Commit graph

1318 commits

Author SHA1 Message Date
sachin aggarwal 51d41e4b1a [SPARK-11552][DOCS][Replaced example code in ml-decision-tree.md using include_example]
I have tested it on my local, it is working fine, please review

Author: sachin aggarwal <different.sachin@gmail.com>

Closes #9539 from agsachin/SPARK-11552-real.
2015-11-09 14:25:42 -08:00
Bharat Lal 860ea0d386 [SPARK-11581][DOCS] Example mllib code in documentation incorrectly computes MSE
Author: Bharat Lal <bharat.iisc@gmail.com>

Closes #9560 from bharatl/SPARK-11581.
2015-11-09 11:33:01 -08:00
chriskang90 874cd66d4b [DOCS] Fix typo for Python section on unifying Kafka streams
1) kafkaStreams is a list.  The list should be unpacked when passing it into the streaming context union method, which accepts a variable number of streams.
2) print() should be pprint() for pyspark.

This contribution is my original work, and I license the work to the project under the project's open source license.

Author: chriskang90 <jckang@uchicago.edu>

Closes #9545 from c-kang/streaming_python_typo.
2015-11-09 19:39:22 +01:00
Yanbo Liang d50a66cc04 [SPARK-10689][ML][DOC] User guide and example code for AFTSurvivalRegression
Add user guide and example code for ```AFTSurvivalRegression```.

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #9491 from yanboliang/spark-10689.
2015-11-09 08:57:29 -08:00
Rohit Agarwal b541b31630 [DOC][MINOR][SQL] Fix internal link
It doesn't show up as a hyperlink currently. It will show up as a hyperlink after this change.

Author: Rohit Agarwal <mindprince@gmail.com>

Closes #9544 from mindprince/patch-2.
2015-11-09 13:28:00 +01:00
xin Wu 26739059bc [SPARK-10046][SQL] Hive warehouse dir not set in current directory when not …
Doc change to align with HiveConf default in terms of where to create `warehouse` directory.

Author: xin Wu <xinwu@us.ibm.com>

Closes #9365 from xwu0226/spark-10046-commit.
2015-11-08 12:28:19 -08:00
Rohit Agarwal 5c4e6d7ec9 [DOC][SQL] Remove redundant out-of-place python snippet
This snippet seems to be mistakenly introduced at two places in #5348.

Author: Rohit Agarwal <mindprince@gmail.com>

Closes #9540 from mindprince/patch-1.
2015-11-08 14:24:26 +00:00
Sean Owen d981902101 [SPARK-11476][DOCS] Incorrect function referred to in MLib Random data generation documentation
Fix Python example to use normalRDD as advertised

Author: Sean Owen <sowen@cloudera.com>

Closes #9529 from srowen/SPARK-11476.
2015-11-08 11:15:58 +00:00
Yanbo Liang 72634f27e3 [MINOR][ML][DOC] Rename weights to coefficients in user guide
We should use ```coefficients``` rather than ```weights``` in user guide that freshman can get the right conventional name at the outset. mengxr vectorijk

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #9493 from yanboliang/docs-coefficients.
2015-11-05 08:59:06 -08:00
Josh Rosen ce5e6a2849 [SPARK-11491] Update build to use Scala 2.10.5
Spark should build against Scala 2.10.5, since that includes a fix for Scaladoc that will fix doc snapshot publishing: https://issues.scala-lang.org/browse/SI-8479

Author: Josh Rosen <joshrosen@databricks.com>

Closes #9450 from JoshRosen/upgrade-to-scala-2.10.5.
2015-11-04 16:58:38 -08:00
Wenchen Fan e0fc9c7e59 [SPARK-11197][SQL] add doc for run SQL on files directly
Author: Wenchen Fan <wenchen@databricks.com>

Closes #9467 from cloud-fan/doc.
2015-11-04 09:33:30 -08:00
Xusen Yin 9b214cea89 [SPARK-11443] Reserve space lines
The trim_codeblock(lines) function in include_example.rb removes some blank lines in the code.

Author: Xusen Yin <yinxusen@gmail.com>

Closes #9400 from yinxusen/SPARK-11443.
2015-11-04 08:36:55 -08:00
Pravin Gadakh 820064e613 [SPARK-11380][DOCS] Replace example code in mllib-frequent-pattern-mining.md using include_example
Author: Pravin Gadakh <pravingadakh177@gmail.com>
Author: Pravin Gadakh <prgadakh@in.ibm.com>

Closes #9340 from pravingadakh/SPARK-11380.
2015-11-04 08:32:08 -08:00
lewuathe d648a4ad54 [DOC] Missing link to R DataFrame API doc
Author: lewuathe <lewuathe@me.com>
Author: Lewuathe <lewuathe@me.com>

Closes #9394 from Lewuathe/missing-link-to-R-dataframe.
2015-11-03 16:38:22 -08:00
felixcheung a9676cc710 [SPARK-11407][SPARKR] Add doc for running from RStudio
![image](https://cloud.githubusercontent.com/assets/8969467/10871746/612ba44a-80a4-11e5-99a0-40b9931dee52.png)
(This is without css, but you get the idea)
shivaram

Author: felixcheung <felixcheung_m@hotmail.com>

Closes #9401 from felixcheung/rstudioprogrammingguide.
2015-11-03 11:53:10 -08:00
Rishabh Bhardwaj 2804674a7a [SPARK-11383][DOCS] Replaced example code in mllib-naive-bayes.md/mllib-isotonic-regression.md using include_example
I have made the required changes in mllib-naive-bayes.md/mllib-isotonic-regression.md and also verified them.
Kindle Review it.

Author: Rishabh Bhardwaj <rbnext29@gmail.com>

Closes #9353 from rishabhbhardwaj/SPARK-11383.
2015-11-02 14:03:50 -08:00
Sean Owen 643c49c75e [SPARK-11305][DOCS] Remove Third-Party Hadoop Distributions Doc Page
Remove Hadoop third party distro page, and move Hadoop cluster config info to configuration page

CC pwendell

Author: Sean Owen <sowen@cloudera.com>

Closes #9298 from srowen/SPARK-11305.
2015-11-01 12:25:49 +00:00
felixcheung bb5a2af034 [SPARK-11340][SPARKR] Support setting driver properties when starting Spark from R programmatically or from RStudio
Mapping spark.driver.memory from sparkEnvir to spark-submit commandline arguments.

shivaram suggested that we possibly add other spark.driver.* properties - do we want to add all of those? I thought those could be set in SparkConf?
sun-rui

Author: felixcheung <felixcheung_m@hotmail.com>

Closes #9290 from felixcheung/rdrivermem.
2015-10-30 13:51:32 -07:00
tedyu f304f9c9a1 [SPARK-11318] Include hive profile in make-distribution.sh command
Author: tedyu <yuzhihong@gmail.com>

Closes #9281 from tedyu/master.
2015-10-29 15:02:13 +01:00
Mageswaran.D fd9e345cee Typo in mllib-evaluation-metrics.md
Recall by threshold snippet was using "precisionByThreshold"

Author: Mageswaran.D <mageswaran1989@gmail.com>

Closes #9333 from Mageswaran1989/Typo_in_mllib-evaluation-metrics.md.
2015-10-28 08:46:30 -07:00
Xusen Yin d77d198fcc [SPARK-11297] Add new code tags
mengxr https://issues.apache.org/jira/browse/SPARK-11297

Add new code tags to hold the same look and feel with previous documents.

Author: Xusen Yin <yinxusen@gmail.com>

Closes #9265 from yinxusen/SPARK-11297.
2015-10-26 23:53:41 -07:00
Xusen Yin 943d4fa204 [SPARK-11289][DOC] Substitute code examples in ML features extractors with include_example
mengxr https://issues.apache.org/jira/browse/SPARK-11289

I make some changes in ML feature extractors. I.e. TF-IDF, Word2Vec, and CountVectorizer. I add new example code in spark/examples, hope it is the right place to add those examples.

Author: Xusen Yin <yinxusen@gmail.com>

Closes #9266 from yinxusen/SPARK-11289.
2015-10-26 21:17:53 -07:00
Josh Rosen b67dc6a434 [SPARK-11299][DOC] Fix link to Scala DataFrame Functions reference
The SQL programming guide's link to the DataFrame functions reference points to the wrong location; this patch fixes that.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #9269 from JoshRosen/SPARK-11299.
2015-10-25 10:31:44 +01:00
Sun Rui 2462dbcce8 [SPARK-10971][SPARKR] RRunner should allow setting path to Rscript.
Add a new spark conf option "spark.sparkr.r.driver.command" to specify the executable for an R script in client modes.

The existing spark conf option "spark.sparkr.r.command" is used to specify the executable for an R script in cluster modes for both driver and workers. See also [launch R worker script](https://github.com/apache/spark/blob/master/core/src/main/scala/org/apache/spark/api/r/RRDD.scala#L395).

BTW, [envrionment variable "SPARKR_DRIVER_R"](https://github.com/apache/spark/blob/master/launcher/src/main/java/org/apache/spark/launcher/SparkSubmitCommandBuilder.java#L275) is used to locate R shell on the local host.

For your information, PYSPARK has two environment variables serving simliar purpose:
PYSPARK_PYTHON	      Python binary executable to use for PySpark in both driver and workers (default is `python`).
PYSPARK_DRIVER_PYTHON	Python binary executable to use for PySpark in driver only (default is PYSPARK_PYTHON).
pySpark use the code [here](https://github.com/apache/spark/blob/master/core/src/main/scala/org/apache/spark/deploy/PythonRunner.scala#L41) to determine the python executable for a python script.

Author: Sun Rui <rui.sun@intel.com>

Closes #9179 from sun-rui/SPARK-10971.
2015-10-23 21:38:04 -07:00
Xusen Yin 03ccb22080 [SPARK-10382] Make example code in user guide testable
A POC code for making example code in user guide testable.

mengxr We still need to talk about the labels in code.

Author: Xusen Yin <yinxusen@gmail.com>

Closes #9109 from yinxusen/SPARK-10382.
2015-10-23 08:31:01 -07:00
Rohan Bhanderi 16dc9f344c Fix typo "Received" to "Receiver" in streaming-kafka-integration.md
Removed typo on line 8 in markdown : "Received" -> "Receiver"

Author: Rohan Bhanderi <rohan.bhanderi@sjsu.edu>

Closes #9242 from RohanBhanderi/patch-1.
2015-10-23 01:10:46 -07:00
Josh Rosen f6d06adf05 [SPARK-10708] Consolidate sort shuffle implementations
There's a lot of duplication between SortShuffleManager and UnsafeShuffleManager. Given that these now provide the same set of functionality, now that UnsafeShuffleManager supports large records, I think that we should replace SortShuffleManager's serialized shuffle implementation with UnsafeShuffleManager's and should merge the two managers together.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #8829 from JoshRosen/consolidate-sort-shuffle-implementations.
2015-10-22 09:46:30 -07:00
vundela 2f6dd634c1 [SPARK-11105] [YARN] Distribute log4j.properties to executors
Currently log4j.properties file is not uploaded to executor's which is leading them to use the default values. This fix will make sure that file is always uploaded to distributed cache so that executor will use the latest settings.

If user specifies log configurations through --files then executors will be picking configs from --files instead of $SPARK_CONF_DIR/log4j.properties

Author: vundela <vsr@cloudera.com>
Author: Srinivasa Reddy Vundela <vsr@cloudera.com>

Closes #9118 from vundela/master.
2015-10-20 11:12:28 -07:00
Lukasz Piepiora a112d69fdc [SPARK-11174] [DOCS] Fix typo in the GraphX programming guide
This patch fixes a small typo in the GraphX programming guide

Author: Lukasz Piepiora <lpiepiora@gmail.com>

Closes #9160 from lpiepiora/11174-fix-typo-in-graphx-programming-guide.
2015-10-18 14:25:57 +01:00
Britta Weber 723aa75a9d fix typo bellow -> below
Author: Britta Weber <britta.weber@elasticsearch.com>

Closes #9136 from brwe/typo-bellow.
2015-10-15 14:47:11 -07:00
Nick Pritchard b591de7c07 [SPARK-11039][Documentation][Web UI] Document additional ui configurations
Add documentation for configuration:
- spark.sql.ui.retainedExecutions
- spark.streaming.ui.retainedBatches

Author: Nick Pritchard <nicholas.pritchard@falkonry.com>

Closes #9052 from pnpritchard/SPARK-11039.
2015-10-15 12:45:37 -07:00
Andrew Or b3ffac5178 [SPARK-10983] Unified memory manager
This patch unifies the memory management of the storage and execution regions such that either side can borrow memory from each other. When memory pressure arises, storage will be evicted in favor of execution. To avoid regressions in cases where storage is crucial, we dynamically allocate a fraction of space for storage that execution cannot evict. Several configurations are introduced:

- **spark.memory.fraction (default 0.75)**: ​fraction of the heap space used for execution and storage. The lower this is, the more frequently spills and cached data eviction occur. The purpose of this config is to set aside memory for internal metadata, user data structures, and imprecise size estimation in the case of sparse, unusually large records.

- **spark.memory.storageFraction (default 0.5)**: size of the storage region within the space set aside by `s​park.memory.fraction`. ​Cached data may only be evicted if total storage exceeds this region.

- **spark.memory.useLegacyMode (default false)**: whether to use the memory management that existed in Spark 1.5 and before. This is mainly for backward compatibility.

For a detailed description of the design, see [SPARK-10000](https://issues.apache.org/jira/browse/SPARK-10000). This patch builds on top of the `MemoryManager` interface introduced in #9000.

Author: Andrew Or <andrew@databricks.com>

Closes #9084 from andrewor14/unified-memory-manager.
2015-10-13 13:49:59 -07:00
jerryshao f97e9323b5 [SPARK-10739] [YARN] Add application attempt window for Spark on Yarn
Add application attempt window for Spark on Yarn to ignore old out of window failures, this is useful for long running applications to recover from failures.

Author: jerryshao <sshao@hortonworks.com>

Closes #8857 from jerryshao/SPARK-10739 and squashes the following commits:

36eabdc [jerryshao] change the doc
7f9b77d [jerryshao] Style change
1c9afd0 [jerryshao] Address the comments
caca695 [jerryshao] Add application attempt window for Spark on Yarn
2015-10-12 18:18:19 -07:00
Kay Ousterhout 091c2c3ecd [SPARK-11056] Improve documentation of SBT build.
This commit improves the documentation around building Spark to
(1) recommend using SBT interactive mode to avoid the overhead of
launching SBT and (2) refer to the wiki page that documents using
SPARK_PREPEND_CLASSES to avoid creating the assembly jar for each
compile.

cc srowen

Author: Kay Ousterhout <kayousterhout@gmail.com>

Closes #9068 from kayousterhout/SPARK-11056.
2015-10-12 14:23:29 -07:00
Jean-Baptiste Onofré 60150cf00a [SPARK-10883] Add a note about how to build Spark sub-modules (reactor)
Author: Jean-Baptiste Onofré <jbonofre@apache.org>

Closes #8993 from jbonofre/SPARK-10883-2.
2015-10-08 11:38:39 +01:00
admackin cd28139c9b Akka framesize units should be specified
1.4 docs noted that the units were MB - i have assumed this is still the case

Author: admackin <admackin@users.noreply.github.com>

Closes #9025 from admackin/master.
2015-10-08 00:01:23 -07:00
Xin Ren 27cdde2ff8 [SPARK-10669] [DOCS] Link to each language's API in codetabs in ML docs: spark.mllib
In the Markdown docs for the spark.mllib Programming Guide, we have code examples with codetabs for each language. We should link to each language's API docs within the corresponding codetab, but we are inconsistent about this. For an example of what we want to do, see the "ChiSqSelector" section in 64743870f2/docs/mllib-feature-extraction.md
This JIRA is just for spark.mllib, not spark.ml.

Please let me know if more work is needed, thanks a lot.

Author: Xin Ren <iamshrek@126.com>

Closes #8977 from keypointt/SPARK-10669.
2015-10-07 15:00:19 +01:00
Sean Owen 82bbc2a5f2 [SPARK-9570] [DOCS] Consistent recommendation for submitting spark apps to YARN, -master yarn --deploy-mode x vs -master yarn-x'.
Recommend `--master yarn --deploy-mode {cluster,client}` consistently in docs.
Follow-on to https://github.com/apache/spark/pull/8385
CC nssalian

Author: Sean Owen <sowen@cloudera.com>

Closes #8968 from srowen/SPARK-9570.
2015-10-04 09:31:52 +01:00
Yuhao Yang 9b9fe5f7bf [SPARK-10670] [ML] [Doc] add api reference for ml doc
jira: https://issues.apache.org/jira/browse/SPARK-10670
In the Markdown docs for the spark.ml Programming Guide, we have code examples with codetabs for each language. We should link to each language's API docs within the corresponding codetab, but we are inconsistent about this. For an example of what we want to do, see the "Word2Vec" section in 64743870f2/docs/ml-features.md
This JIRA is just for spark.ml, not spark.mllib

Author: Yuhao Yang <hhbyyh@gmail.com>

Closes #8901 from hhbyyh/docAPI.
2015-09-28 22:40:02 -07:00
David Martin b58249930d Fix two mistakes in programming-guide page
seperate -> separate
sees -> see

Author: David Martin <dmartinpro@users.noreply.github.com>

Closes #8928 from dmartinpro/patch-1.
2015-09-28 10:41:39 +01:00
Bin Wang fb4c7be747 add doc for spark.streaming.stopGracefullyOnShutdown
Author: Bin Wang <wbin00@gmail.com>

Closes #8898 from wb14123/doc.
2015-09-27 21:26:54 +01:00
Matt Hagen 558e9c7e60 [SPARK-10663] Removed unnecessary invocation of DataFrame.toDF method.
The Scala example under the "Example: Pipeline" heading in this
document initializes the "test" variable to a DataFrame. Because test
is already a DF, there is not need to call test.toDF as the example
does in a subsequent line: model.transform(test.toDF). So, I removed
the extraneous toDF invocation.

Author: Matt Hagen <anonz3000@gmail.com>

Closes #8875 from hagenhaus/SPARK-10663.
2015-09-22 21:14:25 -07:00
Akash Mishra 0bd0e5bed2 [SPARK-10695] [DOCUMENTATION] [MESOS] Fixing incorrect value informati…
…on for spark.mesos.constraints parameter.

Author: Akash Mishra <akash.mishra20@gmail.com>

Closes #8816 from SleepyThread/constraint-fix.
2015-09-22 00:14:27 -07:00
Marcelo Vanzin 97a99dde6e [SPARK-10676] [DOCS] Add documentation for SASL encryption options.
Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #8803 from vanzin/SPARK-10676.
2015-09-21 13:15:44 -07:00
Jacek Laskowski ca9fe540fe [SPARK-10662] [DOCS] Code snippets are not properly formatted in tables
* Backticks are processed properly in Spark Properties table
* Removed unnecessary spaces
* See http://people.apache.org/~pwendell/spark-nightly/spark-master-docs/latest/running-on-yarn.html

Author: Jacek Laskowski <jacek.laskowski@deepsense.io>

Closes #8795 from jaceklaskowski/docs-yarn-formatting.
2015-09-21 19:46:39 +01:00
Josh Rosen 2117eea71e [SPARK-10710] Remove ability to disable spilling in core and SQL
It does not make much sense to set `spark.shuffle.spill` or `spark.sql.planner.externalSort` to false: I believe that these configurations were initially added as "escape hatches" to guard against bugs in the external operators, but these operators are now mature and well-tested. In addition, these configurations are not handled in a consistent way anymore: SQL's Tungsten codepath ignores these configurations and will continue to use spilling operators. Similarly, Spark Core's `tungsten-sort` shuffle manager does not respect `spark.shuffle.spill=false`.

This pull request removes these configurations, adds warnings at the appropriate places, and deletes a large amount of code which was only used in code paths that did not support spilling.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #8831 from JoshRosen/remove-ability-to-disable-spilling.
2015-09-19 21:40:21 -07:00
Alexis Seigneurin d83b6aae8b Fixed links to the API
Submitting this change on the master branch as requested in https://github.com/apache/spark/pull/8819#issuecomment-141505941

Author: Alexis Seigneurin <alexis.seigneurin@gmail.com>

Closes #8838 from aseigneurin/patch-2.
2015-09-19 12:01:22 +01:00
Kousuke Saruta d507f9c0b7 [SPARK-10584] [SQL] [DOC] Documentation about the compatible Hive version is wrong.
In Spark 1.5.0, Spark SQL is compatible with Hive 0.12.0 through 1.2.1 but the documentation is wrong.

/CC yhuai

Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp>

Closes #8776 from sarutak/SPARK-10584-2.
2015-09-19 01:59:36 -07:00
Reynold Xin 348d7c9a93 [SPARK-9808] Remove hash shuffle file consolidation.
Author: Reynold Xin <rxin@databricks.com>

Closes #8812 from rxin/SPARK-9808-1.
2015-09-18 13:48:41 -07:00
Reynold Xin 74d8f7dda8 Added <code> tag to documentation. 2015-09-17 22:46:13 -07:00