Commit graph

8 commits

Author SHA1 Message Date
Phillip Henry 397b843890 [SPARK-34415][ML] Randomization in hyperparameter optimization
### What changes were proposed in this pull request?

Code in the PR generates random parameters for hyperparameter tuning. A discussion with Sean Owen can be found on the dev mailing list here:

http://apache-spark-developers-list.1001551.n3.nabble.com/Hyperparameter-Optimization-via-Randomization-td30629.html

All code is entirely my own work and I license the work to the project under the project’s open source license.

### Why are the changes needed?

Randomization can be a more effective techinique than a grid search since min/max points can fall between the grid and never be found. Randomisation is not so restricted although the probability of finding minima/maxima is dependent on the number of attempts.

Alice Zheng has an accessible description on how this technique works at https://www.oreilly.com/library/view/evaluating-machine-learning/9781492048756/ch04.html

Although there are Python libraries with more sophisticated techniques, not every Spark developer is using Python.

### Does this PR introduce _any_ user-facing change?

A new class (`ParamRandomBuilder.scala`) and its tests have been created but there is no change to existing code. This class offers an alternative to `ParamGridBuilder` and can be dropped into the code wherever `ParamGridBuilder` appears. Indeed, it extends `ParamGridBuilder` and is completely compatible with  its interface. It merely adds one method that provides a range over which a hyperparameter will be randomly defined.

### How was this patch tested?

Tests `ParamRandomBuilderSuite.scala` and `RandomRangesSuite.scala` were added.

`ParamRandomBuilderSuite` is the analogue of the already existing `ParamGridBuilderSuite` which tests the user-facing interface.

`RandomRangesSuite` uses ScalaCheck to test the random ranges over which hyperparameters are distributed.

Closes #31535 from PhillHenry/ParamRandomBuilder.

Authored-by: Phillip Henry <PhillHenry@gmail.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2021-02-27 08:34:39 -06:00
Huaxin Gao f3548837c6 [SPARK-34080][ML][PYTHON] Add UnivariateFeatureSelector
### What changes were proposed in this pull request?
Add UnivariateFeatureSelector

### Why are the changes needed?
Have one UnivariateFeatureSelector, so we don't need to have three Feature Selectors.

### Does this PR introduce _any_ user-facing change?
Yes
```
selector = UnivariateFeatureSelector(featureCols=["x", "y", "z"], labelCol=["target"], featureType="categorical", labelType="continuous", selectorType="numTopFeatures",  numTopFeatures=100)
```

Or

numTopFeatures
```
selector = UnivariateFeatureSelector(featureCols=["x", "y", "z"], labelCol=["target"], scoreFunction="f_classif", selectorType="numTopFeatures",  numTopFeatures=100)
```

### How was this patch tested?
Add Unit test

Closes #31160 from huaxingao/UnivariateSelector.

Authored-by: Huaxin Gao <huaxing@us.ibm.com>
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
2021-01-16 11:09:23 +08:00
HyukjinKwon aa388cf3d0 [SPARK-34041][PYTHON][DOCS] Miscellaneous cleanup for new PySpark documentation
### What changes were proposed in this pull request?

This PR proposes to:
- Add a link of quick start in PySpark docs into "Programming Guides" in Spark main docs
- `ML` / `MLlib` -> `MLlib (DataFrame-based)` / `MLlib (RDD-based)` in API reference page
- Mention other user guides as well because the guide such as [ML](http://spark.apache.org/docs/latest/ml-guide.html) and [SQL](http://spark.apache.org/docs/latest/sql-programming-guide.html).
- Mention other migration guides as well because PySpark can get affected by it.

### Why are the changes needed?

For better documentation.

### Does this PR introduce _any_ user-facing change?

It fixes user-facing docs. However, it's not released out yet.

### How was this patch tested?

Manually tested by running:

```bash
cd docs
SKIP_SCALADOC=1 SKIP_RDOC=1 SKIP_SQLDOC=1 jekyll serve --watch
```

Closes #31082 from HyukjinKwon/SPARK-34041.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-01-08 09:28:31 +09:00
Weichen Xu 596fbc1d29 [SPARK-33556][ML] Add array_to_vector function for dataframe column
### What changes were proposed in this pull request?

Add array_to_vector function for dataframe column

### Why are the changes needed?
Utility function for array to vector conversion.

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
scala unit test & doctest.

Closes #30498 from WeichenXu123/array_to_vec.

Lead-authored-by: Weichen Xu <weichen.xu@databricks.com>
Co-authored-by: Hyukjin Kwon <gurwls223@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-12-01 09:52:19 +09:00
HyukjinKwon 9818f079aa [SPARK-33243][PYTHON][BUILD] Add numpydoc into documentation dependency
### What changes were proposed in this pull request?

This PR proposes to initiate the migration to NumPy documentation style (from reST style) in PySpark docstrings.
This PR also adds one migration example of `SparkContext`.

- **Before:**
    ...
    ![Screen Shot 2020-10-26 at 7 02 05 PM](https://user-images.githubusercontent.com/6477701/97161090-a8ea0200-17c0-11eb-8204-0e70d18fc571.png)
    ...
    ![Screen Shot 2020-10-26 at 7 02 09 PM](https://user-images.githubusercontent.com/6477701/97161100-aab3c580-17c0-11eb-92ad-f5ad4441ce16.png)
    ...

- **After:**

    ...
    ![Screen Shot 2020-10-26 at 7 24 08 PM](https://user-images.githubusercontent.com/6477701/97161219-d636b000-17c0-11eb-80ab-d17a570ecb4b.png)
    ...

See also https://numpydoc.readthedocs.io/en/latest/format.html

### Why are the changes needed?

There are many reasons for switching to NumPy documentation style.

1. Arguably reST style doesn't fit well when the docstring grows large because it provides (arguably) less structures and syntax.

2. NumPy documentation style provides a better human readable docstring format. For example, notebook users often just do `help(...)` by `pydoc`.

3. NumPy documentation style is pretty commonly used in data science libraries, for example, pandas, numpy, Dask, Koalas,
matplotlib, ... Using NumPy documentation style can give users a consistent documentation style.

### Does this PR introduce _any_ user-facing change?

The dependency itself doesn't change anything user-facing.
The documentation change in `SparkContext` does, as shown above.

### How was this patch tested?

Manually tested via running `cd python` and `make clean html`.

Closes #30149 from HyukjinKwon/SPARK-33243.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-10-27 14:03:57 +09:00
Sean Owen 891c5e661a [MINOR][DOCS] Add KMeansSummary and InheritableThread to documentation
### What changes were proposed in this pull request?

The class `KMeansSummary` in pyspark is not included in `clustering.py`'s `__all__` declaration. It isn't included in the docs as a result.

`InheritableThread` and `KMeansSummary` should be into corresponding RST files for documentation.

### Why are the changes needed?

It seems like an oversight to not include this as all similar "summary" classes are.
`InheritableThread` should also be documented.

### Does this PR introduce _any_ user-facing change?

I don't believe there are functional changes. It should make this public class appear in docs.

### How was this patch tested?

Existing tests / N/A.

Closes #29470 from srowen/KMeansSummary.

Lead-authored-by: Sean Owen <srowen@gmail.com>
Co-authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-08-19 14:30:07 +09:00
Huaxin Gao 40e6a5bbb0 [SPARK-32449][ML][PYSPARK] Add summary to MultilayerPerceptronClassificationModel
### What changes were proposed in this pull request?
Add training summary to MultilayerPerceptronClassificationModel...

### Why are the changes needed?
so that user can get the training process status, such as loss value of each iteration and total iteration number.

### Does this PR introduce _any_ user-facing change?
Yes
MultilayerPerceptronClassificationModel.summary
MultilayerPerceptronClassificationModel.evaluate

### How was this patch tested?
new tests

Closes #29250 from huaxingao/mlp_summary.

Authored-by: Huaxin Gao <huaxing@us.ibm.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2020-07-29 09:58:25 -05:00
HyukjinKwon 6ab29b37cf [SPARK-32179][SPARK-32188][PYTHON][DOCS] Replace and redesign the documentation base
### What changes were proposed in this pull request?

This PR proposes to redesign the PySpark documentation.

I made a demo site to make it easier to review: https://hyukjin-spark.readthedocs.io/en/stable/reference/index.html.

Here is the initial draft for the final PySpark docs shape: https://hyukjin-spark.readthedocs.io/en/latest/index.html.

In more details, this PR proposes:
1. Use [pydata_sphinx_theme](https://github.com/pandas-dev/pydata-sphinx-theme) theme - [pandas](https://pandas.pydata.org/docs/) and [Koalas](https://koalas.readthedocs.io/en/latest/) use this theme. The CSS overwrite is ported from Koalas. The colours in the CSS were actually chosen by designers to use in Spark.
2. Use the Sphinx option to separate `source` and `build` directories as the documentation pages will likely grow.
3. Port current API documentation into the new style. It mimics Koalas and pandas to use the theme most effectively.

    One disadvantage of this approach is that you should list up APIs or classes; however, I think this isn't a big issue in PySpark since we're being conservative on adding APIs. I also intentionally listed classes only instead of functions in ML and MLlib to make it relatively easier to manage.

### Why are the changes needed?

Often I hear the complaints, from the users, that current PySpark documentation is pretty messy to read - https://spark.apache.org/docs/latest/api/python/index.html compared other projects such as [pandas](https://pandas.pydata.org/docs/) and [Koalas](https://koalas.readthedocs.io/en/latest/).

It would be nicer if we can make it more organised instead of just listing all classes, methods and attributes to make it easier to navigate.

Also, the documentation has been there from almost the very first version of PySpark. Maybe it's time to update it.

### Does this PR introduce _any_ user-facing change?

Yes, PySpark API documentation will be redesigned.

### How was this patch tested?

Manually tested, and the demo site was made to show.

Closes #29188 from HyukjinKwon/SPARK-32179.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-07-27 17:49:21 +09:00