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3997 commits

Author SHA1 Message Date
hyukjinkwon 5cd8ea99f0 [SPARK-21779][PYTHON] Simpler DataFrame.sample API in Python
## What changes were proposed in this pull request?

This PR make `DataFrame.sample(...)` can omit `withReplacement` defaulting `False`, consistently with equivalent Scala / Java API.

In short, the following examples are allowed:

```python
>>> df = spark.range(10)
>>> df.sample(0.5).count()
7
>>> df.sample(fraction=0.5).count()
3
>>> df.sample(0.5, seed=42).count()
5
>>> df.sample(fraction=0.5, seed=42).count()
5
```

In addition, this PR also adds some type checking logics as below:

```python
>>> df = spark.range(10)
>>> df.sample().count()
...
TypeError: withReplacement (optional), fraction (required) and seed (optional) should be a bool, float and number; however, got [].
>>> df.sample(True).count()
...
TypeError: withReplacement (optional), fraction (required) and seed (optional) should be a bool, float and number; however, got [<type 'bool'>].
>>> df.sample(42).count()
...
TypeError: withReplacement (optional), fraction (required) and seed (optional) should be a bool, float and number; however, got [<type 'int'>].
>>> df.sample(fraction=False, seed="a").count()
...
TypeError: withReplacement (optional), fraction (required) and seed (optional) should be a bool, float and number; however, got [<type 'bool'>, <type 'str'>].
>>> df.sample(seed=[1]).count()
...
TypeError: withReplacement (optional), fraction (required) and seed (optional) should be a bool, float and number; however, got [<type 'list'>].
>>> df.sample(withReplacement="a", fraction=0.5, seed=1)
...
TypeError: withReplacement (optional), fraction (required) and seed (optional) should be a bool, float and number; however, got [<type 'str'>, <type 'float'>, <type 'int'>].
```

## How was this patch tested?

Manually tested, unit tests added in doc tests and manually checked the built documentation for Python.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #18999 from HyukjinKwon/SPARK-21779.
2017-09-01 13:01:23 +09:00
Bryan Cutler 501370d9d5 [SPARK-21583][HOTFIX] Removed intercept in test causing failures
Removing a check in the ColumnarBatchSuite that depended on a Java assertion.  This assertion is being compiled out in the Maven builds causing the test to fail.  This part of the test is not specifically from to the functionality that is being tested here.

Author: Bryan Cutler <cutlerb@gmail.com>

Closes #19098 from BryanCutler/hotfix-ColumnarBatchSuite-assertion.
2017-08-31 11:32:10 -07:00
Jacek Laskowski 9696580c33 [SPARK-21886][SQL] Use SparkSession.internalCreateDataFrame to create…
… Dataset with LogicalRDD logical operator

## What changes were proposed in this pull request?

Reusing `SparkSession.internalCreateDataFrame` wherever possible (to cut dups)

## How was this patch tested?

Local build and waiting for Jenkins

Author: Jacek Laskowski <jacek@japila.pl>

Closes #19095 from jaceklaskowski/SPARK-21886-internalCreateDataFrame.
2017-08-31 09:44:29 -07:00
gatorsmile 19b0240d42 [SPARK-21878][SQL][TEST] Create SQLMetricsTestUtils
## What changes were proposed in this pull request?
Creates `SQLMetricsTestUtils` for the utility functions of both Hive-specific and the other SQLMetrics test cases.

Also, move two SQLMetrics test cases from sql/hive to sql/core.

## How was this patch tested?
N/A

Author: gatorsmile <gatorsmile@gmail.com>

Closes #19092 from gatorsmile/rewriteSQLMetrics.
2017-08-31 09:16:26 -07:00
Bryan Cutler 964b507c75 [SPARK-21583][SQL] Create a ColumnarBatch from ArrowColumnVectors
## What changes were proposed in this pull request?

This PR allows the creation of a `ColumnarBatch` from `ReadOnlyColumnVectors` where previously a columnar batch could only allocate vectors internally.  This is useful for using `ArrowColumnVectors` in a batch form to do row-based iteration.  Also added `ArrowConverter.fromPayloadIterator` which converts `ArrowPayload` iterator to `InternalRow` iterator and uses a `ColumnarBatch` internally.

## How was this patch tested?

Added a new unit test for creating a `ColumnarBatch` with `ReadOnlyColumnVectors` and a test to verify the roundtrip of rows -> ArrowPayload -> rows, using `toPayloadIterator` and `fromPayloadIterator`.

Author: Bryan Cutler <cutlerb@gmail.com>

Closes #18787 from BryanCutler/arrow-ColumnarBatch-support-SPARK-21583.
2017-08-31 13:08:52 +09:00
Andrew Ash 313c6ca435 [SPARK-21875][BUILD] Fix Java style bugs
## What changes were proposed in this pull request?

Fix Java code style so `./dev/lint-java` succeeds

## How was this patch tested?

Run `./dev/lint-java`

Author: Andrew Ash <andrew@andrewash.com>

Closes #19088 from ash211/spark-21875-lint-java.
2017-08-31 09:26:11 +09:00
Dongjoon Hyun d8f4540863 [SPARK-21839][SQL] Support SQL config for ORC compression
## What changes were proposed in this pull request?

This PR aims to support `spark.sql.orc.compression.codec` like Parquet's `spark.sql.parquet.compression.codec`. Users can use SQLConf to control ORC compression, too.

## How was this patch tested?

Pass the Jenkins with new and updated test cases.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #19055 from dongjoon-hyun/SPARK-21839.
2017-08-31 08:16:58 +09:00
caoxuewen 235d28333c [MINOR][SQL][TEST] Test shuffle hash join while is not expected
## What changes were proposed in this pull request?

igore("shuffle hash join") is to shuffle hash join to test _case class ShuffledHashJoinExec_.
But when you 'ignore' -> 'test', the test is _case class BroadcastHashJoinExec_.

Before modified,  as a result of:canBroadcast is true.
Print information in _canBroadcast(plan: LogicalPlan)_
```
canBroadcast plan.stats.sizeInBytes:6710880
canBroadcast conf.autoBroadcastJoinThreshold:10000000
```

After modified, plan.stats.sizeInBytes is 11184808.
Print information in _canBuildLocalHashMap(plan: LogicalPlan)_
and _muchSmaller(a: LogicalPlan, b: LogicalPlan)_ :

```
canBuildLocalHashMap plan.stats.sizeInBytes:11184808
canBuildLocalHashMap conf.autoBroadcastJoinThreshold:10000000
canBuildLocalHashMap conf.numShufflePartitions:2
```
```
muchSmaller a.stats.sizeInBytes * 3:33554424
muchSmaller b.stats.sizeInBytes:33554432
```
## How was this patch tested?

existing test case.

Author: caoxuewen <cao.xuewen@zte.com.cn>

Closes #19069 from heary-cao/shuffle_hash_join.
2017-08-30 10:10:24 -07:00
gatorsmile 32d6d9d720 Revert "[SPARK-21845][SQL] Make codegen fallback of expressions configurable"
This reverts commit 3d0e174244.
2017-08-30 09:08:40 -07:00
gatorsmile 3d0e174244 [SPARK-21845][SQL] Make codegen fallback of expressions configurable
## What changes were proposed in this pull request?
We should make codegen fallback of expressions configurable. So far, it is always on. We might hide it when our codegen have compilation bugs. Thus, we should also disable the codegen fallback when running test cases.

## How was this patch tested?
Added test cases

Author: gatorsmile <gatorsmile@gmail.com>

Closes #19062 from gatorsmile/fallbackCodegen.
2017-08-29 20:59:01 -07:00
Wenchen Fan 6327ea570b [SPARK-21255][SQL] simplify encoder for java enum
## What changes were proposed in this pull request?

This is a follow-up for https://github.com/apache/spark/pull/18488, to simplify the code.

The major change is, we should map java enum to string type, instead of a struct type with a single string field.

## How was this patch tested?

existing tests

Author: Wenchen Fan <wenchen@databricks.com>

Closes #19066 from cloud-fan/fix.
2017-08-29 09:15:59 -07:00
Wang Gengliang 8fcbda9c93 [SPARK-21848][SQL] Add trait UserDefinedExpression to identify user-defined functions
## What changes were proposed in this pull request?

Add trait UserDefinedExpression to identify user-defined functions.
UDF can be expensive. In optimizer we may need to avoid executing UDF multiple times.
E.g.
```scala
table.select(UDF as 'a).select('a, ('a + 1) as 'b)
```
If UDF is expensive in this case, optimizer should not collapse the project to
```scala
table.select(UDF as 'a, (UDF+1) as 'b)
```

Currently UDF classes like PythonUDF, HiveGenericUDF are not defined in catalyst.
This PR is to add a new trait to make it easier to identify user-defined functions.

## How was this patch tested?

Unit test

Author: Wang Gengliang <ltnwgl@gmail.com>

Closes #19064 from gengliangwang/UDFType.
2017-08-29 09:08:59 -07:00
Takuya UESHIN 32fa0b8141 [SPARK-21781][SQL] Modify DataSourceScanExec to use concrete ColumnVector type.
## What changes were proposed in this pull request?

As mentioned at https://github.com/apache/spark/pull/18680#issuecomment-316820409, when we have more `ColumnVector` implementations, it might (or might not) have huge performance implications because it might disable inlining, or force virtual dispatches.

As for read path, one of the major paths is the one generated by `ColumnBatchScan`. Currently it refers `ColumnVector` so the penalty will be bigger as we have more classes, but we can know the concrete type from its usage, e.g. vectorized Parquet reader uses `OnHeapColumnVector`. We can use the concrete type in the generated code directly to avoid the penalty.

## How was this patch tested?

Existing tests.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #18989 from ueshin/issues/SPARK-21781.
2017-08-29 20:16:45 +08:00
iamhumanbeing 07142cf6dc [SPARK-21843] testNameNote should be "(minNumPostShufflePartitions: 5)"
Signed-off-by: iamhumanbeing <iamhumanbeinggmail.com>

## What changes were proposed in this pull request?

testNameNote = "(minNumPostShufflePartitions: 3) is not correct.
it should be "(minNumPostShufflePartitions: " + numPartitions + ")" in ExchangeCoordinatorSuite

## How was this patch tested?

unit tests

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: iamhumanbeing <iamhumanbeing@gmail.com>

Closes #19058 from iamhumanbeing/testnote.
2017-08-27 08:23:57 +01:00
Sean Owen 1a598d717c [SPARK-21837][SQL][TESTS] UserDefinedTypeSuite Local UDTs not actually testing what it intends
## What changes were proposed in this pull request?

Adjust Local UDTs test to assert about results, and fix index of vector column. See JIRA for details.

## How was this patch tested?

Existing tests.

Author: Sean Owen <sowen@cloudera.com>

Closes #19053 from srowen/SPARK-21837.
2017-08-25 13:29:40 -07:00
vinodkc 51620e288b [SPARK-21756][SQL] Add JSON option to allow unquoted control characters
## What changes were proposed in this pull request?

This patch adds allowUnquotedControlChars option in JSON data source to allow JSON Strings to contain unquoted control characters (ASCII characters with value less than 32, including tab and line feed characters)

## How was this patch tested?
Add new test cases

Author: vinodkc <vinod.kc.in@gmail.com>

Closes #19008 from vinodkc/br_fix_SPARK-21756.
2017-08-25 10:18:03 -07:00
Sean Owen de7af295c2 [MINOR][BUILD] Fix build warnings and Java lint errors
## What changes were proposed in this pull request?

Fix build warnings and Java lint errors. This just helps a bit in evaluating (new) warnings in another PR I have open.

## How was this patch tested?

Existing tests

Author: Sean Owen <sowen@cloudera.com>

Closes #19051 from srowen/JavaWarnings.
2017-08-25 16:07:13 +01:00
mike 7d16776d28 [SPARK-21255][SQL][WIP] Fixed NPE when creating encoder for enum
## What changes were proposed in this pull request?

Fixed NPE when creating encoder for enum.

When you try to create an encoder for Enum type (or bean with enum property) via Encoders.bean(...), it fails with NullPointerException at TypeToken:495.
I did a little research and it turns out, that in JavaTypeInference following code
```
  def getJavaBeanReadableProperties(beanClass: Class[_]): Array[PropertyDescriptor] = {
    val beanInfo = Introspector.getBeanInfo(beanClass)
    beanInfo.getPropertyDescriptors.filterNot(_.getName == "class")
      .filter(_.getReadMethod != null)
  }
```
filters out properties named "class", because we wouldn't want to serialize that. But enum types have another property of type Class named "declaringClass", which we are trying to inspect recursively. Eventually we try to inspect ClassLoader class, which has property "defaultAssertionStatus" with no read method, which leads to NPE at TypeToken:495.

I added property name "declaringClass" to filtering to resolve this.

## How was this patch tested?
Unit test in JavaDatasetSuite which creates an encoder for enum

Author: mike <mike0sv@gmail.com>
Author: Mikhail Sveshnikov <mike0sv@gmail.com>

Closes #18488 from mike0sv/enum-support.
2017-08-25 07:22:34 +01:00
Herman van Hovell 05af2de0fd [SPARK-21830][SQL] Bump ANTLR version and fix a few issues.
## What changes were proposed in this pull request?
This PR bumps the ANTLR version to 4.7, and fixes a number of small parser related issues uncovered by the bump.

The main reason for upgrading is that in some cases the current version of ANTLR (4.5) can exhibit exponential slowdowns if it needs to parse boolean predicates. For example the following query will take forever to parse:
```sql
SELECT *
FROM RANGE(1000)
WHERE
TRUE
AND NOT upper(DESCRIPTION) LIKE '%FOO%'
AND NOT upper(DESCRIPTION) LIKE '%FOO%'
AND NOT upper(DESCRIPTION) LIKE '%FOO%'
AND NOT upper(DESCRIPTION) LIKE '%FOO%'
AND NOT upper(DESCRIPTION) LIKE '%FOO%'
AND NOT upper(DESCRIPTION) LIKE '%FOO%'
AND NOT upper(DESCRIPTION) LIKE '%FOO%'
AND NOT upper(DESCRIPTION) LIKE '%FOO%'
AND NOT upper(DESCRIPTION) LIKE '%FOO%'
AND NOT upper(DESCRIPTION) LIKE '%FOO%'
AND NOT upper(DESCRIPTION) LIKE '%FOO%'
AND NOT upper(DESCRIPTION) LIKE '%FOO%'
AND NOT upper(DESCRIPTION) LIKE '%FOO%'
AND NOT upper(DESCRIPTION) LIKE '%FOO%'
AND NOT upper(DESCRIPTION) LIKE '%FOO%'
AND NOT upper(DESCRIPTION) LIKE '%FOO%'
AND NOT upper(DESCRIPTION) LIKE '%FOO%'
AND NOT upper(DESCRIPTION) LIKE '%FOO%'
```

This is caused by a know bug in ANTLR (https://github.com/antlr/antlr4/issues/994), which was fixed in version 4.6.

## How was this patch tested?
Existing tests.

Author: Herman van Hovell <hvanhovell@databricks.com>

Closes #19042 from hvanhovell/SPARK-21830.
2017-08-24 16:33:55 -07:00
Shixiong Zhu d3abb36990 [SPARK-21788][SS] Handle more exceptions when stopping a streaming query
## What changes were proposed in this pull request?

Add more cases we should view as a normal query stop rather than a failure.

## How was this patch tested?

The new unit tests.

Author: Shixiong Zhu <zsxwing@gmail.com>

Closes #18997 from zsxwing/SPARK-21788.
2017-08-24 10:23:59 -07:00
Wenchen Fan 2dd37d827f [SPARK-21826][SQL] outer broadcast hash join should not throw NPE
## What changes were proposed in this pull request?

This is a bug introduced by https://github.com/apache/spark/pull/11274/files#diff-7adb688cbfa583b5711801f196a074bbL274 .

Non-equal join condition should only be applied when the equal-join condition matches.

## How was this patch tested?

regression test

Author: Wenchen Fan <wenchen@databricks.com>

Closes #19036 from cloud-fan/bug.
2017-08-24 16:44:12 +02:00
Liang-Chi Hsieh 183d4cb71f [SPARK-21759][SQL] In.checkInputDataTypes should not wrongly report unresolved plans for IN correlated subquery
## What changes were proposed in this pull request?

With the check for structural integrity proposed in SPARK-21726, it is found that the optimization rule `PullupCorrelatedPredicates` can produce unresolved plans.

For a correlated IN query looks like:

    SELECT t1.a FROM t1
    WHERE
    t1.a IN (SELECT t2.c
            FROM t2
            WHERE t1.b < t2.d);

The query plan might look like:

    Project [a#0]
    +- Filter a#0 IN (list#4 [b#1])
       :  +- Project [c#2]
       :     +- Filter (outer(b#1) < d#3)
       :        +- LocalRelation <empty>, [c#2, d#3]
       +- LocalRelation <empty>, [a#0, b#1]

After `PullupCorrelatedPredicates`, it produces query plan like:

    'Project [a#0]
    +- 'Filter a#0 IN (list#4 [(b#1 < d#3)])
       :  +- Project [c#2, d#3]
       :     +- LocalRelation <empty>, [c#2, d#3]
       +- LocalRelation <empty>, [a#0, b#1]

Because the correlated predicate involves another attribute `d#3` in subquery, it has been pulled out and added into the `Project` on the top of the subquery.

When `list` in `In` contains just one `ListQuery`, `In.checkInputDataTypes` checks if the size of `value` expressions matches the output size of subquery. In the above example, there is only `value` expression and the subquery output has two attributes `c#2, d#3`, so it fails the check and `In.resolved` returns `false`.

We should not let `In.checkInputDataTypes` wrongly report unresolved plans to fail the structural integrity check.

## How was this patch tested?

Added test.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #18968 from viirya/SPARK-21759.
2017-08-24 21:46:58 +08:00
Takuya UESHIN 9e33954ddf [SPARK-21745][SQL] Refactor ColumnVector hierarchy to make ColumnVector read-only and to introduce WritableColumnVector.
## What changes were proposed in this pull request?

This is a refactoring of `ColumnVector` hierarchy and related classes.

1. make `ColumnVector` read-only
2. introduce `WritableColumnVector` with write interface
3. remove `ReadOnlyColumnVector`

## How was this patch tested?

Existing tests.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #18958 from ueshin/issues/SPARK-21745.
2017-08-24 21:13:44 +08:00
lufei 846bc61cf5 [MINOR][SQL] The comment of Class ExchangeCoordinator exist a typing and context error
## What changes were proposed in this pull request?

The given example in the comment of Class ExchangeCoordinator is exist four post-shuffle partitions,but the current comment is “three”.

## How was this patch tested?

Author: lufei <lu.fei80@zte.com.cn>

Closes #19028 from figo77/SPARK-21816.
2017-08-24 10:07:27 +01:00
Jose Torres 3c0c2d09ca [SPARK-21765] Set isStreaming on leaf nodes for streaming plans.
## What changes were proposed in this pull request?
All streaming logical plans will now have isStreaming set. This involved adding isStreaming as a case class arg in a few cases, since a node might be logically streaming depending on where it came from.

## How was this patch tested?

Existing unit tests - no functional change is intended in this PR.

Author: Jose Torres <joseph-torres@databricks.com>
Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #18973 from joseph-torres/SPARK-21765.
2017-08-22 19:07:43 -07:00
gatorsmile 01a8e46278 [SPARK-21769][SQL] Add a table-specific option for always respecting schemas inferred/controlled by Spark SQL
## What changes were proposed in this pull request?
For Hive-serde tables, we always respect the schema stored in Hive metastore, because the schema could be altered by the other engines that share the same metastore. Thus, we always trust the metastore-controlled schema for Hive-serde tables when the schemas are different (without considering the nullability and cases). However, in some scenarios, Hive metastore also could INCORRECTLY overwrite the schemas when the serde and Hive metastore built-in serde are different.

The proposed solution is to introduce a table-specific option for such scenarios. For a specific table, users can make Spark always respect Spark-inferred/controlled schema instead of trusting metastore-controlled schema. By default, we trust Hive metastore-controlled schema.

## How was this patch tested?
Added a cross-version test case

Author: gatorsmile <gatorsmile@gmail.com>

Closes #19003 from gatorsmile/respectSparkSchema.
2017-08-22 13:12:59 -07:00
gatorsmile 43d71d9659 [SPARK-21499][SQL] Support creating persistent function for Spark UDAF(UserDefinedAggregateFunction)
## What changes were proposed in this pull request?
This PR is to enable users to create persistent Scala UDAF (that extends UserDefinedAggregateFunction).

```SQL
CREATE FUNCTION myDoubleAvg AS 'test.org.apache.spark.sql.MyDoubleAvg'
```

Before this PR, Spark UDAF only can be registered through the API `spark.udf.register(...)`

## How was this patch tested?
Added test cases

Author: gatorsmile <gatorsmile@gmail.com>

Closes #18700 from gatorsmile/javaUDFinScala.
2017-08-22 13:01:35 -07:00
gatorsmile be72b157ea [SPARK-21803][TEST] Remove the HiveDDLCommandSuite
## What changes were proposed in this pull request?
We do not have any Hive-specific parser. It does not make sense to keep a parser-specific test suite `HiveDDLCommandSuite.scala` in the Hive package. This PR is to remove it.

## How was this patch tested?
N/A

Author: gatorsmile <gatorsmile@gmail.com>

Closes #19015 from gatorsmile/combineDDL.
2017-08-22 17:54:39 +08:00
Marcelo Vanzin 84b5b16ea6 [SPARK-21617][SQL] Store correct table metadata when altering schema in Hive metastore.
For Hive tables, the current "replace the schema" code is the correct
path, except that an exception in that path should result in an error, and
not in retrying in a different way.

For data source tables, Spark may generate a non-compatible Hive table;
but for that to work with Hive 2.1, the detection of data source tables needs
to be fixed in the Hive client, to also consider the raw tables used by code
such as `alterTableSchema`.

Tested with existing and added unit tests (plus internal tests with a 2.1 metastore).

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #18849 from vanzin/SPARK-21617.
2017-08-21 15:09:02 -07:00
Sean Owen b3a07526fe [SPARK-21718][SQL] Heavy log of type: "Skipping partition based on stats ..."
## What changes were proposed in this pull request?

Reduce 'Skipping partitions' message to debug

## How was this patch tested?

Existing tests

Author: Sean Owen <sowen@cloudera.com>

Closes #19010 from srowen/SPARK-21718.
2017-08-21 14:20:40 +02:00
Wenchen Fan 7880909c45 [SPARK-21743][SQL][FOLLOW-UP] top-most limit should not cause memory leak
## What changes were proposed in this pull request?

This is a follow-up of https://github.com/apache/spark/pull/18955 , to fix a bug that we break whole stage codegen for `Limit`.

## How was this patch tested?

existing tests.

Author: Wenchen Fan <wenchen@databricks.com>

Closes #18993 from cloud-fan/bug.
2017-08-18 11:19:22 -07:00
Masha Basmanova 23ea898080 [SPARK-21213][SQL] Support collecting partition-level statistics: rowCount and sizeInBytes
## What changes were proposed in this pull request?

Added support for ANALYZE TABLE [db_name].tablename PARTITION (partcol1[=val1], partcol2[=val2], ...) COMPUTE STATISTICS [NOSCAN] SQL command to calculate total number of rows and size in bytes for a subset of partitions. Calculated statistics are stored in Hive Metastore as user-defined properties attached to partition objects. Property names are the same as the ones used to store table-level statistics: spark.sql.statistics.totalSize and spark.sql.statistics.numRows.

When partition specification contains all partition columns with values, the command collects statistics for a single partition that matches the specification. When some partition columns are missing or listed without their values, the command collects statistics for all partitions which match a subset of partition column values specified.

For example, table t has 4 partitions with the following specs:

* Partition1: (ds='2008-04-08', hr=11)
* Partition2: (ds='2008-04-08', hr=12)
* Partition3: (ds='2008-04-09', hr=11)
* Partition4: (ds='2008-04-09', hr=12)

'ANALYZE TABLE t PARTITION (ds='2008-04-09', hr=11)' command will collect statistics only for partition 3.

'ANALYZE TABLE t PARTITION (ds='2008-04-09')' command will collect statistics for partitions 3 and 4.

'ANALYZE TABLE t PARTITION (ds, hr)' command will collect statistics for all four partitions.

When the optional parameter NOSCAN is specified, the command doesn't count number of rows and only gathers size in bytes.

The statistics gathered by ANALYZE TABLE command can be fetched using DESC EXTENDED [db_name.]tablename PARTITION command.

## How was this patch tested?

Added tests.

Author: Masha Basmanova <mbasmanova@fb.com>

Closes #18421 from mbasmanova/mbasmanova-analyze-partition.
2017-08-18 09:54:39 -07:00
Reynold Xin 07a2b8738e [SPARK-21778][SQL] Simpler Dataset.sample API in Scala / Java
## What changes were proposed in this pull request?
Dataset.sample requires a boolean flag withReplacement as the first argument. However, most of the time users simply want to sample some records without replacement. This ticket introduces a new sample function that simply takes in the fraction and seed.

## How was this patch tested?
Tested manually. Not sure yet if we should add a test case for just this wrapper ...

Author: Reynold Xin <rxin@databricks.com>

Closes #18988 from rxin/SPARK-21778.
2017-08-18 23:58:20 +09:00
Jen-Ming Chung 7ab951885f [SPARK-21677][SQL] json_tuple throws NullPointException when column is null as string type
## What changes were proposed in this pull request?
``` scala
scala> Seq(("""{"Hyukjin": 224, "John": 1225}""")).toDS.selectExpr("json_tuple(value, trim(null))").show()
...
java.lang.NullPointerException
	at ...
```

Currently the `null` field name will throw NullPointException. As a given field name null can't be matched with any field names in json, we just output null as its column value. This PR achieves it by returning a very unlikely column name `__NullFieldName` in evaluation of the field names.

## How was this patch tested?
Added unit test.

Author: Jen-Ming Chung <jenmingisme@gmail.com>

Closes #18930 from jmchung/SPARK-21677.
2017-08-17 15:59:45 -07:00
gatorsmile ae9e424792 [SQL][MINOR][TEST] Set spark.unsafe.exceptionOnMemoryLeak to true
## What changes were proposed in this pull request?
When running IntelliJ, we are unable to capture the exception of memory leak detection.
> org.apache.spark.executor.Executor: Managed memory leak detected

Explicitly setting `spark.unsafe.exceptionOnMemoryLeak` in SparkConf when building the SparkSession, instead of reading it from system properties.

## How was this patch tested?
N/A

Author: gatorsmile <gatorsmile@gmail.com>

Closes #18967 from gatorsmile/setExceptionOnMemoryLeak.
2017-08-17 13:00:37 -07:00
Wenchen Fan a45133b826 [SPARK-21743][SQL] top-most limit should not cause memory leak
## What changes were proposed in this pull request?

For top-most limit, we will use a special operator to execute it: `CollectLimitExec`.

`CollectLimitExec` will retrieve `n`(which is the limit) rows from each partition of the child plan output, see https://github.com/apache/spark/blob/v2.2.0/sql/core/src/main/scala/org/apache/spark/sql/execution/SparkPlan.scala#L311. It's very likely that we don't exhaust the child plan output.

This is fine when whole-stage-codegen is off, as child plan will release the resource via task completion listener. However, when whole-stage codegen is on, the resource can only be released if all output is consumed.

To fix this memory leak, one simple approach is, when `CollectLimitExec` retrieve `n` rows from child plan output, child plan output should only have `n` rows, then the output is exhausted and resource is released. This can be done by wrapping child plan with `LocalLimit`

## How was this patch tested?

a regression test

Author: Wenchen Fan <wenchen@databricks.com>

Closes #18955 from cloud-fan/leak.
2017-08-16 22:37:45 -07:00
10129659 1cce1a3b63 [SPARK-21603][SQL] The wholestage codegen will be much slower then that is closed when the function is too long
## What changes were proposed in this pull request?
Close the whole stage codegen when the function lines is longer than the maxlines which will be setted by
spark.sql.codegen.MaxFunctionLength parameter, because when the function is too long , it will not get the JIT  optimizing.
A benchmark test result is 10x slower when the generated function is too long :

ignore("max function length of wholestagecodegen") {
    val N = 20 << 15

    val benchmark = new Benchmark("max function length of wholestagecodegen", N)
    def f(): Unit = sparkSession.range(N)
      .selectExpr(
        "id",
        "(id & 1023) as k1",
        "cast(id & 1023 as double) as k2",
        "cast(id & 1023 as int) as k3",
        "case when id > 100 and id <= 200 then 1 else 0 end as v1",
        "case when id > 200 and id <= 300 then 1 else 0 end as v2",
        "case when id > 300 and id <= 400 then 1 else 0 end as v3",
        "case when id > 400 and id <= 500 then 1 else 0 end as v4",
        "case when id > 500 and id <= 600 then 1 else 0 end as v5",
        "case when id > 600 and id <= 700 then 1 else 0 end as v6",
        "case when id > 700 and id <= 800 then 1 else 0 end as v7",
        "case when id > 800 and id <= 900 then 1 else 0 end as v8",
        "case when id > 900 and id <= 1000 then 1 else 0 end as v9",
        "case when id > 1000 and id <= 1100 then 1 else 0 end as v10",
        "case when id > 1100 and id <= 1200 then 1 else 0 end as v11",
        "case when id > 1200 and id <= 1300 then 1 else 0 end as v12",
        "case when id > 1300 and id <= 1400 then 1 else 0 end as v13",
        "case when id > 1400 and id <= 1500 then 1 else 0 end as v14",
        "case when id > 1500 and id <= 1600 then 1 else 0 end as v15",
        "case when id > 1600 and id <= 1700 then 1 else 0 end as v16",
        "case when id > 1700 and id <= 1800 then 1 else 0 end as v17",
        "case when id > 1800 and id <= 1900 then 1 else 0 end as v18")
      .groupBy("k1", "k2", "k3")
      .sum()
      .collect()

    benchmark.addCase(s"codegen = F") { iter =>
      sparkSession.conf.set("spark.sql.codegen.wholeStage", "false")
      f()
    }

    benchmark.addCase(s"codegen = T") { iter =>
      sparkSession.conf.set("spark.sql.codegen.wholeStage", "true")
      sparkSession.conf.set("spark.sql.codegen.MaxFunctionLength", "10000")
      f()
    }

    benchmark.run()

    /*
    Java HotSpot(TM) 64-Bit Server VM 1.8.0_111-b14 on Windows 7 6.1
    Intel64 Family 6 Model 58 Stepping 9, GenuineIntel
    max function length of wholestagecodegen: Best/Avg Time(ms)    Rate(M/s)   Per Row(ns)   Relative
    ------------------------------------------------------------------------------------------------
    codegen = F                                    443 /  507          1.5         676.0       1.0X
    codegen = T                                   3279 / 3283          0.2        5002.6       0.1X
     */
  }

## How was this patch tested?
Run the unit test

Author: 10129659 <chen.yanshan@zte.com.cn>

Closes #18810 from eatoncys/codegen.
2017-08-16 09:12:20 -07:00
Xingbo Jiang 42b9eda80e [MINOR] Fix a typo in the method name UserDefinedFunction.asNonNullabe
## What changes were proposed in this pull request?

The method name `asNonNullabe` should be `asNonNullable`.

## How was this patch tested?

N/A

Author: Xingbo Jiang <xingbo.jiang@databricks.com>

Closes #18952 from jiangxb1987/typo.
2017-08-15 16:40:01 -07:00
Marcelo Vanzin 3f958a9992 [SPARK-21731][BUILD] Upgrade scalastyle to 0.9.
This version fixes a few issues in the import order checker; it provides
better error messages, and detects more improper ordering (thus the need
to change a lot of files in this patch). The main fix is that it correctly
complains about the order of packages vs. classes.

As part of the above, I moved some "SparkSession" import in ML examples
inside the "$example on$" blocks; that didn't seem consistent across
different source files to start with, and avoids having to add more on/off blocks
around specific imports.

The new scalastyle also seems to have a better header detector, so a few
license headers had to be updated to match the expected indentation.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #18943 from vanzin/SPARK-21731.
2017-08-15 13:59:00 -07:00
Wenchen Fan 14bdb25fd7 [SPARK-18464][SQL][FOLLOWUP] support old table which doesn't store schema in table properties
## What changes were proposed in this pull request?

This is a follow-up of https://github.com/apache/spark/pull/15900 , to fix one more bug:
When table schema is empty and need to be inferred at runtime, we should not resolve parent plans before the schema has been inferred, or the parent plans will be resolved against an empty schema and may get wrong result for something like `select *`

The fix logic is: introduce `UnresolvedCatalogRelation` as a placeholder. Then we replace it with `LogicalRelation` or `HiveTableRelation` during analysis, so that it's guaranteed that we won't resolve parent plans until the schema has been inferred.

## How was this patch tested?

regression test

Author: Wenchen Fan <wenchen@databricks.com>

Closes #18907 from cloud-fan/bug.
2017-08-15 09:04:56 -07:00
donnyzone bc9902587a [SPARK-19471][SQL] AggregationIterator does not initialize the generated result projection before using it
## What changes were proposed in this pull request?

This is a follow-up PR that moves the test case in PR-18920 (https://github.com/apache/spark/pull/18920) to DataFrameAggregateSuit.

## How was this patch tested?
unit test

Author: donnyzone <wellfengzhu@gmail.com>

Closes #18946 from DonnyZone/branch-19471-followingPR.
2017-08-15 08:51:18 -07:00
Shixiong Zhu 12411b5edf [SPARK-21732][SQL] Lazily init hive metastore client
## What changes were proposed in this pull request?

This PR changes the codes to lazily init hive metastore client so that we can create SparkSession without talking to the hive metastore sever.

It's pretty helpful when you set a hive metastore server but it's down. You can still start the Spark shell to debug.

## How was this patch tested?

The new unit test.

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #18944 from zsxwing/hive-lazy-init.
2017-08-14 23:46:52 -07:00
Shixiong Zhu 282f00b410 [SPARK-21696][SS] Fix a potential issue that may generate partial snapshot files
## What changes were proposed in this pull request?

Directly writing a snapshot file may generate a partial file. This PR changes it to write to a temp file then rename to the target file.

## How was this patch tested?

Jenkins.

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #18928 from zsxwing/SPARK-21696.
2017-08-14 15:06:55 -07:00
donnyzone fbc269252a [SPARK-19471][SQL] AggregationIterator does not initialize the generated result projection before using it
## What changes were proposed in this pull request?

Recently, we have also encountered such NPE issues in our production environment as described in:
https://issues.apache.org/jira/browse/SPARK-19471

This issue can be reproduced by the following examples:
` val df = spark.createDataFrame(Seq(("1", 1), ("1", 2), ("2", 3), ("2", 4))).toDF("x", "y")

//HashAggregate, SQLConf.WHOLESTAGE_CODEGEN_ENABLED.key=false
df.groupBy("x").agg(rand(),sum("y")).show()

//ObjectHashAggregate, SQLConf.WHOLESTAGE_CODEGEN_ENABLED.key=false
df.groupBy("x").agg(rand(),collect_list("y")).show()

//SortAggregate, SQLConf.WHOLESTAGE_CODEGEN_ENABLED.key=false &&SQLConf.USE_OBJECT_HASH_AGG.key=false
df.groupBy("x").agg(rand(),collect_list("y")).show()`
`

This PR is based on PR-16820(https://github.com/apache/spark/pull/16820) with test cases for all aggregation paths. We want to push it forward.

> When AggregationIterator generates result projection, it does not call the initialize method of the Projection class. This will cause a runtime NullPointerException when the projection involves nondeterministic expressions.

## How was this patch tested?

unit test
verified in production environment

Author: donnyzone <wellfengzhu@gmail.com>

Closes #18920 from DonnyZone/Branch-spark-19471.
2017-08-14 09:37:18 -07:00
caoxuewen 0326b69c98 [MINOR][SQL][TEST] no uncache table in joinsuite test
## What changes were proposed in this pull request?

At present, in test("broadcasted hash outer join operator selection") case,  set the testData2 to _CACHE TABLE_, but no _uncache table_ testData2. It can make people confused.
In addition, in the joinsuite test cases, clear the cache table of work by SharedSQLContext _spark.sharedState.cacheManager.clearCache_ to do, so we do not need to uncache table
let's fix it. thanks.

## How was this patch tested?
Existing test cases.

Author: caoxuewen <cao.xuewen@zte.com.cn>

Closes #18914 from heary-cao/uncache_table.
2017-08-14 09:33:22 -07:00
aokolnychyi 5596ce83c4 [MINOR][SQL] Additional test case for CheckCartesianProducts rule
## What changes were proposed in this pull request?

While discovering optimization rules and their test coverage, I did not find any tests for `CheckCartesianProducts` in the Catalyst folder. So, I decided to create a new test suite. Once I finished, I found a test in `JoinSuite` for this functionality so feel free to discard this change if it does not make much sense. The proposed test suite covers a few additional use cases.

Author: aokolnychyi <anton.okolnychyi@sap.com>

Closes #18909 from aokolnychyi/check-cartesian-join-tests.
2017-08-13 21:33:16 -07:00
Tejas Patil 7f16c69107 [SPARK-19122][SQL] Unnecessary shuffle+sort added if join predicates ordering differ from bucketing and sorting order
## What changes were proposed in this pull request?

Jira : https://issues.apache.org/jira/browse/SPARK-19122

`leftKeys` and `rightKeys` in `SortMergeJoinExec` are altered based on the ordering of join keys in the child's `outputPartitioning`. This is done everytime `requiredChildDistribution` is invoked during query planning.

## How was this patch tested?

- Added new test case
- Existing tests

Author: Tejas Patil <tejasp@fb.com>

Closes #16985 from tejasapatil/SPARK-19122_join_order_shuffle.
2017-08-11 15:13:42 -07:00
Tejas Patil 94439997d5 [SPARK-21595] Separate thresholds for buffering and spilling in ExternalAppendOnlyUnsafeRowArray
## What changes were proposed in this pull request?

[SPARK-21595](https://issues.apache.org/jira/browse/SPARK-21595) reported that there is excessive spilling to disk due to default spill threshold for `ExternalAppendOnlyUnsafeRowArray` being quite small for WINDOW operator. Old behaviour of WINDOW operator (pre https://github.com/apache/spark/pull/16909) would hold data in an array for first 4096 records post which it would switch to `UnsafeExternalSorter` and start spilling to disk after reaching `spark.shuffle.spill.numElementsForceSpillThreshold` (or earlier if there was paucity of memory due to excessive consumers).

Currently the (switch from in-memory to `UnsafeExternalSorter`) and (`UnsafeExternalSorter` spilling to disk) for `ExternalAppendOnlyUnsafeRowArray` is controlled by a single threshold. This PR aims to separate that to have more granular control.

## How was this patch tested?

Added unit tests

Author: Tejas Patil <tejasp@fb.com>

Closes #18843 from tejasapatil/SPARK-21595.
2017-08-11 22:01:00 +02:00
LucaCanali 0377338bf7 [SPARK-21519][SQL] Add an option to the JDBC data source to initialize the target DB environment
Add an option to the JDBC data source to initialize the environment of the remote database session

## What changes were proposed in this pull request?

This proposes an option to the JDBC datasource, tentatively called " sessionInitStatement" to implement the functionality of session initialization present for example in the Sqoop connector for Oracle (see https://sqoop.apache.org/docs/1.4.6/SqoopUserGuide.html#_oraoop_oracle_session_initialization_statements ) . After each database session is opened to the remote DB, and before starting to read data, this option executes a custom SQL statement (or a PL/SQL block in the case of Oracle).

See also https://issues.apache.org/jira/browse/SPARK-21519

## How was this patch tested?

Manually tested using Spark SQL data source and Oracle JDBC

Author: LucaCanali <luca.canali@cern.ch>

Closes #18724 from LucaCanali/JDBC_datasource_sessionInitStatement.
2017-08-11 12:03:37 -07:00
Adrian Ionescu 95ad960caf [SPARK-21669] Internal API for collecting metrics/stats during FileFormatWriter jobs
## What changes were proposed in this pull request?

This patch introduces an internal interface for tracking metrics and/or statistics on data on the fly, as it is being written to disk during a `FileFormatWriter` job and partially reimplements SPARK-20703 in terms of it.

The interface basically consists of 3 traits:
- `WriteTaskStats`: just a tag for classes that represent statistics collected during a `WriteTask`
  The only constraint it adds is that the class should be `Serializable`, as instances of it will be collected on the driver from all executors at the end of the `WriteJob`.
- `WriteTaskStatsTracker`: a trait for classes that can actually compute statistics based on tuples that are processed by a given `WriteTask` and eventually produce a `WriteTaskStats` instance.
- `WriteJobStatsTracker`: a trait for classes that act as containers of `Serializable` state that's necessary for instantiating `WriteTaskStatsTracker` on executors and finally process the resulting collection of `WriteTaskStats`, once they're gathered back on the driver.

Potential future use of this interface is e.g. CBO stats maintenance during `INSERT INTO table ... ` operations.

## How was this patch tested?
Existing tests for SPARK-20703 exercise the new code: `hive/SQLMetricsSuite`, `sql/JavaDataFrameReaderWriterSuite`, etc.

Author: Adrian Ionescu <adrian@databricks.com>

Closes #18884 from adrian-ionescu/write-stats-tracker-api.
2017-08-10 12:37:10 -07:00