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27500 commits

Author SHA1 Message Date
yi.wu 83d0967dcc [SPARK-31784][CORE][TEST] Fix test BarrierTaskContextSuite."share messages with allGather() call"
### What changes were proposed in this pull request?

Change from `messages.toList.iterator` to `Iterator.single(messages.toList)`.

### Why are the changes needed?

In this test, the expected result of `rdd2.collect().head` should actually be `List("0", "1", "2", "3")` but is `"0"` now.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Updated test.

Thanks WeichenXu123 reported this problem.

Closes #28596 from Ngone51/fix_allgather_test.

Authored-by: yi.wu <yi.wu@databricks.com>
Signed-off-by: Xingbo Jiang <xingbo.jiang@databricks.com>
2020-05-21 23:34:11 -07:00
Max Gekk 60118a2426 [SPARK-31785][SQL][TESTS] Add a helper function to test all parquet readers
### What changes were proposed in this pull request?
Add `withAllParquetReaders` to `ParquetTest`. The function allow to run a block of code for all available Parquet readers.

### Why are the changes needed?
1. It simplifies tests
2. Allow to test all parquet readers that could be available in projects based on Apache Spark.

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
By running affected test suites.

Closes #28598 from MaxGekk/add-withAllParquetReaders.

Authored-by: Max Gekk <max.gekk@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-05-22 09:53:35 +09:00
Gengliang Wang db5e5fce68 Revert "[SPARK-31765][WEBUI] Upgrade HtmlUnit >= 2.37.0"
This reverts commit 92877c4ef2.

Closes #28602 from gengliangwang/revertSPARK-31765.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Gengliang Wang <gengliang.wang@databricks.com>
2020-05-21 16:00:58 -07:00
Kousuke Saruta 92877c4ef2 [SPARK-31765][WEBUI] Upgrade HtmlUnit >= 2.37.0
### What changes were proposed in this pull request?

This PR upgrades HtmlUnit.
Selenium and Jetty also upgraded because of dependency.
### Why are the changes needed?

Recently, a security issue which affects HtmlUnit is reported.
https://nvd.nist.gov/vuln/detail/CVE-2020-5529
According to the report, arbitrary code can be run by malicious users.
HtmlUnit is used for test so the impact might not be large but it's better to upgrade it just in case.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Existing testcases.

Closes #28585 from sarutak/upgrade-htmlunit.

Authored-by: Kousuke Saruta <sarutak@oss.nttdata.com>
Signed-off-by: Gengliang Wang <gengliang.wang@databricks.com>
2020-05-21 11:43:25 -07:00
Thomas Graves b64688ebba [SPARK-29303][WEB UI] Add UI support for stage level scheduling
### What changes were proposed in this pull request?

This adds UI updates to support stage level scheduling and ResourceProfiles. 3 main things have been added. ResourceProfile id added to the Stage page, the Executors page now has an optional selectable column to show the ResourceProfile Id of each executor, and the Environment page now has a section with the ResourceProfile ids.  Along with this the rest api for environment page was updated to include the Resource profile information.

I debating on splitting the resource profile information into its own page but I wasn't sure it called for a completely separate page. Open to peoples thoughts on this.

Screen shots:
![Screen Shot 2020-04-01 at 3 07 46 PM](https://user-images.githubusercontent.com/4563792/78185169-469a7000-7430-11ea-8b0c-d9ede2d41df8.png)
![Screen Shot 2020-04-01 at 3 08 14 PM](https://user-images.githubusercontent.com/4563792/78185175-48fcca00-7430-11ea-8d1d-6b9333700f32.png)
![Screen Shot 2020-04-01 at 3 09 03 PM](https://user-images.githubusercontent.com/4563792/78185176-4a2df700-7430-11ea-92d9-73c382bb0f32.png)
![Screen Shot 2020-04-01 at 11 05 48 AM](https://user-images.githubusercontent.com/4563792/78185186-4dc17e00-7430-11ea-8962-f749dd47ea60.png)

### Why are the changes needed?

For user to be able to know what resource profile was used with which stage and executors. The resource profile information is also available so user debugging can see exactly what resources were requested with that profile.

### Does this PR introduce any user-facing change?

Yes, UI updates.

### How was this patch tested?

Unit tests and tested on yarn both active applications and with the history server.

Closes #28094 from tgravescs/SPARK-29303-pr.

Lead-authored-by: Thomas Graves <tgraves@nvidia.com>
Co-authored-by: Thomas Graves <tgraves@apache.org>
Signed-off-by: Thomas Graves <tgraves@apache.org>
2020-05-21 13:11:35 -05:00
iRakson f1495c5bc0 [SPARK-31688][WEBUI] Refactor Pagination framework
### What changes were proposed in this pull request?
Currently while implementing pagination using the existing pagination framework, a lot of code is being copied as pointed out [here](https://github.com/apache/spark/pull/28485#pullrequestreview-408881656).

I introduced some changes in `PagedTable` which is the main trait for implementing the pagination.
* Added function for getting table parameters.
* Added a function for table header row. This will help in maintaining consistency across the tables. All the header rows across tables will be consistent now.

### Why are the changes needed?

* A lot of code is copied every time pagination is implemented for any table.
* Code readability is not great as lot of HTML is embedded.
* Paginating other tables will be a lot easier now.

### Does this PR introduce _any_ user-facing change?
No.

### How was this patch tested?
Manually. This is mainly refactoring work, no new functionality introduced. Existing test cases should pass.

Closes #28512 from iRakson/refactorPaginationFramework.

Authored-by: iRakson <raksonrakesh@gmail.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2020-05-21 13:00:00 -05:00
Vinoo Ganesh dae79888dc [SPARK-31354] SparkContext only register one SparkSession ApplicationEnd listener
## What changes were proposed in this pull request?

This change was made as a result of the conversation on https://issues.apache.org/jira/browse/SPARK-31354 and is intended to continue work from that ticket here.

This change fixes a memory leak where SparkSession listeners are never cleared off of the SparkContext listener bus.

Before running this PR, the following code:
```
SparkSession.builder().master("local").getOrCreate()
SparkSession.clearActiveSession()
SparkSession.clearDefaultSession()

SparkSession.builder().master("local").getOrCreate()
SparkSession.clearActiveSession()
SparkSession.clearDefaultSession()
```
would result in a SparkContext with the following listeners on the listener bus:
```
[org.apache.spark.status.AppStatusListener5f610071,
org.apache.spark.HeartbeatReceiverd400c17,
org.apache.spark.sql.SparkSession$$anon$125849aeb, <-First instance
org.apache.spark.sql.SparkSession$$anon$1fadb9a0] <- Second instance
```
After this PR, the execution of the same code above results in SparkContext with the following listeners on the listener bus:
```
[org.apache.spark.status.AppStatusListener5f610071,
org.apache.spark.HeartbeatReceiverd400c17,
org.apache.spark.sql.SparkSession$$anon$125849aeb] <-One instance
```
## How was this patch tested?

* Unit test included as a part of the PR

Closes #28128 from vinooganesh/vinooganesh/SPARK-27958.

Lead-authored-by: Vinoo Ganesh <vinoo.ganesh@gmail.com>
Co-authored-by: Vinoo Ganesh <vganesh@palantir.com>
Co-authored-by: Vinoo Ganesh <vinoo@safegraph.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-05-21 16:06:28 +00:00
Max Gekk 5d673319af [SPARK-31762][SQL] Fix perf regression of date/timestamp formatting in toHiveString
### What changes were proposed in this pull request?
1. Add new methods that accept date-time Java types to the DateFormatter and TimestampFormatter traits. The methods format input date-time instances to strings:
    - TimestampFormatter:
      - `def format(ts: Timestamp): String`
      - `def format(instant: Instant): String`
    - DateFormatter:
      - `def format(date: Date): String`
      - `def format(localDate: LocalDate): String`
2. Re-use the added methods from `HiveResult.toHiveString`
3. Borrow the code for formatting of `java.sql.Timestamp` from Spark 2.4 `DateTimeUtils.timestampToString` to `FractionTimestampFormatter` because legacy formatters don't support variable length patterns for seconds fractions.

### Why are the changes needed?
To avoid unnecessary overhead of converting Java date-time types to micros/days before formatting. Also formatters have to convert input micros/days back to Java types to pass instances to standard library API.

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
By existing tests for toHiveString and new tests in `TimestampFormatterSuite`.

Closes #28582 from MaxGekk/opt-format-old-types.

Authored-by: Max Gekk <max.gekk@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-05-21 04:01:19 +00:00
Dongjoon Hyun a06768ec4d
[SPARK-31780][K8S][TESTS] Add R test tag to exclude R K8s image building and test
### What changes were proposed in this pull request?

This PR aims to skip R image building and one R test during integration tests by using `--exclude-tags r`.

### Why are the changes needed?

We have only one R integration test case, `Run SparkR on simple dataframe.R example`, for submission test coverage. Since this is rarely changed, we can skip this and save the efforts required for building the whole R image and running the single test.
```
KubernetesSuite:
...
- Run SparkR on simple dataframe.R example
Run completed in 10 minutes, 20 seconds.
Total number of tests run: 20
```

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Pass the K8S integration test and do the following manually. (Note that R test is skipped)
```
$ resource-managers/kubernetes/integration-tests/dev/dev-run-integration-tests.sh --deploy-mode docker-for-desktop --exclude-tags r --spark-tgz $PWD/spark-*.tgz
...
KubernetesSuite:
- Run SparkPi with no resources
- Run SparkPi with a very long application name.
- Use SparkLauncher.NO_RESOURCE
- Run SparkPi with a master URL without a scheme.
- Run SparkPi with an argument.
- Run SparkPi with custom labels, annotations, and environment variables.
- All pods have the same service account by default
- Run extraJVMOptions check on driver
- Run SparkRemoteFileTest using a remote data file
- Run SparkPi with env and mount secrets.
- Run PySpark on simple pi.py example
- Run PySpark with Python2 to test a pyfiles example
- Run PySpark with Python3 to test a pyfiles example
- Run PySpark with memory customization
- Run in client mode.
- Start pod creation from template
- PVs with local storage
- Launcher client dependencies
- Test basic decommissioning
Run completed in 10 minutes, 23 seconds.
Total number of tests run: 19
Suites: completed 2, aborted 0
Tests: succeeded 19, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
```

Closes #28594 from dongjoon-hyun/SPARK-31780.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-05-20 18:33:38 -07:00
yi.wu 26bc690722 [SPARK-30689][CORE][FOLLOW-UP] Add @since annotation for ResourceDiscoveryScriptPlugin/ResourceInformation
### What changes were proposed in this pull request?

Added `since 3.0.0` for `ResourceDiscoveryScriptPlugin` and `ResourceInformation`.

### Why are the changes needed?

It's required for exposed APIs(https://github.com/apache/spark/pull/27689#discussion_r426488851).

### Does this PR introduce _any_ user-facing change?

Yes, they can easily know when does Spark introduces the API.

### How was this patch tested?

Pass Jenkins.

Closes #28591 from Ngone51/followup-30689.

Authored-by: yi.wu <yi.wu@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-05-21 03:11:20 +09:00
Ali Smesseim d40ecfa3f7
[SPARK-31387][SQL] Handle unknown operation/session ID in HiveThriftServer2Listener
### What changes were proposed in this pull request?

This is a recreation of #28155, which was reverted due to causing test failures.

The update methods in HiveThriftServer2Listener now check if the parameter operation/session ID actually exist in the `sessionList` and `executionList` respectively. This prevents NullPointerExceptions if the operation or session ID is unknown. Instead, a warning is written to the log.

To improve robustness, we also make the following changes in HiveSessionImpl.close():

- Catch any exception thrown by `operationManager.closeOperation`. If for any reason this throws an exception, other operations are not prevented from being closed.
- Handle not being able to access the scratch directory. When closing, all `.pipeout` files are removed from the scratch directory, which would have resulted in an NPE if the directory does not exist.

### Why are the changes needed?

The listener's update methods would throw an exception if the operation or session ID is unknown. In Spark 2, where the listener is called directly, this changes the caller's control flow. In Spark 3, the exception is caught by the ListenerBus but results in an uninformative NullPointerException.

In HiveSessionImpl.close(), if an exception is thrown when closing an operation, all following operations are not closed.

### Does this PR introduce any user-facing change?

No

### How was this patch tested?

Unit tests

Closes #28544 from alismess-db/hive-thriftserver-listener-update-safer-2.

Authored-by: Ali Smesseim <ali.smesseim@databricks.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-05-20 10:30:17 -07:00
Kent Yao 7e2ed40d58 [SPARK-31759][DEPLOY] Support configurable max number of rotate logs for spark daemons
### What changes were proposed in this pull request?

in `spark-daemon.sh`, `spark_rotate_log()` accepts `$2` as a custom setting for the number of maximum rotate log files, but this part of code is actually never used.

This PR adds `SPARK_LOG_MAX_FILES` environment variable to represent the maximum log files of Spark daemons can rotate to.

### Why are the changes needed?

the logs files that all spark daemons are hardcoded as 5, but it supposed to be configurable

### Does this PR introduce _any_ user-facing change?

yes, SPARK_LOG_MAX_FILES is added to represent the maximum log files of Spark daemons can rotate to.

### How was this patch tested?

verify locally for the added shell script:

```shell
 kentyaohulk  ~  SPARK_LOG_MAX_FILES=1 sh test.sh
1
 kentyaohulk  ~  SPARK_LOG_MAX_FILES=a sh test.sh
Error: SPARK_LOG_MAX_FILES must be a postive number
 ✘ kentyaohulk  ~  SPARK_LOG_MAX_FILES=b sh test.sh
Error: SPARK_LOG_MAX_FILES must be a postive number
 ✘ kentyaohulk  ~  SPARK_LOG_MAX_FILES=-1 sh test.sh
Error: SPARK_LOG_MAX_FILES must be a postive number
 ✘ kentyaohulk  ~  sh test.sh
5
 ✘ kentyaohulk  ~  cat test.sh
#!/bin/bash

if [[ -z ${SPARK_LOG_MAX_FILES} ]] ; then
      num=5
elif [[ ${SPARK_LOG_MAX_FILES} -gt 0 ]]; then
      num=${SPARK_LOG_MAX_FILES}
else
    echo "Error: SPARK_LOG_MAX_FILES must be a postive number"
    exit -1
fi
```

Closes #28580 from yaooqinn/SPARK-31759.

Authored-by: Kent Yao <yaooqinn@hotmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-05-20 19:18:05 +09:00
Izek Greenfield eaf7a2a4ed [SPARK-8981][CORE][TEST-HADOOP3.2][TEST-JAVA11] Add MDC support in Executor
### What changes were proposed in this pull request?
Added MDC support in all thread pools.
ThreaddUtils create new pools that pass over MDC.

### Why are the changes needed?
In many cases, it is very hard to understand from which actions the logs in the executor come from.
when you are doing multi-thread work in the driver and send actions in parallel.

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
No test added because no new functionality added it is thread pull change and all current tests pass.

Closes #26624 from igreenfield/master.

Authored-by: Izek Greenfield <igreenfield@axiomsl.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-05-20 07:41:00 +00:00
Dongjoon Hyun b7947e0285 [SPARK-31766][K8S][TESTS] Add Spark version prefix to K8s UUID test image tag
### What changes were proposed in this pull request?

This PR aims to add Spark version prefix during generating test image tag for K8s integration testing.

### Why are the changes needed?

This helps to distinguish the images by version.

**BEFORE**
```
$ docker images | grep kubespark
kubespark/spark-py  F7188CBD-AE08-4705-9C8A-D0DD3DC8B86F  ...
kubespark/spark     F7188CBD-AE08-4705-9C8A-D0DD3DC8B86F  ...
```

**AFTER**
```
$ docker images | grep kubespark
kubespark/spark-py  3.1.0-SNAPSHOT_F7188CBD-AE08-4705-9C8A-D0DD3DC8B86F ...
kubespark/spark     3.1.0-SNAPSHOT_F7188CBD-AE08-4705-9C8A-D0DD3DC8B86F ...
```

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Pass the K8s integration test.

```
...
Successfully tagged kubespark/spark:3.1.0-SNAPSHOT_688b46c8-c119-404d-aadb-d05a14262db7
...
Successfully tagged kubespark/spark-py:3.1.0-SNAPSHOT_688b46c8-c119-404d-aadb-d05a14262db7
...
Successfully tagged kubespark/spark-r:3.1.0-SNAPSHOT_688b46c8-c119-404d-aadb-d05a14262db7
```

Closes #28587 from dongjoon-hyun/SPARK-31766.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-05-20 14:55:23 +09:00
HyukjinKwon dc3a606fbd
[SPARK-31767][PYTHON][CORE] Remove ResourceInformation in pyspark module's namespace
### What changes were proposed in this pull request?

This PR proposes to only allow the import of `ResourceInformation` as below:

```
pyspark.resource.ResourceInformation
```

instead of

```
pyspark.ResourceInformation
pyspark.resource.ResourceInformation
```

because `pyspark.resource` is a separate module, and it is documented so.
The constructor of `ResourceInformation` isn't supposed to directly call anyway.

### Why are the changes needed?

To keep the code structure coherent.

### Does this PR introduce _any_ user-facing change?

No, it will be in the unreleased branches.

### How was this patch tested?

Manually tested via importing:

Before:

```python
>>> import pyspark
>>> pyspark.ResourceInformation
<class 'pyspark.resource.information.ResourceInformation'>
>>> pyspark.resource.ResourceInformation
<class 'pyspark.resource.information.ResourceInformation'>
```

After:

```python
>>> import pyspark
>>> pyspark.ResourceInformation
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
AttributeError: module 'pyspark' has no attribute 'ResourceInformation'
>>> pyspark.resource.ResourceInformation
<class 'pyspark.resource.information.ResourceInformation'>
```

Also tested via

```bash
cd python
./run-tests --python-executables=python3 --modules=pyspark-core,pyspark-resource
```

Jenkins will test and existing tests should cover.

Closes #28589 from HyukjinKwon/SPARK-31767.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-05-19 22:36:36 -07:00
Wenchen Fan 34414acfa3 [SPARK-31706][SQL] add back the support of streaming update mode
### What changes were proposed in this pull request?

This PR adds a private `WriteBuilder` mixin trait: `SupportsStreamingUpdate`, so that the builtin v2 streaming sinks can still support the update mode.

Note: it's private because we don't have a proper design yet. I didn't take the proposal in https://github.com/apache/spark/pull/23702#discussion_r258593059 because we may want something more general, like updating by an expression `key1 = key2 + 10`.

### Why are the changes needed?

In Spark 2.4, all builtin v2 streaming sinks support all streaming output modes, and v2 sinks are enabled by default, see https://issues.apache.org/jira/browse/SPARK-22911

It's too risky for 3.0 to go back to v1 sinks, so I propose to add a private trait to fix builtin v2 sinks, to keep backward compatibility.

### Does this PR introduce _any_ user-facing change?

Yes, now all the builtin v2 streaming sinks support all streaming output modes, which is the same as 2.4

### How was this patch tested?

existing tests.

Closes #28523 from cloud-fan/update.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-05-20 03:45:13 +00:00
yi.wu 0fd98abd85 [SPARK-31750][SQL] Eliminate UpCast if child's dataType is DecimalType
### What changes were proposed in this pull request?

Eliminate the `UpCast` if it's child data type is already decimal type.

### Why are the changes needed?

While deserializing internal `Decimal` value to external `BigDecimal`(Java/Scala) value, Spark should also respect `Decimal`'s precision and scale, otherwise it will cause precision lost and look weird in some cases, e.g.:

```
sql("select cast(11111111111111111111111111111111111111 as decimal(38, 0)) as d")
  .write.mode("overwrite")
  .parquet(f.getAbsolutePath)

// can fail
spark.read.parquet(f.getAbsolutePath).as[BigDecimal]
```
```
[info]   org.apache.spark.sql.AnalysisException: Cannot up cast `d` from decimal(38,0) to decimal(38,18).
[info] The type path of the target object is:
[info] - root class: "scala.math.BigDecimal"
[info] You can either add an explicit cast to the input data or choose a higher precision type of the field in the target object;
[info]   at org.apache.spark.sql.catalyst.analysis.Analyzer$ResolveUpCast$.org$apache$spark$sql$catalyst$analysis$Analyzer$ResolveUpCast$$fail(Analyzer.scala:3060)
[info]   at org.apache.spark.sql.catalyst.analysis.Analyzer$ResolveUpCast$$anonfun$apply$33$$anonfun$applyOrElse$174.applyOrElse(Analyzer.scala:3087)
[info]   at org.apache.spark.sql.catalyst.analysis.Analyzer$ResolveUpCast$$anonfun$apply$33$$anonfun$applyOrElse$174.applyOrElse(Analyzer.scala:3071)
[info]   at org.apache.spark.sql.catalyst.trees.TreeNode.$anonfun$transformDown$1(TreeNode.scala:309)
[info]   at org.apache.spark.sql.catalyst.trees.CurrentOrigin$.withOrigin(TreeNode.scala:72)
[info]   at org.apache.spark.sql.catalyst.trees.TreeNode.transformDown(TreeNode.scala:309)
[info]   at org.apache.spark.sql.catalyst.trees.TreeNode.$anonfun$transformDown$3(TreeNode.scala:314)
```

### Does this PR introduce _any_ user-facing change?

Yes, for cases(cause precision lost) mentioned above will fail before this change but run successfully after this change.

### How was this patch tested?

Added tests.

Closes #28572 from Ngone51/fix_encoder.

Authored-by: yi.wu <yi.wu@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-05-20 11:00:58 +09:00
HyukjinKwon 6fb22aa42d
[SPARK-31748][PYTHON] Document resource module in PySpark doc and rename/move classes
### What changes were proposed in this pull request?

This PR is kind of a followup for SPARK-29641 and SPARK-28234. This PR proposes:

1.. Document the new `pyspark.resource` module introduced at 95aec091e4, in PySpark API docs.

2.. Move classes into fewer and simpler modules

Before:

```
pyspark
├── resource
│   ├── executorrequests.py
│   │   ├── class ExecutorResourceRequest
│   │   └── class ExecutorResourceRequests
│   ├── taskrequests.py
│   │   ├── class TaskResourceRequest
│   │   └── class TaskResourceRequests
│   ├── resourceprofilebuilder.py
│   │   └── class ResourceProfileBuilder
│   ├── resourceprofile.py
│   │   └── class ResourceProfile
└── resourceinformation
    └── class ResourceInformation
```

After:

```
pyspark
└── resource
    ├── requests.py
    │   ├── class ExecutorResourceRequest
    │   ├── class ExecutorResourceRequests
    │   ├── class TaskResourceRequest
    │   └── class TaskResourceRequests
    ├── profile.py
    │   ├── class ResourceProfileBuilder
    │   └── class ResourceProfile
    └── information.py
        └── class ResourceInformation
```

3.. Minor docstring fix e.g.:

```diff
-     param name the name of the resource
-     param addresses an array of strings describing the addresses of the resource
+     :param name: the name of the resource
+     :param addresses: an array of strings describing the addresses of the resource
+
+     .. versionadded:: 3.0.0
```

### Why are the changes needed?

To document APIs, and move Python modules to fewer and simpler modules.

### Does this PR introduce _any_ user-facing change?

No, the changes are in unreleased branches.

### How was this patch tested?

Manually tested via:

```bash
cd python
./run-tests --python-executables=python3 --modules=pyspark-core
./run-tests --python-executables=python3 --modules=pyspark-resource
```

Closes #28569 from HyukjinKwon/SPARK-28234-SPARK-29641-followup.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-05-19 17:09:37 -07:00
Kent Yao 1f29f1ba58 [SPARK-31684][SQL] Overwrite partition failed with 'WRONG FS' when the target partition is not belong to the filesystem as same as the table
### What changes were proposed in this pull request?

With SPARK-18107, we will disable the underlying replace(overwrite) and instead do delete in spark side and only do copy in hive side to bypass the performance issue - [HIVE-11940](https://issues.apache.org/jira/browse/HIVE-11940)

Conditionally, if the table location and partition location do not belong to the same `FileSystem`, We should not disable hive overwrite. Otherwise, hive will use the `FileSystem` instance belong to the table location to copy files, which will fail in `FileSystem#checkPath`
https://github.com/apache/hive/blob/rel/release-2.3.7/ql/src/java/org/apache/hadoop/hive/ql/metadata/Hive.java#L1657

In this PR, for Hive 2.0.0 and onwards, as [HIVE-11940](https://issues.apache.org/jira/browse/HIVE-11940) has been fixed, and there is no performance issue anymore. We should leave the overwrite logic to hive to avoid failure in `FileSystem#checkPath`

**NOTE THAT**  For Hive 2.2.0 and earlier, if the table and partition locations do not belong together, we will still get the same error thrown by hive encryption check due to  [HIVE-14380]( https://issues.apache.org/jira/browse/HIVE-14380) which need to fix in another ticket SPARK-31675.

### Why are the changes needed?

bugfix. a logic table can be decoupled with the storage layer and may contain data from remote storage systems.

### Does this PR introduce _any_ user-facing change?

no

### How was this patch tested?

Currently verified manually. add benchmark tests

```sql
-INSERT INTO DYNAMIC                                7742           7918         248          0.0      756044.0       1.0X
-INSERT INTO HYBRID                                 1289           1307          26          0.0      125866.3       6.0X
-INSERT INTO STATIC                                  371            393          38          0.0       36219.4      20.9X
-INSERT OVERWRITE DYNAMIC                           8456           8554         138          0.0      825790.3       0.9X
-INSERT OVERWRITE HYBRID                            1303           1311          12          0.0      127198.4       5.9X
-INSERT OVERWRITE STATIC                             434            447          13          0.0       42373.8      17.8X
+INSERT INTO DYNAMIC                                7382           7456         105          0.0      720904.8       1.0X
+INSERT INTO HYBRID                                 1128           1129           1          0.0      110169.4       6.5X
+INSERT INTO STATIC                                  349            370          39          0.0       34095.4      21.1X
+INSERT OVERWRITE DYNAMIC                           8149           8362         301          0.0      795821.8       0.9X
+INSERT OVERWRITE HYBRID                            1317           1318           2          0.0      128616.7       5.6X
+INSERT OVERWRITE STATIC                             387            408          37          0.0       37804.1      19.1X
```

+ for master
- for this PR

both using hive 2.3.7

Closes #28511 from yaooqinn/SPARK-31684.

Authored-by: Kent Yao <yaooqinn@hotmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-05-19 14:08:51 +00:00
Ali Afroozeh b9cc31cd95 [SPARK-31721][SQL] Assert optimized is initialized before tracking the planning time
### What changes were proposed in this pull request?
The QueryPlanningTracker in QueryExeuction reports the planning time that also includes the optimization time. This happens because the optimizedPlan in QueryExecution is lazy and only will initialize when first called. When df.queryExecution.executedPlan is called, the the tracker starts recording the planning time, and then calls the optimized plan. This causes the planning time to start before optimization and also include the planning time.
This PR fixes this behavior by introducing a method assertOptimized, similar to assertAnalyzed that explicitly initializes the optimized plan. This method is called before measuring the time for sparkPlan and executedPlan. We call it before sparkPlan because that also counts as planning time.

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
Unit tests

Closes #28543 from dbaliafroozeh/AddAssertOptimized.

Authored-by: Ali Afroozeh <ali.afroozeh@databricks.com>
Signed-off-by: herman <herman@databricks.com>
2020-05-19 11:10:49 +02:00
yi.wu 653ca19b1f [SPARK-31651][CORE] Improve handling the case where different barrier sync types in a single sync
### What changes were proposed in this pull request?

This PR improves handling the case where different barrier sync types in a single sync:

- use `clear` instead of `cleanupBarrierStage `

- make sure all requesters are failed because of "different barrier sync types"

### Why are the changes needed?

Currently, we use `cleanupBarrierStage` to clean up a barrier stage when we detecting the case of "different barrier sync types". But this leads to a problem that we could create new a `ContextBarrierState` for the same stage again if there're on-way requests from tasks. As a result, those task will fail because of killing instead of "different barrier sync types".

Besides, we don't handle the current request which is being handling properly as it will fail due to epoch mismatch instead of "different barrier sync types".

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Updated a existed test.

Closes #28462 from Ngone51/impr_barrier_req.

Authored-by: yi.wu <yi.wu@databricks.com>
Signed-off-by: Xingbo Jiang <xingbo.jiang@databricks.com>
2020-05-18 23:54:41 -07:00
Eren Avsarogullari ab4cf49a1c [SPARK-31440][SQL] Improve SQL Rest API
### What changes were proposed in this pull request?
SQL Rest API exposes query execution metrics as Public API. This PR aims to apply following improvements on SQL Rest API by aligning Spark-UI.

**Proposed Improvements:**
1- Support Physical Operations and group metrics per physical operation by aligning Spark UI.
2- Support `wholeStageCodegenId` for Physical Operations
3- `nodeId` can be useful for grouping metrics and sorting physical operations (according to execution order) to differentiate same operators (if used multiple times during the same query execution) and their metrics.
4- Filter `empty` metrics by aligning with Spark UI - SQL Tab. Currently, Spark UI does not show empty metrics.
5- Remove line breakers(`\n`) from `metricValue`.
6- `planDescription` can be `optional` Http parameter to avoid network cost where there is specially complex jobs creating big-plans.
7- `metrics` attribute needs to be exposed at the bottom order as `nodes`. Specially, this can be useful for the user where `nodes` array size is high.
8- `edges` attribute is being exposed to show relationship between `nodes`.
9- Reverse order on `metricDetails` aims to match with Spark UI by supporting Physical Operators' execution order.

### Why are the changes needed?
Proposed improvements provides more useful (e.g: physical operations and metrics correlation, grouping) and clear (e.g: filtering blank metrics, removing line breakers) result for the end-user.

### Does this PR introduce any user-facing change?
Yes. Please find both current and improved versions of the results as attached for following SQL Rest Endpoint:
```
curl -X GET http://localhost:4040/api/v1/applications/$appId/sql/$executionId?details=true
```
**Current version:**
https://issues.apache.org/jira/secure/attachment/12999821/current_version.json

**Improved version:**
https://issues.apache.org/jira/secure/attachment/13000621/improved_version.json

### Backward Compatibility
SQL Rest API will be started to expose with `Spark 3.0` and `3.0.0-preview2` (released on 12/23/19) does not cover this API so if PR can catch 3.0 release, this will not have any backward compatibility issue.

### How was this patch tested?
1. New Unit tests are added.
2. Also, patch has been tested manually through both **Spark Core** and **History Server** Rest APIs.

Closes #28208 from erenavsarogullari/SPARK-31440.

Authored-by: Eren Avsarogullari <eren.avsarogullari@gmail.com>
Signed-off-by: Gengliang Wang <gengliang.wang@databricks.com>
2020-05-18 23:21:32 -07:00
Prakhar Jain c560428fe0 [SPARK-20732][CORE] Decommission cache blocks to other executors when an executor is decommissioned
### What changes were proposed in this pull request?
After changes in SPARK-20628, CoarseGrainedSchedulerBackend can decommission an executor and stop assigning new tasks on it. We should also decommission the corresponding blockmanagers in the same way. i.e. Move the cached RDD blocks from those executors to other active executors.

### Why are the changes needed?
We need to gracefully decommission the block managers so that the underlying RDD cache blocks are not lost in case the executors are taken away forcefully after some timeout (because of spotloss/pre-emptible VM etc). Its good to save as much cache data as possible.

Also In future once the decommissioning signal comes from Cluster Manager (say YARN/Mesos etc), dynamic allocation + this change gives us opportunity to downscale the executors faster by making the executors free of cache data.

Note that this is a best effort approach. We try to move cache blocks from decommissioning executors to active executors. If the active executors don't have free resources available on them for caching, then the decommissioning executors will keep the cache block which it was not able to move and it will still be able to serve them.

Current overall Flow:

1. CoarseGrainedSchedulerBackend receives a signal to decommissionExecutor. On receiving the signal, it do 2 things - Stop assigning new tasks (SPARK-20628), Send another message to BlockManagerMasterEndpoint (via BlockManagerMaster) to decommission the corresponding BlockManager.

2. BlockManagerMasterEndpoint receives "DecommissionBlockManagers" message. On receiving this, it moves the corresponding block managers to "decommissioning" state. All decommissioning BMs are excluded from the getPeers RPC call which is used for replication. All these decommissioning BMs are also sent message from BlockManagerMasterEndpoint to start decommissioning process on themselves.

3. BlockManager on worker (say BM-x) receives the "DecommissionBlockManager" message. Now it will start BlockManagerDecommissionManager thread to offload all the RDD cached blocks. This thread can make multiple reattempts to decommission the existing cache blocks (multiple reattempts might be needed as there might not be sufficient space in other active BMs initially).

### Does this PR introduce any user-facing change?
NO

### How was this patch tested?
Added UTs.

Closes #28370 from prakharjain09/SPARK-20732-rddcache-1.

Authored-by: Prakhar Jain <prakharjain09@gmail.com>
Signed-off-by: Holden Karau <hkarau@apple.com>
2020-05-18 11:37:53 -07:00
Max Gekk b3686a7622 [SPARK-31738][SQL][DOCS] Describe 'L' and 'M' month pattern letters
### What changes were proposed in this pull request?
1. Describe standard 'M' and stand-alone 'L' text forms
2. Add examples for all supported number of month letters

<img width="1047" alt="Screenshot 2020-05-18 at 08 57 31" src="https://user-images.githubusercontent.com/1580697/82178856-b16f1000-98e5-11ea-87c0-456ef94dcd43.png">

### Why are the changes needed?
To improve docs and show how to use month patterns.

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
By building docs and checking by eyes.

Closes #28558 from MaxGekk/describe-L-M-date-pattern.

Authored-by: Max Gekk <max.gekk@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-05-18 12:07:01 +00:00
David Toneian acab558e55 [SPARK-31739][PYSPARK][DOCS][MINOR] Fix docstring syntax issues and misplaced space characters
This commit is published into the public domain.

### What changes were proposed in this pull request?
Some syntax issues in docstrings have been fixed.

### Why are the changes needed?
In some places, the documentation did not render as intended, e.g. parameter documentations were not formatted as such.

### Does this PR introduce any user-facing change?
Slight improvements in documentation.

### How was this patch tested?
Manual testing and `dev/lint-python` run. No new Sphinx warnings arise due to this change.

Closes #28559 from DavidToneian/SPARK-31739.

Authored-by: David Toneian <david@toneian.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-05-18 20:25:02 +09:00
HyukjinKwon 3bf7bf99e9 [SPARK-31746][YARN][TESTS] Show the actual error message in LocalityPlacementStrategySuite
### What changes were proposed in this pull request?

This PR proposes to show the actual traceback when "handle large number of containers and tasks (SPARK-18750)" test fails in `LocalityPlacementStrategySuite`.

**It does not fully resolve the JIRA SPARK-31746 yet**. I tried to reproduce in my local by controlling the factors in the tests but I couldn't. I double checked the changes in SPARK-18750 are still valid.

### Why are the changes needed?

This test is flaky for an unknown reason (see https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/122768/testReport/org.apache.spark.deploy.yarn/LocalityPlacementStrategySuite/handle_large_number_of_containers_and_tasks__SPARK_18750_/):

```
sbt.ForkMain$ForkError: org.scalatest.exceptions.TestFailedException: java.lang.StackOverflowError did not equal null
	at org.scalatest.Assertions.newAssertionFailedException(Assertions.scala:530)
	at org.scalatest.Assertions.newAssertionFailedException$(Assertions.scala:529)
	at org.scalatest.FunSuite.newAssertionFailedException(FunSuite.scala:1560)
	at org.scalatest.Assertions$AssertionsHelper.macroAssert(Assertions.scala:503)
```

After this PR, it will help to investigate the root cause:

**Before**:

```
[info] - handle large number of containers and tasks (SPARK-18750) *** FAILED *** (824 milliseconds)
[info]   java.lang.StackOverflowError did not equal null (LocalityPlacementStrategySuite.scala:49)
[info]   org.scalatest.exceptions.TestFailedException:
[info]   at org.scalatest.Assertions.newAssertionFailedException(Assertions.scala:530)
[info]   at org.scalatest.Assertions.newAssertionFailedException$(Assertions.scala:529)
[info]   at org.scalatest.FunSuite.newAssertionFailedException(FunSuite.scala:1560)
[info]   at org.scalatest.Assertions$AssertionsHelper.macroAssert(Assertions.scala:503)
[info]   at org.apache.spark.deploy.yarn.LocalityPlacementStrategySuite.$anonfun$new$1(LocalityPlacementStrategySuite.scala:49)
[info]   at org.scalatest.OutcomeOf.outcomeOf(OutcomeOf.scala:85)
[info]   at org.scalatest.OutcomeOf.outcomeOf$(OutcomeOf.scala:83)
[info]   at org.scalatest.OutcomeOf$.outcomeOf(OutcomeOf.scala:104)
[info]   at org.scalatest.Transformer.apply(Transformer.scala:22)
[info]   at org.scalatest.Transformer.apply(Transformer.scala:20)
[info]   at org.scalatest.FunSuiteLike$$anon$1.apply(FunSuiteLike.scala:186)
[info]   at org.apache.spark.SparkFunSuite.withFixture(SparkFunSuite.scala:157)
[info]   at org.scalatest.FunSuiteLike.invokeWithFixture$1(FunSuiteLike.scala:184)
[info]   at org.scalatest.FunSuiteLike.$anonfun$runTest$1(FunSuiteLike.scala:196)
[info]   at org.scalatest.SuperEngine.runTestImpl(Engine.scala:286)
[info]   at org.scalatest.FunSuiteLike.runTest(FunSuiteLike.scala:196)
[info]   at org.scalatest.FunSuiteLike.runTest$(FunSuiteLike.scala:178)
...
```

**After**:

```
[info] - handle large number of containers and tasks (SPARK-18750) *** FAILED *** (825 milliseconds)
[info]   StackOverflowError should not be thrown; however, got:
[info]
[info]    java.lang.StackOverflowError
[info]   	at scala.collection.TraversableLike.$anonfun$filterImpl$1(TraversableLike.scala:256)
[info]   	at scala.collection.MapLike$MappedValues.$anonfun$foreach$3(MapLike.scala:256)
[info]   	at scala.collection.TraversableLike$WithFilter.$anonfun$foreach$1(TraversableLike.scala:877)
[info]   	at scala.collection.MapLike$MappedValues.$anonfun$foreach$3(MapLike.scala:256)
[info]   	at scala.collection.TraversableLike$WithFilter.$anonfun$foreach$1(TraversableLike.scala:877)
[info]   	at scala.collection.MapLike$MappedValues.$anonfun$foreach$3(MapLike.scala:256)
[info]   	at scala.collection.TraversableLike$WithFilter.$anonfun$foreach$1(TraversableLike.scala:877)
[info]   	at scala.collection.MapLike$MappedValues.$anonfun$foreach$3(MapLike.scala:256)
[info]   	at scala.collection.TraversableLike$WithFilter.$anonfun$foreach$1(TraversableLike.scala:877)
[info]   	at scala.collection.MapLike$MappedValues.$anonfun$foreach$3(MapLike.scala:256)
[info]   	at scala.collection.TraversableLike$WithFilter.$anonfun$foreach$1(TraversableLike.scala:877)
[info]   	at scala.collection.MapLike$MappedValues.$anonfun$foreach$3(MapLike.scala:256)
[info]   	at scala.collection.TraversableLike$WithFilter.$anonfun$foreach$1(TraversableLike.scala:877)
[info]   	at scala.collection.MapLike$MappedValues.$anonfun$foreach$3(MapLike.scala:256)
[info]   	at scala.collection.TraversableLike$WithFilter.$anonfun$foreach$1(TraversableLike.scala:877)
[info]   	at scala.collection.MapLike$MappedValues.$anonfun$foreach$3(MapLike.scala:256)
...

```

### Does this PR introduce _any_ user-facing change?

No, dev-only.

### How was this patch tested?

Manually tested by reverting 76db394f2b locally.

Closes #28566 from HyukjinKwon/SPARK-31746.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-05-18 14:35:02 +09:00
Kris Mok dc01b7556f [SPARK-31399][CORE][TEST-HADOOP3.2][TEST-JAVA11] Support indylambda Scala closure in ClosureCleaner
### What changes were proposed in this pull request?

This PR proposes to enhance Spark's `ClosureCleaner` to support "indylambda" style of Scala closures to the same level as the existing implementation for the old (inner class) style ones. The goal is to reach feature parity with the support of the old style Scala closures, with as close to bug-for-bug compatibility as possible.

Specifically, this PR addresses one lacking support for indylambda closures vs the inner class closures:
- When a closure is declared in a Scala REPL and captures the enclosing REPL line object, such closure should be cleanable (unreferenced fields on the enclosing REPL line object should be cleaned)

This PR maintains the same limitations in the new indylambda closure support as the old inner class closures, in particular the following two:
- Cleaning is only available for one level of REPL line object. If a closure captures state from a REPL line object further out from the immediate enclosing one, it won't be subject to cleaning. See example below.
- "Sibling" closures are not handled yet. A "sibling" closure is defined here as a closure that is directly or indirectly referenced by the starting closure, but isn't lexically enclosing. e.g.
  ```scala
  {
    val siblingClosure = (x: Int) => x + this.fieldA   // captures `this`, references `fieldA` on `this`.
    val startingClosure = (y: Int) => y + this.fieldB + siblingClosure(y)  // captures `this` and `siblingClosure`, references `fieldB` on `this`.
  }
  ```

The changes are intended to be minimal, with further code cleanups planned in separate PRs.

Jargons:
- old, inner class style Scala closures, aka `delambdafy:inline`: default in Scala 2.11 and before
- new, "indylambda" style Scala closures, aka `delambdafy:method`: default in Scala 2.12 and later

### Why are the changes needed?

There had been previous effortsto extend Spark's `ClosureCleaner` to support "indylambda" Scala closures, which is necessary for proper Scala 2.12 support. Most notably the work done for [SPARK-14540](https://issues.apache.org/jira/browse/SPARK-14540).

But the previous efforts had missed one import scenario: a Scala closure declared in a Scala REPL, and it captures the enclosing `this` -- a REPL line object. e.g. in a Spark Shell:
```scala
:pa
class NotSerializableClass(val x: Int)
val ns = new NotSerializableClass(42)
val topLevelValue = "someValue"
val func = (j: Int) => {
  (1 to j).flatMap { x =>
    (1 to x).map { y => y + topLevelValue }
  }
}
<Ctrl+D>
sc.parallelize(0 to 2).map(func).collect
```
In this example, `func` refers to a Scala closure that captures the enclosing `this` because it needs to access `topLevelValue`, which is in turn implemented as a field on the enclosing REPL line object.

The existing `ClosureCleaner` in Spark supports cleaning this case in Scala 2.11-, and this PR brings feature parity to Scala 2.12+.

Note that the existing cleaning logic only supported one level of REPL line object nesting. This PR does not go beyond that. When a closure references state declared a few commands earlier, the cleaning will fail in both Scala 2.11 and Scala 2.12. e.g.
```scala
scala> :pa
// Entering paste mode (ctrl-D to finish)

class NotSerializableClass1(val x: Int)
case class Foo(id: String)
val ns = new NotSerializableClass1(42)
val topLevelValue = "someValue"

// Exiting paste mode, now interpreting.

defined class NotSerializableClass1
defined class Foo
ns: NotSerializableClass1 = NotSerializableClass1615b1baf
topLevelValue: String = someValue

scala> :pa
// Entering paste mode (ctrl-D to finish)

val closure2 = (j: Int) => {
  (1 to j).flatMap { x =>
    (1 to x).map { y => y + topLevelValue } // 2 levels
  }
}

// Exiting paste mode, now interpreting.

closure2: Int => scala.collection.immutable.IndexedSeq[String] = <function1>

scala> sc.parallelize(0 to 2).map(closure2).collect
org.apache.spark.SparkException: Task not serializable
...
```
in the Scala 2.11 / Spark 2.4.x case:
```
Caused by: java.io.NotSerializableException: NotSerializableClass1
Serialization stack:
	- object not serializable (class: NotSerializableClass1, value: NotSerializableClass1615b1baf)
	- field (class: $iw, name: ns, type: class NotSerializableClass1)
	- object (class $iw, $iw64df3f4b)
	- field (class: $iw, name: $iw, type: class $iw)
	- object (class $iw, $iw66e6e5e9)
	- field (class: $line14.$read, name: $iw, type: class $iw)
	- object (class $line14.$read, $line14.$readc310aa3)
	- field (class: $iw, name: $line14$read, type: class $line14.$read)
	- object (class $iw, $iw79224636)
	- field (class: $iw, name: $outer, type: class $iw)
	- object (class $iw, $iw636d4cdc)
	- field (class: $anonfun$1, name: $outer, type: class $iw)
	- object (class $anonfun$1, <function1>)
```
in the Scala 2.12 / Spark master case after this PR:
```
Caused by: java.io.NotSerializableException: NotSerializableClass1
Serialization stack:
	- object not serializable (class: NotSerializableClass1, value: NotSerializableClass16f3b4c9a)
	- field (class: $iw, name: ns, type: class NotSerializableClass1)
	- object (class $iw, $iw2945a3c1)
	- field (class: $iw, name: $iw, type: class $iw)
	- object (class $iw, $iw152705d0)
	- field (class: $line14.$read, name: $iw, type: class $iw)
	- object (class $line14.$read, $line14.$read7cf311eb)
	- field (class: $iw, name: $line14$read, type: class $line14.$read)
	- object (class $iw, $iwd980dac)
	- field (class: $iw, name: $outer, type: class $iw)
	- object (class $iw, $iw557d9532)
	- element of array (index: 0)
	- array (class [Ljava.lang.Object;, size 1)
	- field (class: java.lang.invoke.SerializedLambda, name: capturedArgs, type: class [Ljava.lang.Object;)
	- object (class java.lang.invoke.SerializedLambda, SerializedLambda[capturingClass=class $iw, functionalInterfaceMethod=scala/Function1.apply:(Ljava/lang/Object;)Ljava/lang/Object;, implementation=invokeStatic $anonfun$closure2$1$adapted:(L$iw;Ljava/lang/Object;)Lscala/collection/immutable/IndexedSeq;, instantiatedMethodType=(Ljava/lang/Object;)Lscala/collection/immutable/IndexedSeq;, numCaptured=1])
	- writeReplace data (class: java.lang.invoke.SerializedLambda)
	- object (class $Lambda$2103/815179920, $Lambda$2103/815179920569b57c4)
```

For more background of the new and old ways Scala lowers closures to Java bytecode, please see [A note on how NSC (New Scala Compiler) lowers lambdas](https://gist.github.com/rednaxelafx/e9ecd09bbd1c448dbddad4f4edf25d48#file-notes-md).

For more background on how Spark's `ClosureCleaner` works and what's needed to make it support "indylambda" Scala closures, please refer to [A Note on Apache Spark's ClosureCleaner](https://gist.github.com/rednaxelafx/e9ecd09bbd1c448dbddad4f4edf25d48#file-spark_closurecleaner_notes-md).

#### tl;dr

The `ClosureCleaner` works like a mark-sweep algorithm on fields:
- Finding (a chain of) outer objects referenced by the starting closure;
- Scanning the starting closure and its inner closures and marking the fields on the outer objects accessed;
- Cloning the outer objects, nulling out fields that are not accessed by any closure of concern.

##### Outer Objects

For the old, inner class style Scala closures, the "outer objects" is defined as the lexically enclosing closures of the starting closure, plus an optional enclosing REPL line object if these closures are defined in a Scala REPL. All of them are on a singly-linked `$outer` chain.

For the new, "indylambda" style Scala closures, the capturing implementation changed, so closures no longer refer to their enclosing closures via an `$outer` chain. However, a closure can still capture its enclosing REPL line object, much like the old style closures. The name of the field that captures this reference would be `arg$1` (instead of `$outer`).

So what's missing in the `ClosureCleaner` for the "indylambda" support is find and potentially clone+clean the captured enclosing `this` REPL line object. That's what this PR implements.

##### Inner Closures

The old, inner class style of Scala closures are compiled into separate inner classes, one per lambda body. So in order to discover the implementation (bytecode) of the inner closures, one has to jump over multiple classes. The name of such a class would contain the marker substring `$anonfun$`.

The new, "indylambda" style Scala closures are compiled into **static methods** in the class where the lambdas were declared. So for lexically nested closures, their lambda bodies would all be compiled into static methods **in the same class**. This makes it much easier to discover the implementation (bytecode) of the nested lambda bodies. The name of such a static method would contain the marker substring `$anonfun$`.

Discovery of inner closures involves scanning bytecode for certain patterns that represent the creation of a closure object for the inner closure.
- For inner class style: the closure object creation site is like `new <InnerClassForTheClosure>(captured args)`
- For "indylambda" style: the closure object creation site would be compiled into an `invokedynamic` instruction, with its "bootstrap method" pointing to the same one used by Java 8 for its serializable lambdas, and with the bootstrap method arguments pointing to the implementation method.

### Does this PR introduce _any_ user-facing change?

Yes. Before this PR, Spark 2.4 / 3.0 / master on Scala 2.12 would not support Scala closures declared in a Scala REPL that captures anything from the REPL line objects. After this PR, such scenario is supported.

### How was this patch tested?

Added new unit test case to `org.apache.spark.repl.SingletonReplSuite`. The new test case fails without the fix in this PR, and pases with the fix.

Closes #28463 from rednaxelafx/closure-cleaner-indylambda.

Authored-by: Kris Mok <kris.mok@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-05-18 05:32:57 +00:00
William Hyun 5bb1a09b5f
[SPARK-31740][K8S][TESTS] Use github URL instead of a broken link
This PR aims to use GitHub URL instead of a broken link in `BasicTestsSuite.scala`.

Currently, K8s integration test is broken:

https://amplab.cs.berkeley.edu/jenkins/view/Spark%20K8s%20Builds/job/spark-master-test-k8s/534/console

```
- Run SparkRemoteFileTest using a remote data file *** FAILED ***
  The code passed to eventually never returned normally. Attempted 130 times over 2.00109555135 minutes. Last failure message: false was not true. (KubernetesSuite.scala:370)
```

No.

Pass the K8s integration test.

Closes #28561 from williamhyun/williamhyun-patch-1.

Authored-by: williamhyun <62487364+williamhyun@users.noreply.github.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-05-17 22:13:16 -07:00
Max Gekk fc5b90243c [SPARK-31727][SQL] Fix error message of casting timestamp to int in ANSI non-codegen mode
### What changes were proposed in this pull request?
Change timestamp casting to int in ANSI and non-codegen mode, and make the error message consistent to the error messages in the codegen mode. In particular, casting to int is implemented in the same way as casting to short and byte.

### Why are the changes needed?
1. The error message in the non-codegen mode is diversed from the error message in the codegen mode.
2. The error message contains intermediate results that could confuse.

### Does this PR introduce _any_ user-facing change?
Yes. Before the changes, the error message of casting timestamp to int contains intermediate result but after the changes it contains the input values which causes arithmetic overflow.

### How was this patch tested?
By running the modified test suite `AnsiCastSuite`.

Closes #28549 from MaxGekk/fix-error-msg-cast-timestamp.

Authored-by: Max Gekk <max.gekk@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-05-18 05:00:50 +00:00
Dongjoon Hyun 64795f9e0c
[SPARK-31743][CORE] Add spark_info metric into PrometheusResource
### What changes were proposed in this pull request?

This PR aims to add `spark_info` metric into `PrometheusResource`.

### Why are the changes needed?

This exposes Apache Spark version and revision like the following.

![Screen Shot 2020-05-17 at 6 02 20 PM](https://user-images.githubusercontent.com/9700541/82165091-990ce000-9868-11ea-82d5-8ea344eef646.png)

![Screen Shot 2020-05-17 at 6 06 32 PM](https://user-images.githubusercontent.com/9700541/82165247-2cdeac00-9869-11ea-83aa-e8083fa12a92.png)

### Does this PR introduce _any_ user-facing change?

Yes, but it's exposed as an additional metric.

### How was this patch tested?

Manual.
```
$ bin/spark-shell --driver-memory 4G -c spark.ui.prometheus.enabled=true

$ curl -s http://localhost:4041/metrics/executors/prometheus/ | head -n1
spark_info{version="3.1.0", revision="097d5098cca987e5f7bbb8394783c01517ebed0f"} 1.0
```

Closes #28563 from dongjoon-hyun/SPARK-31743.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-05-17 21:35:42 -07:00
HyukjinKwon c6d1309962
[SPARK-31742][TESTS] Increase the eventually time limit for Mino kdc in tests to fix flakiness
### What changes were proposed in this pull request?

This PR is kind of a follow up of SPARK-31631. In some cases, it only attempts once for ~35 seconds. Seems 10 seconds are not enough to try multiple times - took a quick look and seems difficult to manipulate the socket configuration as well.

It simply proposes to increase the time limit for now. It affects master and branch-3.0.

```
sbt.ForkMain$ForkError: org.scalatest.exceptions.TestFailedDueToTimeoutException: The code passed to eventually never returned normally. Attempted 1 times over 34.294744142999996 seconds. Last failure message: Address already in use.
	at org.scalatest.concurrent.Eventually.tryTryAgain$1(Eventually.scala:432)
	at org.scalatest.concurrent.Eventually.eventually(Eventually.scala:439)
	at org.scalatest.concurrent.Eventually.eventually$(Eventually.scala:391)
	at org.scalatest.concurrent.Eventually$.eventually(Eventually.scala:479)
	at org.scalatest.concurrent.Eventually.eventually(Eventually.scala:308)
	at org.scalatest.concurrent.Eventually.eventually$(Eventually.scala:307)
	at org.scalatest.concurrent.Eventually$.eventually(Eventually.scala:479)
	at org.apache.spark.deploy.security.HadoopDelegationTokenManagerSuite.$anonfun$new$4(HadoopDelegationTokenManagerSuite.scala:106)
	at org.scalatest.OutcomeOf.outcomeOf(OutcomeOf.scala:85)
	at org.scalatest.OutcomeOf.outcomeOf$(OutcomeOf.scala:83)
	at org.scalatest.OutcomeOf$.outcomeOf(OutcomeOf.scala:104)
	at org.scalatest.Transformer.apply(Transformer.scala:22)
	at org.scalatest.Transformer.apply(Transformer.scala:20)
	at org.scalatest.FunSuiteLike$$anon$1.apply(FunSuiteLike.scala:186)
	at org.apache.spark.SparkFunSuite.withFixture(SparkFunSuite.scala:157)
	at org.scalatest.FunSuiteLike.invokeWithFixture$1(FunSuiteLike.scala:184)
	at org.scalatest.FunSuiteLike.$anonfun$runTest$1(FunSuiteLike.scala:196)
	at org.scalatest.SuperEngine.runTestImpl(Engine.scala:286)
	at org.scalatest.FunSuiteLike.runTest(FunSuiteLike.scala:196)
	at org.scalatest.FunSuiteLike.runTest$(FunSuiteLike.scala:178)
	at org.apache.spark.SparkFunSuite.org$scalatest$BeforeAndAfterEach$$super$runTest(SparkFunSuite.scala:59)
	at org.scalatest.BeforeAndAfterEach.runTest(BeforeAndAfterEach.scala:221)
	at org.scalatest.BeforeAndAfterEach.runTest$(BeforeAndAfterEach.scala:214)
	at org.apache.spark.SparkFunSuite.runTest(SparkFunSuite.scala:59)
	at org.scalatest.FunSuiteLike.$anonfun$runTests$1(FunSuiteLike.scala:229)
	at org.scalatest.SuperEngine.$anonfun$runTestsInBranch$1(Engine.scala:393)
	at scala.collection.immutable.List.foreach(List.scala:392)
	at org.scalatest.SuperEngine.traverseSubNodes$1(Engine.scala:381)
	at org.scalatest.SuperEngine.runTestsInBranch(Engine.scala:376)
	at org.scalatest.SuperEngine.runTestsImpl(Engine.scala:458)
	at org.scalatest.FunSuiteLike.runTests(FunSuiteLike.scala:229)
	at org.scalatest.FunSuiteLike.runTests$(FunSuiteLike.scala:228)
	at org.scalatest.FunSuite.runTests(FunSuite.scala:1560)
	at org.scalatest.Suite.run(Suite.scala:1124)
	at org.scalatest.Suite.run$(Suite.scala:1106)
	at org.scalatest.FunSuite.org$scalatest$FunSuiteLike$$super$run(FunSuite.scala:1560)
	at org.scalatest.FunSuiteLike.$anonfun$run$1(FunSuiteLike.scala:233)
	at org.scalatest.SuperEngine.runImpl(Engine.scala:518)
	at org.scalatest.FunSuiteLike.run(FunSuiteLike.scala:233)
	at org.scalatest.FunSuiteLike.run$(FunSuiteLike.scala:232)
	at org.apache.spark.SparkFunSuite.org$scalatest$BeforeAndAfterAll$$super$run(SparkFunSuite.scala:59)
	at org.scalatest.BeforeAndAfterAll.liftedTree1$1(BeforeAndAfterAll.scala:213)
	at org.scalatest.BeforeAndAfterAll.run(BeforeAndAfterAll.scala:210)
	at org.scalatest.BeforeAndAfterAll.run$(BeforeAndAfterAll.scala:208)
	at org.apache.spark.SparkFunSuite.run(SparkFunSuite.scala:59)
	at org.scalatest.tools.Framework.org$scalatest$tools$Framework$$runSuite(Framework.scala:317)
	at org.scalatest.tools.Framework$ScalaTestTask.execute(Framework.scala:510)
	at sbt.ForkMain$Run$2.call(ForkMain.java:296)
	at sbt.ForkMain$Run$2.call(ForkMain.java:286)
	at java.util.concurrent.FutureTask.run(FutureTask.java:266)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
Caused by: sbt.ForkMain$ForkError: java.net.BindException: Address already in use
	at sun.nio.ch.Net.bind0(Native Method)
	at sun.nio.ch.Net.bind(Net.java:433)
	at sun.nio.ch.Net.bind(Net.java:425)
	at sun.nio.ch.ServerSocketChannelImpl.bind(ServerSocketChannelImpl.java:223)
	at sun.nio.ch.ServerSocketAdaptor.bind(ServerSocketAdaptor.java:74)
	at org.apache.mina.transport.socket.nio.NioSocketAcceptor.open(NioSocketAcceptor.java:198)
	at org.apache.mina.transport.socket.nio.NioSocketAcceptor.open(NioSocketAcceptor.java:51)
	at org.apache.mina.core.polling.AbstractPollingIoAcceptor.registerHandles(AbstractPollingIoAcceptor.java:547)
	at org.apache.mina.core.polling.AbstractPollingIoAcceptor.access$400(AbstractPollingIoAcceptor.java:68)
	at org.apache.mina.core.polling.AbstractPollingIoAcceptor$Acceptor.run(AbstractPollingIoAcceptor.java:422)
	at org.apache.mina.util.NamePreservingRunnable.run(NamePreservingRunnable.java:64)
	... 3 more
```

### Why are the changes needed?

To fix flakiness in the tests.

### Does this PR introduce _any_ user-facing change?

No, dev-only.

### How was this patch tested?

Jenkins will test it out.

Closes #28562 from HyukjinKwon/SPARK-31742.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-05-17 21:33:42 -07:00
HyukjinKwon f352cef077
[SPARK-31744][R][INFRA] Remove Hive dependency in AppVeyor build temporarily
### What changes were proposed in this pull request?

This PR targets to remove Hive profile in SparkR build at AppVeyor in order to:
- Speed up the build. Currently, SparkR build is [reaching the time limit](https://ci.appveyor.com/project/ApacheSoftwareFoundation/spark/builds/32853533).
- Clean up the build profile.

### Why are the changes needed?

We're hitting a time limit issue again and this PR could reduce the build time.

Seems like we're [already skipping Hive related tests in SparkR](https://ci.appveyor.com/project/ApacheSoftwareFoundation/spark/builds/32853533) for some reasons, see below:

```
test_sparkSQL.R:307: skip: create DataFrame from RDD
Reason: Hive is not build with SparkSQL, skipped
test_sparkSQL.R:1341: skip: test HiveContext
Reason: Hive is not build with SparkSQL, skipped
test_sparkSQL.R:2813: skip: read/write ORC files
Reason: Hive is not build with SparkSQL, skipped
test_sparkSQL.R:2834: skip: read/write ORC files - compression option
Reason: Hive is not build with SparkSQL, skipped
test_sparkSQL.R:3727: skip: enableHiveSupport on SparkSession
Reason: Hive is not build with SparkSQL, skipped
```

Although we build with Hive profile. So, the Hive profile is useless here.

### Does this PR introduce _any_ user-facing change?

No, dev-only.

### How was this patch tested?

AppVeyor will test it out.

Closes #28564 from HyukjinKwon/SPARK-31744.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-05-17 21:31:06 -07:00
Sungpeo Kook 097d5098cc [MINOR] Fix a typo in FsHistoryProvider loginfo
## What changes were proposed in this pull request?
a typo in logging. (just added `: `)

Closes #28505 from sungpeo/typo_fshistoryprovider.

Authored-by: Sungpeo Kook <elixir.kook@kakaocorp.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2020-05-17 09:43:01 -05:00
Jungtaek Lim (HeartSaVioR) d2bec5e265 [SPARK-31707][SQL] Revert SPARK-30098 Use default datasource as provider for CREATE TABLE syntax
### What changes were proposed in this pull request?

This patch effectively reverts SPARK-30098 via below changes:

* Removed the config
* Removed the changes done in parser rule
* Removed the usage of config in tests
  * Removed tests which depend on the config
  * Rolled back some tests to before SPARK-30098 which were affected by SPARK-30098
* Reflect the change into docs (migration doc, create table syntax)

### Why are the changes needed?

SPARK-30098 brought confusion and frustration on using create table DDL query, and we agreed about the bad effect on the change.

Please go through the [discussion thread](http://apache-spark-developers-list.1001551.n3.nabble.com/DISCUSS-Resolve-ambiguous-parser-rule-between-two-quot-create-table-quot-s-td29051i20.html) to see the details.

### Does this PR introduce _any_ user-facing change?

No, compared to Spark 2.4.x. End users tried to experiment with Spark 3.0.0 previews will see the change that the behavior is going back to Spark 2.4.x, but I believe we won't guarantee compatibility in preview releases.

### How was this patch tested?

Existing UTs.

Closes #28517 from HeartSaVioR/revert-SPARK-30098.

Authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan.opensource@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-05-17 02:27:23 +00:00
Max Gekk 5539ecfdac [SPARK-31725][CORE][SQL][TESTS] Set America/Los_Angeles time zone and Locale.US in tests by default
### What changes were proposed in this pull request?
Set default time zone and locale in the default constructor of `SparkFunSuite`:
- Default time zone to `America/Los_Angeles`
- Default locale to `Locale.US`

### Why are the changes needed?
1. To deduplicate code by moving common time zone and locale settings to one place SparkFunSuite
2. To have the same default time zone and locale in all tests. This should prevent errors like https://github.com/apache/spark/pull/28538

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
by running all affected test suites

Closes #28548 from MaxGekk/timezone-settings-SparkFunSuite.

Authored-by: Max Gekk <max.gekk@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-05-17 02:26:00 +00:00
Dongjoon Hyun 53bf825ef8
[SPARK-31235][TESTS][FOLLOWUP] Disable test case specify a more specific type in Hadoop-3.2
### What changes were proposed in this pull request?

This PR aims to recover Hadoop-3.2 profile jobs on `master` branch by disabling a UT added by SPARK-31235 in Hadoop 3.2 temporarily. The target UT is not a flaky test. It always fail on Hadoop-3.2 profile currently although it works in Hadoop 2.7 profile. So, in this PR, we keep the test coverage in Hadoop 2.7 and ignore the test in Hadoop 3.2 temporarily to unblock the other PRs.

### Why are the changes needed?

SPARK-31235 added a test case which is breaking Hadoop 3.2 and there are two follow-up to fix it. Although two follow-ups can fix the UT in Hadoop 3.2 environment. The side-effect on Hadoop classes cause some random UT failures in the other suites.
- https://github.com/apache/spark/pull/28456
- https://github.com/apache/spark/pull/28550

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Pass the Jenkins with SBT/Maven.

Closes #28552 from dongjoon-hyun/SPARK-31235-2.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-05-16 15:12:45 -07:00
Wenchen Fan 2012d58475
[SPARK-31732][TESTS] Disable some flaky tests temporarily
### What changes were proposed in this pull request?

It's quite annoying to be blocked by flaky tests in several PRs. This PR disables them. The tests come from 3 PRs I'm recently watching:
https://github.com/apache/spark/pull/28526
https://github.com/apache/spark/pull/28463
https://github.com/apache/spark/pull/28517

### Why are the changes needed?

To make PR builder more stable

### Does this PR introduce _any_ user-facing change?

no

### How was this patch tested?

N/A

Closes #28547 from cloud-fan/test.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-05-16 07:33:58 -07:00
Kent Yao 1d66085a93 [SPARK-31289][TEST][TEST-HIVE1.2] Eliminate org.apache.spark.sql.hive.thriftserver.CliSuite flakiness
### What changes were proposed in this pull request?

CliSuite seems to be flaky while using metastoreDir per test.
https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/120470/testReport/org.apache.spark.sql.hive.thriftserver/CliSuite/

https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/120470/testReport/junit/org.apache.spark.sql.hive.thriftserver/CliSuite/history/

According to the error stack trace in the failed test, the test failed to instantiate a hive metastore client because of derby requirements.
```scala
Caused by: ERROR XBM0A:
 The database directory '/home/jenkins/workspace/SparkPullRequestBuilder/target/tmp/spark-9249ce52-0a06-42b6-a3df-e6295e880df0' exists.
However, it does not contain the expected 'service.properties' file.
Perhaps Derby was brought down in the middle of creating this database.
You may want to delete this directory and try creating the database again.
```

The derby requires the metastore dir does not exist, but it does exist probably due to the test case before it failed to clear the metastore dir

In this PR, the metastore is shared across the tests of CliSuite except those explicitly asked a separated metastore env itself

### Why are the changes needed?

CliSuite seems to be flaky while using metastoreDir per test.
 To eliminate test flakiness
### Does this PR introduce any user-facing change?

no
### How was this patch tested?

modified test

Closes #28055 from yaooqinn/clisuite.

Authored-by: Kent Yao <yaooqinn@hotmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-05-16 09:11:21 +00:00
Yuanjian Li 86bd37f37e [SPARK-31663][SQL] Grouping sets with having clause returns the wrong result
### What changes were proposed in this pull request?
- Resolve the havingcondition with expanding the GROUPING SETS/CUBE/ROLLUP expressions together in `ResolveGroupingAnalytics`:
    - Change the operations resolving directions to top-down.
    - Try resolving the condition of the filter as though it is in the aggregate clause by reusing the function in `ResolveAggregateFunctions`
    - Push the aggregate expressions into the aggregate which contains the expanded operations.
- Use UnresolvedHaving for all having clause.

### Why are the changes needed?
Correctness bug fix. See the demo and analysis in SPARK-31663.

### Does this PR introduce _any_ user-facing change?
Yes, correctness bug fix for HAVING with GROUPING SETS.

### How was this patch tested?
New UTs added.

Closes #28501 from xuanyuanking/SPARK-31663.

Authored-by: Yuanjian Li <xyliyuanjian@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-05-16 04:37:18 +00:00
Dongjoon Hyun 7ab167a995
Revert "[SPARK-31235][FOLLOWUP][TESTS][TEST-HADOOP3.2] Fix test "specify a more specific type for the ap…"
This reverts commit c1801fd6da.
2020-05-15 10:34:21 -07:00
yi.wu d8b001fa87 [SPARK-31620][SQL] Fix reference binding failure in case of an final agg contains subquery
### What changes were proposed in this pull request?

Instead of using `child.output` directly, we should use `inputAggBufferAttributes` from the current agg expression  for `Final` and `PartialMerge` aggregates to bind references for their `mergeExpression`.

### Why are the changes needed?

When planning aggregates, the partial aggregate uses agg fucs' `inputAggBufferAttributes` as its output, see https://github.com/apache/spark/blob/v3.0.0-rc1/sql/core/src/main/scala/org/apache/spark/sql/execution/aggregate/AggUtils.scala#L105

For final `HashAggregateExec`, we need to bind the `DeclarativeAggregate.mergeExpressions` with the output of the partial aggregate operator, see https://github.com/apache/spark/blob/v3.0.0-rc1/sql/core/src/main/scala/org/apache/spark/sql/execution/aggregate/HashAggregateExec.scala#L348

This is usually fine. However, if we copy the agg func somehow after agg planning, like `PlanSubqueries`, the `DeclarativeAggregate` will be replaced by a new instance with new `inputAggBufferAttributes` and `mergeExpressions`. Then we can't bind the `mergeExpressions` with the output of the partial aggregate operator, as it uses the `inputAggBufferAttributes` of the original `DeclarativeAggregate` before copy.

Note that, `ImperativeAggregate` doesn't have this problem, as we don't need to bind its `mergeExpressions`. It has a different mechanism to access buffer values, via `mutableAggBufferOffset` and `inputAggBufferOffset`.

### Does this PR introduce _any_ user-facing change?

Yes, user hit error previously but run query successfully after this change.

### How was this patch tested?

Added a regression test.

Closes #28496 from Ngone51/spark-31620.

Authored-by: yi.wu <yi.wu@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-05-15 15:36:28 +00:00
Huaxin Gao 194ac3be8b [SPARK-31708][ML][DOCS] Add docs and examples for ANOVASelector and FValueSelector
### What changes were proposed in this pull request?
Add docs and examples for ANOVASelector and FValueSelector

### Why are the changes needed?
Complete the implementation of ANOVASelector and FValueSelector

### Does this PR introduce _any_ user-facing change?
Yes

<img width="850" alt="Screen Shot 2020-05-13 at 5 17 44 PM" src="https://user-images.githubusercontent.com/13592258/81878703-b4f94480-953d-11ea-9166-da3c64852b90.png">

<img width="850" alt="Screen Shot 2020-05-13 at 5 05 15 PM" src="https://user-images.githubusercontent.com/13592258/81878600-6055c980-953d-11ea-8b24-09c31647139b.png">

<img width="850" alt="Screen Shot 2020-05-13 at 5 06 06 PM" src="https://user-images.githubusercontent.com/13592258/81878603-621f8d00-953d-11ea-9447-39913ccc067d.png">

<img width="850" alt="Screen Shot 2020-05-13 at 5 06 21 PM" src="https://user-images.githubusercontent.com/13592258/81878606-65b31400-953d-11ea-9d76-51859266d1a8.png">

<img width="850" alt="Screen Shot 2020-05-13 at 5 07 10 PM" src="https://user-images.githubusercontent.com/13592258/81878611-69df3180-953d-11ea-8618-23a2a6cfd730.png">

<img width="850" alt="Screen Shot 2020-05-13 at 5 07 33 PM" src="https://user-images.githubusercontent.com/13592258/81878620-6cda2200-953d-11ea-9c46-da763328364e.png">

<img width="850" alt="Screen Shot 2020-05-13 at 5 07 47 PM" src="https://user-images.githubusercontent.com/13592258/81878625-6f3c7c00-953d-11ea-9d11-2281b33a0bd8.png">

<img width="851" alt="Screen Shot 2020-05-13 at 5 19 35 PM" src="https://user-images.githubusercontent.com/13592258/81878882-13bebe00-953e-11ea-9776-288bac97d93f.png">

<img width="850" alt="Screen Shot 2020-05-13 at 5 08 42 PM" src="https://user-images.githubusercontent.com/13592258/81878637-76638a00-953d-11ea-94b0-dc9bc85ae2b7.png">

<img width="850" alt="Screen Shot 2020-05-13 at 5 09 01 PM" src="https://user-images.githubusercontent.com/13592258/81878640-79f71100-953d-11ea-9a66-b27f9482fbd3.png">

<img width="850" alt="Screen Shot 2020-05-13 at 5 09 50 PM" src="https://user-images.githubusercontent.com/13592258/81878644-7cf20180-953d-11ea-9142-9658c8e90986.png">

<img width="851" alt="Screen Shot 2020-05-13 at 5 10 06 PM" src="https://user-images.githubusercontent.com/13592258/81878653-81b6b580-953d-11ea-9dc2-8015095cf569.png">

<img width="850" alt="Screen Shot 2020-05-13 at 5 10 59 PM" src="https://user-images.githubusercontent.com/13592258/81878658-854a3c80-953d-11ea-8dc9-217aa749fd00.png">

<img width="850" alt="Screen Shot 2020-05-13 at 5 11 27 PM" src="https://user-images.githubusercontent.com/13592258/81878659-87ac9680-953d-11ea-8c6b-74ab76748e4a.png">

<img width="850" alt="Screen Shot 2020-05-13 at 5 14 54 PM" src="https://user-images.githubusercontent.com/13592258/81878664-8b401d80-953d-11ea-9ee1-05f6677e263c.png">

<img width="850" alt="Screen Shot 2020-05-13 at 5 15 17 PM" src="https://user-images.githubusercontent.com/13592258/81878669-8da27780-953d-11ea-8216-77eb8bb7e091.png">

### How was this patch tested?
Manually build and check

Closes #28524 from huaxingao/examples.

Authored-by: Huaxin Gao <huaxing@us.ibm.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2020-05-15 09:59:14 -05:00
Dongjoon Hyun 5d90886523
[SPARK-31716][SQL] Use fallback versions in HiveExternalCatalogVersionsSuite
# What changes were proposed in this pull request?

This PR aims to provide a fallback version instead of `Nil` in `HiveExternalCatalogVersionsSuite`. The provided fallback Spark versions recovers Jenkins jobs instead of failing.

### Why are the changes needed?

Currently, `HiveExternalCatalogVersionsSuite` is aborted in all Jenkins jobs except JDK11 Jenkins jobs which don't have old Spark releases supporting JDK11.
```
HiveExternalCatalogVersionsSuite:
org.apache.spark.sql.hive.HiveExternalCatalogVersionsSuite *** ABORTED ***
  Exception encountered when invoking run on a nested suite - Fail to get the lates Spark versions to test. (HiveExternalCatalogVersionsSuite.scala:180)
```

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Pass the Jenkins

Closes #28536 from dongjoon-hyun/SPARK-HiveExternalCatalogVersionsSuite.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-05-15 00:30:25 -07:00
Kent Yao 503faa24d3 [SPARK-31715][SQL][TEST] Fix flaky SparkSQLEnvSuite that sometimes varies single derby instance standard
### What changes were proposed in this pull request?

https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/122622/testReport/junit/org.apache.spark.sql.hive.thriftserver/SparkSQLEnvSuite/SPARK_29604_external_listeners_should_be_initialized_with_Spark_classloader/history/?start=25

According to the test report history of SparkSQLEnvSuite,this test fails frequently which is caused by single derby instance restriction.

```java
Caused by: sbt.ForkMain$ForkError: org.apache.derby.iapi.error.StandardException: Another instance of Derby may have already booted the database /home/jenkins/workspace/SparkPullRequestBuilder/sql/hive-thriftserver/metastore_db.
	at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
	at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.privGetJBMSLockOnDB(Unknown Source)
	at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.run(Unknown Source)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.getJBMSLockOnDB(Unknown Source)
	at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.boot(Unknown Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
	at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
	at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
	at org.apache.derby.impl.store.raw.RawStore.boot(Unknown Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
	at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
	at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
	at org.apache.derby.impl.store.access.RAMAccessManager.boot(Unknown Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
	at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
	at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
	at org.apache.derby.impl.db.BasicDatabase.bootStore(Unknown Source)
	at org.apache.derby.impl.db.BasicDatabase.boot(Unknown Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
	at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.bootService(Unknown Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.startProviderService(Unknown Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.findProviderAndStartService(Unknown Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.startPersistentService(Unknown Source)
	at org.apache.derby.iapi.services.monitor.Monitor.startPersistentService(Unknown Source)
	... 138 more
```

This PR adds a separate directory to locate the metastore_db for this test which runs in a dedicated JVM.

Besides, diable the UI for the potential race on `spark.ui.port` which may also let the test case become flaky.

### Why are the changes needed?
test fix

### Does this PR introduce _any_ user-facing change?
NO

### How was this patch tested?
SparkSQLEnvSuite itself.

Closes #28537 from yaooqinn/SPARK-31715.

Authored-by: Kent Yao <yaooqinn@hotmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-05-15 06:36:34 +00:00
Max Gekk c7ce37dfa7 [SPARK-31712][SQL][TESTS] Check casting timestamps before the epoch to Byte/Short/Int/Long types
### What changes were proposed in this pull request?
Added tests to check casting timestamps before 1970-01-01 00:00:00Z to ByteType, ShortType, IntegerType and LongType in ansi and non-ansi modes.

### Why are the changes needed?
To improve test coverage and prevent errors while modifying the CAST expression code.

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
By running the modified test suites:
```
$ ./build/sbt "test:testOnly *CastSuite"
```

Closes #28531 from MaxGekk/test-cast-timestamp-to-byte.

Authored-by: Max Gekk <max.gekk@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-05-15 04:24:58 +00:00
Dongjoon Hyun cd5fbcf9a0
[SPARK-31713][INFRA] Make test-dependencies.sh detect version string correctly
### What changes were proposed in this pull request?

This PR makes `test-dependencies.sh` detect the version string correctly by ignoring all the other lines.

### Why are the changes needed?

Currently, all SBT jobs are broken like the following.
- https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-branch-3.0-test-sbt-hadoop-3.2-hive-2.3/476/console
```
[error] running /home/jenkins/workspace/spark-branch-3.0-test-sbt-hadoop-3.2-hive-2.3/dev/test-dependencies.sh ; received return code 1
Build step 'Execute shell' marked build as failure
```

The reason is that the script detects the old version like `Falling back to archive.apache.org to download Maven 3.1.0-SNAPSHOT` when `build/mvn` did fallback.

Specifically, in the script, `OLD_VERSION` became `Falling back to archive.apache.org to download Maven 3.1.0-SNAPSHOT` instead of `3.1.0-SNAPSHOT` if build/mvn did fallback. Then, `pom.xml` file is corrupted like the following at the end and the exit code become `1` instead of `0`. It causes Jenkins jobs fails
```
-    <version>3.1.0-SNAPSHOT</version>
+    <version>Falling</version>
```

**NO FALLBACK**
```
$ build/mvn -q -Dexec.executable="echo" -Dexec.args='${project.version}' --non-recursive org.codehaus.mojo:exec-maven-plugin:1.6.0:exec
Using `mvn` from path: /Users/dongjoon/APACHE/spark-merge/build/apache-maven-3.6.3/bin/mvn
3.1.0-SNAPSHOT
```

**FALLBACK**
```
$ build/mvn -q -Dexec.executable="echo" -Dexec.args='${project.version}' --non-recursive org.codehaus.mojo:exec-maven-plugin:1.6.0:exec
Falling back to archive.apache.org to download Maven
Using `mvn` from path: /Users/dongjoon/APACHE/spark-merge/build/apache-maven-3.6.3/bin/mvn
3.1.0-SNAPSHOT
```

**In the script**
```
$ echo $(build/mvn -q -Dexec.executable="echo" -Dexec.args='${project.version}' --non-recursive org.codehaus.mojo:exec-maven-plugin:1.6.0:exec)
Using `mvn` from path: /Users/dongjoon/APACHE/spark-merge/build/apache-maven-3.6.3/bin/mvn
Falling back to archive.apache.org to download Maven 3.1.0-SNAPSHOT
```

This PR will prevent irrelevant logs like `Falling back to archive.apache.org to download Maven`.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Pass the PR Builder.

Closes #28532 from dongjoon-hyun/SPARK-31713.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-05-14 19:28:25 -07:00
Dongjoon Hyun bbb62c5405
Revert "[SPARK-31387] Handle unknown operation/session ID in HiveThriftServer2Listener"
This reverts commit 6994c64efd.
2020-05-14 12:01:03 -07:00
Dongjoon Hyun 7ce3f76af6
[SPARK-31696][DOCS][FOLLOWUP] Update version in documentation
# What changes were proposed in this pull request?

This PR is a follow-up to fix a version of configuration document.

### Why are the changes needed?

The original PR is backported to branch-3.0.

### Does this PR introduce _any_ user-facing change?

Yes.

### How was this patch tested?

Manual.

Closes #28530 from dongjoon-hyun/SPARK-31696-2.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-05-14 10:25:22 -07:00
Huaxin Gao e10516ae63 [SPARK-31681][ML][PYSPARK] Python multiclass logistic regression evaluate should return LogisticRegressionSummary
### What changes were proposed in this pull request?
Return LogisticRegressionSummary for multiclass logistic regression evaluate in PySpark

### Why are the changes needed?
Currently we have
```
    since("2.0.0")
    def evaluate(self, dataset):
        if not isinstance(dataset, DataFrame):
            raise ValueError("dataset must be a DataFrame but got %s." % type(dataset))
        java_blr_summary = self._call_java("evaluate", dataset)
        return BinaryLogisticRegressionSummary(java_blr_summary)
```
we should return LogisticRegressionSummary for multiclass logistic regression

### Does this PR introduce _any_ user-facing change?
Yes
return LogisticRegressionSummary instead of BinaryLogisticRegressionSummary for multiclass logistic regression in Python

### How was this patch tested?
unit test

Closes #28503 from huaxingao/lr_summary.

Authored-by: Huaxin Gao <huaxing@us.ibm.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2020-05-14 10:54:35 -05:00
Weichen Xu b2300fca1e [SPARK-31676][ML] QuantileDiscretizer raise error parameter splits given invalid value (splits array includes -0.0 and 0.0)
### What changes were proposed in this pull request?

In QuantileDiscretizer.getDistinctSplits, before invoking distinct, normalize all -0.0 and 0.0 to be 0.0
```
    for (i <- 0 until splits.length) {
      if (splits(i) == -0.0) {
        splits(i) = 0.0
      }
    }
```
### Why are the changes needed?
Fix bug.

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
Unit test.

#### Manually test:

~~~scala
import scala.util.Random
val rng = new Random(3)

val a1 = Array.tabulate(200)(_=>rng.nextDouble * 2.0 - 1.0) ++ Array.fill(20)(0.0) ++ Array.fill(20)(-0.0)

import spark.implicits._
val df1 = sc.parallelize(a1, 2).toDF("id")

import org.apache.spark.ml.feature.QuantileDiscretizer
val qd = new QuantileDiscretizer().setInputCol("id").setOutputCol("out").setNumBuckets(200).setRelativeError(0.0)

val model = qd.fit(df1) // will raise error in spark master.
~~~

### Explain
scala `0.0 == -0.0` is True but `0.0.hashCode == -0.0.hashCode()` is False. This break the contract between equals() and hashCode() If two objects are equal, then they must have the same hash code.

And array.distinct will rely on elem.hashCode so it leads to this error.

Test code on distinct
```
import scala.util.Random
val rng = new Random(3)

val a1 = Array.tabulate(200)(_=>rng.nextDouble * 2.0 - 1.0) ++ Array.fill(20)(0.0) ++ Array.fill(20)(-0.0)
a1.distinct.sorted.foreach(x => print(x.toString + "\n"))
```

Then you will see output like:
```
...
-0.009292684662246975
-0.0033280686465135823
-0.0
0.0
0.0022219556032221366
0.02217419561977274
...
```

Closes #28498 from WeichenXu123/SPARK-31676.

Authored-by: Weichen Xu <weichen.xu@databricks.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2020-05-14 09:24:40 -05:00