundException: org.apache.zookeeper.AsyncCallback$MultiCallback
  at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
  at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
  at kafka.zk.KafkaZkClient$.apply(KafkaZkClient.scala:1693)
  at kafka.server.KafkaServer.createZkClient$1(KafkaServer.scala:348)
  at kafka.server.KafkaServer.initZkClient(KafkaServer.scala:372)
  at kafka.server.KafkaServer.startup(KafkaServer.scala:202)
  at org.apache.spark.sql.kafka010.KafkaTestUtils.$anonfun$setupEmbeddedKafkaServer$2(KafkaTestUtils.scala:120)
  at org.apache.spark.sql.kafka010.KafkaTestUtils.$anonfun$setupEmbeddedKafkaServer$2$adapted(KafkaTestUtils.scala:116)
  ...
```

## How was this patch tested?

Pass the maven Jenkins test.

Closes #23119 from dongjoon-hyun/SPARK-25954-2.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-11-22 22:45:08 -08:00
Dongjoon Hyun a480a62563
[SPARK-25954][SS] Upgrade to Kafka 2.1.0
## What changes were proposed in this pull request?

[Kafka 2.1.0 vote](https://lists.apache.org/thread.html/9f487094491e512b556a1c9c3c6034ac642b088e3f797e3d192ebc9d%3Cdev.kafka.apache.org%3E) passed. Since Kafka 2.1.0 includes official JDK 11 support [KAFKA-7264](https://issues.apache.org/jira/browse/KAFKA-7264), we had better use that.

## How was this patch tested?

Pass the Jenkins.

Closes #23099 from dongjoon-hyun/SPARK-25954.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-11-21 00:24:34 -08:00
Sean Owen 32365f8177 [SPARK-26090][CORE][SQL][ML] Resolve most miscellaneous deprecation and build warnings for Spark 3
## What changes were proposed in this pull request?

The build has a lot of deprecation warnings. Some are new in Scala 2.12 and Java 11. We've fixed some, but I wanted to take a pass at fixing lots of easy miscellaneous ones here.

They're too numerous and small to list here; see the pull request. Some highlights:

- `BeanInfo` is deprecated in 2.12, and BeanInfo classes are pretty ancient in Java. Instead, case classes can explicitly declare getters
- Eta expansion of zero-arg methods; foo() becomes () => foo() in many cases
- Floating-point Range is inexact and deprecated, like 0.0 to 100.0 by 1.0
- finalize() is finally deprecated (just needs to be suppressed)
- StageInfo.attempId was deprecated and easiest to remove here

I'm not now going to touch some chunks of deprecation warnings:

- Parquet deprecations
- Hive deprecations (particularly serde2 classes)
- Deprecations in generated code (mostly Thriftserver CLI)
- ProcessingTime deprecations (we may need to revive this class as internal)
- many MLlib deprecations because they concern methods that may be removed anyway
- a few Kinesis deprecations I couldn't figure out
- Mesos get/setRole, which I don't know well
- Kafka/ZK deprecations (e.g. poll())
- Kinesis
- a few other ones that will probably resolve by deleting a deprecated method

## How was this patch tested?

Existing tests, including manual testing with the 2.11 build and Java 11.

Closes #23065 from srowen/SPARK-26090.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-11-19 09:16:42 -06:00
Sean Owen 630e25e355 [SPARK-26026][BUILD] Published Scaladoc jars missing from Maven Central
## What changes were proposed in this pull request?

This restores scaladoc artifact generation, which got dropped with the Scala 2.12 update. The change looks large, but is almost all due to needing to make the InterfaceStability annotations top-level classes (i.e. `InterfaceStability.Stable` -> `Stable`), unfortunately. A few inner class references had to be qualified too.

Lots of scaladoc warnings now reappear. We can choose to disable generation by default and enable for releases, later.

## How was this patch tested?

N/A; build runs scaladoc now.

Closes #23069 from srowen/SPARK-26026.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-11-19 08:06:33 -06:00
DB Tsai ad853c5678
[SPARK-25956] Make Scala 2.12 as default Scala version in Spark 3.0
## What changes were proposed in this pull request?

This PR makes Spark's default Scala version as 2.12, and Scala 2.11 will be the alternative version. This implies that Scala 2.12 will be used by our CI builds including pull request builds.

We'll update the Jenkins to include a new compile-only jobs for Scala 2.11 to ensure the code can be still compiled with Scala 2.11.

## How was this patch tested?

existing tests

Closes #22967 from dbtsai/scala2.12.

Authored-by: DB Tsai <d_tsai@apple.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-11-14 16:22:23 -08:00
Yuanjian Li 2977e2312d [SPARK-25986][BUILD] Add rules to ban throw Errors in application code
## What changes were proposed in this pull request?

Add scala and java lint check rules to ban the usage of `throw new xxxErrors` and fix up all exists instance followed by https://github.com/apache/spark/pull/22989#issuecomment-437939830. See more details in https://github.com/apache/spark/pull/22969.

## How was this patch tested?

Local test with lint-scala and lint-java.

Closes #22989 from xuanyuanking/SPARK-25986.

Authored-by: Yuanjian Li <xyliyuanjian@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-11-14 13:05:18 -08:00
Gengliang Wang 922dfe4865
[SPARK-25965][SQL][TEST] Add avro read benchmark
Add read benchmark for Avro, which is missing for a period.
The benchmark is similar to `DataSourceReadBenchmark` and `OrcReadBenchmark`

Manually run benchmark

Closes #22966 from gengliangwang/avroReadBenchmark.

Lead-authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Co-authored-by: Gengliang Wang <ltnwgl@gmail.com>
Co-authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-11-14 11:26:26 -08:00
Sean Owen 2d085c13b7 [SPARK-25984][CORE][SQL][STREAMING] Remove deprecated .newInstance(), primitive box class constructor calls
## What changes were proposed in this pull request?

Deprecated in Java 11, replace Class.newInstance with Class.getConstructor.getInstance, and primtive wrapper class constructors with valueOf or equivalent

## How was this patch tested?

Existing tests.

Closes #22988 from srowen/SPARK-25984.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-11-10 09:52:14 -06:00
Gengliang Wang 57eddc7182 [SPARK-25886][SQL][MINOR] Improve error message of FailureSafeParser and from_avro in FAILFAST mode
## What changes were proposed in this pull request?

Currently in `FailureSafeParser` and `from_avro`, the exception is created with such code
```
throw new SparkException("Malformed records are detected in record parsing. " +
s"Parse Mode: ${FailFastMode.name}.", e.cause)
```

1. The cause part should be `e` instead of `e.cause`
2. If `e` contains non-null message, it should be shown in `from_json`/`from_csv`/`from_avro`, e.g.
```
com.fasterxml.jackson.core.JsonParseException: Unexpected character ('1' (code 49)): was expecting a colon to separate field name and value
at [Source: (InputStreamReader); line: 1, column: 7]
```
3.Kindly show hint for trying PERMISSIVE in error message.

## How was this patch tested?
Unit test.

Closes #22895 from gengliangwang/improve_error_msg.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-10-31 20:22:57 +08:00
yucai f8484e49ef
[SPARK-25663][SPARK-25661][SQL][TEST] Refactor BuiltInDataSourceWriteBenchmark, DataSourceWriteBenchmark and AvroWriteBenchmark to use main method
## What changes were proposed in this pull request?

Refactor BuiltInDataSourceWriteBenchmark, DataSourceWriteBenchmark and AvroWriteBenchmark to use main method.

```
SPARK_GENERATE_BENCHMARK_FILES=1 build/sbt "sql/test:runMain org.apache.spark.sql.execution.benchmark.BuiltInDataSourceWriteBenchmark"

SPARK_GENERATE_BENCHMARK_FILES=1 build/sbt "avro/test:runMain org.apache.spark.sql.execution.benchmark.AvroWriteBenchmark"
```
## How was this patch tested?

manual tests

Closes #22861 from yucai/BuiltInDataSourceWriteBenchmark.

Lead-authored-by: yucai <yyu1@ebay.com>
Co-authored-by: Yucai Yu <yucai.yu@foxmail.com>
Co-authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-10-31 03:03:42 -07:00
Dilip Biswal 34c3bc9f1e
[SPARK-25618][SQL][TEST] Reduce time taken to execute KafkaContinuousSourceStressForDontFailOnDataLossSuite
## What changes were proposed in this pull request?
In this test, i have reduced the test time to 20 secs from 1 minute while reducing the sleep time from 1 sec to 100 milliseconds.

With this change, i was able to run the test in 20+ seconds consistently on my laptop. I would like see if it passes in jenkins consistently.

## How was this patch tested?
Its a test fix.

Closes #22900 from dilipbiswal/SPARK-25618.

Authored-by: Dilip Biswal <dbiswal@us.ibm.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-10-31 02:57:39 -07:00
Gengliang Wang 0ad93b0931 [SPARK-25883][SQL][MINOR] Override method prettyName in from_avro/to_avro
## What changes were proposed in this pull request?

Previously in from_avro/to_avro, we override the method `simpleString` and `sql` for the string output. However, the override only affects the alias naming:
```
Project [from_avro('col,
...
, (mode,PERMISSIVE)) AS from_avro(col, struct<col1:bigint,col2:double>, Map(mode -> PERMISSIVE))#11]
```
It only makes the alias name quite long: `from_avro(col, struct<col1:bigint,col2:double>, Map(mode -> PERMISSIVE))`).

We should follow `from_csv`/`from_json` here, to override the method prettyName only, and we will get a clean alias name

```
... AS from_avro(col)#11
```

## How was this patch tested?

Manual check

Closes #22890 from gengliangwang/revise_from_to_avro.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2018-10-30 23:59:37 -07:00
Gengliang Wang 24e8c27dfe [SPARK-25819][SQL] Support parse mode option for the function from_avro
## What changes were proposed in this pull request?

Current the function `from_avro` throws exception on reading corrupt records.
In practice, there could be various reasons of data corruption. It would be good to support `PERMISSIVE` mode and allow the function from_avro to process all the input file/streaming, which is consistent with from_json and from_csv. There is no obvious down side for supporting `PERMISSIVE` mode.

Different from `from_csv` and `from_json`, the default parse mode is `FAILFAST` for the following reasons:
1. Since Avro is structured data format, input data is usually able to be parsed by certain schema.  In such case, exposing the problems of input data to users is better than hiding it.
2. For `PERMISSIVE` mode, we have to force the data schema as fully nullable. This seems quite unnecessary for Avro. Reversing non-null schema might archive more perf optimizations in Spark.
3. To be consistent with the behavior in Spark 2.4 .

## How was this patch tested?

Unit test

Manual previewing generated html for the Avro data source doc:

![image](https://user-images.githubusercontent.com/1097932/47510100-02558880-d8aa-11e8-9d57-a43daee4c6b9.png)

Closes #22814 from gengliangwang/improve_from_avro.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-10-26 11:39:38 +08:00
Sean Owen f83fedc9f2 [SPARK-25737][CORE] Remove JavaSparkContextVarargsWorkaround
## What changes were proposed in this pull request?

Remove JavaSparkContextVarargsWorkaround

## How was this patch tested?

Existing tests.

Closes #22729 from srowen/SPARK-25737.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-10-24 14:43:51 -05:00
Sean Owen 734c6af0dd [SPARK-24601][FOLLOWUP] Update Jackson to 2.9.6 in Kinesis
## What changes were proposed in this pull request?

Also update Kinesis SDK's Jackson to match Spark's

## How was this patch tested?

Existing tests, including Kinesis ones, which ought to be hereby triggered.
This was uncovered, I believe, in https://github.com/apache/spark/pull/22729#issuecomment-430666080

Closes #22757 from srowen/SPARK-24601.2.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-10-18 07:00:00 -05:00
Takeshi Yamamuro a9f685bb70 [SPARK-25734][SQL] Literal should have a value corresponding to dataType
## What changes were proposed in this pull request?
`Literal.value` should have a value a value corresponding to `dataType`. This pr added code to verify it and fixed the existing tests to do so.

## How was this patch tested?
Modified the existing tests.

Closes #22724 from maropu/SPARK-25734.

Authored-by: Takeshi Yamamuro <yamamuro@apache.org>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-10-17 11:02:39 +08:00
Dilip Biswal 9d4dd7992b [SPARK-25631][SPARK-25632][SQL][TEST] Improve the test runtime of KafkaRDDSuite
## What changes were proposed in this pull request?
Set a reasonable poll timeout thats used while consuming topics/partitions from kafka. In the
absence of it, a default of 2 minute is used as the timeout values. And all the negative tests take a minimum of 2 minute to execute.

After this change, we save about 4 minutes in this suite.

## How was this patch tested?
Test fix.

Closes #22670 from dilipbiswal/SPARK-25631.

Authored-by: Dilip Biswal <dbiswal@us.ibm.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-10-16 17:49:40 -05:00
Sean Owen 703e6da1ec [SPARK-25705][BUILD][STREAMING][TEST-MAVEN] Remove Kafka 0.8 integration
## What changes were proposed in this pull request?

Remove Kafka 0.8 integration

## How was this patch tested?

Existing tests, build scripts

Closes #22703 from srowen/SPARK-25705.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-10-16 09:10:24 -05:00
Gengliang Wang 2eaf058788 [SPARK-25718][SQL] Detect recursive reference in Avro schema and throw exception
## What changes were proposed in this pull request?

Avro schema allows recursive reference, e.g. the schema for linked-list in https://avro.apache.org/docs/1.8.2/spec.html#schema_record
```
{
  "type": "record",
  "name": "LongList",
  "aliases": ["LinkedLongs"],                      // old name for this
  "fields" : [
    {"name": "value", "type": "long"},             // each element has a long
    {"name": "next", "type": ["null", "LongList"]} // optional next element
  ]
}
```

In current Spark SQL, it is impossible to convert the schema as `StructType` . Run `SchemaConverters.toSqlType(avroSchema)` and we will get stack overflow exception.

We should detect the recursive reference and throw exception for it.
## How was this patch tested?

New unit test case.

Closes #22709 from gengliangwang/avroRecursiveRef.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-10-13 14:49:38 +08:00
Sean Owen a001814189 [SPARK-25598][STREAMING][BUILD][TEST-MAVEN] Remove flume connector in Spark 3
## What changes were proposed in this pull request?

Removes all vestiges of Flume in the build, for Spark 3.
I don't think this needs Jenkins config changes.

## How was this patch tested?

Existing tests.

Closes #22692 from srowen/SPARK-25598.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-10-11 14:28:06 -07:00
Dilip Biswal adf648b5be [SPARK-25615][SQL][TEST] Improve the test runtime of KafkaSinkSuite: streaming write to non-existing topic
## What changes were proposed in this pull request?
Specify `kafka.max.block.ms` to 10 seconds while creating the kafka writer. In the absence of this overridden config, by default it uses a default time out of 60 seconds.

With this change the test completes in close to 10 seconds as opposed to 1 minute.

## How was this patch tested?
This is a test fix.

Closes #22671 from dilipbiswal/SPARK-25615.

Authored-by: Dilip Biswal <dbiswal@us.ibm.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-10-11 14:10:07 -07:00
Dongjoon Hyun 9cbf105ab1
[SPARK-25644][SS][FOLLOWUP][BUILD] Fix Scala 2.12 build error due to foreachBatch
## What changes were proposed in this pull request?

This PR fixes the Scala-2.12 build error due to ambiguity in `foreachBatch` test cases.
- https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-maven-hadoop-2.7-ubuntu-scala-2.12/428/console
```scala
[error] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7-ubuntu-scala-2.12/sql/core/src/test/scala/org/apache/spark/sql/execution/streaming/sources/ForeachBatchSinkSuite.scala:102: ambiguous reference to overloaded definition,
[error] both method foreachBatch in class DataStreamWriter of type (function: org.apache.spark.api.java.function.VoidFunction2[org.apache.spark.sql.Dataset[Int],Long])org.apache.spark.sql.streaming.DataStreamWriter[Int]
[error] and  method foreachBatch in class DataStreamWriter of type (function: (org.apache.spark.sql.Dataset[Int], Long) => Unit)org.apache.spark.sql.streaming.DataStreamWriter[Int]
[error] match argument types ((org.apache.spark.sql.Dataset[Int], Any) => Unit)
[error]       ds.writeStream.foreachBatch((_, _) => {}).trigger(Trigger.Continuous("1 second")).start()
[error]                      ^
[error] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7-ubuntu-scala-2.12/sql/core/src/test/scala/org/apache/spark/sql/execution/streaming/sources/ForeachBatchSinkSuite.scala:106: ambiguous reference to overloaded definition,
[error] both method foreachBatch in class DataStreamWriter of type (function: org.apache.spark.api.java.function.VoidFunction2[org.apache.spark.sql.Dataset[Int],Long])org.apache.spark.sql.streaming.DataStreamWriter[Int]
[error] and  method foreachBatch in class DataStreamWriter of type (function: (org.apache.spark.sql.Dataset[Int], Long) => Unit)org.apache.spark.sql.streaming.DataStreamWriter[Int]
[error] match argument types ((org.apache.spark.sql.Dataset[Int], Any) => Unit)
[error]       ds.writeStream.foreachBatch((_, _) => {}).partitionBy("value").start()
[error]                      ^
```

## How was this patch tested?

Manual.

Since this failure occurs in Scala-2.12 profile and test cases, Jenkins will not test this. We need to build with Scala-2.12 and run the tests.

Closes #22649 from dongjoon-hyun/SPARK-SCALA212.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-10-06 09:40:42 -07:00
gatorsmile 7ef65c0537 [HOT-FIX] Fix compilation errors. 2018-10-06 08:50:50 -07:00
gatorsmile 44cf800c83 [SPARK-25655][BUILD] Add -Pspark-ganglia-lgpl to the scala style check.
## What changes were proposed in this pull request?
Our lint failed due to the following errors:
```
[INFO] --- scalastyle-maven-plugin:1.0.0:check (default)  spark-ganglia-lgpl_2.11 ---
error file=/home/jenkins/workspace/spark-master-maven-snapshots/spark/external/spark-ganglia-lgpl/src/main/scala/org/apache/spark/metrics/sink/GangliaSink.scala message=
      Are you sure that you want to use toUpperCase or toLowerCase without the root locale? In most cases, you
      should use toUpperCase(Locale.ROOT) or toLowerCase(Locale.ROOT) instead.
      If you must use toUpperCase or toLowerCase without the root locale, wrap the code block with
      // scalastyle:off caselocale
      .toUpperCase
      .toLowerCase
      // scalastyle:on caselocale
     line=67 column=49
error file=/home/jenkins/workspace/spark-master-maven-snapshots/spark/external/spark-ganglia-lgpl/src/main/scala/org/apache/spark/metrics/sink/GangliaSink.scala message=
      Are you sure that you want to use toUpperCase or toLowerCase without the root locale? In most cases, you
      should use toUpperCase(Locale.ROOT) or toLowerCase(Locale.ROOT) instead.
      If you must use toUpperCase or toLowerCase without the root locale, wrap the code block with
      // scalastyle:off caselocale
      .toUpperCase
      .toLowerCase
      // scalastyle:on caselocale
     line=71 column=32
Saving to outputFile=/home/jenkins/workspace/spark-master-maven-snapshots/spark/external/spark-ganglia-lgpl/target/scalastyle-output.xml
```

See https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Compile/job/spark-master-lint/8890/

## How was this patch tested?
N/A

Closes #22647 from gatorsmile/fixLint.

Authored-by: gatorsmile <gatorsmile@gmail.com>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-10-06 14:25:48 +08:00
Gengliang Wang 928d0739c4 [SPARK-25595] Ignore corrupt Avro files if flag IGNORE_CORRUPT_FILES enabled
## What changes were proposed in this pull request?

With flag `IGNORE_CORRUPT_FILES` enabled, schema inference should ignore corrupt Avro files, which is consistent with Parquet and Orc data source.

## How was this patch tested?

Unit test

Closes #22611 from gengliangwang/ignoreCorruptAvro.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-10-03 17:08:55 +08:00
gatorsmile 9bf397c0e4 [SPARK-25592] Setting version to 3.0.0-SNAPSHOT
## What changes were proposed in this pull request?

This patch is to bump the master branch version to 3.0.0-SNAPSHOT.

## How was this patch tested?
N/A

Closes #22606 from gatorsmile/bump3.0.

Authored-by: gatorsmile <gatorsmile@gmail.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2018-10-02 08:48:24 -07:00
seancxmao 21f0b73dbc [SPARK-25453][SQL][TEST][.FFFFFFFFF] OracleIntegrationSuite IllegalArgumentException: Timestamp format must be yyyy-mm-dd hh:mm:ss
## What changes were proposed in this pull request?
This PR aims to fix the failed test of `OracleIntegrationSuite`.

## How was this patch tested?
Existing integration tests.

Closes #22461 from seancxmao/SPARK-25453.

Authored-by: seancxmao <seancxmao@gmail.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2018-09-30 22:49:14 -07:00
Shixiong Zhu 66d29870c0
[SPARK-25495][SS] FetchedData.reset should reset all fields
## What changes were proposed in this pull request?

`FetchedData.reset` should reset `_nextOffsetInFetchedData` and `_offsetAfterPoll`. Otherwise it will cause inconsistent cached data and may make Kafka connector return wrong results.

## How was this patch tested?

The new unit test.

Closes #22507 from zsxwing/fix-kafka-reset.

Lead-authored-by: Shixiong Zhu <zsxwing@gmail.com>
Co-authored-by: Shixiong Zhu <shixiong@databricks.com>
Signed-off-by: Shixiong Zhu <zsxwing@gmail.com>
2018-09-25 11:42:27 -07:00
Gengliang Wang 950ab79957 [SPARK-24777][SQL] Add write benchmark for AVRO
## What changes were proposed in this pull request?

Refactor `DataSourceWriteBenchmark` and add write benchmark for AVRO.

## How was this patch tested?

Build and run the benchmark.

Closes #22451 from gengliangwang/avroWriteBenchmark.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2018-09-20 17:41:24 -07:00
Wenchen Fan a71f6a1750 [SPARK-25414][SS][TEST] make it clear that the numRows metrics should be counted for each scan of the source
## What changes were proposed in this pull request?

For self-join/self-union, Spark will produce a physical plan which has multiple `DataSourceV2ScanExec` instances referring to the same `ReadSupport` instance. In this case, the streaming source is indeed scanned multiple times, and the `numInputRows` metrics should be counted for each scan.

Actually we already have 2 test cases to verify the behavior:
1. `StreamingQuerySuite.input row calculation with same V2 source used twice in self-join`
2. `KafkaMicroBatchSourceSuiteBase.ensure stream-stream self-join generates only one offset in log and correct metrics`.

However, in these 2 tests, the expected result is different, which is super confusing. It turns out that, the first test doesn't trigger exchange reuse, so the source is scanned twice. The second test triggers exchange reuse, and the source is scanned only once.

This PR proposes to improve these 2 tests, to test with/without exchange reuse.

## How was this patch tested?

test only change

Closes #22402 from cloud-fan/bug.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-09-20 00:29:48 +08:00
gatorsmile bb2f069cf2 [SPARK-25436] Bump master branch version to 2.5.0-SNAPSHOT
## What changes were proposed in this pull request?
In the dev list, we can still discuss whether the next version is 2.5.0 or 3.0.0. Let us first bump the master branch version to `2.5.0-SNAPSHOT`.

## How was this patch tested?
N/A

Closes #22426 from gatorsmile/bumpVersionMaster.

Authored-by: gatorsmile <gatorsmile@gmail.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2018-09-15 16:24:02 -07:00
Kazuaki Ishizaki f60cd7cc3c
[SPARK-25338][TEST] Ensure to call super.beforeAll() and super.afterAll() in test cases
## What changes were proposed in this pull request?

This PR ensures to call `super.afterAll()` in `override afterAll()` method for test suites.

* Some suites did not call `super.afterAll()`
* Some suites may call `super.afterAll()` only under certain condition
* Others never call `super.afterAll()`.

This PR also ensures to call `super.beforeAll()` in `override beforeAll()` for test suites.

## How was this patch tested?

Existing UTs

Closes #22337 from kiszk/SPARK-25338.

Authored-by: Kazuaki Ishizaki <ishizaki@jp.ibm.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-09-13 11:34:22 -07:00
Lee Dongjin 458f5011bd [MINOR][SS] Fix kafka-0-10-sql trivials
## What changes were proposed in this pull request?

Fix unused imports & outdated comments on `kafka-0-10-sql` module. (Found while I was working on [SPARK-23539](https://github.com/apache/spark/pull/22282))

## How was this patch tested?

Existing unit tests.

Closes #22342 from dongjinleekr/feature/fix-kafka-sql-trivials.

Authored-by: Lee Dongjin <dongjin@apache.org>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-09-07 10:36:15 -07:00
Shixiong Zhu 2119e518d3 [SPARK-25336][SS]Revert SPARK-24863 and SPARK-24748
## What changes were proposed in this pull request?

Revert SPARK-24863 (#21819) and SPARK-24748 (#21721) as per discussion in #21721. We will revisit them when the data source v2 APIs are out.

## How was this patch tested?

Jenkins

Closes #22334 from zsxwing/revert-SPARK-24863-SPARK-24748.

Authored-by: Shixiong Zhu <zsxwing@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-09-05 13:39:34 +08:00
Shixiong Zhu aa70a0a1a4
[SPARK-25288][TESTS] Fix flaky Kafka transaction tests
## What changes were proposed in this pull request?

Here are the failures:

http://spark-tests.appspot.com/test-details?suite_name=org.apache.spark.sql.kafka010.KafkaRelationSuite&test_name=read+Kafka+transactional+messages%3A+read_committed
http://spark-tests.appspot.com/test-details?suite_name=org.apache.spark.sql.kafka010.KafkaMicroBatchV1SourceSuite&test_name=read+Kafka+transactional+messages%3A+read_committed
http://spark-tests.appspot.com/test-details?suite_name=org.apache.spark.sql.kafka010.KafkaMicroBatchV2SourceSuite&test_name=read+Kafka+transactional+messages%3A+read_committed

I found the Kafka consumer may not see the committed messages for a short time. This PR just adds a new method `waitUntilOffsetAppears` and uses it to make sure the consumer can see a specified offset before checking the result.

## How was this patch tested?

Jenkins

Closes #22293 from zsxwing/SPARK-25288.

Authored-by: Shixiong Zhu <zsxwing@gmail.com>
Signed-off-by: Shixiong Zhu <zsxwing@gmail.com>
2018-08-30 23:23:11 -07:00
Reza Safi 135ff16a35 [SPARK-25233][STREAMING] Give the user the option of specifying a minimum message per partition per batch when using kafka direct API with backpressure
After SPARK-18371, it is guaranteed that there would be at least one message per partition per batch using direct kafka API when new messages exist in the topics. This change will give the user the option of setting the minimum instead of just a hard coded 1 limit
The related unit test is updated and some internal tests verified that the topic partitions with new messages will be progressed by the specified minimum.

Author: Reza Safi <rezasafi@cloudera.com>

Closes #22223 from rezasafi/streaminglag.
2018-08-30 13:26:03 -05:00
Arun Mahadevan 68ec207a32 [SPARK-25260][SQL] Fix namespace handling in SchemaConverters.toAvroType
## What changes were proposed in this pull request?

`toAvroType` converts spark data type to avro schema. It always appends the record name to namespace so its impossible to have an Avro namespace independent of the record name.

When invoked with a spark data type like,

```java
val sparkSchema = StructType(Seq(
    StructField("name", StringType, nullable = false),
    StructField("address", StructType(Seq(
        StructField("city", StringType, nullable = false),
        StructField("state", StringType, nullable = false))),
    nullable = false)))

// map it to an avro schema with record name "employee" and top level namespace "foo.bar",
val avroSchema = SchemaConverters.toAvroType(sparkSchema,  false, "employee", "foo.bar")

// result is
// avroSchema.getName = employee
// avroSchema.getNamespace = foo.bar.employee
// avroSchema.getFullname = foo.bar.employee.employee
```
The patch proposes to fix this so that the result is

```
avroSchema.getName = employee
avroSchema.getNamespace = foo.bar
avroSchema.getFullname = foo.bar.employee
```
## How was this patch tested?

New and existing unit tests.

Please review http://spark.apache.org/contributing.html before opening a pull request.

Closes #22251 from arunmahadevan/avro-fix.

Authored-by: Arun Mahadevan <arunm@apache.org>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-08-29 09:25:49 +08:00
Shixiong Zhu 1149c4efbc
[SPARK-25005][SS] Support non-consecutive offsets for Kafka
## What changes were proposed in this pull request?

As the user uses Kafka transactions to write data, the offsets in Kafka will be non-consecutive. It will contains some transaction (commit or abort) markers. In addition, if the consumer's `isolation.level` is `read_committed`, `poll` will not return aborted messages either. Hence, we will see non-consecutive offsets in the date returned by `poll`. However, as `seekToEnd` may move the offset point to these missing offsets, there are 4 possible corner cases we need to support:

- The whole batch contains no data messages
- The first offset in a batch is not a committed data message
- The last offset in a batch is not a committed data message
- There is a gap in the middle of a batch

They are all covered by the new unit tests.

## How was this patch tested?

The new unit tests.

Closes #22042 from zsxwing/kafka-transaction-read.

Authored-by: Shixiong Zhu <zsxwing@gmail.com>
Signed-off-by: Shixiong Zhu <zsxwing@gmail.com>
2018-08-28 08:38:07 -07:00
Jose Torres 810d59ce44
[SPARK-24882][FOLLOWUP] Fix flaky synchronization in Kafka tests.
## What changes were proposed in this pull request?

Fix flaky synchronization in Kafka tests - we need to use the scan config that was persisted rather than reconstructing it to identify the stream's current configuration.

We caught most instances of this in the original PR, but this one slipped through.

## How was this patch tested?

n/a

Closes #22245 from jose-torres/fixflake.

Authored-by: Jose Torres <torres.joseph.f+github@gmail.com>
Signed-off-by: Shixiong Zhu <zsxwing@gmail.com>
2018-08-27 11:04:39 -07:00
Shixiong Zhu c17a8ff523
[SPARK-25214][SS][FOLLOWUP] Fix the issue that Kafka v2 source may return duplicated records when failOnDataLoss=false
## What changes were proposed in this pull request?

This is a follow up PR for #22207 to fix a potential flaky test. `processAllAvailable` doesn't work for continuous processing so we should not use it for a continuous query.

## How was this patch tested?

Jenkins.

Closes #22230 from zsxwing/SPARK-25214-2.

Authored-by: Shixiong Zhu <zsxwing@gmail.com>
Signed-off-by: Shixiong Zhu <zsxwing@gmail.com>
2018-08-25 09:17:40 -07:00
Shixiong Zhu 8bb9414aaf
[SPARK-25214][SS] Fix the issue that Kafka v2 source may return duplicated records when failOnDataLoss=false
## What changes were proposed in this pull request?

When there are missing offsets, Kafka v2 source may return duplicated records when `failOnDataLoss=false` because it doesn't skip missing offsets.

This PR fixes the issue and also adds regression tests for all Kafka readers.

## How was this patch tested?

New tests.

Closes #22207 from zsxwing/SPARK-25214.

Authored-by: Shixiong Zhu <zsxwing@gmail.com>
Signed-off-by: Shixiong Zhu <zsxwing@gmail.com>
2018-08-24 12:00:34 -07:00
Gengliang Wang e3b7bb4132 [SPARK-24811][FOLLOWUP][SQL] Revise package of AvroDataToCatalyst and CatalystDataToAvro
## What changes were proposed in this pull request?

In https://github.com/apache/spark/pull/21838, the class `AvroDataToCatalyst` and `CatalystDataToAvro` were put in package `org.apache.spark.sql`.
They should be moved to package  `org.apache.spark.sql.avro`.
Also optimize imports in Avro module.

## How was this patch tested?

Unit test

Closes #22196 from gengliangwang/avro_revise_package_name.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-08-23 15:08:46 +08:00
Takeshi Yamamuro 2a0a8f753b [SPARK-23034][SQL] Show RDD/relation names in RDD/Hive table scan nodes
## What changes were proposed in this pull request?
This pr proposed to show RDD/relation names in RDD/Hive table scan nodes.
This change made these names show up in the webUI and explain results.
For example;
```
scala> sql("CREATE TABLE t(c1 int) USING hive")
scala> sql("INSERT INTO t VALUES(1)")
scala> spark.table("t").explain()
== Physical Plan ==
Scan hive default.t [c1#8], HiveTableRelation `default`.`t`, org.apache.hadoop.hive.serde2.lazy.LazySimpleSerDe, [c1#8]
         ^^^^^^^^^^^
```
<img width="212" alt="spark-pr-hive" src="https://user-images.githubusercontent.com/692303/44501013-51264c80-a6c6-11e8-94f8-0704aee83bb6.png">

Closes #20226

## How was this patch tested?
Added tests in `DataFrameSuite`, `DatasetSuite`, and `HiveExplainSuite`

Closes #22153 from maropu/pr20226.

Lead-authored-by: Takeshi Yamamuro <yamamuro@apache.org>
Co-authored-by: Tejas Patil <tejasp@fb.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-08-23 14:26:10 +08:00
Tathagata Das 3106324986 [SPARK-25184][SS] Fixed race condition in StreamExecution that caused flaky test in FlatMapGroupsWithState
## What changes were proposed in this pull request?

The race condition that caused test failure is between 2 threads.
- The MicrobatchExecution thread that processes inputs to produce answers and then generates progress events.
- The test thread that generates some input data, checked the answer and then verified the query generated progress event.

The synchronization structure between these threads is as follows
1. MicrobatchExecution thread, in every batch, does the following in order.
   a. Processes batch input to generate answer.
   b. Signals `awaitProgressLockCondition` to wake up threads waiting for progress using `awaitOffset`
   c. Generates progress event

2. Test execution thread
   a. Calls `awaitOffset` to wait for progress, which waits on `awaitProgressLockCondition`.
   b. As soon as `awaitProgressLockCondition` is signaled, it would move on the in the test to check answer.
  c. Finally, it would verify the last generated progress event.

What can happen is the following sequence of events: 2a -> 1a -> 1b -> 2b -> 2c -> 1c.
In other words, the progress event may be generated after the test tries to verify it.

The solution has two steps.
1. Signal the waiting thread after the progress event has been generated, that is, after `finishTrigger()`.
2. Increase the timeout of `awaitProgressLockCondition.await(100 ms)` to a large value.

This latter is to ensure that test thread for keeps waiting on `awaitProgressLockCondition`until the MicroBatchExecution thread explicitly signals it. With the existing small timeout of 100ms the following sequence can occur.
 - MicroBatchExecution thread updates committed offsets
 - Test thread waiting on `awaitProgressLockCondition` accidentally times out after 100 ms, finds that the committed offsets have been updated, therefore returns from `awaitOffset` and moves on to the progress event tests.
 - MicroBatchExecution thread then generates progress event and signals. But the test thread has already attempted to verify the event and failed.

By increasing the timeout to large (e.g., `streamingTimeoutMs = 60 seconds`, similar to `awaitInitialization`), this above type of race condition is also avoided.

## How was this patch tested?
Ran locally many times.

Closes #22182 from tdas/SPARK-25184.

Authored-by: Tathagata Das <tathagata.das1565@gmail.com>
Signed-off-by: Tathagata Das <tathagata.das1565@gmail.com>
2018-08-22 12:22:53 -07:00
Wenchen Fan e754887182 [SPARK-24882][SQL] improve data source v2 API
## What changes were proposed in this pull request?

Improve the data source v2 API according to the [design doc](https://docs.google.com/document/d/1DDXCTCrup4bKWByTalkXWgavcPdvur8a4eEu8x1BzPM/edit?usp=sharing)

summary of the changes
1. rename `ReadSupport` -> `DataSourceReader` -> `InputPartition` -> `InputPartitionReader` to `BatchReadSupportProvider` -> `BatchReadSupport` -> `InputPartition`/`PartitionReaderFactory` -> `PartitionReader`. Similar renaming also happens at streaming and write APIs.
2. create `ScanConfig` to store query specific information like operator pushdown result, streaming offsets, etc. This makes batch and streaming `ReadSupport`(previouslly named `DataSourceReader`) immutable. All other methods take `ScanConfig` as input, which implies applying operator pushdown and getting streaming offsets happen before all other things(get input partitions, report statistics, etc.).
3. separate `InputPartition` to `InputPartition` and `PartitionReaderFactory`. This is a natural separation, data splitting and reading are orthogonal and we should not mix them in one interfaces. This also makes the naming consistent between read and write API: `PartitionReaderFactory` vs `DataWriterFactory`.
4. separate the batch and streaming interfaces. Sometimes it's painful to force the streaming interface to extend batch interface, as we may need to override some batch methods to return false, or even leak the streaming concept to batch API(e.g. `DataWriterFactory#createWriter(partitionId, taskId, epochId)`)

Some follow-ups we should do after this PR (tracked by https://issues.apache.org/jira/browse/SPARK-25186 ):
1. Revisit the life cycle of `ReadSupport` instances. Currently I keep it same as the previous `DataSourceReader`, i.e. the life cycle is bound to the batch/stream query. This fits streaming very well but may not be perfect for batch source. We can also consider to let `ReadSupport.newScanConfigBuilder` take `DataSourceOptions` as parameter, if we decide to change the life cycle.
2. Add `WriteConfig`. This is similar to `ScanConfig` and makes the write API more flexible. But it's only needed when we add the `replaceWhere` support, and it needs to change the streaming execution engine for this new concept, which I think is better to be done in another PR.
3. Refine the document. This PR adds/changes a lot of document and it's very likely that some people may have better ideas.
4. Figure out the life cycle of `CustomMetrics`. It looks to me that it should be bound to a `ScanConfig`, but we need to change `ProgressReporter` to get the `ScanConfig`. Better to be done in another PR.
5. Better operator pushdown API. This PR keeps the pushdown API as it was, i.e. using the `SupportsPushdownXYZ` traits. We can design a better API using build pattern, but this is a complicated design and deserves an individual JIRA ticket and design doc.
6. Improve the continuous streaming engine to only create a new `ScanConfig` when re-configuring.
7. Remove `SupportsPushdownCatalystFilter`. This is actually not a must-have for file source, we can change the hive partition pruning to use the public `Filter`.

## How was this patch tested?

existing tests.

Closes #22009 from cloud-fan/redesign.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Xiao Li <gatorsmile@gmail.com>
2018-08-22 00:10:55 -07:00
Gengliang Wang ac0174e55a [SPARK-25129][SQL] Make the mapping of com.databricks.spark.avro to built-in module configurable
## What changes were proposed in this pull request?

In https://issues.apache.org/jira/browse/SPARK-24924, the data source provider com.databricks.spark.avro is mapped to the new package org.apache.spark.sql.avro .

As per the discussion in the [Jira](https://issues.apache.org/jira/browse/SPARK-24924) and PR #22119, we should make the mapping configurable.

This PR also improve the error message when data source of Avro/Kafka is not found.

## How was this patch tested?

Unit test

Closes #22133 from gengliangwang/configurable_avro_mapping.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Xiao Li <gatorsmile@gmail.com>
2018-08-21 15:26:24 -07:00
Gengliang Wang 60af2501e1 [SPARK-25160][SQL] Avro: remove sql configuration spark.sql.avro.outputTimestampType
## What changes were proposed in this pull request?

In the PR for supporting logical timestamp types https://github.com/apache/spark/pull/21935, a SQL configuration spark.sql.avro.outputTimestampType is added, so that user can specify the output timestamp precision they want.

With PR https://github.com/apache/spark/pull/21847,  the output file can be written with user specified types.

So there is no need to have such trivial configuration. Otherwise to make it consistent we need to add configuration for all the Catalyst types that can be converted into different Avro types.

This PR also add a test case for user specified output schema with different timestamp types.

## How was this patch tested?

Unit test

Closes #22151 from gengliangwang/removeOutputTimestampType.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-08-20 20:42:27 +08:00
Arun Mahadevan 14d7c1c3e9 [SPARK-24863][SS] Report Kafka offset lag as a custom metrics
## What changes were proposed in this pull request?

This builds on top of SPARK-24748 to report 'offset lag' as a custom metrics for Kafka structured streaming source.

This lag is the difference between the latest offsets in Kafka the time the metrics is reported (just after a micro-batch completes) and the latest offset Spark has processed. It can be 0 (or close to 0) if spark keeps up with the rate at which messages are ingested into Kafka topics in steady state. This measures how far behind the spark source has fallen behind (per partition) and can aid in tuning the application.

## How was this patch tested?

Existing and new unit tests

Please review http://spark.apache.org/contributing.html before opening a pull request.

Closes #21819 from arunmahadevan/SPARK-24863.

Authored-by: Arun Mahadevan <arunm@apache.org>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-08-18 17:31:52 +08:00
Shixiong Zhu da2dc69291
[SPARK-25116][TESTS] Fix the Kafka cluster leak and clean up cached producers
## What changes were proposed in this pull request?

KafkaContinuousSinkSuite leaks a Kafka cluster because both KafkaSourceTest and KafkaContinuousSinkSuite create a Kafka cluster but `afterAll` only shuts down one cluster. This leaks a Kafka cluster and causes that some Kafka thread crash and kill JVM when SBT is trying to clean up tests.

This PR fixes the leak and also adds a shut down hook to detect Kafka cluster leak.

In additions, it also fixes `AdminClient` leak and cleans up cached producers (When a record is writtn using a producer, the producer will keep refreshing the topic and I don't find an API to clear it except closing the producer) to eliminate the following annoying logs:
```
8/13 15:34:42.568 kafka-admin-client-thread | adminclient-4 WARN NetworkClient: [AdminClient clientId=adminclient-4] Connection to node 0 could not be established. Broker may not be available.
18/08/13 15:34:42.570 kafka-admin-client-thread | adminclient-6 WARN NetworkClient: [AdminClient clientId=adminclient-6] Connection to node 0 could not be established. Broker may not be available.
18/08/13 15:34:42.606 kafka-admin-client-thread | adminclient-8 WARN NetworkClient: [AdminClient clientId=adminclient-8] Connection to node -1 could not be established. Broker may not be available.
18/08/13 15:34:42.729 kafka-producer-network-thread | producer-797 WARN NetworkClient: [Producer clientId=producer-797] Connection to node -1 could not be established. Broker may not be available.
18/08/13 15:34:42.906 kafka-producer-network-thread | producer-1598 WARN NetworkClient: [Producer clientId=producer-1598] Connection to node 0 could not be established. Broker may not be available.
```

I also reverted b5eb54244e introduced by #22097 since it doesn't help.

## How was this patch tested?

Jenkins

Closes #22106 from zsxwing/SPARK-25116.

Authored-by: Shixiong Zhu <zsxwing@gmail.com>
Signed-off-by: Shixiong Zhu <zsxwing@gmail.com>
2018-08-17 14:21:08 -07:00
Sean Owen b3e6fe7c46 [SPARK-23654][BUILD] remove jets3t as a dependency of spark
## What changes were proposed in this pull request?

Remove jets3t dependency, and bouncy castle which it brings in; update licenses and deps
Note this just takes over https://github.com/apache/spark/pull/21146

## How was this patch tested?

Existing tests.

Closes #22081 from srowen/SPARK-23654.

Authored-by: Sean Owen <srowen@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-08-16 12:34:23 -07:00
Shixiong Zhu 80784a1de8
[SPARK-18057][FOLLOW-UP] Use 127.0.0.1 to avoid zookeeper picking up an ipv6 address
## What changes were proposed in this pull request?

I'm still seeing the Kafka tests failed randomly due to `kafka.zookeeper.ZooKeeperClientTimeoutException: Timed out waiting for connection while in state: CONNECTING`. I checked the test output and saw zookeeper picked up an ipv6 address. Most details can be found in https://issues.apache.org/jira/browse/KAFKA-7193

This PR just uses `127.0.0.1` rather than `localhost` to make sure zookeeper will never use an ipv6 address.

## How was this patch tested?

Jenkins

Closes #22097 from zsxwing/fix-zookeeper-connect.

Authored-by: Shixiong Zhu <zsxwing@gmail.com>
Signed-off-by: Shixiong Zhu <zsxwing@gmail.com>
2018-08-14 09:57:01 -07:00
Gengliang Wang ab197308a7
[SPARK-25104][SQL] Avro: Validate user specified output schema
## What changes were proposed in this pull request?

With code changes in https://github.com/apache/spark/pull/21847 , Spark can write out to Avro file as per user provided output schema.

To make it more robust and user friendly, we should validate the Avro schema before tasks launched.

Also we should support output logical decimal type as BYTES (By default we output as FIXED)

## How was this patch tested?

Unit test

Closes #22094 from gengliangwang/AvroSerializerMatch.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: DB Tsai <d_tsai@apple.com>
2018-08-14 04:43:14 +00:00
Gengliang Wang 26775e3c8e [SPARK-25099][SQL][TEST] Generate Avro Binary files in test suite
## What changes were proposed in this pull request?

In PR https://github.com/apache/spark/pull/21984 and https://github.com/apache/spark/pull/21935 , the related test cases are using binary files created by Python scripts.

Generate the binary files in test suite to make it more transparent.  Also we can

Also move the related test cases to a new file `AvroLogicalTypeSuite.scala`.

## How was this patch tested?

Unit test.

Closes #22091 from gengliangwang/logicalType_suite.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-08-13 20:50:28 +08:00
Gengliang Wang be2238fb50 [SPARK-24774][SQL] Avro: Support logical decimal type
## What changes were proposed in this pull request?

Support Avro logical date type:
https://avro.apache.org/docs/1.8.2/spec.html#Decimal

## How was this patch tested?
Unit test

Closes #22037 from gengliangwang/avro_decimal.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-08-13 08:29:07 +08:00
Brian Lindblom 0cea9e3cd0
[SPARK-24855][SQL][EXTERNAL] Built-in AVRO support should support specified schema on write
## What changes were proposed in this pull request?

Allows `avroSchema` option to be specified on write, allowing a user to specify a schema in cases where this is required.  A trivial use case is reading in an avro dataset, making some small adjustment to a column or columns and writing out using the same schema.  Implicit schema creation from SQL Struct results in a schema that while for the most part, is functionally similar, is not necessarily compatible.

Allows `fixed` Field type to be utilized for records of specified `avroSchema`

## How was this patch tested?

Unit tests in AvroSuite are extended to test this with enum and fixed types.

Please review http://spark.apache.org/contributing.html before opening a pull request.

Closes #21847 from lindblombr/specify_schema_on_write.

Lead-authored-by: Brian Lindblom <blindblom@apple.com>
Co-authored-by: DB Tsai <d_tsai@apple.com>
Signed-off-by: DB Tsai <d_tsai@apple.com>
2018-08-10 03:35:29 +00:00
Kazuaki Ishizaki 56e9e97073 [MINOR][DOC] Fix typo
## What changes were proposed in this pull request?

This PR fixes typo regarding `auxiliary verb + verb[s]`. This is a follow-on of #21956.

## How was this patch tested?

N/A

Closes #22040 from kiszk/spellcheck1.

Authored-by: Kazuaki Ishizaki <ishizaki@jp.ibm.com>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-08-09 20:10:17 +08:00
Gengliang Wang 819c4de45a [SPARK-24772][SQL] Avro: support logical date type
## What changes were proposed in this pull request?

Support Avro logical date type:
https://avro.apache.org/docs/1.8.2/spec.html#Date

## How was this patch tested?

Unit test

Closes #21984 from gengliangwang/avro_date.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-08-07 17:24:25 +08:00
Wenchen Fan ac527b5205 [SPARK-24991][SQL] use InternalRow in DataSourceWriter
## What changes were proposed in this pull request?

A follow up of #21118

Since we use `InternalRow` in the read API of data source v2, we should do the same thing for the write API.

## How was this patch tested?

existing tests.

Author: Wenchen Fan <wenchen@databricks.com>

Closes #21948 from cloud-fan/row-write.
2018-08-06 15:52:01 +08:00
Yuval Itzchakov b7fdf8eb20 [SPARK-24987][SS] - Fix Kafka consumer leak when no new offsets for TopicPartition
## What changes were proposed in this pull request?

This small fix adds a `consumer.release()` call to `KafkaSourceRDD` in the case where we've retrieved offsets from Kafka, but the `fromOffset` is equal to the `lastOffset`, meaning there is no new data to read for a particular topic partition. Up until now, we'd just return an empty iterator without closing the consumer which would cause a FD leak.

If accepted, this pull request should be merged into master as well.

## How was this patch tested?

Haven't ran any specific tests, would love help on how to test methods running inside `RDD.compute`.

Author: Yuval Itzchakov <yuval.itzchakov@clicktale.com>

Closes #21997 from YuvalItzchakov/master.
2018-08-04 14:44:10 -05:00
Sean Owen 4c27663cb2
[SPARK-18057][FOLLOW-UP][SS] Update Kafka client version from 0.10.0.1 to 2.0.0
## What changes were proposed in this pull request?

Increase ZK timeout and harmonize configs across Kafka tests to resol…ve potentially flaky test failure

## How was this patch tested?

Existing tests

Author: Sean Owen <srowen@gmail.com>

Closes #21995 from srowen/SPARK-18057.3.
2018-08-03 16:22:54 -07:00
Sean Owen c32dbd6bd5 [SPARK-18057][FOLLOW-UP][SS] Update Kafka client version from 0.10.0.1 to 2.0.0
## What changes were proposed in this pull request?

Update to kafka 2.0.0 in streaming-kafka module, and remove override for Scala 2.12. It won't compile for 2.12 otherwise.

## How was this patch tested?

Existing tests.

Author: Sean Owen <srowen@gmail.com>

Closes #21955 from srowen/SPARK-18057.2.
2018-08-03 08:17:18 -05:00
DB Tsai 273b28404c
[SPARK-24993][SQL] Make Avro Fast Again
## What changes were proposed in this pull request?

When lindblombr at apple developed [SPARK-24855](https://github.com/apache/spark/pull/21847) to support specified schema on write, we found a performance regression in Avro writer for our dataset.

With this PR, the performance is improved, but not as good as Spark 2.3 + the old avro writer. There must be something we miss which we need to investigate further.

Spark 2.4
```
spark git:(master) ./build/mvn -DskipTests clean package
spark git:(master) bin/spark-shell --jars external/avro/target/spark-avro_2.11-2.4.0-SNAPSHOT.jar
```

Spark 2.3 + databricks avro
```
spark git:(branch-2.3) ./build/mvn -DskipTests clean package
spark git:(branch-2.3) bin/spark-shell --packages com.databricks:spark-avro_2.11:4.0.0
```

Current master:
```
+-------+--------------------+
|summary|          writeTimes|
+-------+--------------------+
|  count|                 100|
|   mean|             2.95621|
| stddev|0.030895815479469294|
|    min|               2.915|
|    max|               3.049|
+-------+--------------------+

+-------+--------------------+
|summary|           readTimes|
+-------+--------------------+
|  count|                 100|
|   mean| 0.31072999999999995|
| stddev|0.054139709842390006|
|    min|               0.259|
|    max|               0.692|
+-------+--------------------+
```

Current master with this PR:
```
+-------+--------------------+
|summary|          writeTimes|
+-------+--------------------+
|  count|                 100|
|   mean|  2.5804300000000002|
| stddev|0.011175600225672079|
|    min|               2.558|
|    max|                2.62|
+-------+--------------------+

+-------+--------------------+
|summary|           readTimes|
+-------+--------------------+
|  count|                 100|
|   mean| 0.29922000000000004|
| stddev|0.058261961532514166|
|    min|               0.251|
|    max|               0.732|
+-------+--------------------+
```

Spark 2.3 + databricks avro:
```
+-------+--------------------+
|summary|          writeTimes|
+-------+--------------------+
|  count|                 100|
|   mean|  1.7730500000000005|
| stddev|0.025199156230863575|
|    min|               1.729|
|    max|               1.833|
+-------+--------------------+

+-------+-------------------+
|summary|          readTimes|
+-------+-------------------+
|  count|                100|
|   mean|            0.29715|
| stddev|0.05685643358850465|
|    min|              0.258|
|    max|              0.718|
+-------+-------------------+
```

The following is the test code to reproduce the result.
```scala
    spark.sqlContext.setConf("spark.sql.avro.compression.codec", "uncompressed")
    val sparkSession = spark
    import sparkSession.implicits._
    val df = spark.sparkContext.range(1, 3000).repartition(1).map { uid =>
      val features = Array.fill(16000)(scala.math.random)
      (uid, scala.math.random, java.util.UUID.randomUUID().toString, java.util.UUID.randomUUID().toString, features)
    }.toDF("uid", "random", "uuid1", "uuid2", "features").cache()
    val size = df.count()

    // Write into ramdisk to rule out the disk IO impact
    val tempSaveDir = s"/Volumes/ramdisk/${java.util.UUID.randomUUID()}/"
    val n = 150
    val writeTimes = new Array[Double](n)
    var i = 0
    while (i < n) {
      val t1 = System.currentTimeMillis()
      df.write
        .format("com.databricks.spark.avro")
        .mode("overwrite")
        .save(tempSaveDir)
      val t2 = System.currentTimeMillis()
      writeTimes(i) = (t2 - t1) / 1000.0
      i += 1
    }

    df.unpersist()

    // The first 50 runs are for warm-up
    val readTimes = new Array[Double](n)
    i = 0
    while (i < n) {
      val t1 = System.currentTimeMillis()
      val readDF = spark.read.format("com.databricks.spark.avro").load(tempSaveDir)
      assert(readDF.count() == size)
      val t2 = System.currentTimeMillis()
      readTimes(i) = (t2 - t1) / 1000.0
      i += 1
    }

    spark.sparkContext.parallelize(writeTimes.slice(50, 150)).toDF("writeTimes").describe("writeTimes").show()
    spark.sparkContext.parallelize(readTimes.slice(50, 150)).toDF("readTimes").describe("readTimes").show()
```

## How was this patch tested?

Existing tests.

Author: DB Tsai <d_tsai@apple.com>
Author: Brian Lindblom <blindblom@apple.com>

Closes #21952 from dbtsai/avro-performance-fix.
2018-08-03 07:43:54 +00:00
Gengliang Wang f45d60a5a1 [SPARK-25002][SQL] Avro: revise the output record namespace
## What changes were proposed in this pull request?

Currently the output namespace is starting with ".", e.g. `.topLevelRecord`

Although it is valid according to Avro spec, we should remove the starting dot in case of failures when the output Avro file is read by other lib:

https://github.com/linkedin/goavro/pull/96

## How was this patch tested?

Unit test

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21974 from gengliangwang/avro_namespace.
2018-08-03 13:28:44 +08:00
Gengliang Wang 7cf16a7fa4 [SPARK-24773] Avro: support logical timestamp type with different precisions
## What changes were proposed in this pull request?

Support reading/writing Avro logical timestamp type with different precisions
https://avro.apache.org/docs/1.8.2/spec.html#Timestamp+%28millisecond+precision%29

To specify the output timestamp type, use Dataframe option `outputTimestampType`  or SQL config `spark.sql.avro.outputTimestampType`.  The supported values are
* `TIMESTAMP_MICROS`
* `TIMESTAMP_MILLIS`

The default output type is `TIMESTAMP_MICROS`
## How was this patch tested?

Unit test

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21935 from gengliangwang/avro_timestamp.
2018-08-03 08:32:08 +08:00
Stavros Kontopoulos a65736996b [SPARK-14540][CORE] Fix remaining major issues for Scala 2.12 Support
## What changes were proposed in this pull request?
This PR addresses issues 2,3 in this [document](https://docs.google.com/document/d/1fbkjEL878witxVQpOCbjlvOvadHtVjYXeB-2mgzDTvk).

* We modified the closure cleaner to identify closures that are implemented via the LambdaMetaFactory mechanism (serializedLambdas) (issue2).

* We also fix the issue due to scala/bug#11016. There are two options for solving the Unit issue, either add () at the end of the closure or use the trick described in the doc. Otherwise overloading resolution does not work (we are not going to eliminate either of the methods) here. Compiler tries to adapt to Unit and makes these two methods candidates for overloading, when there is polymorphic overloading there is no ambiguity (that is the workaround implemented). This does not look that good but it serves its purpose as we need to support two different uses for method: `addTaskCompletionListener`. One that passes a TaskCompletionListener and one that passes a closure that is wrapped with a TaskCompletionListener later on (issue3).

Note: regarding issue 1 in the doc the plan is:

> Do Nothing. Don’t try to fix this as this is only a problem for Java users who would want to use 2.11 binaries. In that case they can cast to MapFunction to be able to utilize lambdas. In Spark 3.0.0 the API should be simplified so that this issue is removed.

## How was this patch tested?
This was manually tested:
```./dev/change-scala-version.sh 2.12
./build/mvn -DskipTests -Pscala-2.12 clean package
./build/mvn -Pscala-2.12 clean package -DwildcardSuites=org.apache.spark.serializer.ProactiveClosureSerializationSuite -Dtest=None
./build/mvn -Pscala-2.12 clean package -DwildcardSuites=org.apache.spark.util.ClosureCleanerSuite -Dtest=None
./build/mvn -Pscala-2.12 clean package -DwildcardSuites=org.apache.spark.streaming.DStreamClosureSuite -Dtest=None```

Author: Stavros Kontopoulos <stavros.kontopoulos@lightbend.com>

Closes #21930 from skonto/scala2.12-sup.
2018-08-02 09:17:09 -05:00
tedyu e82784d13f [SPARK-18057][SS] Update Kafka client version from 0.10.0.1 to 2.0.0
## What changes were proposed in this pull request?

This PR upgrades to the Kafka 2.0.0 release where KIP-266 is integrated.

## How was this patch tested?

This PR uses existing Kafka related unit tests

(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: tedyu <yuzhihong@gmail.com>

Closes #21488 from tedyu/master.
2018-07-31 13:14:14 -07:00
Maxim Gekk d20c10fdf3 [SPARK-24952][SQL] Support LZMA2 compression by Avro datasource
## What changes were proposed in this pull request?

In the PR, I propose to support `LZMA2` (`XZ`) and `BZIP2` compressions by `AVRO` datasource  in write since the codecs may have better characteristics like compression ratio and speed comparing to already supported `snappy` and `deflate` codecs.

## How was this patch tested?

It was tested manually and by an existing test which was extended to check the `xz` and `bzip2` compressions.

Author: Maxim Gekk <maxim.gekk@databricks.com>

Closes #21902 from MaxGekk/avro-xz-bzip2.
2018-07-31 09:12:57 +08:00
Takeshi Yamamuro 47d84e4d0e [SPARK-22814][SQL] Support Date/Timestamp in a JDBC partition column
## What changes were proposed in this pull request?
This pr supported Date/Timestamp in a JDBC partition column (a numeric column is only supported in the master). This pr also modified code to verify a partition column type;
```
val jdbcTable = spark.read
 .option("partitionColumn", "text")
 .option("lowerBound", "aaa")
 .option("upperBound", "zzz")
 .option("numPartitions", 2)
 .jdbc("jdbc:postgresql:postgres", "t", options)

// with this pr
org.apache.spark.sql.AnalysisException: Partition column type should be numeric, date, or timestamp, but string found.;
  at org.apache.spark.sql.execution.datasources.jdbc.JDBCRelation$.verifyAndGetNormalizedPartitionColumn(JDBCRelation.scala:165)
  at org.apache.spark.sql.execution.datasources.jdbc.JDBCRelation$.columnPartition(JDBCRelation.scala:85)
  at org.apache.spark.sql.execution.datasources.jdbc.JdbcRelationProvider.createRelation(JdbcRelationProvider.scala:36)
  at org.apache.spark.sql.execution.datasources.DataSource.resolveRelation(DataSource.scala:317)

// without this pr
java.lang.NumberFormatException: For input string: "aaa"
  at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
  at java.lang.Long.parseLong(Long.java:589)
  at java.lang.Long.parseLong(Long.java:631)
  at scala.collection.immutable.StringLike$class.toLong(StringLike.scala:277)
```

Closes #19999

## How was this patch tested?
Added tests in `JDBCSuite`.

Author: Takeshi Yamamuro <yamamuro@apache.org>

Closes #21834 from maropu/SPARK-22814.
2018-07-30 07:42:00 -07:00
hyukjinkwon fca0b8528e [SPARK-24967][SQL] Avro: Use internal.Logging instead for logging
## What changes were proposed in this pull request?

Looks Avro uses direct `getLogger` to create a SLF4J logger. Should better use `internal.Logging` instead.

## How was this patch tested?

Exiting tests.

Author: hyukjinkwon <gurwls223@apache.org>

Closes #21914 from HyukjinKwon/avro-log.
2018-07-30 21:13:08 +08:00
Xiao Li c6a3db2fb6 [SPARK-24924][SQL][FOLLOW-UP] Add mapping for built-in Avro data source
## What changes were proposed in this pull request?
Add one more test case for `com.databricks.spark.avro`.

## How was this patch tested?
N/A

Author: Xiao Li <gatorsmile@gmail.com>

Closes #21906 from gatorsmile/avro.
2018-07-28 13:43:32 +08:00
Maxim Gekk 0a0f68bae6 [SPARK-24881][SQL] New Avro option - compression
## What changes were proposed in this pull request?

In the PR, I added new option for Avro datasource - `compression`. The option allows to specify compression codec for saved Avro files. This option is similar to `compression` option in another datasources like `JSON` and `CSV`.

Also I added the SQL configs `spark.sql.avro.compression.codec` and `spark.sql.avro.deflate.level`. I put the configs into `SQLConf`. If the `compression` option is not specified by an user, the first SQL config is taken into account.

## How was this patch tested?

I added new test which read meta info from written avro files and checks `avro.codec` property.

Author: Maxim Gekk <maxim.gekk@databricks.com>

Closes #21837 from MaxGekk/avro-compression.
2018-07-28 00:11:32 +08:00
Gengliang Wang fa09d91925 [SPARK-24919][BUILD] New linter rule for sparkContext.hadoopConfiguration
## What changes were proposed in this pull request?

In most cases, we should use `spark.sessionState.newHadoopConf()` instead of `sparkContext.hadoopConfiguration`, so that the hadoop configurations specified in Spark session
configuration will come into effect.

Add a rule matching `spark.sparkContext.hadoopConfiguration` or `spark.sqlContext.sparkContext.hadoopConfiguration` to prevent the usage.
## How was this patch tested?

Unit test

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21873 from gengliangwang/linterRule.
2018-07-26 16:50:59 -07:00
Dongjoon Hyun 58353d7f4b [SPARK-24924][SQL] Add mapping for built-in Avro data source
## What changes were proposed in this pull request?

This PR aims to the followings.
1. Like `com.databricks.spark.csv` mapping, we had better map `com.databricks.spark.avro` to built-in Avro data source.
2. Remove incorrect error message, `Please find an Avro package at ...`.

## How was this patch tested?

Pass the newly added tests.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #21878 from dongjoon-hyun/SPARK-24924.
2018-07-26 16:11:03 +08:00
Gengliang Wang c44eb561ec [SPARK-24768][FOLLOWUP][SQL] Avro migration followup: change artifactId to spark-avro
## What changes were proposed in this pull request?
After rethinking on the artifactId, I think it should be `spark-avro` instead of `spark-sql-avro`, which is simpler, and consistent with the previous artifactId. I think we need to change it before Spark 2.4 release.

Also a tiny change: use `spark.sessionState.newHadoopConf()` to get the hadoop configuration, thus the related hadoop configurations in SQLConf will come into effect.

## How was this patch tested?

Unit test

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21866 from gengliangwang/avro_followup.
2018-07-25 08:42:45 -07:00
Ryan Blue 9d27541a85 [SPARK-23325] Use InternalRow when reading with DataSourceV2.
## What changes were proposed in this pull request?

This updates the DataSourceV2 API to use InternalRow instead of Row for the default case with no scan mix-ins.

Support for readers that produce Row is added through SupportsDeprecatedScanRow, which matches the previous API. Readers that used Row now implement this class and should be migrated to InternalRow.

Readers that previously implemented SupportsScanUnsafeRow have been migrated to use no SupportsScan mix-ins and produce InternalRow.

## How was this patch tested?

This uses existing tests.

Author: Ryan Blue <blue@apache.org>

Closes #21118 from rdblue/SPARK-23325-datasource-v2-internal-row.
2018-07-24 10:46:36 -07:00
Gengliang Wang 08e315f633 [SPARK-24887][SQL] Avro: use SerializableConfiguration in Spark utils to deduplicate code
## What changes were proposed in this pull request?

To implement the method `buildReader` in `FileFormat`, it is required to serialize the hadoop configuration for executors.

Previous spark-avro uses its own class `SerializableConfiguration` for the serialization. As now it is part of Spark, we can use SerializableConfiguration in Spark util to deduplicate the code.

## How was this patch tested?

Unit test

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21846 from gengliangwang/removeSerializableConfiguration.
2018-07-23 08:31:48 -07:00
Gengliang Wang f59de52a2a [SPARK-24883][SQL] Avro: remove implicit class AvroDataFrameWriter/AvroDataFrameReader
## What changes were proposed in this pull request?

As per Reynold's comment: https://github.com/apache/spark/pull/21742#discussion_r203496489

It makes sense to remove the implicit class AvroDataFrameWriter/AvroDataFrameReader, since the Avro package is external module.

## How was this patch tested?

Unit test

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21841 from gengliangwang/removeImplicit.
2018-07-23 15:27:33 +08:00
Gengliang Wang 8817c68f50 [SPARK-24811][SQL] Avro: add new function from_avro and to_avro
## What changes were proposed in this pull request?

1. Add a new function from_avro for parsing a binary column of avro format and converting it into its corresponding catalyst value.

2. Add a new function to_avro for converting a column into binary of avro format with the specified schema.

I created #21774 for this, but it failed the build https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Compile/job/spark-master-compile-maven-hadoop-2.6/7902/

Additional changes In this PR:
1. Add `scalacheck` dependency in pom.xml to resolve the failure.
2. Update the `log4j.properties` to make it consistent with other modules.

## How was this patch tested?

Unit test
Compile with different commands:
```
./build/mvn --force -DzincPort=3643 -DskipTests -Phadoop-2.6 -Phive-thriftserver -Pkinesis-asl -Pspark-ganglia-lgpl -Pmesos -Pyarn  compile test-compile
./build/mvn --force -DzincPort=3643 -DskipTests -Phadoop-2.7 -Phive-thriftserver -Pkinesis-asl -Pspark-ganglia-lgpl -Pmesos -Pyarn  compile test-compile
./build/mvn --force -DzincPort=3643 -DskipTests -Phadoop-3.1 -Phive-thriftserver -Pkinesis-asl -Pspark-ganglia-lgpl -Pmesos -Pyarn  compile test-compile
```

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21838 from gengliangwang/from_and_to_avro.
2018-07-22 17:36:57 -07:00
Maxim Gekk 106880edcd [SPARK-24836][SQL] New option for Avro datasource - ignoreExtension
## What changes were proposed in this pull request?

I propose to add new option for AVRO datasource which should control ignoring of files without `.avro` extension in read. The option has name `ignoreExtension` with default value `true`. If both options `ignoreExtension` and `avro.mapred.ignore.inputs.without.extension` are set, `ignoreExtension` overrides the former one. Here is an example of usage:

```
spark
  .read
  .option("ignoreExtension", false)
  .avro("path to avro files")
```

## How was this patch tested?

I added a test which checks the option directly and a test for checking that new option overrides hadoop's config.

Author: Maxim Gekk <maxim.gekk@databricks.com>

Closes #21798 from MaxGekk/avro-ignore-extension.
2018-07-20 20:04:40 -07:00
Gengliang Wang 00b864aa70 [SPARK-24876][SQL] Avro: simplify schema serialization
## What changes were proposed in this pull request?

Previously in the refactoring of Avro Serializer and Deserializer, a new class SerializableSchema is created for serializing the Avro schema:
https://github.com/apache/spark/pull/21762/files#diff-01fea32e6ec6bcf6f34d06282e08705aR37

On second thought, we can use `toString` method for serialization. After that, parse the JSON format schema on executor. This makes the code much simpler.

## How was this patch tested?

Unit test

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21829 from gengliangwang/removeSerializableSchema.
2018-07-20 14:57:59 -07:00
Xiao Li 9ad77b3037 Revert "[SPARK-24811][SQL] Avro: add new function from_avro and to_avro"
This reverts commit 244bcff194.
2018-07-20 12:55:38 -07:00
Gengliang Wang 244bcff194 [SPARK-24811][SQL] Avro: add new function from_avro and to_avro
## What changes were proposed in this pull request?

Add a new function from_avro for parsing a binary column of avro format and converting it into its corresponding catalyst value.

Add a new function to_avro for converting a column into binary of avro format with the specified schema.

This PR is in progress. Will add test cases.
## How was this patch tested?

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21774 from gengliangwang/from_and_to_avro.
2018-07-20 09:19:29 -07:00
Marco Gaido a5925c1631 [SPARK-24268][SQL] Use datatype.catalogString in error messages
## What changes were proposed in this pull request?

As stated in https://github.com/apache/spark/pull/21321, in the error messages we should use `catalogString`. This is not the case, as SPARK-22893 used `simpleString` in order to have the same representation everywhere and it missed some places.

The PR unifies the messages using alway the `catalogString` representation of the dataTypes in the messages.

## How was this patch tested?

existing/modified UTs

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21804 from mgaido91/SPARK-24268_catalog.
2018-07-19 23:29:29 -07:00
Maxim Gekk cd5d93c0e4 [SPARK-24854][SQL] Gathering all Avro options into the AvroOptions class
## What changes were proposed in this pull request?

In the PR, I propose to put all `Avro` options in new class `AvroOptions` in the same way as for other datasources `JSON` and `CSV`.

## How was this patch tested?

It was tested by `AvroSuite`

Author: Maxim Gekk <maxim.gekk@databricks.com>

Closes #21810 from MaxGekk/avro-options.
2018-07-19 09:16:16 +08:00
Takuya UESHIN 34cb3b54e9 [SPARK-24386][SPARK-24768][BUILD][FOLLOWUP] Fix lint-java and Scala 2.12 build.
## What changes were proposed in this pull request?

This pr fixes lint-java and Scala 2.12 build.

lint-java:

```
[ERROR] src/test/resources/log4j.properties:[0] (misc) NewlineAtEndOfFile: File does not end with a newline.
```

Scala 2.12 build:

```
[error] /.../sql/core/src/main/scala/org/apache/spark/sql/execution/streaming/continuous/ContinuousCoalesceRDD.scala:121: overloaded method value addTaskCompletionListener with alternatives:
[error]   (f: org.apache.spark.TaskContext => Unit)org.apache.spark.TaskContext <and>
[error]   (listener: org.apache.spark.util.TaskCompletionListener)org.apache.spark.TaskContext
[error]  cannot be applied to (org.apache.spark.TaskContext => java.util.List[Runnable])
[error]       context.addTaskCompletionListener { ctx =>
[error]               ^
```

## How was this patch tested?

Manually executed lint-java and Scala 2.12 build in my local environment.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #21801 from ueshin/issues/SPARK-24386_24768/fix_build.
2018-07-18 19:17:18 +08:00
Maxim Gekk ba437fc5c7 [SPARK-24805][SQL] Do not ignore avro files without extensions by default
## What changes were proposed in this pull request?

In the PR, I propose to change default behaviour of AVRO datasource which currently ignores files without `.avro` extension in read by default. This PR sets the default value for `avro.mapred.ignore.inputs.without.extension` to `false` in the case if the parameter is not set by an user.

## How was this patch tested?

Added a test file without extension in AVRO format, and new test for reading the file with and wihout specified schema.

Author: Maxim Gekk <maxim.gekk@databricks.com>
Author: Maxim Gekk <max.gekk@gmail.com>

Closes #21769 from MaxGekk/avro-without-extension.
2018-07-16 14:35:44 -07:00
Maxim Gekk 9f929458fb [SPARK-24810][SQL] Fix paths to test files in AvroSuite
## What changes were proposed in this pull request?

In the PR, I propose to move `testFile()` to the common trait `SQLTestUtilsBase` and wrap test files in `AvroSuite` by the method `testFile()` which returns full paths to test files in the resource folder.

Author: Maxim Gekk <maxim.gekk@databricks.com>

Closes #21773 from MaxGekk/test-file.
2018-07-15 23:01:36 -07:00
Gengliang Wang 9603087638 [SPARK-24800][SQL] Refactor Avro Serializer and Deserializer
## What changes were proposed in this pull request?
Currently the Avro Deserializer converts input Avro format data to `Row`, and then convert the `Row` to `InternalRow`.
While the Avro Serializer converts `InternalRow` to `Row`, and then output Avro format data.
This PR allows direct conversion between `InternalRow` and Avro format data.

## How was this patch tested?

Unit test

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21762 from gengliangwang/avro_io.
2018-07-15 22:06:33 +08:00
Gengliang Wang 3e7dc82960 [SPARK-24776][SQL] Avro unit test: deduplicate code and replace deprecated methods
## What changes were proposed in this pull request?

Improve Avro unit test:
1. use QueryTest/SharedSQLContext/SQLTestUtils, instead of the duplicated test utils.
2. replace deprecated methods

This is a follow up PR for #21760, the PR passes pull request tests but failed in: https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Compile/job/spark-master-compile-maven-hadoop-2.6/7842/

This PR is to fix it.
## How was this patch tested?
Unit test.
Compile with different commands:

```
./build/mvn --force -DzincPort=3643 -DskipTests -Phadoop-2.6 -Phive-thriftserver -Pkinesis-asl -Pspark-ganglia-lgpl -Pmesos -Pyarn  compile test-compile
./build/mvn --force -DzincPort=3643 -DskipTests -Phadoop-2.7 -Phive-thriftserver -Pkinesis-asl -Pspark-ganglia-lgpl -Pmesos -Pyarn  compile test-compile
./build/mvn --force -DzincPort=3643 -DskipTests -Phadoop-3.1 -Phive-thriftserver -Pkinesis-asl -Pspark-ganglia-lgpl -Pmesos -Pyarn  compile test-compile

```

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21768 from gengliangwang/improve_avro_test.
2018-07-14 21:36:56 -07:00
Xiao Li 3bcb1b4814 Revert "[SPARK-24776][SQL] Avro unit test: use SQLTestUtils and replace deprecated methods"
This reverts commit c1b62e420a.
2018-07-13 10:06:26 -07:00
Gengliang Wang c1b62e420a [SPARK-24776][SQL] Avro unit test: use SQLTestUtils and replace deprecated methods
## What changes were proposed in this pull request?
Improve Avro unit test:
1. use QueryTest/SharedSQLContext/SQLTestUtils, instead of the duplicated test utils.
2. replace deprecated methods

## How was this patch tested?

Unit test

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21760 from gengliangwang/improve_avro_test.
2018-07-13 08:55:46 -07:00
Yuanbo Liu 0f24c6f8ab [SPARK-24713] AppMatser of spark streaming kafka OOM if there are hund…
We have hundreds of kafka topics need to be consumed in one application. The application master will throw OOM exception after hanging for nearly half of an hour.

OOM happens in the env with a lot of topics, and it's not convenient to set up such kind of env in the unit test. So I didn't change/add test case.

Author: Yuanbo Liu <yuanbo@Yuanbos-MacBook-Air.local>
Author: yuanbo <yuanbo@apache.org>

Closes #21690 from yuanboliu/master.
2018-07-13 07:37:24 -06:00
Gengliang Wang 395860a986 [SPARK-24768][SQL] Have a built-in AVRO data source implementation
## What changes were proposed in this pull request?

Apache Avro (https://avro.apache.org) is a popular data serialization format. It is widely used in the Spark and Hadoop ecosystem, especially for Kafka-based data pipelines.  Using the external package https://github.com/databricks/spark-avro, Spark SQL can read and write the avro data. Making spark-Avro built-in can provide a better experience for first-time users of Spark SQL and structured streaming. We expect the built-in Avro data source can further improve the adoption of structured streaming.
The proposal is to inline code from spark-avro package (https://github.com/databricks/spark-avro). The target release is Spark 2.4.

[Built-in AVRO Data Source In Spark 2.4.pdf](https://github.com/apache/spark/files/2181511/Built-in.AVRO.Data.Source.In.Spark.2.4.pdf)

## How was this patch tested?

Unit test

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21742 from gengliangwang/export_avro.
2018-07-12 13:55:25 -07:00
Yash Sharma 9fa4a1ed38 [SPARK-20168][STREAMING KINESIS] Setting the timestamp directly would cause exception on …
Setting the timestamp directly would cause exception on reading stream, it can be set directly only if the mode is not AT_TIMESTAMP

## What changes were proposed in this pull request?

The last patch in the kinesis streaming receiver sets the timestamp for the mode AT_TIMESTAMP, but this mode can only be set via the

`baseClientLibConfiguration.withTimestampAtInitialPositionInStream()
`
and can't be set directly using
`.withInitialPositionInStream()`

This patch fixes the issue.

## How was this patch tested?
Kinesis Receiver doesn't expose the internal state outside, so couldn't find the right way to test this change. Seeking for tips from other contributors here.

Author: Yash Sharma <ysharma@atlassian.com>

Closes #21541 from yashs360/ysharma/fix_kinesis_bug.
2018-07-12 10:04:47 -07:00
Xiao Li aec966b05e Revert "[SPARK-24268][SQL] Use datatype.simpleString in error messages"
This reverts commit 1bd3d61f41.
2018-07-09 14:24:23 -07:00
Marco Gaido 1bd3d61f41 [SPARK-24268][SQL] Use datatype.simpleString in error messages
## What changes were proposed in this pull request?

SPARK-22893 tried to unify error messages about dataTypes. Unfortunately, still many places were missing the `simpleString` method in other to have the same representation everywhere.

The PR unified the messages using alway the simpleString representation of the dataTypes in the messages.

## How was this patch tested?

existing/modified UTs

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21321 from mgaido91/SPARK-24268.
2018-07-09 22:59:05 +08:00
Marcelo Vanzin 6d16b9885d [SPARK-24552][CORE][SQL] Use task ID instead of attempt number for writes.
This passes the unique task attempt id instead of attempt number to v2 data sources because attempt number is reused when stages are retried. When attempt numbers are reused, sources that track data by partition id and attempt number may incorrectly clean up data because the same attempt number can be both committed and aborted.

For v1 / Hadoop writes, generate a unique ID based on available attempt numbers to avoid a similar problem.

Closes #21558

Author: Marcelo Vanzin <vanzin@cloudera.com>
Author: Ryan Blue <blue@apache.org>

Closes #21606 from vanzin/SPARK-24552.2.
2018-06-25 16:54:57 -07:00
Shixiong Zhu 53c06ddabb [SPARK-24332][SS][MESOS] Fix places reading 'spark.network.timeout' as milliseconds
## What changes were proposed in this pull request?

This PR replaces `getTimeAsMs` with `getTimeAsSeconds` to fix the issue that reading "spark.network.timeout" using a wrong time unit when the user doesn't specify a time out.

## How was this patch tested?

Jenkins

Author: Shixiong Zhu <zsxwing@gmail.com>

Closes #21382 from zsxwing/fix-network-timeout-conf.
2018-05-24 13:00:24 -07:00
Gabor Somogyi 79e06faa4e [SPARK-19185][DSTREAMS] Avoid concurrent use of cached consumers in CachedKafkaConsumer
## What changes were proposed in this pull request?

`CachedKafkaConsumer` in the project streaming-kafka-0-10 is designed to maintain a pool of KafkaConsumers that can be reused. However, it was built with the assumption there will be only one thread trying to read the same Kafka TopicPartition at the same time. This assumption is not true all the time and this can inadvertently lead to ConcurrentModificationException.

Here is a better way to design this. The consumer pool should be smart enough to avoid concurrent use of a cached consumer. If there is another request for the same TopicPartition as a currently in-use consumer, the pool should automatically return a fresh consumer.

- There are effectively two kinds of consumer that may be generated
  - Cached consumer - this should be returned to the pool at task end
  - Non-cached consumer - this should be closed at task end
- A trait called `KafkaDataConsumer` is introduced to hide this difference from the users of the consumer so that the client code does not have to reason about whether to stop and release. They simply call `val consumer = KafkaDataConsumer.acquire` and then `consumer.release`.
- If there is request for a consumer that is in-use, then a new consumer is generated.
- If there is request for a consumer which is a task reattempt, then already existing cached consumer will be invalidated and a new consumer is generated. This could fix potential issues if the source of the reattempt is a malfunctioning consumer.
- In addition, I renamed the `CachedKafkaConsumer` class to `KafkaDataConsumer` because is a misnomer given that what it returns may or may not be cached.

## How was this patch tested?

A new stress test that verifies it is safe to concurrently get consumers for the same TopicPartition from the consumer pool.

Author: Gabor Somogyi <gabor.g.somogyi@gmail.com>

Closes #20997 from gaborgsomogyi/SPARK-19185.
2018-05-22 13:43:45 -07:00
Arun Mahadevan 710e4e81a8 [SPARK-24308][SQL] Handle DataReaderFactory to InputPartition rename in left over classes
## What changes were proposed in this pull request?

SPARK-24073 renames DataReaderFactory -> InputPartition and DataReader -> InputPartitionReader. Some classes still reflects the old name and causes confusion. This patch renames the left over classes to reflect the new interface and fixes a few comments.

## How was this patch tested?

Existing unit tests.

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: Arun Mahadevan <arunm@apache.org>

Closes #21355 from arunmahadevan/SPARK-24308.
2018-05-18 14:37:01 -07:00
Ryan Blue 62d01391fe [SPARK-24073][SQL] Rename DataReaderFactory to InputPartition.
## What changes were proposed in this pull request?

Renames:
* `DataReaderFactory` to `InputPartition`
* `DataReader` to `InputPartitionReader`
* `createDataReaderFactories` to `planInputPartitions`
* `createUnsafeDataReaderFactories` to `planUnsafeInputPartitions`
* `createBatchDataReaderFactories` to `planBatchInputPartitions`

This fixes the changes in SPARK-23219, which renamed ReadTask to
DataReaderFactory. The intent of that change was to make the read and
write API match (write side uses DataWriterFactory), but the underlying
problem is that the two classes are not equivalent.

ReadTask/DataReader function as Iterable/Iterator. One InputPartition is
a specific partition of the data to be read, in contrast to
DataWriterFactory where the same factory instance is used in all write
tasks. InputPartition's purpose is to manage the lifecycle of the
associated reader, which is now called InputPartitionReader, with an
explicit create operation to mirror the close operation. This was no
longer clear from the API because DataReaderFactory appeared to be more
generic than it is and it isn't clear why a set of them is produced for
a read.

## How was this patch tested?

Existing tests, which have been updated to use the new name.

Author: Ryan Blue <blue@apache.org>

Closes #21145 from rdblue/SPARK-24073-revert-data-reader-factory-rename.
2018-05-09 21:48:54 -07:00
Tathagata Das d1eb8d3ddc [SPARK-24094][SS][MINOR] Change description strings of v2 streaming sources to reflect the change
## What changes were proposed in this pull request?

This makes it easy to understand at runtime which version is running. Great for debugging production issues.

## How was this patch tested?
Not necessary.

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #21160 from tdas/SPARK-24094.
2018-04-25 23:24:05 -07:00
Tathagata Das 396938ef02 [SPARK-24050][SS] Calculate input / processing rates correctly for DataSourceV2 streaming sources
## What changes were proposed in this pull request?

In some streaming queries, the input and processing rates are not calculated at all (shows up as zero) because MicroBatchExecution fails to associated metrics from the executed plan of a trigger with the sources in the logical plan of the trigger. The way this executed-plan-leaf-to-logical-source attribution works is as follows. With V1 sources, there was no way to identify which execution plan leaves were generated by a streaming source. So did a best-effort attempt to match logical and execution plan leaves when the number of leaves were same. In cases where the number of leaves is different, we just give up and report zero rates. An example where this may happen is as follows.

```
val cachedStaticDF = someStaticDF.union(anotherStaticDF).cache()
val streamingInputDF = ...

val query = streamingInputDF.join(cachedStaticDF).writeStream....
```
In this case, the `cachedStaticDF` has multiple logical leaves, but in the trigger's execution plan it only has leaf because a cached subplan is represented as a single InMemoryTableScanExec leaf. This leads to a mismatch in the number of leaves causing the input rates to be computed as zero.

With DataSourceV2, all inputs are represented in the executed plan using `DataSourceV2ScanExec`, each of which has a reference to the associated logical `DataSource` and `DataSourceReader`. So its easy to associate the metrics to the original streaming sources.

In this PR, the solution is as follows. If all the streaming sources in a streaming query as v2 sources, then use a new code path where the execution-metrics-to-source mapping is done directly. Otherwise we fall back to existing mapping logic.

## How was this patch tested?
- New unit tests using V2 memory source
- Existing unit tests using V1 source

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #21126 from tdas/SPARK-24050.
2018-04-25 12:21:55 -07:00
Tathagata Das 7b1e6523af [SPARK-24056][SS] Make consumer creation lazy in Kafka source for Structured streaming
## What changes were proposed in this pull request?

Currently, the driver side of the Kafka source (i.e. KafkaMicroBatchReader) eagerly creates a consumer as soon as the Kafk aMicroBatchReader is created. However, we create dummy KafkaMicroBatchReader to get the schema and immediately stop it. Its better to make the consumer creation lazy, it will be created on the first attempt to fetch offsets using the KafkaOffsetReader.

## How was this patch tested?
Existing unit tests

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #21134 from tdas/SPARK-24056.
2018-04-24 14:33:33 -07:00
liuzhaokun 448d248f89 [SPARK-21168] KafkaRDD should always set kafka clientId.
[https://issues.apache.org/jira/browse/SPARK-21168](https://issues.apache.org/jira/browse/SPARK-21168)
There are no a number of other places that a client ID should be set,and I think we should use consumer.clientId in the clientId method,because the fetch request  will be used by the same consumer behind.

Author: liuzhaokun <liu.zhaokun@zte.com.cn>

Closes #19887 from liu-zhaokun/master1205.
2018-04-23 13:56:11 -05:00
jerryshao 5fccdae189 [SPARK-22968][DSTREAM] Throw an exception on partition revoking issue
## What changes were proposed in this pull request?

Kafka partitions can be revoked when new consumers joined in the consumer group to rebalance the partitions. But current Spark Kafka connector code makes sure there's no partition revoking scenarios, so trying to get latest offset from revoked partitions will throw exceptions as JIRA mentioned.

Partition revoking happens when new consumer joined the consumer group, which means different streaming apps are trying to use same group id. This is fundamentally not correct, different apps should use different consumer group. So instead of throwing an confused exception from Kafka, improve the exception message by identifying revoked partition and directly throw an meaningful exception when partition is revoked.

Besides, this PR also fixes bugs in `DirectKafkaWordCount`, this example simply cannot be worked without the fix.

```
8/01/05 09:48:27 INFO internals.ConsumerCoordinator: Revoking previously assigned partitions [kssh-7, kssh-4, kssh-3, kssh-6, kssh-5, kssh-0, kssh-2, kssh-1] for group use_a_separate_group_id_for_each_stream
18/01/05 09:48:27 INFO internals.AbstractCoordinator: (Re-)joining group use_a_separate_group_id_for_each_stream
18/01/05 09:48:27 INFO internals.AbstractCoordinator: Successfully joined group use_a_separate_group_id_for_each_stream with generation 4
18/01/05 09:48:27 INFO internals.ConsumerCoordinator: Setting newly assigned partitions [kssh-7, kssh-4, kssh-6, kssh-5] for group use_a_separate_group_id_for_each_stream
```

## How was this patch tested?

This is manually verified in local cluster, unfortunately I'm not sure how to simulate it in UT, so propose the PR without UT added.

Author: jerryshao <sshao@hortonworks.com>

Closes #21038 from jerryshao/SPARK-22968.
2018-04-17 21:08:42 -05:00
Marco Gaido 0a9172a05e [SPARK-23835][SQL] Add not-null check to Tuples' arguments deserialization
## What changes were proposed in this pull request?

There was no check on nullability for arguments of `Tuple`s. This could lead to have weird behavior when a null value had to be deserialized into a non-nullable Scala object: in those cases, the `null` got silently transformed in a valid value (like `-1` for `Int`), corresponding to the default value we are using in the SQL codebase. This situation was very likely to happen when deserializing to a Tuple of primitive Scala types (like Double, Int, ...).

The PR adds the `AssertNotNull` to arguments of tuples which have been asked to be converted to non-nullable types.

## How was this patch tested?

added UT

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #20976 from mgaido91/SPARK-23835.
2018-04-17 21:45:20 +08:00
Nolan Emirot 32471ba0af Fix typo in Python docstring kinesis example
## What changes were proposed in this pull request?

(Please fill in changes proposed in this fix)

## How was this patch tested?

(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: Nolan Emirot <nolan@turo.com>

Closes #20990 from emirot/kinesis_stream_example_typo.
2018-04-09 08:04:02 -05:00
Kazuaki Ishizaki a7c19d9c21 [SPARK-23713][SQL] Cleanup UnsafeWriter and BufferHolder classes
## What changes were proposed in this pull request?

This PR implemented the following cleanups related to  `UnsafeWriter` class:
- Remove code duplication between `UnsafeRowWriter` and `UnsafeArrayWriter`
- Make `BufferHolder` class internal by delegating its accessor methods to `UnsafeWriter`
- Replace `UnsafeRow.setTotalSize(...)` with `UnsafeRowWriter.setTotalSize()`

## How was this patch tested?

Tested by existing UTs

Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com>

Closes #20850 from kiszk/SPARK-23713.
2018-04-02 21:48:44 +02:00
akonopko 2b89e4aa2e [SPARK-18580][DSTREAM][KAFKA] Add spark.streaming.backpressure.initialRate to direct Kafka streams
## What changes were proposed in this pull request?

Add `spark.streaming.backpressure.initialRate` to direct Kafka Streams for Kafka 0.8 and 0.10
This is required in order to be able to use backpressure with huge lags, which cannot be processed at once. Without this parameter `DirectKafkaInputDStream` with backpressure enabled would try to get all the possible data from Kafka before adjusting consumption rate

## How was this patch tested?

- Tests added to `org/apache/spark/streaming/kafka010/DirectKafkaStreamSuite.scala` and `org/apache/spark/streaming/kafka/DirectKafkaStreamSuite.scala`
- Manual tests on YARN cluster

Author: akonopko <alex.konopko@teamaol.com>
Author: Alexander Konopko <alexander.konopko@gmail.com>

Closes #19431 from akonopko/SPARK-18580-initialrate.
2018-03-21 14:40:21 -05:00
Tathagata Das bd201bf61e [SPARK-23623][SS] Avoid concurrent use of cached consumers in CachedKafkaConsumer
## What changes were proposed in this pull request?

CacheKafkaConsumer in the project `kafka-0-10-sql` is designed to maintain a pool of KafkaConsumers that can be reused. However, it was built with the assumption there will be only one task using trying to read the same Kafka TopicPartition at the same time. Hence, the cache was keyed by the TopicPartition a consumer is supposed to read. And any cases where this assumption may not be true, we have SparkPlan flag to disable the use of a cache. So it was up to the planner to correctly identify when it was not safe to use the cache and set the flag accordingly.

Fundamentally, this is the wrong way to approach the problem. It is HARD for a high-level planner to reason about the low-level execution model, whether there will be multiple tasks in the same query trying to read the same partition. Case in point, 2.3.0 introduced stream-stream joins, and you can build a streaming self-join query on Kafka. It's pretty non-trivial to figure out how this leads to two tasks reading the same partition twice, possibly concurrently. And due to the non-triviality, it is hard to figure this out in the planner and set the flag to avoid the cache / consumer pool. And this can inadvertently lead to ConcurrentModificationException ,or worse, silent reading of incorrect data.

Here is a better way to design this. The planner shouldnt have to understand these low-level optimizations. Rather the consumer pool should be smart enough avoid concurrent use of a cached consumer. Currently, it tries to do so but incorrectly (the flag inuse is not checked when returning a cached consumer, see [this](https://github.com/apache/spark/blob/master/external/kafka-0-10-sql/src/main/scala/org/apache/spark/sql/kafka010/CachedKafkaConsumer.scala#L403)). If there is another request for the same partition as a currently in-use consumer, the pool should automatically return a fresh consumer that should be closed when the task is done. Then the planner does not have to have a flag to avoid reuses.

This PR is a step towards that goal. It does the following.
- There are effectively two kinds of consumer that may be generated
  - Cached consumer - this should be returned to the pool at task end
  - Non-cached consumer - this should be closed at task end
- A trait called KafkaConsumer is introduced to hide this difference from the users of the consumer so that the client code does not have to reason about whether to stop and release. They simply called `val consumer = KafkaConsumer.acquire` and then `consumer.release()`.
- If there is request for a consumer that is in-use, then a new consumer is generated.
- If there is a concurrent attempt of the same task, then a new consumer is generated, and the existing cached consumer is marked for close upon release.
- In addition, I renamed the classes because CachedKafkaConsumer is a misnomer given that what it returns may or may not be cached.

This PR does not remove the planner flag to avoid reuse to make this patch safe enough for merging in branch-2.3. This can be done later in master-only.

## How was this patch tested?
A new stress test that verifies it is safe to concurrently get consumers for the same partition from the consumer pool.

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #20767 from tdas/SPARK-23623.
2018-03-16 11:11:07 -07:00
Sebastian Arzt dffeac3691 [SPARK-18371][STREAMING] Spark Streaming backpressure generates batch with large number of records
## What changes were proposed in this pull request?

Omit rounding of backpressure rate. Effects:
- no batch with large number of records is created when rate from PID estimator is one
- the number of records per batch and partition is more fine-grained improving backpressure accuracy

## How was this patch tested?

This was tested by running:
- `mvn test -pl external/kafka-0-8`
- `mvn test -pl external/kafka-0-10`
- a streaming application which was suffering from the issue

JasonMWhite

The contribution is my original work and I license the work to the project under the project’s open source license

Author: Sebastian Arzt <sebastian.arzt@plista.com>

Closes #17774 from arzt/kafka-back-pressure.
2018-03-16 12:25:58 -05:00
Yuanjian Li 7c3e8995f1 [SPARK-23533][SS] Add support for changing ContinuousDataReader's startOffset
## What changes were proposed in this pull request?

As discussion in #20675, we need add a new interface `ContinuousDataReaderFactory` to support the requirements of setting start offset in Continuous Processing.

## How was this patch tested?

Existing UT.

Author: Yuanjian Li <xyliyuanjian@gmail.com>

Closes #20689 from xuanyuanking/SPARK-23533.
2018-03-15 00:04:28 -07:00
Wenchen Fan ad640a5aff [SPARK-23303][SQL] improve the explain result for data source v2 relations
## What changes were proposed in this pull request?

The proposed explain format:
**[streaming header] [RelationV2/ScanV2] [data source name] [output] [pushed filters] [options]**

**streaming header**: if it's a streaming relation, put a "Streaming" at the beginning.
**RelationV2/ScanV2**: if it's a logical plan, put a "RelationV2", else, put a "ScanV2"
**data source name**: the simple class name of the data source implementation
**output**: a string of the plan output attributes
**pushed filters**: a string of all the filters that have been pushed to this data source
**options**: all the options to create the data source reader.

The current explain result for data source v2 relation is unreadable:
```
== Parsed Logical Plan ==
'Filter ('i > 6)
+- AnalysisBarrier
      +- Project [j#1]
         +- DataSourceV2Relation [i#0, j#1], org.apache.spark.sql.sources.v2.AdvancedDataSourceV2$Reader3b415940

== Analyzed Logical Plan ==
j: int
Project [j#1]
+- Filter (i#0 > 6)
   +- Project [j#1, i#0]
      +- DataSourceV2Relation [i#0, j#1], org.apache.spark.sql.sources.v2.AdvancedDataSourceV2$Reader3b415940

== Optimized Logical Plan ==
Project [j#1]
+- Filter isnotnull(i#0)
   +- DataSourceV2Relation [i#0, j#1], org.apache.spark.sql.sources.v2.AdvancedDataSourceV2$Reader3b415940

== Physical Plan ==
*(1) Project [j#1]
+- *(1) Filter isnotnull(i#0)
   +- *(1) DataSourceV2Scan [i#0, j#1], org.apache.spark.sql.sources.v2.AdvancedDataSourceV2$Reader3b415940
```

after this PR
```
== Parsed Logical Plan ==
'Project [unresolvedalias('j, None)]
+- AnalysisBarrier
      +- RelationV2 AdvancedDataSourceV2[i#0, j#1]

== Analyzed Logical Plan ==
j: int
Project [j#1]
+- RelationV2 AdvancedDataSourceV2[i#0, j#1]

== Optimized Logical Plan ==
RelationV2 AdvancedDataSourceV2[j#1]

== Physical Plan ==
*(1) ScanV2 AdvancedDataSourceV2[j#1]
```
-------
```
== Analyzed Logical Plan ==
i: int, j: int
Filter (i#88 > 3)
+- RelationV2 JavaAdvancedDataSourceV2[i#88, j#89]

== Optimized Logical Plan ==
Filter isnotnull(i#88)
+- RelationV2 JavaAdvancedDataSourceV2[i#88, j#89] (Pushed Filters: [GreaterThan(i,3)])

== Physical Plan ==
*(1) Filter isnotnull(i#88)
+- *(1) ScanV2 JavaAdvancedDataSourceV2[i#88, j#89] (Pushed Filters: [GreaterThan(i,3)])
```

an example for streaming query
```
== Parsed Logical Plan ==
Aggregate [value#6], [value#6, count(1) AS count(1)#11L]
+- SerializeFromObject [staticinvoke(class org.apache.spark.unsafe.types.UTF8String, StringType, fromString, input[0, java.lang.String, true], true, false) AS value#6]
   +- MapElements <function1>, class java.lang.String, [StructField(value,StringType,true)], obj#5: java.lang.String
      +- DeserializeToObject cast(value#25 as string).toString, obj#4: java.lang.String
         +- Streaming RelationV2 MemoryStreamDataSource[value#25]

== Analyzed Logical Plan ==
value: string, count(1): bigint
Aggregate [value#6], [value#6, count(1) AS count(1)#11L]
+- SerializeFromObject [staticinvoke(class org.apache.spark.unsafe.types.UTF8String, StringType, fromString, input[0, java.lang.String, true], true, false) AS value#6]
   +- MapElements <function1>, class java.lang.String, [StructField(value,StringType,true)], obj#5: java.lang.String
      +- DeserializeToObject cast(value#25 as string).toString, obj#4: java.lang.String
         +- Streaming RelationV2 MemoryStreamDataSource[value#25]

== Optimized Logical Plan ==
Aggregate [value#6], [value#6, count(1) AS count(1)#11L]
+- SerializeFromObject [staticinvoke(class org.apache.spark.unsafe.types.UTF8String, StringType, fromString, input[0, java.lang.String, true], true, false) AS value#6]
   +- MapElements <function1>, class java.lang.String, [StructField(value,StringType,true)], obj#5: java.lang.String
      +- DeserializeToObject value#25.toString, obj#4: java.lang.String
         +- Streaming RelationV2 MemoryStreamDataSource[value#25]

== Physical Plan ==
*(4) HashAggregate(keys=[value#6], functions=[count(1)], output=[value#6, count(1)#11L])
+- StateStoreSave [value#6], state info [ checkpoint = *********(redacted)/cloud/dev/spark/target/tmp/temporary-549f264b-2531-4fcb-a52f-433c77347c12/state, runId = f84d9da9-2f8c-45c1-9ea1-70791be684de, opId = 0, ver = 0, numPartitions = 5], Complete, 0
   +- *(3) HashAggregate(keys=[value#6], functions=[merge_count(1)], output=[value#6, count#16L])
      +- StateStoreRestore [value#6], state info [ checkpoint = *********(redacted)/cloud/dev/spark/target/tmp/temporary-549f264b-2531-4fcb-a52f-433c77347c12/state, runId = f84d9da9-2f8c-45c1-9ea1-70791be684de, opId = 0, ver = 0, numPartitions = 5]
         +- *(2) HashAggregate(keys=[value#6], functions=[merge_count(1)], output=[value#6, count#16L])
            +- Exchange hashpartitioning(value#6, 5)
               +- *(1) HashAggregate(keys=[value#6], functions=[partial_count(1)], output=[value#6, count#16L])
                  +- *(1) SerializeFromObject [staticinvoke(class org.apache.spark.unsafe.types.UTF8String, StringType, fromString, input[0, java.lang.String, true], true, false) AS value#6]
                     +- *(1) MapElements <function1>, obj#5: java.lang.String
                        +- *(1) DeserializeToObject value#25.toString, obj#4: java.lang.String
                           +- *(1) ScanV2 MemoryStreamDataSource[value#25]
```
## How was this patch tested?

N/A

Author: Wenchen Fan <wenchen@databricks.com>

Closes #20647 from cloud-fan/explain.
2018-03-05 20:35:14 -08:00