### What changes were proposed in this pull request?
Previous comment was true for Apache Spark 2.3.0. The 2.4.0 release brought multiple watermark policy and therefore stating that the 'min' is always chosen is misleading.
This PR updates the comments about multiple watermark policy. They aren't true anymore since in case of multiple watermarks, we can configure which one will be applied to the query. This change was brought with Apache Spark 2.4.0 release.
### Why are the changes needed?
It introduces some confusion about the real execution of the commented code.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
The tests weren't added because the change is only about the documentation level. I affirm that the contribution is my original work and that I license the work to the project under the project's open source license.
Closes#25832 from bartosz25/fix_comments_multiple_watermark_policy.
Authored-by: bartosz25 <bartkonieczny@yahoo.fr>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
This proposes to improve Spark instrumentation by adding a hook for user-defined metrics, extending Spark’s Dropwizard/Codahale metrics system.
The original motivation of this work was to add instrumentation for S3 filesystem access metrics by Spark job. Currently, [[ExecutorSource]] instruments HDFS and local filesystem metrics. Rather than extending the code there, we proposes with this JIRA to add a metrics plugin system which is of more flexible and general use.
Context: The Spark metrics system provides a large variety of metrics, see also , useful to monitor and troubleshoot Spark workloads. A typical workflow is to sink the metrics to a storage system and build dashboards on top of that.
Highlights:
- The metric plugin system makes it easy to implement instrumentation for S3 access by Spark jobs.
- The metrics plugin system allows for easy extensions of how Spark collects HDFS-related workload metrics. This is currently done using the Hadoop Filesystem GetAllStatistics method, which is deprecated in recent versions of Hadoop. Recent versions of Hadoop Filesystem recommend using method GetGlobalStorageStatistics, which also provides several additional metrics. GetGlobalStorageStatistics is not available in Hadoop 2.7 (had been introduced in Hadoop 2.8). Using a metric plugin for Spark would allow an easy way to “opt in” using such new API calls for those deploying suitable Hadoop versions.
- We also have the use case of adding Hadoop filesystem monitoring for a custom Hadoop compliant filesystem in use in our organization (EOS using the XRootD protocol). The metrics plugin infrastructure makes this easy to do. Others may have similar use cases.
- More generally, this method makes it straightforward to plug in Filesystem and other metrics to the Spark monitoring system. Future work on plugin implementation can address extending monitoring to measure usage of external resources (OS, filesystem, network, accelerator cards, etc), that maybe would not normally be considered general enough for inclusion in Apache Spark code, but that can be nevertheless useful for specialized use cases, tests or troubleshooting.
Implementation:
The proposed implementation extends and modifies the work on Executor Plugin of SPARK-24918. Additionally, this is related to recent work on extending Spark executor metrics, such as SPARK-25228.
As discussed during the review, the implementaiton of this feature modifies the Developer API for Executor Plugins, such that the new version is incompatible with the original version in Spark 2.4.
## How was this patch tested?
This modifies existing tests for ExecutorPluginSuite to adapt them to the API changes. In addition, the new funtionality for registering pluginMetrics has been manually tested running Spark on YARN and K8S clusters, in particular for monitoring S3 and for extending HDFS instrumentation with the Hadoop Filesystem “GetGlobalStorageStatistics” metrics. Executor metric plugin example and code used for testing are available, for example at: https://github.com/cerndb/SparkExecutorPluginsCloses#24901 from LucaCanali/executorMetricsPlugin.
Authored-by: Luca Canali <luca.canali@cern.ch>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
## What changes were proposed in this pull request?
It upgrades ORC from 1.5.5 to 1.5.6 and adds closes the ORC readers when they aren't used to
create RecordReaders.
## How was this patch tested?
The changed unit tests were run.
Closes#25006 from omalley/spark-28208.
Lead-authored-by: Owen O'Malley <omalley@apache.org>
Co-authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
Simplify the return type for `lookupV2Relation` which makes the 3 callers more straightforward.
## How was this patch tested?
Existing unit tests.
Closes#25735 from jzhuge/lookupv2relation.
Authored-by: John Zhuge <jzhuge@apache.org>
Signed-off-by: Burak Yavuz <brkyvz@gmail.com>
HDFS doesn't update the file size reported by the NM if you just keep
writing to the file; this makes the SHS believe the file is inactive,
and so it may delete it after the configured max age for log files.
This change uses hsync to keep the log file as up to date as possible
when using HDFS. It also disables erasure coding by default for these
logs, since hsync (& friends) does not work with EC.
Tested with a SHS configured to aggressively clean up logs; verified
a spark-shell session kept updating the log, which was not deleted by
the SHS.
Closes#25819 from vanzin/SPARK-29105.
Authored-by: Marcelo Vanzin <vanzin@cloudera.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
### What changes were proposed in this pull request?
1,GMM: obtaining the prediction (double) from its probabilty prediction(vector)
2,GLR: obtaining the prediction (double) from its link prediction(double)
### Why are the changes needed?
it avoid predict twice
### Does this PR introduce any user-facing change?
no
### How was this patch tested?
existing tests
Closes#25815 from zhengruifeng/gmm_transform_opt.
Authored-by: zhengruifeng <ruifengz@foxmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
### What changes were proposed in this pull request?
#DataSet
fruit,color,price,quantity
apple,red,1,3
banana,yellow,2,4
orange,orange,3,5
xxx
This PR aims to fix the below
```
scala> spark.conf.set("spark.sql.csv.parser.columnPruning.enabled", false)
scala> spark.read.option("header", "true").option("mode", "DROPMALFORMED").csv("fruit.csv").count
res1: Long = 4
```
This is caused by the issue [SPARK-24645](https://issues.apache.org/jira/browse/SPARK-24645).
SPARK-24645 issue can also be solved by [SPARK-25387](https://issues.apache.org/jira/browse/SPARK-25387)
### Why are the changes needed?
SPARK-24645 caused this regression, so reverted the code as it can also be solved by SPARK-25387
### Does this PR introduce any user-facing change?
No,
### How was this patch tested?
Added UT, and also tested the bug SPARK-24645
**SPARK-24645 regression**
Closes#25820 from sandeep-katta/SPARK-29101.
Authored-by: sandeep katta <sandeep.katta2007@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
The str of `CapaturedException` is now returned by str(self.desc) rather than repr(self.desc), which is more user-friendly. It also handles unicode under python2 specially.
### Why are the changes needed?
This is an improvement, and makes exception more human readable in python side.
### Does this PR introduce any user-facing change?
Before this pr, select `中文字段` throws exception something likes below:
```
Traceback (most recent call last):
File "/Users/advancedxy/code_workspace/github/spark/python/pyspark/sql/tests/test_utils.py", line 34, in test_capture_user_friendly_exception
raise e
AnalysisException: u"cannot resolve '`\u4e2d\u6587\u5b57\u6bb5`' given input columns: []; line 1 pos 7;\n'Project ['\u4e2d\u6587\u5b57\u6bb5]\n+- OneRowRelation\n"
```
after this pr:
```
Traceback (most recent call last):
File "/Users/advancedxy/code_workspace/github/spark/python/pyspark/sql/tests/test_utils.py", line 34, in test_capture_user_friendly_exception
raise e
AnalysisException: cannot resolve '`中文字段`' given input columns: []; line 1 pos 7;
'Project ['中文字段]
+- OneRowRelation
```
### How was this patch
Add a new test to verify unicode are correctly converted and manual checks for thrown exceptions.
This pr's credits should go to uncleGen and is based on https://github.com/apache/spark/pull/17267Closes#25814 from advancedxy/python_exception_19926_and_21045.
Authored-by: Xianjin YE <advancedxy@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Supported special string values for `TIMESTAMP` type. They are simply notational shorthands that will be converted to ordinary timestamp values when read. The following string values are supported:
- `epoch [zoneId]` - `1970-01-01 00:00:00+00 (Unix system time zero)`
- `today [zoneId]` - midnight today.
- `yesterday [zoneId]` -midnight yesterday
- `tomorrow [zoneId]` - midnight tomorrow
- `now` - current query start time.
For example:
```sql
spark-sql> SELECT timestamp 'tomorrow';
2019-09-07 00:00:00
```
### Why are the changes needed?
To maintain feature parity with PostgreSQL, see [8.5.1.4. Special Values](https://www.postgresql.org/docs/12/datatype-datetime.html)
### Does this PR introduce any user-facing change?
Previously, the parser fails on the special values with the error:
```sql
spark-sql> select timestamp 'today';
Error in query:
Cannot parse the TIMESTAMP value: today(line 1, pos 7)
```
After the changes, the special values are converted to appropriate dates:
```sql
spark-sql> select timestamp 'today';
2019-09-06 00:00:00
```
### How was this patch tested?
- Added tests to `TimestampFormatterSuite` to check parsing special values from regular strings.
- Tests in `DateTimeUtilsSuite` check parsing those values from `UTF8String`
- Uncommented tests in `timestamp.sql`
Closes#25716 from MaxGekk/timestamp-special-values.
Authored-by: Maxim Gekk <max.gekk@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Fitting ALS model can be failed due to nondeterministic input data. Currently the failure is thrown by an ArrayIndexOutOfBoundsException which is not explainable for end users what is wrong in fitting.
This patch catches this exception and rethrows a more explainable one, when the input data is nondeterministic.
Because we may not exactly know the output deterministic level of RDDs produced by user code, this patch also adds a note to Scala/Python/R ALS document about the training data deterministic level.
### Why are the changes needed?
ArrayIndexOutOfBoundsException was observed during fitting ALS model. It was caused by mismatching between in/out user/item blocks during computing ratings.
If the training RDD output is nondeterministic, when fetch failure is happened, rerun part of training RDD can produce inconsistent user/item blocks.
This patch is needed to notify users ALS fitting on nondeterministic input.
### Does this PR introduce any user-facing change?
Yes. When fitting ALS model on nondeterministic input data, previously if rerun happens, users would see ArrayIndexOutOfBoundsException caused by mismatch between In/Out user/item blocks.
After this patch, a SparkException with more clear message will be thrown, and original ArrayIndexOutOfBoundsException is wrapped.
### How was this patch tested?
Tested on development cluster.
Closes#25789 from viirya/als-indeterminate-input.
Lead-authored-by: Liang-Chi Hsieh <viirya@gmail.com>
Co-authored-by: Liang-Chi Hsieh <liangchi@uber.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
### What changes were proposed in this pull request?
Updating unit description in configurations, inorder to maintain consistency across configurations.
### Why are the changes needed?
the description does not mention about suffix that can be mentioned while configuring this value.
For better user understanding
### Does this PR introduce any user-facing change?
yes. Doc description
### How was this patch tested?
generated document and checked.
Closes#25689 from PavithraRamachandran/heapsize_config.
Authored-by: Pavithra Ramachandran <pavi.rams@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
### What changes were proposed in this pull request?
1. After https://github.com/apache/spark/pull/21599, if the option "spark.sql.failOnIntegralTypeOverflow" is enabled, all the Binary Arithmetic operator will used the exact version function.
However, only `Add`/`Substract`/`Multiply` has a corresponding exact function in java.lang.Math . When the option "spark.sql.failOnIntegralTypeOverflow" is enabled, a runtime exception "BinaryArithmetics must override either exactMathMethod or genCode" is thrown if the other Binary Arithmetic operators are used, such as "Divide", "Remainder".
The exact math method should be called only when there is a corresponding function in `java.lang.Math`
2. Revise the log output of casting to `Int`/`Short`
3. Enable `spark.sql.failOnIntegralTypeOverflow` for pgSQL tests in `SQLQueryTestSuite`.
### Why are the changes needed?
1. Fix the bugs of https://github.com/apache/spark/pull/21599
2. The test case of pgSQL intends to check the overflow of integer/long type. We should enable `spark.sql.failOnIntegralTypeOverflow`.
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
Unit test.
Closes#25804 from gengliangwang/enableIntegerOverflowInSQLTest.
Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
### What changes were proposed in this pull request?
In `ApplicationMaster.Reporter` thread, fatal exception information is swallowed. It's better to expose it.
We found our thrift server was shutdown due to a fatal exception but no useful information from log.
> 19/09/16 06:59:54,498 INFO [Reporter] yarn.ApplicationMaster:54 : Final app status: FAILED, exitCode: 12, (reason: Exception was thrown 1 time(s) from Reporter thread.)
19/09/16 06:59:54,500 ERROR [Driver] thriftserver.HiveThriftServer2:91 : Error starting HiveThriftServer2
java.lang.InterruptedException: sleep interrupted
at java.lang.Thread.sleep(Native Method)
at org.apache.spark.sql.hive.thriftserver.HiveThriftServer2$.main(HiveThriftServer2.scala:160)
at org.apache.spark.sql.hive.thriftserver.HiveThriftServer2.main(HiveThriftServer2.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.deploy.yarn.ApplicationMaster$$anon$4.run(ApplicationMaster.scala:708)
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
Manual test
Closes#25810 from LantaoJin/SPARK-29112.
Authored-by: LantaoJin <jinlantao@gmail.com>
Signed-off-by: jerryshao <jerryshao@tencent.com>
### What changes were proposed in this pull request?
In this PR, I fix some annotation errors and remove meaningless annotations in project.
### Why are the changes needed?
There are some annotation errors and meaningless annotations in project.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Verified manually.
Closes#25809 from turboFei/SPARK-29113.
Authored-by: turbofei <fwang12@ebay.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
**What changes were proposed in this pull request?**
Issue 1 : modifications not required as these are different formats for the same info. In the case of a Spark DataFrame, null is correct.
Issue 2 mentioned in JIRA Spark SQL "desc formatted tablename" is not showing the header # col_name,data_type,comment , seems to be the header has been removed knowingly as part of SPARK-20954.
Issue 3:
Corrected the Last Access time, the value shall display 'UNKNOWN' as currently system wont support the last access time evaluation, since hive was setting Last access time as '0' in metastore even though spark CatalogTable last access time value set as -1. this will make the validation logic of LasAccessTime where spark sets 'UNKNOWN' value if last access time value set as -1 (means not evaluated).
**Does this PR introduce any user-facing change?**
No
**How was this patch tested?**
Locally and corrected a ut.
Attaching the test report below
Closes#25720 from sujith71955/master_describe_info.
Authored-by: s71955 <sujithchacko.2010@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This PR changes `bytesHash(data)` API invocation with the underlaying `byteHash(data, arraySeed)` invocation.
```scala
def bytesHash(data: Array[Byte]): Int = bytesHash(data, arraySeed)
```
### Why are the changes needed?
The original API is changed between Scala versions by the following commit. From Scala 2.12.9, the semantic of the function is changed. If we use the underlying form, we are safe during Scala version migration.
- 846ee2b1a4 (diff-ac889f851e109fc4387cd738d52ce177)
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
This is a kind of refactoring.
Pass the Jenkins with the existing tests.
Closes#25821 from dongjoon-hyun/SPARK-SCALA-HASH.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Until now, we are testing JDK8/11 with Hadoop-3.2. This PR aims to extend the test coverage for JDK8/Hadoop-2.7.
### Why are the changes needed?
This will prevent Hadoop 2.7 compile/package issues at PR stage.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
GitHub Action on this PR shows all three combinations now. And, this is irrelevant to Jenkins test.
Closes#25824 from dongjoon-hyun/SPARK-29125.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
`KafkaDelegationTokenSuite` fails on different platforms with the following problem:
```
19/09/11 11:07:42.690 pool-1-thread-1-SendThread(localhost:44965) DEBUG ZooKeeperSaslClient: creating sasl client: Client=zkclient/localhostEXAMPLE.COM;service=zookeeper;serviceHostname=localhost.localdomain
...
NIOServerCxn.Factory:localhost/127.0.0.1:0: Zookeeper Server failed to create a SaslServer to interact with a client during session initiation:
javax.security.sasl.SaslException: Failure to initialize security context [Caused by GSSException: No valid credentials provided (Mechanism level: Failed to find any Kerberos credentails)]
at com.sun.security.sasl.gsskerb.GssKrb5Server.<init>(GssKrb5Server.java:125)
at com.sun.security.sasl.gsskerb.FactoryImpl.createSaslServer(FactoryImpl.java:85)
at javax.security.sasl.Sasl.createSaslServer(Sasl.java:524)
at org.apache.zookeeper.util.SecurityUtils$2.run(SecurityUtils.java:233)
at org.apache.zookeeper.util.SecurityUtils$2.run(SecurityUtils.java:229)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:422)
at org.apache.zookeeper.util.SecurityUtils.createSaslServer(SecurityUtils.java:228)
at org.apache.zookeeper.server.ZooKeeperSaslServer.createSaslServer(ZooKeeperSaslServer.java:44)
at org.apache.zookeeper.server.ZooKeeperSaslServer.<init>(ZooKeeperSaslServer.java:38)
at org.apache.zookeeper.server.NIOServerCnxn.<init>(NIOServerCnxn.java:100)
at org.apache.zookeeper.server.NIOServerCnxnFactory.createConnection(NIOServerCnxnFactory.java:186)
at org.apache.zookeeper.server.NIOServerCnxnFactory.run(NIOServerCnxnFactory.java:227)
at java.lang.Thread.run(Thread.java:748)
Caused by: GSSException: No valid credentials provided (Mechanism level: Failed to find any Kerberos credentails)
at sun.security.jgss.krb5.Krb5AcceptCredential.getInstance(Krb5AcceptCredential.java:87)
at sun.security.jgss.krb5.Krb5MechFactory.getCredentialElement(Krb5MechFactory.java:127)
at sun.security.jgss.GSSManagerImpl.getCredentialElement(GSSManagerImpl.java:193)
at sun.security.jgss.GSSCredentialImpl.add(GSSCredentialImpl.java:427)
at sun.security.jgss.GSSCredentialImpl.<init>(GSSCredentialImpl.java:62)
at sun.security.jgss.GSSManagerImpl.createCredential(GSSManagerImpl.java:154)
at com.sun.security.sasl.gsskerb.GssKrb5Server.<init>(GssKrb5Server.java:108)
... 13 more
NIOServerCxn.Factory:localhost/127.0.0.1:0: Client attempting to establish new session at /127.0.0.1:33742
SyncThread:0: Creating new log file: log.1
SyncThread:0: Established session 0x100003736ae0000 with negotiated timeout 10000 for client /127.0.0.1:33742
pool-1-thread-1-SendThread(localhost:35625): Session establishment complete on server localhost/127.0.0.1:35625, sessionid = 0x100003736ae0000, negotiated timeout = 10000
pool-1-thread-1-SendThread(localhost:35625): ClientCnxn:sendSaslPacket:length=0
pool-1-thread-1-SendThread(localhost:35625): saslClient.evaluateChallenge(len=0)
pool-1-thread-1-EventThread: zookeeper state changed (SyncConnected)
NioProcessor-1: No server entry found for kerberos principal name zookeeper/localhost.localdomainEXAMPLE.COM
NioProcessor-1: No server entry found for kerberos principal name zookeeper/localhost.localdomainEXAMPLE.COM
NioProcessor-1: Server not found in Kerberos database (7)
NioProcessor-1: Server not found in Kerberos database (7)
```
The problem reproducible if the `localhost` and `localhost.localdomain` order exhanged:
```
[systestgsomogyi-build spark]$ cat /etc/hosts
127.0.0.1 localhost.localdomain localhost localhost4 localhost4.localdomain4
::1 localhost.localdomain localhost localhost6 localhost6.localdomain6
```
The main problem is that `ZkClient` connects to the canonical loopback address (which is not necessarily `localhost`).
### Why are the changes needed?
`KafkaDelegationTokenSuite` failed in some environments.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Existing unit tests on different platforms.
Closes#25803 from gaborgsomogyi/SPARK-29027.
Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
### What changes were proposed in this pull request?
Added new benchmarks for `make_date()` and `make_timestamp()` to detect performance issues, and figure out functions speed on foldable arguments.
- `make_date()` is benchmarked on fully foldable arguments.
- `make_timestamp()` is benchmarked on corner case `60.0`, foldable time fields and foldable date.
### Why are the changes needed?
To find out inputs where `make_date()` and `make_timestamp()` have performance problems. This should be useful in the future optimizations of the functions and users apps.
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
By running the benchmark and manually checking generated dates/timestamps.
Closes#25813 from MaxGekk/make_datetime-benchmark.
Authored-by: Maxim Gekk <max.gekk@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
Document CREATE DATABASE statement in SQL Reference Guide.
### Why are the changes needed?
Currently Spark lacks documentation on the supported SQL constructs causing
confusion among users who sometimes have to look at the code to understand the
usage. This is aimed at addressing this issue.
### Does this PR introduce any user-facing change?
Yes.
### Before:
There was no documentation for this.
### After:
### How was this patch tested?
Manual Review and Tested using jykyll build --serve
Closes#25595 from sharangk/createDbDoc.
Lead-authored-by: sharangk <sharan.gk@gmail.com>
Co-authored-by: Xiao Li <gatorsmile@gmail.com>
Signed-off-by: Xiao Li <gatorsmile@gmail.com>
### What changes were proposed in this pull request?
This pr refines the code of DELETE, including, 1, make `whereClause` to be optional, in which case DELETE will delete all of the data of a table; 2, add more test cases; 3, some other refines.
This is a following-up of SPARK-28351.
### Why are the changes needed?
An optional where clause in DELETE respects the SQL standard.
### Does this PR introduce any user-facing change?
Yes. But since this is a non-released feature, this change does not have any end-user affects.
### How was this patch tested?
New case is added.
Closes#25652 from xianyinxin/SPARK-28950.
Authored-by: xy_xin <xianyin.xxy@alibaba-inc.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
### What changes were proposed in this pull request?
`PipedRDD` will invoke `stdinWriterThread.interrupt()` at task completion, and `obj.wait` will get `InterruptedException`. However, there exists a possibility which the thread termination gets delayed because the thread starts from `obj.wait()` with that exception. To prevent test flakiness, we need to use `eventually`. Also, This PR fixes the typo in code comment and variable name.
### Why are the changes needed?
```
- stdin writer thread should be exited when task is finished *** FAILED ***
Some(Thread[stdin writer for List(cat),5,]) was not empty (PipedRDDSuite.scala:107)
```
- https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-maven-hadoop-2.7/6867/testReport/junit/org.apache.spark.rdd/PipedRDDSuite/stdin_writer_thread_should_be_exited_when_task_is_finished/
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Manual.
We can reproduce the same failure like Jenkins if we catch `InterruptedException` and sleep longer than the `eventually` timeout inside the test code. The following is the example to reproduce it.
```scala
val nums = sc.makeRDD(Array(1, 2, 3, 4), 1).map { x =>
try {
obj.synchronized {
obj.wait() // make the thread waits here.
}
} catch {
case ie: InterruptedException =>
Thread.sleep(15000)
throw ie
}
x
}
```
Closes#25808 from dongjoon-hyun/SPARK-29104.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
I fix the test "barrier task killed" which is flaky:
* Split interrupt/no interrupt test into separate sparkContext. Prevent them to influence each other.
* only check exception on partiton-0. partition-1 is hang on sleep which may throw other exception.
### Why are the changes needed?
Make test robust.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
N/A
Closes#25799 from WeichenXu123/oss_fix_barrier_test.
Authored-by: WeichenXu <weichen.xu@databricks.com>
Signed-off-by: WeichenXu <weichen.xu@databricks.com>
### What changes were proposed in this pull request?
Log levels in Executor.scala are changed from DEBUG to INFO.
### Why are the changes needed?
Logging level DEBUG is too low here. These messages are simple acknowledgement for successful loading and initialization of plugins. So its better to keep them in INFO level.
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
Manually tested.
Closes#25634 from iRakson/ExecutorPlugin.
Authored-by: iRakson <raksonrakesh@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
In the PR, I propose to create an instance of `TimestampFormatter` only once at the initialization, and reuse it inside of `nullSafeEval()` and `doGenCode()` in the case when the `fmt` parameter is foldable.
### Why are the changes needed?
The changes improve performance of the `date_format()` function.
Before:
```
format date: Best/Avg Time(ms) Rate(M/s) Per Row(ns) Relative
------------------------------------------------------------------------------------------------
format date wholestage off 7180 / 7181 1.4 718.0 1.0X
format date wholestage on 7051 / 7194 1.4 705.1 1.0X
```
After:
```
format date: Best/Avg Time(ms) Rate(M/s) Per Row(ns) Relative
------------------------------------------------------------------------------------------------
format date wholestage off 4787 / 4839 2.1 478.7 1.0X
format date wholestage on 4736 / 4802 2.1 473.6 1.0X
```
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
By existing test suites `DateExpressionsSuite` and `DateFunctionsSuite`.
Closes#25782 from MaxGekk/date_format-foldable.
Authored-by: Maxim Gekk <max.gekk@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This patch proposes to add new tests to test the username of HiveClient to prevent changing the semantic unintentionally. The owner of Hive table has been changed back-and-forth, principal -> username -> principal, and looks like the change is not intentional. (Please refer [SPARK-28996](https://issues.apache.org/jira/browse/SPARK-28996) for more details.) This patch intends to prevent this.
This patch also renames previous HiveClientSuite(s) to HivePartitionFilteringSuite(s) as it was commented as TODO, as well as previous tests are too narrowed to test only partition filtering.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Newly added UTs.
Closes#25696 from HeartSaVioR/SPARK-28996.
Authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
### What changes were proposed in this pull request?
Bucketizer support multi-column in the python side
### Why are the changes needed?
Bucketizer should support multi-column like the scala side.
### Does this PR introduce any user-facing change?
yes, this PR add new Python API
### How was this patch tested?
added testsuites
Closes#25801 from zhengruifeng/20542_py.
Authored-by: zhengruifeng <ruifengz@foxmail.com>
Signed-off-by: zhengruifeng <ruifengz@foxmail.com>
### What changes were proposed in this pull request?
When InSet generates Java switch-based code, if the input set is empty, we don't generate switch condition, but a simple expression that is default case of original switch.
### Why are the changes needed?
SPARK-26205 adds an optimization to InSet that generates Java switch condition for certain cases. When the given set is empty, it is possibly that codegen causes compilation error:
```
[info] - SPARK-29100: InSet with empty input set *** FAILED *** (58 milliseconds)
[info] Code generation of input[0, int, true] INSET () failed:
[info] org.codehaus.janino.InternalCompilerException: failed to compile: org.codehaus.janino.InternalCompilerException: Compiling "GeneratedClass" in "generated.java": Compiling "apply(java.lang.Object _i)"; apply(java.lang.Object _i): Operand stack inconsistent at offset 45: Previous size 0, now 1
[info] org.codehaus.janino.InternalCompilerException: failed to compile: org.codehaus.janino.InternalCompilerException: Compiling "GeneratedClass" in "generated.java": Compiling "apply(java.lang.Object _i)"; apply(java.lang.Object _i): Operand stack inconsistent at offset 45: Previous size 0, now 1
[info] at org.apache.spark.sql.catalyst.expressions.codegen.CodeGenerator$.org$apache$spark$sql$catalyst$expressions$codegen$CodeGenerator$$doCompile(CodeGenerator.scala:1308)
[info] at org.apache.spark.sql.catalyst.expressions.codegen.CodeGenerator$$anon$1.load(CodeGenerator.scala:1386)
[info] at org.apache.spark.sql.catalyst.expressions.codegen.CodeGenerator$$anon$1.load(CodeGenerator.scala:1383)
```
### Does this PR introduce any user-facing change?
Yes. Previously, when users have InSet against an empty set, generated code causes compilation error. This patch fixed it.
### How was this patch tested?
Unit test added.
Closes#25806 from viirya/SPARK-29100.
Authored-by: Liang-Chi Hsieh <viirya@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
### What changes were proposed in this pull request?
This pr proposes to define an individual method for each common subexpression in HashAggregateExec. In the current master, the common subexpr elimination code in HashAggregateExec is expanded in a single method; 4664a082c2/sql/core/src/main/scala/org/apache/spark/sql/execution/aggregate/HashAggregateExec.scala (L397)
The method size can be too big for JIT compilation, so I believe splitting it is beneficial for performance. For example, in a query `SELECT SUM(a + b), AVG(a + b + c) FROM VALUES (1, 1, 1) t(a, b, c)`,
the current master generates;
```
/* 098 */ private void agg_doConsume_0(InternalRow localtablescan_row_0, int agg_expr_0_0, int agg_expr_1_0, int agg_expr_2_0) throws java.io.IOException {
/* 099 */ // do aggregate
/* 100 */ // common sub-expressions
/* 101 */ int agg_value_6 = -1;
/* 102 */
/* 103 */ agg_value_6 = agg_expr_0_0 + agg_expr_1_0;
/* 104 */
/* 105 */ int agg_value_5 = -1;
/* 106 */
/* 107 */ agg_value_5 = agg_value_6 + agg_expr_2_0;
/* 108 */ boolean agg_isNull_4 = false;
/* 109 */ long agg_value_4 = -1L;
/* 110 */ if (!false) {
/* 111 */ agg_value_4 = (long) agg_value_5;
/* 112 */ }
/* 113 */ int agg_value_10 = -1;
/* 114 */
/* 115 */ agg_value_10 = agg_expr_0_0 + agg_expr_1_0;
/* 116 */ // evaluate aggregate functions and update aggregation buffers
/* 117 */ agg_doAggregate_sum_0(agg_value_10);
/* 118 */ agg_doAggregate_avg_0(agg_value_4, agg_isNull_4);
/* 119 */
/* 120 */ }
```
On the other hand, this pr generates;
```
/* 121 */ private void agg_doConsume_0(InternalRow localtablescan_row_0, int agg_expr_0_0, int agg_expr_1_0, int agg_expr_2_0) throws java.io.IOException {
/* 122 */ // do aggregate
/* 123 */ // common sub-expressions
/* 124 */ long agg_subExprValue_0 = agg_subExpr_0(agg_expr_2_0, agg_expr_0_0, agg_expr_1_0);
/* 125 */ int agg_subExprValue_1 = agg_subExpr_1(agg_expr_0_0, agg_expr_1_0);
/* 126 */ // evaluate aggregate functions and update aggregation buffers
/* 127 */ agg_doAggregate_sum_0(agg_subExprValue_1);
/* 128 */ agg_doAggregate_avg_0(agg_subExprValue_0);
/* 129 */
/* 130 */ }
```
I run some micro benchmarks for this pr;
```
(base) maropu~:$system_profiler SPHardwareDataType
Hardware:
Hardware Overview:
Processor Name: Intel Core i5
Processor Speed: 2 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Memory: 8 GB
(base) maropu~:$java -version
java version "1.8.0_181"
Java(TM) SE Runtime Environment (build 1.8.0_181-b13)
Java HotSpot(TM) 64-Bit Server VM (build 25.181-b13, mixed mode)
(base) maropu~:$ /bin/spark-shell --master=local[1] --conf spark.driver.memory=8g --conf spark.sql.shurtitions=1 -v
val numCols = 40
val colExprs = "id AS key" +: (0 until numCols).map { i => s"id AS _c$i" }
spark.range(3000000).selectExpr(colExprs: _*).createOrReplaceTempView("t")
val aggExprs = (2 until numCols).map { i =>
(0 until i).map(d => s"_c$d")
.mkString("AVG(", " + ", ")")
}
// Drops the time of a first run then pick that of a second run
timer { sql(s"SELECT ${aggExprs.mkString(", ")} FROM t").write.format("noop").save() }
// the master
maxCodeGen: 12957
Elapsed time: 36.309858661s
// this pr
maxCodeGen=4184
Elapsed time: 2.399490285s
```
### Why are the changes needed?
To avoid the too-long-function issue in JVMs.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Added tests in `WholeStageCodegenSuite`
Closes#25710 from maropu/SplitSubexpr.
Authored-by: Takeshi Yamamuro <yamamuro@apache.org>
Signed-off-by: Takeshi Yamamuro <yamamuro@apache.org>
### What changes were proposed in this pull request?
This patch adds new UT to ensure existing query (before Spark 3.0.0) with checkpoint doesn't break with default configuration of "includeHeaders" being introduced via SPARK-23539.
This patch also modifies existing test which checks type of columns to also check headers column as well.
### Why are the changes needed?
The patch adds missing tests which guarantees backward compatibility of the change of SPARK-23539.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
UT passed.
Closes#25792 from HeartSaVioR/SPARK-23539-FOLLOWUP.
Authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
…create table through spark-sql or beeline
## What changes were proposed in this pull request?
fix table owner use user instead of principal when create table through spark-sql
private val userName = conf.getUser will get ugi's userName which is principal info, and i copy the source code into HiveClientImpl, and use ugi.getShortUserName() instead of ugi.getUserName(). The owner display correctly.
## How was this patch tested?
1. create a table in kerberos cluster
2. use "desc formatted tbName" check owner
Please review http://spark.apache.org/contributing.html before opening a pull request.
Closes#23952 from hddong/SPARK-26929-fix-table-owner.
Lead-authored-by: hongdd <jn_hdd@163.com>
Co-authored-by: hongdongdong <hongdongdong@cmss.chinamobile.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
### What changes were proposed in this pull request?
The previous refactors of the shuffle writers using the shuffle writer plugin resulted in shuffle write metric updates - particularly write times - being lost in particular situations. This patch restores the lost metric updates.
### Why are the changes needed?
This fixes a regression. I'm pretty sure that without this, the Spark UI will lose shuffle write time information.
### Does this PR introduce any user-facing change?
No change from Spark 2.4. Without this, there would be a user-facing bug in Spark 3.0.
### How was this patch tested?
Existing unit tests.
Closes#25780 from mccheah/fix-write-metrics.
Authored-by: mcheah <mcheah@palantir.com>
Signed-off-by: Imran Rashid <irashid@cloudera.com>
### What changes were proposed in this pull request?
This pr proposes to print bytecode statistics (max class bytecode size, max method bytecode size, max constant pool size, and # of inner classes) for generated classes in debug prints, `debugCodegen`. Since these metrics are critical for codegen framework developments, I think its worth printing there. This pr intends to enable `debugCodegen` to print these metrics as following;
```
scala> sql("SELECT sum(v) FROM VALUES(1) t(v)").debugCodegen
Found 2 WholeStageCodegen subtrees.
== Subtree 1 / 2 (maxClassCodeSize:2693; maxMethodCodeSize:124; maxConstantPoolSize:130(0.20% used); numInnerClasses:0) ==
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
*(1) HashAggregate(keys=[], functions=[partial_sum(cast(v#0 as bigint))], output=[sum#5L])
+- *(1) LocalTableScan [v#0]
Generated code:
/* 001 */ public Object generate(Object[] references) {
/* 002 */ return new GeneratedIteratorForCodegenStage1(references);
/* 003 */ }
...
```
### Why are the changes needed?
For efficient developments
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
Manually tested
Closes#25766 from maropu/PrintBytecodeStats.
Authored-by: Takeshi Yamamuro <yamamuro@apache.org>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
### What changes were proposed in this pull request?
This is a follow-up of https://github.com/apache/spark/pull/25638 to switch `scala-library` from `test` dependency to `compile` dependency in `network-common` module.
### Why are the changes needed?
Previously, we added `scala-library` as a test dependency to resolve the followings, but it was insufficient to resolve. This PR aims to switch it to compile dependency.
```
$ java -version
openjdk version "11.0.3" 2019-04-16
OpenJDK Runtime Environment AdoptOpenJDK (build 11.0.3+7)
OpenJDK 64-Bit Server VM AdoptOpenJDK (build 11.0.3+7, mixed mode)
$ mvn clean install -pl common/network-common -DskipTests
...
[INFO] --- scala-maven-plugin:4.2.0:doc-jar (attach-scaladocs) spark-network-common_2.12 ---
error: fatal error: object scala in compiler mirror not found.
one error found
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
```
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Manually, run the following on JDK11.
```
$ mvn clean install -pl common/network-common -DskipTests
```
Closes#25800 from dongjoon-hyun/SPARK-28932-2.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
It's more clear to only do table lookup in `ResolveTables` rule (for v2 tables) and `ResolveRelations` rule (for v1 tables). `ResolveInsertInto` should only resolve the `InsertIntoStatement` with resolved relations.
### Why are the changes needed?
to make the code simpler
### Does this PR introduce any user-facing change?
no
### How was this patch tested?
existing tests
Closes#25774 from cloud-fan/simplify.
Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Currently, there is no migration section for PySpark, SparkCore and Structured Streaming.
It is difficult for users to know what to do when they upgrade.
This PR proposes to create create a "Migration Guide" tap at Spark documentation.
This page will contain migration guides for Spark SQL, PySpark, SparkR, MLlib, Structured Streaming and Core. Basically it is a refactoring.
There are some new information added, which I will leave a comment inlined for easier review.
1. **MLlib**
Merge [ml-guide.html#migration-guide](https://spark.apache.org/docs/latest/ml-guide.html#migration-guide) and [ml-migration-guides.html](https://spark.apache.org/docs/latest/ml-migration-guides.html)
```
'docs/ml-guide.md'
↓ Merge new/old migration guides
'docs/ml-migration-guide.md'
```
2. **PySpark**
Extract PySpark specific items from https://spark.apache.org/docs/latest/sql-migration-guide-upgrade.html
```
'docs/sql-migration-guide-upgrade.md'
↓ Extract PySpark specific items
'docs/pyspark-migration-guide.md'
```
3. **SparkR**
Move [sparkr.html#migration-guide](https://spark.apache.org/docs/latest/sparkr.html#migration-guide) into a separate file, and extract from [sql-migration-guide-upgrade.html](https://spark.apache.org/docs/latest/sql-migration-guide-upgrade.html)
```
'docs/sparkr.md' 'docs/sql-migration-guide-upgrade.md'
Move migration guide section ↘ ↙ Extract SparkR specific items
docs/sparkr-migration-guide.md
```
4. **Core**
Newly created at `'docs/core-migration-guide.md'`. I skimmed resolved JIRAs at 3.0.0 and found some items to note.
5. **Structured Streaming**
Newly created at `'docs/ss-migration-guide.md'`. I skimmed resolved JIRAs at 3.0.0 and found some items to note.
6. **SQL**
Merged [sql-migration-guide-upgrade.html](https://spark.apache.org/docs/latest/sql-migration-guide-upgrade.html) and [sql-migration-guide-hive-compatibility.html](https://spark.apache.org/docs/latest/sql-migration-guide-hive-compatibility.html)
```
'docs/sql-migration-guide-hive-compatibility.md' 'docs/sql-migration-guide-upgrade.md'
Move Hive compatibility section ↘ ↙ Left over after filtering PySpark and SparkR items
'docs/sql-migration-guide.md'
```
### Why are the changes needed?
In order for users in production to effectively migrate to higher versions, and detect behaviour or breaking changes before upgrading and/or migrating.
### Does this PR introduce any user-facing change?
Yes, this changes Spark's documentation at https://spark.apache.org/docs/latest/index.html.
### How was this patch tested?
Manually build the doc. This can be verified as below:
```bash
cd docs
SKIP_API=1 jekyll build
open _site/index.html
```
Closes#25757 from HyukjinKwon/migration-doc.
Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR add the `namespaces` keyword to `TableIdentifierParserSuite`.
### Why are the changes needed?
Improve the test.
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
N/A
Closes#25758 from highmoutain/3.0bugfix.
Authored-by: changchun.wang <251922566@qq.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This patch fixes the bug regarding NPE in SQLConf.get, which is only possible when SparkContext._dagScheduler is null due to stopping SparkContext. The logic doesn't seem to consider active SparkContext could be in progress of stopping.
Note that it can't be encountered easily as SparkContext.stop() blocks the main thread, but there're many cases which SQLConf.get is accessed concurrently while SparkContext.stop() is executing - users run another threads, or listener is accessing SQLConf.get after dagScheduler is set to null (this is the case what I encountered.)
### Why are the changes needed?
The bug brings NPE.
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
Previous patch #25753 was tested with new UT, and due to disruption with other tests in concurrent test run, the test is excluded in this patch.
Closes#25790 from HeartSaVioR/SPARK-29046-v2.
Authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
In the PR, I propose to fix comments of date-time expressions, and replace the `yyyy` pattern by `uuuu` when the implementation supposes the former one.
### Why are the changes needed?
To make comments consistent to implementations.
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
By running Scala Style checker.
Closes#25796 from MaxGekk/year-pattern-uuuu-followup.
Authored-by: Maxim Gekk <max.gekk@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
[SPARK-27122](https://github.com/apache/spark/pull/24088) fixes `ClassCastException` at `yarn` module by introducing `DelegatingServletContextHandler`. Initially, this was discovered with JDK9+, but the class path issues affected JDK8 environment, too. After [SPARK-28709](https://github.com/apache/spark/pull/25439), I also hit the similar issue at `streaming` module.
This PR aims to fix `streaming` module by adding `getContextPath` to `DelegatingServletContextHandler` and using it.
### Why are the changes needed?
Currently, when we test `streaming` module independently, it fails like the following.
```
$ build/mvn test -pl streaming
...
UISeleniumSuite:
- attaching and detaching a Streaming tab *** FAILED ***
java.lang.ClassCastException: org.sparkproject.jetty.servlet.ServletContextHandler cannot be cast to org.eclipse.jetty.servlet.ServletContextHandler
...
Tests: succeeded 337, failed 1, canceled 0, ignored 1, pending 0
*** 1 TEST FAILED ***
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
```
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Pass the Jenkins with the modified tests. And do the following manually.
Since you can observe this when you run `streaming` module test only (instead of running all), you need to install the changed `core` module and use it.
```
$ java -version
openjdk version "1.8.0_222"
OpenJDK Runtime Environment (AdoptOpenJDK)(build 1.8.0_222-b10)
OpenJDK 64-Bit Server VM (AdoptOpenJDK)(build 25.222-b10, mixed mode)
$ build/mvn install -DskipTests
$ build/mvn test -pl streaming
```
Closes#25791 from dongjoon-hyun/SPARK-29087.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
Replace use of `SerializationUtils.clone` with new `Utils.cloneProperties` method
Add benchmark + results showing dramatic speed up for effectively equivalent functionality.
### What changes were proposed in this pull request?
While I am not sure that SerializationUtils.clone is a performance issue in production, I am sure that it is overkill for the task it is doing (providing a distinct copy of a `Properties` object).
This PR provides a benchmark showing the dramatic improvement over the clone operation and replaces uses of `SerializationUtils.clone` on `Properties` with the more specialized `Utils.cloneProperties`.
### Does this PR introduce any user-facing change?
Strings are immutable so there is no reason to serialize and deserialize them, it just creates extra garbage.
The only functionality that would be changed is the unsupported insertion of non-String objects into the spark local properties.
### How was this patch tested?
1. Pass the Jenkins with the existing tests.
2. Since this is a performance improvement PR, manually run the benchmark.
Closes#25787 from databricks-david-lewis/SPARK-29081.
Authored-by: David Lewis <david.lewis@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
Make r file extension check case insensitive for spark-submit.
### Why are the changes needed?
spark-submit does not accept `.r` files as R scripts. Some codebases have r files that end with lowercase file extensions. It is inconvenient to use spark-submit with lowercase extension R files. The error is not very clear (https://github.com/apache/spark/blob/master/core/src/main/scala/org/apache/spark/deploy/SparkSubmitArguments.scala#L232).
```
$ ./bin/spark-submit examples/src/main/r/dataframe.r
Exception in thread "main" org.apache.spark.SparkException: Cannot load main class from JAR file:/Users/dongjoon/APACHE/spark-release/spark-2.4.4-bin-hadoop2.7/examples/src/main/r/dataframe.r
```
### Does this PR introduce any user-facing change?
Yes. spark-submit can now be used to run R scripts with `.r` file extension.
### How was this patch tested?
Manual.
```
$ mv examples/src/main/r/dataframe.R examples/src/main/r/dataframe.r
$ ./bin/spark-submit examples/src/main/r/dataframe.r
```
Closes#25778 from Loquats/r-case.
Authored-by: Andy Zhang <yue.zhang@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
During Spark History Server startup, there are two things happening simultaneously that call into `java.nio.file.FileSystems.getDefault()` and we sometime hit [JDK-8194653](https://bugs.openjdk.java.net/browse/JDK-8194653).
1) start jetty server
2) start ApplicationHistoryProvider (which reads files from HDFS)
We should do these two things sequentially instead of in parallel.
We introduce a start() method in ApplicationHistoryProvider (and its subclass FsHistoryProvider), and we do initialize inside the start() method instead of the constructor.
In HistoryServer, we explicitly call provider.start() after we call bind() which starts the Jetty server.
### Why are the changes needed?
It is a bug that occasionally starting Spark History Server results in process hang due to deadlock among threads.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
I stress tested this PR with a bash script to stop and start Spark History Server more than 1000 times, it worked fine. Previously I can only do the stop/start loop less than 10 times before I hit the deadlock issue.
Closes#25705 from shanyu/shanyu-29003.
Authored-by: Shanyu Zhao <shzhao@microsoft.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR enables GitHub Action on PRs.
### Why are the changes needed?
So far, we detect JDK11 compilation error after merging.
This PR aims to prevent JDK11 compilation error at PR stage.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Manual. See the GitHub Action on this PR.
Closes#25786 from dongjoon-hyun/SPARK-29079.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: DB Tsai <d_tsai@apple.com>
### What changes were proposed in this pull request?
This PR aims to add a new enforcer rule to ban duplicated pom dependency during build stage.
### Why are the changes needed?
This will help us by preventing the extra effort like the followings.
```
e63098b287 [SPARK-29007][MLLIB][FOLLOWUP] Remove duplicated dependency
39e044e3d8 [MINOR][BUILD] Remove duplicate test-jar:test spark-sql dependency from Hive module
d8fefab4d8 [HOTFIX][BUILD][TEST-MAVEN] Remove duplicate dependency
e9445b187e [SPARK-6866][Build] Remove duplicated dependency in launcher/pom.xml
```
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Manually.
If we have something like e63098b287, it will fail at building phase at PR like the following.
```
[WARNING] Rule 0: org.apache.maven.plugins.enforcer.BanDuplicatePomDependencyVersions failed with message:
Found 1 duplicate dependency declaration in this project:
- dependencies.dependency[org.apache.spark:spark-streaming_${scala.binary.version}:test-jar] ( 2 times )
...
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-enforcer-plugin:3.0.0-M2:enforce (enforce-no-duplicate-dependencies) on project spark-mllib_2.12: Some Enforcer rules have failed. Look above for specific messages explaining why the rule failed. -> [Help 1]
```
Closes#25784 from dongjoon-hyun/SPARK-29075.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
