Commit graph

1759 commits

Author SHA1 Message Date
Wesley Tang 5f6bdf97c5 [SPARK-13281][CORE] Switch broadcast of RDD to exception from warning
## What changes were proposed in this pull request?

In SparkContext, throw Illegalargumentexception when trying to broadcast rdd directly, instead of logging the warning.

## How was this patch tested?

mvn clean install
Add UT in BroadcastSuite

Author: Wesley Tang <tangmingjun@mininglamp.com>

Closes #11735 from breakdawn/master.
2016-03-16 16:12:17 +00:00
Tejas Patil 1d95fb6785 [SPARK-13793][CORE] PipedRDD doesn't propagate exceptions while reading parent RDD
## What changes were proposed in this pull request?

PipedRDD creates a child thread to read output of the parent stage and feed it to the pipe process. Used a variable to save the exception thrown in the child thread and then propagating the exception in the main thread if the variable was set.

## How was this patch tested?

- Added a unit test
- Ran all the existing tests in PipedRDDSuite and they all pass with the change
- Tested the patch with a real pipe() job, bounced the executor node which ran the parent stage to simulate a fetch failure and observed that the parent stage was re-ran.

Author: Tejas Patil <tejasp@fb.com>

Closes #11628 from tejasapatil/pipe_rdd.
2016-03-16 09:58:53 +00:00
Sean Owen 3b461d9ecd [SPARK-13823][SPARK-13397][SPARK-13395][CORE] More warnings, StandardCharset follow up
## What changes were proposed in this pull request?

Follow up to https://github.com/apache/spark/pull/11657

- Also update `String.getBytes("UTF-8")` to use `StandardCharsets.UTF_8`
- And fix one last new Coverity warning that turned up (use of unguarded `wait()` replaced by simpler/more robust `java.util.concurrent` classes in tests)
- And while we're here cleaning up Coverity warnings, just fix about 15 more build warnings

## How was this patch tested?

Jenkins tests

Author: Sean Owen <sowen@cloudera.com>

Closes #11725 from srowen/SPARK-13823.2.
2016-03-16 09:36:34 +00:00
Josh Rosen 38529d8f23 [SPARK-10907][SPARK-6157] Remove pendingUnrollMemory from MemoryStore
This patch refactors the MemoryStore to remove the concept of `pendingUnrollMemory`. It also fixes fixes SPARK-6157: "Unrolling with MEMORY_AND_DISK should always release memory".

Key changes:

- Inline `MemoryStore.tryToPut` at its three call sites in the `MemoryStore`.
- Inline `Memory.unrollSafely` at its only call site (in `MemoryStore.putIterator`).
- Inline `MemoryManager.acquireStorageMemory` at its call sites.
- Simplify the code as a result of this inlining (some parameters have fixed values after inlining, so lots of branches can be removed).
- Remove the `pendingUnrollMemory` map by returning the amount of unrollMemory allocated when returning an iterator after a failed `putIterator` call.
- Change `putIterator` to return an instance of `PartiallyUnrolledIterator`, a special iterator subclass which will automatically free the unroll memory of its partially-unrolled elements when the iterator is consumed. To handle cases where the iterator is not consumed (e.g. when a MEMORY_ONLY put fails), `PartiallyUnrolledIterator` exposes a `close()` method which may be called to discard the unrolled values and free their memory.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #11613 from JoshRosen/cleanup-unroll-memory.
2016-03-14 14:26:39 -07:00
Thomas Graves 23385e853e [SPARK-13054] Always post TaskEnd event for tasks
I am using dynamic container allocation and speculation and am seeing issues with the active task accounting. The Executor UI still shows active tasks on the an executor but the job/stage is all completed. I think its also affecting the dynamic allocation being able to release containers because it thinks there are still tasks.
There are multiple issues with this:
-  If the task end for tasks (in this case probably because of speculation) comes in after the stage is finished, then the DAGScheduler.handleTaskCompletion will skip the task completion event

Author: Thomas Graves <tgraves@prevailsail.corp.gq1.yahoo.com>
Author: Thomas Graves <tgraves@staydecay.corp.gq1.yahoo.com>
Author: Tom Graves <tgraves@yahoo-inc.com>

Closes #10951 from tgravescs/SPARK-11701.
2016-03-14 12:31:46 -07:00
Bertrand Bossy 310981d49a [SPARK-12583][MESOS] Mesos shuffle service: Don't delete shuffle files before application has stopped
## Problem description:

Mesos shuffle service is completely unusable since Spark 1.6.0 . The problem seems to occur since the move from akka to netty in the networking layer. Until now, a connection from the driver to each shuffle service was used as a signal for the shuffle service to determine, whether the driver is still running. Since 1.6.0, this connection is closed after spark.shuffle.io.connectionTimeout (or spark.network.timeout if the former is not set) due to it being idle. The shuffle service interprets this as a signal that the driver has stopped, despite the driver still being alive. Thus, shuffle files are deleted before the application has stopped.

### Context and analysis:

spark shuffle fails with mesos after 2mins: https://issues.apache.org/jira/browse/SPARK-12583
External shuffle service broken w/ Mesos: https://issues.apache.org/jira/browse/SPARK-13159

This is a follow up on #11207 .

## What changes were proposed in this pull request?

This PR adds a heartbeat signal from the Driver (in MesosExternalShuffleClient) to all registered external mesos shuffle service instances. In MesosExternalShuffleBlockHandler, a thread periodically checks whether a driver has timed out and cleans an application's shuffle files if this is the case.

## How was the this patch tested?

This patch has been tested on a small mesos test cluster using the spark-shell. Log output from mesos shuffle service:
```
16/02/19 15:13:45 INFO mesos.MesosExternalShuffleBlockHandler: Received registration request from app 294def07-3249-4e0f-8d71-bf8c83c58a50-0018 (remote address /xxx.xxx.xxx.xxx:52391, heartbeat timeout 120000 ms).
16/02/19 15:13:47 INFO shuffle.ExternalShuffleBlockResolver: Registered executor AppExecId{appId=294def07-3249-4e0f-8d71-bf8c83c58a50-0018, execId=3} with ExecutorShuffleInfo{localDirs=[/foo/blockmgr-c84c0697-a3f9-4f61-9c64-4d3ee227c047], subDirsPerLocalDir=64, shuffleManager=sort}
16/02/19 15:13:47 INFO shuffle.ExternalShuffleBlockResolver: Registered executor AppExecId{appId=294def07-3249-4e0f-8d71-bf8c83c58a50-0018, execId=7} with ExecutorShuffleInfo{localDirs=[/foo/blockmgr-bf46497a-de80-47b9-88f9-563123b59e03], subDirsPerLocalDir=64, shuffleManager=sort}
16/02/19 15:16:02 INFO mesos.MesosExternalShuffleBlockHandler: Application 294def07-3249-4e0f-8d71-bf8c83c58a50-0018 timed out. Removing shuffle files.
16/02/19 15:16:02 INFO shuffle.ExternalShuffleBlockResolver: Application 294def07-3249-4e0f-8d71-bf8c83c58a50-0018 removed, cleanupLocalDirs = true
16/02/19 15:16:02 INFO shuffle.ExternalShuffleBlockResolver: Cleaning up executor AppExecId{appId=294def07-3249-4e0f-8d71-bf8c83c58a50-0018, execId=3}'s 1 local dirs
16/02/19 15:16:02 INFO shuffle.ExternalShuffleBlockResolver: Cleaning up executor AppExecId{appId=294def07-3249-4e0f-8d71-bf8c83c58a50-0018, execId=7}'s 1 local dirs
```
Note: there are 2 executors running on this slave.

Author: Bertrand Bossy <bertrand.bossy@teralytics.net>

Closes #11272 from bbossy/SPARK-12583-mesos-shuffle-service-heartbeat.
2016-03-14 12:22:57 -07:00
Wilson Wu 31d069d4c2 [SPARK-13746][TESTS] stop using deprecated SynchronizedSet
trait SynchronizedSet in package mutable is deprecated

Author: Wilson Wu <wilson888888888@gmail.com>

Closes #11580 from wilson888888888/spark-synchronizedset.
2016-03-14 09:13:29 +00:00
Dongjoon Hyun acdf219703 [MINOR][DOCS] Fix more typos in comments/strings.
## What changes were proposed in this pull request?

This PR fixes 135 typos over 107 files:
* 121 typos in comments
* 11 typos in testcase name
* 3 typos in log messages

## How was this patch tested?

Manual.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #11689 from dongjoon-hyun/fix_more_typos.
2016-03-14 09:07:39 +00:00
Sean Owen 1840852841 [SPARK-13823][CORE][STREAMING][SQL] Always specify Charset in String <-> byte[] conversions (and remaining Coverity items)
## What changes were proposed in this pull request?

- Fixes calls to `new String(byte[])` or `String.getBytes()` that rely on platform default encoding, to use UTF-8
- Same for `InputStreamReader` and `OutputStreamWriter` constructors
- Standardizes on UTF-8 everywhere
- Standardizes specifying the encoding with `StandardCharsets.UTF-8`, not the Guava constant or "UTF-8" (which means handling `UnuspportedEncodingException`)
- (also addresses the other remaining Coverity scan issues, which are pretty trivial; these are separated into commit 1deecd8d9c )

## How was this patch tested?

Jenkins tests

Author: Sean Owen <sowen@cloudera.com>

Closes #11657 from srowen/SPARK-13823.
2016-03-13 21:03:49 -07:00
Nezih Yigitbasi ff776b2fc1 [SPARK-13328][CORE] Poor read performance for broadcast variables with dynamic resource allocation
When dynamic resource allocation is enabled fetching broadcast variables from removed executors were causing job failures and SPARK-9591 fixed this problem by trying all locations of a block before giving up. However, the locations of a block is retrieved only once from the driver in this process and the locations in this list can be stale due to dynamic resource allocation. This situation gets worse when running on a large cluster as the size of this location list can be in the order of several hundreds out of which there may be tens of stale entries. What we have observed is with the default settings of 3 max retries and 5s between retries (that's 15s per location) the time it takes to read a broadcast variable can be as high as ~17m (70 failed attempts * 15s/attempt)

Author: Nezih Yigitbasi <nyigitbasi@netflix.com>

Closes #11241 from nezihyigitbasi/SPARK-13328.
2016-03-11 11:11:53 -08:00
Shixiong Zhu 27fe6bacc5 [SPARK-13604][CORE] Sync worker's state after registering with master
## What changes were proposed in this pull request?

Here lists all cases that Master cannot talk with Worker for a while and then network is back.

1. Master doesn't know the network issue (not yet timeout)

  a. Worker doesn't know the network issue (onDisconnected is not called)
    - Worker keeps sending Heartbeat. Both Worker and Master don't know the network issue. Nothing to do. (Finally, Master will notice the heartbeat timeout if network is not recovered)

  b. Worker knows the network issue (onDisconnected is called)
    - Worker stops sending Heartbeat and sends `RegisterWorker` to master. Master will reply `RegisterWorkerFailed("Duplicate worker ID")`. Worker calls "System.exit(1)" (Finally, Master will notice the heartbeat timeout if network is not recovered) (May leak driver processes. See [SPARK-13602](https://issues.apache.org/jira/browse/SPARK-13602))

2. Worker timeout (Master knows the network issue). In such case,  master removes Worker and its executors and drivers.

  a. Worker doesn't know the network issue (onDisconnected is not called)
    - Worker keeps sending Heartbeat.
    - If the network is back, say Master receives Heartbeat, Master sends `ReconnectWorker` to Worker
    - Worker send `RegisterWorker` to master.
    - Master accepts `RegisterWorker` but doesn't know executors and drivers in Worker. (may leak executors)

  b. Worker knows the network issue (onDisconnected is called)
    - Worker stop sending `Heartbeat`. Worker will send "RegisterWorker" to master.
    - Master accepts `RegisterWorker` but doesn't know executors and drivers in Worker. (may leak executors)

This PR fixes executors and drivers leak in 2.a and 2.b when Worker reregisters with Master. The approach is making Worker send `WorkerLatestState` to sync the state after registering with master successfully. Then Master will ask Worker to kill unknown executors and drivers.

Note:  Worker cannot just kill executors after registering with master because in the worker, `LaunchExecutor` and `RegisteredWorker` are processed in two threads. If `LaunchExecutor` happens before `RegisteredWorker`, Worker's executor list will contain new executors after Master accepts `RegisterWorker`. We should not kill these executors. So sending the list to Master and let Master tell Worker which executors should be killed.

## How was this patch tested?

test("SPARK-13604: Master should ask Worker kill unknown executors and drivers")

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #11455 from zsxwing/orphan-executors.
2016-03-10 16:59:14 -08:00
Dongjoon Hyun 91fed8e9c5 [SPARK-3854][BUILD] Scala style: require spaces before {.
## What changes were proposed in this pull request?

Since the opening curly brace, '{', has many usages as discussed in [SPARK-3854](https://issues.apache.org/jira/browse/SPARK-3854), this PR adds a ScalaStyle rule to prevent '){' pattern  for the following majority pattern and fixes the code accordingly. If we enforce this in ScalaStyle from now, it will improve the Scala code quality and reduce review time.
```
// Correct:
if (true) {
  println("Wow!")
}

// Incorrect:
if (true){
   println("Wow!")
}
```
IntelliJ also shows new warnings based on this.

## How was this patch tested?

Pass the Jenkins ScalaStyle test.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #11637 from dongjoon-hyun/SPARK-3854.
2016-03-10 15:57:22 -08:00
Josh Rosen 81d48532d9 [SPARK-13696] Remove BlockStore class & simplify interfaces of mem. & disk stores
Today, both the MemoryStore and DiskStore implement a common `BlockStore` API, but I feel that this API is inappropriate because it abstracts away important distinctions between the behavior of these two stores.

For instance, the disk store doesn't have a notion of storing deserialized objects, so it's confusing for it to expose object-based APIs like putIterator() and getValues() instead of only exposing binary APIs and pushing the responsibilities of serialization and deserialization to the client. Similarly, the DiskStore put() methods accepted a `StorageLevel` parameter even though the disk store can only store blocks in one form.

As part of a larger BlockManager interface cleanup, this patch remove the BlockStore interface and refines the MemoryStore and DiskStore interfaces to reflect more narrow sets of responsibilities for those components. Some of the benefits of this interface cleanup are reflected in simplifications to several unit tests to eliminate now-unnecessary mocking, significant simplification of the BlockManager's `getLocal()` and `doPut()` methods, and a narrower API between the MemoryStore and DiskStore.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #11534 from JoshRosen/remove-blockstore-interface.
2016-03-10 15:08:41 -08:00
bomeng 235f4ac6fc [SPARK-13727][CORE] SparkConf.contains does not consider deprecated keys
The contains() method does not return consistently with get() if the key is deprecated. For example,
import org.apache.spark.SparkConf
val conf = new SparkConf()
conf.set("spark.io.compression.lz4.block.size", "12345")  # display some deprecated warning message
conf.get("spark.io.compression.lz4.block.size") # return 12345
conf.get("spark.io.compression.lz4.blockSize") # return 12345
conf.contains("spark.io.compression.lz4.block.size") # return true
conf.contains("spark.io.compression.lz4.blockSize") # return false

The fix will make the contains() and get() more consistent.

I've added a test case for this.

(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
Unit tests should be sufficient.

Author: bomeng <bmeng@us.ibm.com>

Closes #11568 from bomeng/SPARK-13727.
2016-03-10 11:17:40 -08:00
Sergiusz Urbaniak a4a0addccf [SPARK-13492][MESOS] Configurable Mesos framework webui URL.
## What changes were proposed in this pull request?

Previously the Mesos framework webui URL was being derived only from the Spark UI address leaving no possibility to configure it. This commit makes it configurable. If unset it falls back to the previous behavior.

Motivation:
This change is necessary in order to be able to install Spark on DCOS and to be able to give it a custom service link. The configured `webui_url` is configured to point to a reverse proxy in the DCOS environment.

## How was this patch tested?

Locally, using unit tests and on DCOS testing and stable revision.

Author: Sergiusz Urbaniak <sur@mesosphere.io>

Closes #11369 from s-urbaniak/sur-webui-url.
2016-03-09 18:10:01 -08:00
Dongjoon Hyun c3689bc24e [SPARK-13702][CORE][SQL][MLLIB] Use diamond operator for generic instance creation in Java code.
## What changes were proposed in this pull request?

In order to make `docs/examples` (and other related code) more simple/readable/user-friendly, this PR replaces existing codes like the followings by using `diamond` operator.

```
-    final ArrayList<Product2<Object, Object>> dataToWrite =
-      new ArrayList<Product2<Object, Object>>();
+    final ArrayList<Product2<Object, Object>> dataToWrite = new ArrayList<>();
```

Java 7 or higher supports **diamond** operator which replaces the type arguments required to invoke the constructor of a generic class with an empty set of type parameters (<>). Currently, Spark Java code use mixed usage of this.

## How was this patch tested?

Manual.
Pass the existing tests.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #11541 from dongjoon-hyun/SPARK-13702.
2016-03-09 10:31:26 +00:00
Dongjoon Hyun f3201aeeb0 [SPARK-13692][CORE][SQL] Fix trivial Coverity/Checkstyle defects
## What changes were proposed in this pull request?

This issue fixes the following potential bugs and Java coding style detected by Coverity and Checkstyle.

- Implement both null and type checking in equals functions.
- Fix wrong type casting logic in SimpleJavaBean2.equals.
- Add `implement Cloneable` to `UTF8String` and `SortedIterator`.
- Remove dereferencing before null check in `AbstractBytesToBytesMapSuite`.
- Fix coding style: Add '{}' to single `for` statement in mllib examples.
- Remove unused imports in `ColumnarBatch` and `JavaKinesisStreamSuite`.
- Remove unused fields in `ChunkFetchIntegrationSuite`.
- Add `stop()` to prevent resource leak.

Please note that the last two checkstyle errors exist on newly added commits after [SPARK-13583](https://issues.apache.org/jira/browse/SPARK-13583).

## How was this patch tested?

manual via `./dev/lint-java` and Coverity site.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #11530 from dongjoon-hyun/SPARK-13692.
2016-03-09 10:12:23 +00:00
Josh Rosen ad3c9a9730 [SPARK-13695] Don't cache MEMORY_AND_DISK blocks as bytes in memory after spills
When a cached block is spilled to disk and read back in serialized form (i.e. as bytes), the current BlockManager implementation will attempt to re-insert the serialized block into the MemoryStore even if the block's storage level requests deserialized caching.

This behavior adds some complexity to the MemoryStore but I don't think it offers many performance benefits and I'd like to remove it in order to simplify a larger refactoring patch. Therefore, this patch changes the behavior so that disk store reads will only cache bytes in the memory store for blocks with serialized storage levels.

There are two places where we request serialized bytes from the BlockStore:

1. getLocalBytes(), which is only called when reading local copies of TorrentBroadcast pieces. Broadcast pieces are always cached using a serialized storage level, so this won't lead to a mismatch in serialization forms if spilled bytes read from disk are cached as bytes in the memory store.
2. the non-shuffle-block branch in getBlockData(), which is only called by the NettyBlockRpcServer when responding to requests to read remote blocks. Caching the serialized bytes in memory will only benefit us if those cached bytes are read before they're evicted and the likelihood of that happening seems low since the frequency of remote reads of non-broadcast cached blocks seems very low. Caching these bytes when they have a low probability of being read is bad if it risks the eviction of blocks which are cached in their expected serialized/deserialized forms, since those blocks seem more likely to be read in local computation.

Given the argument above, I think this change is unlikely to cause performance regressions.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #11533 from JoshRosen/remove-memorystore-level-mismatch.
2016-03-08 10:40:27 -08:00
Josh Rosen e52e597db4 [SPARK-13659] Refactor BlockStore put*() APIs to remove returnValues
In preparation for larger refactoring, this patch removes the confusing `returnValues` option from the BlockStore put() APIs: returning the value is only useful in one place (caching) and in other situations, such as block replication, it's simpler to put() and then get().

As part of this change, I needed to refactor `BlockManager.doPut()`'s block replication code. I also changed `doPut()` to access the memory and disk stores directly rather than calling them through the BlockStore interface; this is in anticipation of a followup patch to remove the BlockStore interface so that the disk store can expose a binary-data-oriented API which is not concerned with Java objects or serialization.

These changes should be covered by the existing storage unit tests. The best way to review this patch is probably to look at the individual commits, all of which are small and have useful descriptions to guide the review.

/cc davies for review.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #11502 from JoshRosen/remove-returnvalues.
2016-03-07 21:50:01 -08:00
Marcelo Vanzin e1fb857992 [SPARK-529][CORE][YARN] Add type-safe config keys to SparkConf.
This is, in a way, the basics to enable SPARK-529 (which was closed as
won't fix but I think is still valuable). In fact, Spark SQL created
something for that, and this change basically factors out that code
and inserts it into SparkConf, with some extra bells and whistles.

To showcase the usage of this pattern, I modified the YARN backend
to use the new config keys (defined in the new `config` package object
under `o.a.s.deploy.yarn`). Most of the changes are mechanic, although
logic had to be slightly modified in a handful of places.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #10205 from vanzin/conf-opts.
2016-03-07 14:13:44 -08:00
Dongjoon Hyun 941b270b70 [MINOR] Fix typos in comments and testcase name of code
## What changes were proposed in this pull request?

This PR fixes typos in comments and testcase name of code.

## How was this patch tested?

manual.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #11481 from dongjoon-hyun/minor_fix_typos_in_code.
2016-03-03 22:42:12 +00:00
Sean Owen 52035d1036 [SPARK-13423][HOTFIX] Static analysis fixes for 2.x / fixed for Scala 2.10, again
## What changes were proposed in this pull request?

Fixes (another) compile problem due to inadvertent use of Option.contains, only in Scala 2.11

## How was this patch tested?

Jenkins tests

Author: Sean Owen <sowen@cloudera.com>

Closes #11496 from srowen/SPARK-13423.3.
2016-03-03 22:40:39 +00:00
Dongjoon Hyun b5f02d6743 [SPARK-13583][CORE][STREAMING] Remove unused imports and add checkstyle rule
## What changes were proposed in this pull request?

After SPARK-6990, `dev/lint-java` keeps Java code healthy and helps PR review by saving much time.
This issue aims remove unused imports from Java/Scala code and add `UnusedImports` checkstyle rule to help developers.

## How was this patch tested?
```
./dev/lint-java
./build/sbt compile
```

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #11438 from dongjoon-hyun/SPARK-13583.
2016-03-03 10:12:32 +00:00
Sean Owen e97fc7f176 [SPARK-13423][WIP][CORE][SQL][STREAMING] Static analysis fixes for 2.x
## What changes were proposed in this pull request?

Make some cross-cutting code improvements according to static analysis. These are individually up for discussion since they exist in separate commits that can be reverted. The changes are broadly:

- Inner class should be static
- Mismatched hashCode/equals
- Overflow in compareTo
- Unchecked warnings
- Misuse of assert, vs junit.assert
- get(a) + getOrElse(b) -> getOrElse(a,b)
- Array/String .size -> .length (occasionally, -> .isEmpty / .nonEmpty) to avoid implicit conversions
- Dead code
- tailrec
- exists(_ == ) -> contains find + nonEmpty -> exists filter + size -> count
- reduce(_+_) -> sum map + flatten -> map

The most controversial may be .size -> .length simply because of its size. It is intended to avoid implicits that might be expensive in some places.

## How was the this patch tested?

Existing Jenkins unit tests.

Author: Sean Owen <sowen@cloudera.com>

Closes #11292 from srowen/SPARK-13423.
2016-03-03 09:54:09 +00:00
Devaraj K 56e3d00715 [SPARK-13621][CORE] TestExecutor.scala needs to be moved to test package
Moved TestExecutor.scala from src to test package and removed the unused file TestClient.scala.

Author: Devaraj K <devaraj@apache.org>

Closes #11474 from devaraj-kavali/SPARK-13621.
2016-03-02 22:34:44 -08:00
Davies Liu b5a59a0fe2 [SPARK-13601] call failure callbacks before writer.close()
## What changes were proposed in this pull request?

In order to tell OutputStream that the task has failed or not, we should call the failure callbacks BEFORE calling writer.close().

## How was this patch tested?

Added new unit tests.

Author: Davies Liu <davies@databricks.com>

Closes #11450 from davies/callback.
2016-03-02 14:35:44 -08:00
Josh Rosen d6969ffc0f [SPARK-12817] Add BlockManager.getOrElseUpdate and remove CacheManager
CacheManager directly calls MemoryStore.unrollSafely() and has its own logic for handling graceful fallback to disk when cached data does not fit in memory. However, this logic also exists inside of the MemoryStore itself, so this appears to be unnecessary duplication.

Thanks to the addition of block-level read/write locks in #10705, we can refactor the code to remove the CacheManager and replace it with an atomic `BlockManager.getOrElseUpdate()` method.

This pull request replaces / subsumes #10748.

/cc andrewor14 and nongli for review. Note that this changes the locking semantics of a couple of internal BlockManager methods (`doPut()` and `lockNewBlockForWriting`), so please pay attention to the Scaladoc changes and new test cases for those methods.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #11436 from JoshRosen/remove-cachemanager.
2016-03-02 10:26:47 -08:00
Jeff Zhang 99fe8993f5 [SPARK-12994][CORE] It is not necessary to create ExecutorAllocationM…
…anager in local mode

Author: Jeff Zhang <zjffdu@apache.org>

Closes #10914 from zjffdu/SPARK-12994.
2016-02-29 12:08:37 +00:00
Reynold Xin 391755dc6e [SPARK-13465] Add a task failure listener to TaskContext
## What changes were proposed in this pull request?

TaskContext supports task completion callback, which gets called regardless of task failures. However, there is no way for the listener to know if there is an error. This patch adds a new listener that gets called when a task fails.

## How was the this patch tested?
New unit test case and integration test case covering the code path

Author: Reynold Xin <rxin@databricks.com>

Closes #11340 from rxin/SPARK-13465.
2016-02-26 12:49:16 -08:00
Josh Rosen 633d63a48a [SPARK-12757] Add block-level read/write locks to BlockManager
## Motivation

As a pre-requisite to off-heap caching of blocks, we need a mechanism to prevent pages / blocks from being evicted while they are being read. With on-heap objects, evicting a block while it is being read merely leads to memory-accounting problems (because we assume that an evicted block is a candidate for garbage-collection, which will not be true during a read), but with off-heap memory this will lead to either data corruption or segmentation faults.

## Changes

### BlockInfoManager and reader/writer locks

This patch adds block-level read/write locks to the BlockManager. It introduces a new `BlockInfoManager` component, which is contained within the `BlockManager`, holds the `BlockInfo` objects that the `BlockManager` uses for tracking block metadata, and exposes APIs for locking blocks in either shared read or exclusive write modes.

`BlockManager`'s `get*()` and `put*()` methods now implicitly acquire the necessary locks. After a `get()` call successfully retrieves a block, that block is locked in a shared read mode. A `put()` call will block until it acquires an exclusive write lock. If the write succeeds, the write lock will be downgraded to a shared read lock before returning to the caller. This `put()` locking behavior allows us store a block and then immediately turn around and read it without having to worry about it having been evicted between the write and the read, which will allow us to significantly simplify `CacheManager` in the future (see #10748).

See `BlockInfoManagerSuite`'s test cases for a more detailed specification of the locking semantics.

### Auto-release of locks at the end of tasks

Our locking APIs support explicit release of locks (by calling `unlock()`), but it's not always possible to guarantee that locks will be released prior to the end of the task. One reason for this is our iterator interface: since our iterators don't support an explicit `close()` operator to signal that no more records will be consumed, operations like `take()` or `limit()` don't have a good means to release locks on their input iterators' blocks. Another example is broadcast variables, whose block locks can only be released at the end of the task.

To address this, `BlockInfoManager` uses a pair of maps to track the set of locks acquired by each task. Lock acquisitions automatically record the current task attempt id by obtaining it from `TaskContext`. When a task finishes, code in `Executor` calls `BlockInfoManager.unlockAllLocksForTask(taskAttemptId)` to free locks.

### Locking and the MemoryStore

In order to prevent in-memory blocks from being evicted while they are being read, the `MemoryStore`'s `evictBlocksToFreeSpace()` method acquires write locks on blocks which it is considering as candidates for eviction. These lock acquisitions are non-blocking, so a block which is being read will not be evicted. By holding write locks until the eviction is performed or skipped (in case evicting the blocks would not free enough memory), we avoid a race where a new reader starts to read a block after the block has been marked as an eviction candidate but before it has been removed.

### Locking and remote block transfer

This patch makes small changes to to block transfer and network layer code so that locks acquired by the BlockTransferService are released as soon as block transfer messages are consumed and released by Netty. This builds on top of #11193, a bug fix related to freeing of network layer ManagedBuffers.

## FAQ

- **Why not use Java's built-in [`ReadWriteLock`](https://docs.oracle.com/javase/7/docs/api/java/util/concurrent/locks/ReadWriteLock.html)?**

  Our locks operate on a per-task rather than per-thread level. Under certain circumstances a task may consist of multiple threads, so using `ReadWriteLock` would mean that we might call `unlock()` from a thread which didn't hold the lock in question, an operation which has undefined semantics. If we could rely on Java 8 classes, we might be able to use [`StampedLock`](https://docs.oracle.com/javase/8/docs/api/java/util/concurrent/locks/StampedLock.html) to work around this issue.

- **Why not detect "leaked" locks in tests?**:

  See above notes about `take()` and `limit`.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #10705 from JoshRosen/pin-pages.
2016-02-25 17:17:56 -08:00
Shixiong Zhu 46f6e79316 Revert "[SPARK-13117][WEB UI] WebUI should use the local ip not 0.0.0.0"
This reverts commit 2e44031faf.
2016-02-25 11:39:26 -08:00
Devaraj K 2e44031faf [SPARK-13117][WEB UI] WebUI should use the local ip not 0.0.0.0
Fixed the HTTP Server Host Name/IP issue i.e. HTTP Server to take the
configured host name/IP and not '0.0.0.0' always.

Author: Devaraj K <devaraj@apache.org>

Closes #11133 from devaraj-kavali/SPARK-13117.
2016-02-25 12:18:43 +00:00
Daniel Jalova bcfd55fa98 [SPARK-12759][Core][Spark should fail fast if --executor-memory is too small for spark to start]
Added an exception to be thrown in UnifiedMemoryManager.scala if the configuration given for executor memory is too low. Also modified the exception message thrown when driver memory is too low.

This patch was tested manually by passing in config options to Spark shell. I also added a test in UnifiedMemoryManagerSuite.scala

Author: Daniel Jalova <djalova@us.ibm.com>

Closes #11255 from djalova/SPARK-12759.
2016-02-24 12:15:11 +00:00
Lianhui Wang 9f4263392e [SPARK-7729][UI] Executor which has been killed should also be displayed on Executor Tab
andrewor14 squito Dead Executors should also be displayed on Executor Tab.
as following:
![image](https://cloud.githubusercontent.com/assets/545478/11492707/ae55d7f6-982b-11e5-919a-b62cd84684b2.png)

Author: Lianhui Wang <lianhuiwang09@gmail.com>

This patch had conflicts when merged, resolved by
Committer: Andrew Or <andrew@databricks.com>

Closes #10058 from lianhuiwang/SPARK-7729.
2016-02-23 11:08:39 -08:00
jerryshao e99d017098 [SPARK-13220][CORE] deprecate yarn-client and yarn-cluster mode
Author: jerryshao <sshao@hortonworks.com>

Closes #11229 from jerryshao/SPARK-13220.
2016-02-23 12:30:57 +00:00
Timothy Chen 00461bb911 [SPARK-10749][MESOS] Support multiple roles with mesos cluster mode.
Currently the Mesos cluster dispatcher is not using offers from multiple roles correctly, as it simply aggregates all the offers resource values into one, but doesn't apply them correctly before calling the driver as Mesos needs the resources from the offers to be specified which role it originally belongs to. Multiple roles is already supported with fine/coarse grain scheduler, so porting that logic here to the cluster scheduler.

https://issues.apache.org/jira/browse/SPARK-10749

Author: Timothy Chen <tnachen@gmail.com>

Closes #8872 from tnachen/cluster_multi_roles.
2016-02-22 11:11:33 -08:00
Dongjoon Hyun 024482bf51 [MINOR][DOCS] Fix all typos in markdown files of doc and similar patterns in other comments
## What changes were proposed in this pull request?

This PR tries to fix all typos in all markdown files under `docs` module,
and fixes similar typos in other comments, too.

## How was the this patch tested?

manual tests.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #11300 from dongjoon-hyun/minor_fix_typos.
2016-02-22 09:52:07 +00:00
jerryshao 39ff154570 [SPARK-13426][CORE] Remove the support of SIMR
## What changes were proposed in this pull request?

This PR removes the support of SIMR, since SIMR is not actively used and maintained for a long time, also is not supported from `SparkSubmit`, so here propose to remove it.

## How was the this patch tested?

This patch is tested locally by running unit tests.

Author: jerryshao <sshao@hortonworks.com>

Closes #11296 from jerryshao/SPARK-13426.
2016-02-22 00:57:10 -08:00
Shixiong Zhu dfb2ae2f14 [SPARK-13408] [CORE] Ignore errors when it's already reported in JobWaiter
## What changes were proposed in this pull request?

`JobWaiter.taskSucceeded` will be called for each task. When `resultHandler` throws an exception, `taskSucceeded` will also throw it for each task. DAGScheduler just catches it and reports it like this:
```Scala
                  try {
                    job.listener.taskSucceeded(rt.outputId, event.result)
                  } catch {
                    case e: Exception =>
                      // TODO: Perhaps we want to mark the resultStage as failed?
                      job.listener.jobFailed(new SparkDriverExecutionException(e))
                  }
```
Therefore `JobWaiter.jobFailed` may be called multiple times.

So `JobWaiter.jobFailed` should use `Promise.tryFailure` instead of `Promise.failure` because the latter one doesn't support calling multiple times.

## How was the this patch tested?

Jenkins tests.

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #11280 from zsxwing/SPARK-13408.
2016-02-19 23:00:08 -08:00
Josh Rosen 983fa2d620 [SPARK-13407] Guard against garbage-collected accumulators in TaskMetrics.fromAccumulatorUpdates
`TaskMetrics.fromAccumulatorUpdates()` can fail if accumulators have been garbage-collected on the driver. To guard against this, this patch introduces `ListenerTaskMetrics`, a subclass of `TaskMetrics` which is used only in `TaskMetrics.fromAccumulatorUpdates()` and which eliminates the need to access the original accumulators on the driver.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #11276 from JoshRosen/accum-updates-fix.
2016-02-19 15:57:23 -08:00
Sean Owen 78562535fe [SPARK-13371][CORE][STRING] TaskSetManager.dequeueSpeculativeTask compares Option and String directly.
## What changes were proposed in this pull request?

Fix some comparisons between unequal types that cause IJ warnings and in at least one case a likely bug (TaskSetManager)

## How was the this patch tested?

Running Jenkins tests

Author: Sean Owen <sowen@cloudera.com>

Closes #11253 from srowen/SPARK-13371.
2016-02-18 12:14:30 -08:00
Andrew Or 9451fed52c [SPARK-13344][TEST] Fix harmless accumulator not found exceptions
See [JIRA](https://issues.apache.org/jira/browse/SPARK-13344) for more detail. This was caused by #10835.

Author: Andrew Or <andrew@databricks.com>

Closes #11222 from andrewor14/fix-test-accum-exceptions.
2016-02-17 16:17:20 -08:00
Claes Redestad 22e9723d62 [SPARK-13278][CORE] Launcher fails to start with JDK 9 EA
See http://openjdk.java.net/jeps/223 for more information about the JDK 9 version string scheme.

Author: Claes Redestad <claes.redestad@gmail.com>

Closes #11160 from cl4es/master.
2016-02-14 11:49:37 +00:00
Sean Owen 388cd9ea8d [SPARK-13172][CORE][SQL] Stop using RichException.getStackTrace it is deprecated
Replace `getStackTraceString` with `Utils.exceptionString`

Author: Sean Owen <sowen@cloudera.com>

Closes #11182 from srowen/SPARK-13172.
2016-02-13 21:05:48 -08:00
Michael Gummelt 62b1c07e7e [SPARK-5095] remove flaky test
Overrode the start() method, which was previously starting a thread causing a race condition. I believe this should fix the flaky test.

Author: Michael Gummelt <mgummelt@mesosphere.io>

Closes #11164 from mgummelt/fix_mesos_tests.
2016-02-12 15:00:39 -08:00
Michael Gummelt 38bc6018e9 [SPARK-5095] Fix style in mesos coarse grained scheduler code
andrewor14 This addressed your style comments from #10993

Author: Michael Gummelt <mgummelt@mesosphere.io>

Closes #11187 from mgummelt/fix_mesos_style.
2016-02-12 14:57:31 -08:00
Sanket 894921d813 [SPARK-6166] Limit number of in flight outbound requests
This JIRA is related to
https://github.com/apache/spark/pull/5852
Had to do some minor rework and test to make sure it
works with current version of spark.

Author: Sanket <schintap@untilservice-lm>

Closes #10838 from redsanket/limit-outbound-connections.
2016-02-11 22:40:00 -08:00
Steve Loughran a2c7dcf61f [SPARK-7889][WEBUI] HistoryServer updates UI for incomplete apps
When the HistoryServer is showing an incomplete app, it needs to check if there is a newer version of the app available.  It does this by checking if a version of the app has been loaded with a larger *filesize*.  If so, it detaches the current UI, attaches the new one, and redirects back to the same URL to show the new UI.

https://issues.apache.org/jira/browse/SPARK-7889

Author: Steve Loughran <stevel@hortonworks.com>
Author: Imran Rashid <irashid@cloudera.com>

Closes #11118 from squito/SPARK-7889-alternate.
2016-02-11 21:37:53 -06:00
Junyang f9ae99fee1 [SPARK-13074][CORE] Add JavaSparkContext. getPersistentRDDs method
The "getPersistentRDDs()" is a useful API of SparkContext to get cached RDDs. However, the JavaSparkContext does not have this API.

Add a simple getPersistentRDDs() to get java.util.Map<Integer, JavaRDD> for Java users.

Author: Junyang <fly.shenjy@gmail.com>

Closes #10978 from flyjy/master.
2016-02-11 09:33:11 +00:00
Sean Owen 29c547303f [SPARK-12414][CORE] Remove closure serializer
Remove spark.closure.serializer option and use JavaSerializer always

CC andrewor14 rxin I see there's a discussion in the JIRA but just thought I'd offer this for a look at what the change would be.

Author: Sean Owen <sowen@cloudera.com>

Closes #11150 from srowen/SPARK-12414.
2016-02-10 13:34:53 -08:00