## What changes were proposed in this pull request?
This patch moves all the object related expressions into expressions.objects package, for better code organization.
## How was this patch tested?
N/A
Author: Reynold Xin <rxin@databricks.com>
Closes#13085 from rxin/SPARK-15306.
## What changes were proposed in this pull request?
dapplyCollect() applies an R function on each partition of a SparkDataFrame and collects the result back to R as a data.frame.
```
dapplyCollect(df, function(ldf) {...})
```
## How was this patch tested?
SparkR unit tests.
Author: Sun Rui <sunrui2016@gmail.com>
Closes#12989 from sun-rui/SPARK-15202.
## What changes were proposed in this pull request?
We currently use the Hive implementations for the collect_list/collect_set aggregate functions. This has a few major drawbacks: the use of HiveUDAF (which has quite a bit of overhead) and the lack of support for struct datatypes. This PR adds native implementation of these functions to Spark.
The size of the collected list/set may vary, this means we cannot use the fast, Tungsten, aggregation path to perform the aggregation, and that we fallback to the slower sort based path. Another big issue with these operators is that when the size of the collected list/set grows too large, we can start experiencing large GC pauzes and OOMEs.
This `collect*` aggregates implemented in this PR rely on the sort based aggregate path for correctness. They maintain their own internal buffer which holds the rows for one group at a time. The sortbased aggregation path is triggered by disabling `partialAggregation` for these aggregates (which is kinda funny); this technique is also employed in `org.apache.spark.sql.hiveHiveUDAFFunction`.
I have done some performance testing:
```scala
import org.apache.spark.sql.{Dataset, Row}
sql("create function collect_list2 as 'org.apache.hadoop.hive.ql.udf.generic.GenericUDAFCollectList'")
val df = range(0, 10000000).select($"id", (rand(213123L) * 100000).cast("int").as("grp"))
df.select(countDistinct($"grp")).show
def benchmark(name: String, plan: Dataset[Row], maxItr: Int = 5): Unit = {
// Do not measure planning.
plan1.queryExecution.executedPlan
// Execute the plan a number of times and average the result.
val start = System.nanoTime
var i = 0
while (i < maxItr) {
plan.rdd.foreach(row => Unit)
i += 1
}
val time = (System.nanoTime - start) / (maxItr * 1000000L)
println(s"[$name] $maxItr iterations completed in an average time of $time ms.")
}
val plan1 = df.groupBy($"grp").agg(collect_list($"id"))
val plan2 = df.groupBy($"grp").agg(callUDF("collect_list2", $"id"))
benchmark("Spark collect_list", plan1)
...
> [Spark collect_list] 5 iterations completed in an average time of 3371 ms.
benchmark("Hive collect_list", plan2)
...
> [Hive collect_list] 5 iterations completed in an average time of 9109 ms.
```
Performance is improved by a factor 2-3.
## How was this patch tested?
Added tests to `DataFrameAggregateSuite`.
Author: Herman van Hovell <hvanhovell@questtec.nl>
Closes#12874 from hvanhovell/implode.
## What changes were proposed in this pull request?
`DAGScheduler`sometimes generate incorrect stage graph.
Suppose you have the following DAG:
```
[A] <--(s_A)-- [B] <--(s_B)-- [C] <--(s_C)-- [D]
\ /
<-------------
```
Note: [] means an RDD, () means a shuffle dependency.
Here, RDD `B` has a shuffle dependency on RDD `A`, and RDD `C` has shuffle dependency on both `B` and `A`. The shuffle dependency IDs are numbers in the `DAGScheduler`, but to make the example easier to understand, let's call the shuffled data from `A` shuffle dependency ID `s_A` and the shuffled data from `B` shuffle dependency ID `s_B`.
The `getAncestorShuffleDependencies` method in `DAGScheduler` (incorrectly) does not check for duplicates when it's adding ShuffleDependencies to the parents data structure, so for this DAG, when `getAncestorShuffleDependencies` gets called on `C` (previous of the final RDD), `getAncestorShuffleDependencies` will return `s_A`, `s_B`, `s_A` (`s_A` gets added twice: once when the method "visit"s RDD `C`, and once when the method "visit"s RDD `B`). This is problematic because this line of code: https://github.com/apache/spark/blob/8ef3399/core/src/main/scala/org/apache/spark/scheduler/DAGScheduler.scala#L289 then generates a new shuffle stage for each dependency returned by `getAncestorShuffleDependencies`, resulting in duplicate map stages that compute the map output from RDD `A`.
As a result, `DAGScheduler` generates the following stages and their parents for each shuffle:
| | stage | parents |
|----|----|----|
| s_A | ShuffleMapStage 2 | List() |
| s_B | ShuffleMapStage 1 | List(ShuffleMapStage 0) |
| s_C | ShuffleMapStage 3 | List(ShuffleMapStage 1, ShuffleMapStage 2) |
| - | ResultStage 4 | List(ShuffleMapStage 3) |
The stage for s_A should be `ShuffleMapStage 0`, but the stage for `s_A` is generated twice as `ShuffleMapStage 2` and `ShuffleMapStage 0` is overwritten by `ShuffleMapStage 2`, and the stage `ShuffleMap Stage1` keeps referring the old stage `ShuffleMapStage 0`.
This patch is fixing it.
## How was this patch tested?
I added the sample RDD graph to show the illegal stage graph to `DAGSchedulerSuite`.
Author: Takuya UESHIN <ueshin@happy-camper.st>
Closes#12655 from ueshin/issues/SPARK-13902.
## What changes were proposed in this pull request?
When running with Kinesis Consumer Library (KCL), against a stream that contains aggregated data, the KCL needs access to protobuf to de-aggregate the records. Without this patch, that results in the following error message:
```
Caused by: java.lang.ClassNotFoundException: com.google.protobuf.ProtocolStringList
```
This PR upgrades the protobuf dependency within the kinesis-asl-assembly, and relocates that package (as not to conflict with Spark's use of 2.5.0), which fixes the above CNFE.
## How was this patch tested?
Used kinesis word count example against a stream containing aggregated data.
See: SPARK-14421
Author: Brian O'Neill <bone@alumni.brown.edu>
Closes#13054 from boneill42/protobuf-relocation-for-kcl.
## What changes were proposed in this pull request?
Since Jetty 8 is EOL (end of life) and has critical security issue [http://www.securityweek.com/critical-vulnerability-found-jetty-web-server], I think upgrading to 9 is necessary. I am using latest 9.2 since 9.3 requires Java 8+.
`javax.servlet` and `derby` were also upgraded since Jetty 9.2 needs corresponding version.
## How was this patch tested?
Manual test and current test cases should cover it.
Author: bomeng <bmeng@us.ibm.com>
Closes#12916 from bomeng/SPARK-14897.
#### What changes were proposed in this pull request?
~~Currently, multiple partitions are allowed to drop by using a single DDL command: Alter Table Drop Partition. However, the internal implementation could break atomicity. That means, we could just drop a subset of qualified partitions, if hitting an exception when dropping one of qualified partitions~~
~~This PR contains the following behavior changes:~~
~~- disallow dropping multiple partitions by a single command ~~
~~- allow users to input predicates in partition specification and issue a nicer error message if the predicate's comparison operator is not `=`.~~
~~- verify the partition spec in SessionCatalog. This can ensure each partition spec in `Drop Partition` does not correspond to multiple partitions.~~
This PR has two major parts:
- Verify the partition spec in SessionCatalog for fixing the following issue:
```scala
sql(s"ALTER TABLE $externalTab DROP PARTITION (ds='2008-04-09', unknownCol='12')")
```
Above example uses an invalid partition spec. Without this PR, we will drop all the partitions. The reason is Hive megastores getPartitions API returns all the partitions if we provide an invalid spec.
- Re-implemented the `dropPartitions` in `HiveClientImpl`. Now, we always check if all the user-specified partition specs exist before attempting to drop the partitions. Previously, we start drop the partition before completing checking the existence of all the partition specs. If any failure happened after we start to drop the partitions, we will log an error message to indicate which partitions have been dropped and which partitions have not been dropped.
#### How was this patch tested?
Modified the existing test cases and added new test cases.
Author: gatorsmile <gatorsmile@gmail.com>
Author: xiaoli <lixiao1983@gmail.com>
Author: Xiao Li <xiaoli@Xiaos-MacBook-Pro.local>
Closes#12801 from gatorsmile/banDropMultiPart.
## What changes were proposed in this pull request?
We will eliminate the pair of `DeserializeToObject` and `SerializeFromObject` in `Optimizer` and add extra `Project`. However, when DeserializeToObject's outputObjectType is ObjectType and its cls can't be processed by unsafe project, it will be failed.
To fix it, we can simply remove the extra `Project` and replace the output attribute of `DeserializeToObject` in another rule.
## How was this patch tested?
`DatasetSuite`.
Author: Liang-Chi Hsieh <simonh@tw.ibm.com>
Closes#12926 from viirya/fix-eliminate-serialization-projection.
## What changes were proposed in this pull request?
Deprecates registerTempTable and add dataset.createTempView, dataset.createOrReplaceTempView.
## How was this patch tested?
Unit tests.
Author: Sean Zhong <seanzhong@databricks.com>
Closes#12945 from clockfly/spark-15171.
## What changes were proposed in this pull request?
Add impurity param to GBTRegressor and mark the of the models & regressors in regression.py as experimental to match Scaladoc.
## How was this patch tested?
Added default value to init, tested with unit/doc tests.
Author: Holden Karau <holden@us.ibm.com>
Closes#13071 from holdenk/SPARK-15281-GBTRegressor-impurity.
## What changes were proposed in this pull request?
This PR adds a new rule to convert `SimpleCatalogRelation` to data source table if its table property contains data source information.
## How was this patch tested?
new test in SQLQuerySuite
Author: Wenchen Fan <wenchen@databricks.com>
Closes#12935 from cloud-fan/ds-table.
## What changes were proposed in this pull request?
1, Use `SparkSession` according to [SPARK-15031](https://issues.apache.org/jira/browse/SPARK-15031)
2, Update indent for `SparkContext` according to [SPARK-15134](https://issues.apache.org/jira/browse/SPARK-15134)
3, BTW, remove some duplicate space and add missing '.'
## How was this patch tested?
manual tests
Author: Zheng RuiFeng <ruifengz@foxmail.com>
Closes#13050 from zhengruifeng/use_sparksession.
## What changes were proposed in this pull request?
Seems db573fc743 did not remove withHiveSupport from readwrite.py
Author: Yin Huai <yhuai@databricks.com>
Closes#13069 from yhuai/fixPython.
## What changes were proposed in this pull request?
This PR adds native `SHOW CREATE TABLE` DDL command for data source tables. Support for Hive tables will be added in follow-up PR(s).
To show table creation DDL for data source tables created by CTAS statements, this PR also added partitioning and bucketing support for normal `CREATE TABLE ... USING ...` syntax.
## How was this patch tested?
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
A new test suite `ShowCreateTableSuite` is added in sql/hive package to test the new feature.
Author: Cheng Lian <lian@databricks.com>
Closes#12781 from liancheng/spark-14346-show-create-table.
## What changes were proposed in this pull request?
Break copyAndReset into two methods copy and reset instead of just one.
## How was this patch tested?
Existing Tests
Author: Sandeep Singh <sandeep@techaddict.me>
Closes#12936 from techaddict/SPARK-15080.
## What changes were proposed in this pull request?
This is a followup of https://github.com/apache/spark/pull/12851
Remove `SparkSession.withHiveSupport` in PySpark and instead use `SparkSession.builder. enableHiveSupport`
## How was this patch tested?
Existing tests.
Author: Sandeep Singh <sandeep@techaddict.me>
Closes#13063 from techaddict/SPARK-15072-followup.
## What changes were proposed in this pull request?
When a CSV begins with:
- `,,`
OR
- `"","",`
meaning that the first column names are either empty or blank strings and `header` is specified to be `true`, then the column name is replaced with `C` + the index number of that given column. For example, if you were to read in the CSV:
```
"","second column"
"hello", "there"
```
Then column names would become `"C0", "second column"`.
This behavior aligns with what currently happens when `header` is specified to be `false` in recent versions of Spark.
### Current Behavior in Spark <=1.6
In Spark <=1.6, a CSV with a blank column name becomes a blank string, `""`, meaning that this column cannot be accessed. However the CSV reads in without issue.
### Current Behavior in Spark 2.0
Spark throws a NullPointerError and will not read in the file.
#### Reproduction in 2.0
https://databricks-prod-cloudfront.cloud.databricks.com/public/4027ec902e239c93eaaa8714f173bcfc/346304/2828750690305044/484361/latest.html
## How was this patch tested?
A new test was added to `CSVSuite` to account for this issue. We then have asserts that test for being able to select both the empty column names as well as the regular column names.
Author: Bill Chambers <bill@databricks.com>
Author: Bill Chambers <wchambers@ischool.berkeley.edu>
Closes#13041 from anabranch/master.
## What changes were proposed in this pull request?
Before:
```sql
-- uses that location but issues a warning
CREATE TABLE my_tab LOCATION /some/path
-- deletes any existing data in the specified location
DROP TABLE my_tab
```
After:
```sql
-- uses that location but creates an EXTERNAL table instead
CREATE TABLE my_tab LOCATION /some/path
-- does not delete the data at /some/path
DROP TABLE my_tab
```
This patch essentially makes the `EXTERNAL` field optional. This is related to #13032.
## How was this patch tested?
New test in `DDLCommandSuite`.
Author: Andrew Or <andrew@databricks.com>
Closes#13060 from andrewor14/location-implies-external.
This PR:
* Corrects the documentation for the `properties` parameter, which is supposed to be a dictionary and not a list.
* Generally clarifies the Python docstring for DataFrameReader.jdbc() by pulling from the [Scala docstrings](b281377647/sql/core/src/main/scala/org/apache/spark/sql/DataFrameReader.scala (L201-L251)) and rephrasing things.
* Corrects minor Sphinx typos.
Author: Nicholas Chammas <nicholas.chammas@gmail.com>
Closes#13034 from nchammas/SPARK-15256.
## What changes were proposed in this pull request?
Before:
```sql
-- uses warehouse dir anyway
CREATE EXTERNAL TABLE my_tab
-- doesn't actually delete the data
DROP TABLE my_tab
```
After:
```sql
-- no location is provided, throws exception
CREATE EXTERNAL TABLE my_tab
-- creates an external table using that location
CREATE EXTERNAL TABLE my_tab LOCATION '/path/to/something'
-- doesn't delete the data, which is expected
DROP TABLE my_tab
```
## How was this patch tested?
New test in `DDLCommandSuite`
Author: Andrew Or <andrew@databricks.com>
Closes#13032 from andrewor14/create-external-table-location.
## What changes were proposed in this pull request?
Earlier we removed experimental tag for Scala/Java DataFrames, but haven't done so for Python. This patch removes the experimental flag for Python and declares them stable.
## How was this patch tested?
N/A.
Author: Reynold Xin <rxin@databricks.com>
Closes#13062 from rxin/SPARK-15278.
## What changes were proposed in this pull request?
Before:
Creating a hiveContext was failing
```python
from pyspark.sql import HiveContext
hc = HiveContext(sc)
```
with
```
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "spark-2.0/python/pyspark/sql/context.py", line 458, in __init__
sparkSession = SparkSession.withHiveSupport(sparkContext)
File "spark-2.0/python/pyspark/sql/session.py", line 192, in withHiveSupport
jsparkSession = sparkContext._jvm.SparkSession.withHiveSupport(sparkContext._jsc.sc())
File "spark-2.0/python/lib/py4j-0.9.2-src.zip/py4j/java_gateway.py", line 1048, in __getattr__
py4j.protocol.Py4JError: org.apache.spark.sql.SparkSession.withHiveSupport does not exist in the JVM
```
Now:
```python
>>> from pyspark.sql import HiveContext
>>> hc = HiveContext(sc)
>>> hc.range(0, 100)
DataFrame[id: bigint]
>>> hc.range(0, 100).count()
100
```
## How was this patch tested?
Existing Tests, tested manually in python shell
Author: Sandeep Singh <sandeep@techaddict.me>
Closes#13056 from techaddict/SPARK-15270.
## What changes were proposed in this pull request?
If an executor is still alive even after the scheduler has removed its metadata, we may receive a heartbeat from that executor and tell its block manager to reregister itself. If that happens, the block manager master will know about the executor, but the scheduler will not.
That is a dangerous situation, because when the executor does get disconnected later, the scheduler will not ask the block manager to also remove metadata for that executor. Later, when we try to clean up an RDD or a broadcast variable, we may try to send a message to that executor, triggering an exception.
## How was this patch tested?
Jenkins.
Author: Andrew Or <andrew@databricks.com>
Closes#13055 from andrewor14/block-manager-remove.
## What changes were proposed in this pull request?
When we acquire execution memory, we do a lot of things between shrinking the storage memory pool and enlarging the execution memory pool. In particular, we call `memoryStore.evictBlocksToFreeSpace`, which may do a lot of I/O and can throw exceptions. If an exception is thrown, the pool sizes on that executor will be in a bad state.
This patch minimizes the things we do between the two calls to make the resizing more atomic.
## How was this patch tested?
Jenkins.
Author: Andrew Or <andrew@databricks.com>
Closes#13039 from andrewor14/safer-pool.
Table partitions can be added with locations different from default warehouse location of a hive table.
`CREATE TABLE parquetTable (a int) PARTITIONED BY (b int) STORED AS parquet `
`ALTER TABLE parquetTable ADD PARTITION (b=1) LOCATION '/partition'`
Querying such a table throws error as the MetastoreFileCatalog does not list the added partition directory, it only lists the default base location.
```
[info] - SPARK-15248: explicitly added partitions should be readable *** FAILED *** (1 second, 8 milliseconds)
[info] java.util.NoSuchElementException: key not found: file:/Users/tdas/Projects/Spark/spark2/target/tmp/spark-b39ad224-c5d1-4966-8981-fb45a2066d61/partition
[info] at scala.collection.MapLike$class.default(MapLike.scala:228)
[info] at scala.collection.AbstractMap.default(Map.scala:59)
[info] at scala.collection.MapLike$class.apply(MapLike.scala:141)
[info] at scala.collection.AbstractMap.apply(Map.scala:59)
[info] at org.apache.spark.sql.execution.datasources.PartitioningAwareFileCatalog$$anonfun$listFiles$1.apply(PartitioningAwareFileCatalog.scala:59)
[info] at org.apache.spark.sql.execution.datasources.PartitioningAwareFileCatalog$$anonfun$listFiles$1.apply(PartitioningAwareFileCatalog.scala:55)
[info] at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
[info] at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
[info] at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
[info] at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
[info] at scala.collection.TraversableLike$class.map(TraversableLike.scala:234)
[info] at scala.collection.AbstractTraversable.map(Traversable.scala:104)
[info] at org.apache.spark.sql.execution.datasources.PartitioningAwareFileCatalog.listFiles(PartitioningAwareFileCatalog.scala:55)
[info] at org.apache.spark.sql.execution.datasources.FileSourceStrategy$.apply(FileSourceStrategy.scala:93)
[info] at org.apache.spark.sql.catalyst.planning.QueryPlanner$$anonfun$1.apply(QueryPlanner.scala:59)
[info] at org.apache.spark.sql.catalyst.planning.QueryPlanner$$anonfun$1.apply(QueryPlanner.scala:59)
[info] at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:434)
[info] at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:440)
[info] at org.apache.spark.sql.catalyst.planning.QueryPlanner.plan(QueryPlanner.scala:60)
[info] at org.apache.spark.sql.catalyst.planning.QueryPlanner.planLater(QueryPlanner.scala:55)
[info] at org.apache.spark.sql.execution.SparkStrategies$SpecialLimits$.apply(SparkStrategies.scala:55)
[info] at org.apache.spark.sql.catalyst.planning.QueryPlanner$$anonfun$1.apply(QueryPlanner.scala:59)
[info] at org.apache.spark.sql.catalyst.planning.QueryPlanner$$anonfun$1.apply(QueryPlanner.scala:59)
[info] at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:434)
[info] at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:440)
[info] at org.apache.spark.sql.catalyst.planning.QueryPlanner.plan(QueryPlanner.scala:60)
[info] at org.apache.spark.sql.execution.QueryExecution.sparkPlan$lzycompute(QueryExecution.scala:77)
[info] at org.apache.spark.sql.execution.QueryExecution.sparkPlan(QueryExecution.scala:75)
[info] at org.apache.spark.sql.execution.QueryExecution.executedPlan$lzycompute(QueryExecution.scala:82)
[info] at org.apache.spark.sql.execution.QueryExecution.executedPlan(QueryExecution.scala:82)
[info] at org.apache.spark.sql.QueryTest.assertEmptyMissingInput(QueryTest.scala:330)
[info] at org.apache.spark.sql.QueryTest.checkAnswer(QueryTest.scala:146)
[info] at org.apache.spark.sql.QueryTest.checkAnswer(QueryTest.scala:159)
[info] at org.apache.spark.sql.hive.ParquetMetastoreSuite$$anonfun$12$$anonfun$apply$mcV$sp$7$$anonfun$apply$mcV$sp$25.apply(parquetSuites.scala:554)
[info] at org.apache.spark.sql.hive.ParquetMetastoreSuite$$anonfun$12$$anonfun$apply$mcV$sp$7$$anonfun$apply$mcV$sp$25.apply(parquetSuites.scala:535)
[info] at org.apache.spark.sql.test.SQLTestUtils$class.withTempDir(SQLTestUtils.scala:125)
[info] at org.apache.spark.sql.hive.ParquetPartitioningTest.withTempDir(parquetSuites.scala:726)
[info] at org.apache.spark.sql.hive.ParquetMetastoreSuite$$anonfun$12$$anonfun$apply$mcV$sp$7.apply$mcV$sp(parquetSuites.scala:535)
[info] at org.apache.spark.sql.test.SQLTestUtils$class.withTable(SQLTestUtils.scala:166)
[info] at org.apache.spark.sql.hive.ParquetPartitioningTest.withTable(parquetSuites.scala:726)
[info] at org.apache.spark.sql.hive.ParquetMetastoreSuite$$anonfun$12.apply$mcV$sp(parquetSuites.scala:534)
[info] at org.apache.spark.sql.hive.ParquetMetastoreSuite$$anonfun$12.apply(parquetSuites.scala:534)
[info] at org.apache.spark.sql.hive.ParquetMetastoreSuite$$anonfun$12.apply(parquetSuites.scala:534)
```
The solution in this PR to get the paths to list from the partition spec and not rely on the default table path alone.
unit tests.
Author: Tathagata Das <tathagata.das1565@gmail.com>
Closes#13022 from tdas/SPARK-15248.
## What changes were proposed in this pull request?
Renaming the streaming-kafka artifact to include kafka version, in anticipation of needing a different artifact for later kafka versions
## How was this patch tested?
Unit tests
Author: cody koeninger <cody@koeninger.org>
Closes#12946 from koeninger/SPARK-15085.
## What changes were proposed in this pull request?
After SPARK-14669 it seems the sort time metric includes both spill and record insertion time. This makes it not very useful since the metric becomes close to the total execution time of the node.
We should track just the time spent for in-memory sort, as before.
## How was this patch tested?
Verified metric in the UI, also unit test on UnsafeExternalRowSorter.
cc davies
Author: Eric Liang <ekl@databricks.com>
Author: Eric Liang <ekhliang@gmail.com>
Closes#13035 from ericl/fix-metrics.
## What changes were proposed in this pull request?
Use SparkSession instead of SQLContext in Python TestSuites
## How was this patch tested?
Existing tests
Author: Sandeep Singh <sandeep@techaddict.me>
Closes#13044 from techaddict/SPARK-15037-python.
## What changes were proposed in this pull request?
SPARK-15241: We now support java decimal and catalyst decimal in external row, it makes sense to also support scala decimal.
SPARK-15242: This is a long-standing bug, and is exposed after https://github.com/apache/spark/pull/12364, which eliminate the `If` expression if the field is not nullable:
```
val fieldValue = serializerFor(
GetExternalRowField(inputObject, i, externalDataTypeForInput(f.dataType)),
f.dataType)
if (f.nullable) {
If(
Invoke(inputObject, "isNullAt", BooleanType, Literal(i) :: Nil),
Literal.create(null, f.dataType),
fieldValue)
} else {
fieldValue
}
```
Previously, we always use `DecimalType.SYSTEM_DEFAULT` as the output type of converted decimal field, which is wrong as it doesn't match the real decimal type. However, it works well because we always put converted field into `If` expression to do the null check, and `If` use its `trueValue`'s data type as its output type.
Now if we have a not nullable decimal field, then the converted field's output type will be `DecimalType.SYSTEM_DEFAULT`, and we will write wrong data into unsafe row.
The fix is simple, just use the given decimal type as the output type of converted decimal field.
These 2 issues was found at https://github.com/apache/spark/pull/13008
## How was this patch tested?
new tests in RowEncoderSuite
Author: Wenchen Fan <wenchen@databricks.com>
Closes#13019 from cloud-fan/encoder-decimal.
## What changes were proposed in this pull request?
This fixes compile errors.
## How was this patch tested?
Pass the Jenkins tests.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#13053 from dongjoon-hyun/hotfix_sqlquerysuite.
## What changes were proposed in this pull request?
We have a private `UDTRegistration` API to register user defined type. Currently `JavaTypeInference` can't work with it. So `SparkSession.createDataFrame` from a bean class will not correctly infer the schema of the bean class.
## How was this patch tested?
`VectorUDTSuite`.
Author: Liang-Chi Hsieh <simonh@tw.ibm.com>
Closes#13046 from viirya/fix-udt-registry-javatypeinference.
## What changes were proposed in this pull request?
#### Symptom
If a table is created as parquet or ORC table with hive syntaxt DDL, such as
```SQL
create table t1 (c1 int, c2 string) stored as parquet
```
The following command will fail
```SQL
create view v1 as select * from t1
```
#### Root Cause
Currently, `HiveMetaStoreCatalog` converts Paruqet/Orc tables to `LogicalRelation` without giving any `tableIdentifier`. `SQLBuilder` expects the `LogicalRelation` to have an associated `tableIdentifier`. However, the `LogicalRelation` created earlier does not have such a `tableIdentifier`. Thus, `SQLBuilder.toSQL` can not recognize this logical plan and issue an exception.
This PR is to assign a `TableIdentifier` to the `LogicalRelation` when resolving parquet or orc tables in `HiveMetaStoreCatalog`.
## How was this patch tested?
testcases created and dev/run-tests is run.
Author: xin Wu <xinwu@us.ibm.com>
Closes#12716 from xwu0226/SPARK_14933.
## What changes were proposed in this pull request?
1,create a libsvm-type dataset for lda: `data/mllib/sample_lda_libsvm_data.txt`
2,add python example
3,directly read the datafile in examples
4,BTW, change to `SparkSession` in `aft_survival_regression.py`
## How was this patch tested?
manual tests
`./bin/spark-submit examples/src/main/python/ml/lda_example.py`
Author: Zheng RuiFeng <ruifengz@foxmail.com>
Closes#12927 from zhengruifeng/lda_pe.
This PR:
* Clarifies that Spark *does* support Python 3, starting with Python 3.4.
Author: Nicholas Chammas <nicholas.chammas@gmail.com>
Closes#13017 from nchammas/supported-python-versions.
## What changes were proposed in this pull request?
make StreamingContext.textFileStream support wildcard
like /home/user/*/file
## How was this patch tested?
I did manual test and added a new unit test case
Author: mwws <wei.mao@intel.com>
Author: unknown <maowei@maowei-MOBL.ccr.corp.intel.com>
Closes#12752 from mwws/SPARK_FileStream.
## What changes were proposed in this pull request?
Python example for ml.kmeans already exists, but not included in user guide.
1,small changes like: `example_on` `example_off`
2,add it to user guide
3,update examples to directly read datafile
## How was this patch tested?
manual tests
`./bin/spark-submit examples/src/main/python/ml/kmeans_example.py
Author: Zheng RuiFeng <ruifengz@foxmail.com>
Closes#12925 from zhengruifeng/km_pe.
## What changes were proposed in this pull request?
1, add BisectingKMeans to ml-clustering.md
2, add the missing Scala BisectingKMeansExample
3, create a new datafile `data/mllib/sample_kmeans_data.txt`
## How was this patch tested?
manual tests
Author: Zheng RuiFeng <ruifengz@foxmail.com>
Closes#11844 from zhengruifeng/doc_bkm.
## What changes were proposed in this pull request?
1, Add python example for OneVsRest
2, remove args-parsing
## How was this patch tested?
manual tests
`./bin/spark-submit examples/src/main/python/ml/one_vs_rest_example.py`
Author: Zheng RuiFeng <ruifengz@foxmail.com>
Closes#12920 from zhengruifeng/ovr_pe.
## What changes were proposed in this pull request?
This PR adds documents about the different behaviors between `insertInto` and `saveAsTable`, and throws an exception when the user try to add too man columns using `saveAsTable with append`.
## How was this patch tested?
Unit tests added in this PR.
Author: Shixiong Zhu <shixiong@databricks.com>
Closes#13013 from zsxwing/SPARK-15231.
## What changes were proposed in this pull request?
Fix doctest issue, short param description, and tag items as Experimental
## How was this patch tested?
build docs locally & doctests
Author: Holden Karau <holden@us.ibm.com>
Closes#12964 from holdenk/SPARK-15189-ml.Evaluation-PyDoc-issues.
## What changes were proposed in this pull request?
To extract job descriptions and stage name, there are following regular expressions in timeline-view.js
```
var jobIdText = $($(baseElem).find(".application-timeline-content")[0]).text();
var jobId = jobIdText.match("\\(Job (\\d+)\\)")[1];
...
var stageIdText = $($(baseElem).find(".job-timeline-content")[0]).text();
var stageIdAndAttempt = stageIdText.match("\\(Stage (\\d+\\.\\d+)\\)")[1].split(".");
```
But if job descriptions include patterns like "(Job x)" or stage names include patterns like "(Stage x.y)", the regular expressions cannot be match as we expected, ending up with corresponding row cannot be highlighted even though we move the cursor onto the job on Web UI's timeline.
## How was this patch tested?
Manually tested with spark-shell and Web UI.
Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp>
Closes#13016 from sarutak/SPARK-15235.
## What changes were proposed in this pull request?
1. Fix code style
2. remove volatile of elementsRead method because there is only one thread to use it.
3. avoid volatile of _elementsRead because Collection increases number of _elementsRead when it insert a element. It is very expensive. So we can avoid it.
After this PR, I will push another PR for branch 1.6.
## How was this patch tested?
unit tests
Author: Lianhui Wang <lianhuiwang09@gmail.com>
Closes#13020 from lianhuiwang/SPARK-4452-hotfix.
## What changes were proposed in this pull request?
We use the tree string of an SparkPlan as the name of cached DataFrame, that could be very long, cause the browser to be not responsive. This PR will limit the length of the name to 1000 characters.
## How was this patch tested?
Here is how the UI looks right now:
Author: Davies Liu <davies@databricks.com>
Closes#13033 from davies/cache_name.
## What changes were proposed in this pull request?
This issue fixes the error message indentation consistently with other set queries (EXCEPT/INTERSECT).
**Before (4 lines)**
```
scala> sql("(select 1) union (select 1, 2)").head
org.apache.spark.sql.AnalysisException:
Unions can only be performed on tables with the same number of columns,
but one table has '2' columns and another table has
'1' columns;
```
**After (one-line)**
```
scala> sql("(select 1) union (select 1, 2)").head
org.apache.spark.sql.AnalysisException: Unions can only be performed on tables with the same number of columns, but one table has '2' columns and another table has '1' columns;
```
**Reference (EXCEPT / INTERSECT)**
```
scala> sql("(select 1) intersect (select 1, 2)").head
org.apache.spark.sql.AnalysisException: Intersect can only be performed on tables with the same number of columns, but the left table has 1 columns and the right has 2;
```
## How was this patch tested?
Manual.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#13043 from dongjoon-hyun/SPARK-15265.
## What changes were proposed in this pull request?
This PR removes the old `json(path: String)` API which is covered by the new `json(paths: String*)`.
## How was this patch tested?
Jenkins tests (existing tests should cover this)
Author: hyukjinkwon <gurwls223@gmail.com>
Author: Hyukjin Kwon <gurwls223@gmail.com>
Closes#13040 from HyukjinKwon/SPARK-15250.
## What changes were proposed in this pull request?
This patch removes experimental tag from DataFrameReader and DataFrameWriter, and explicitly tags a few methods added for structured streaming as experimental.
## How was this patch tested?
N/A
Author: Reynold Xin <rxin@databricks.com>
Closes#13038 from rxin/SPARK-15261.
## What changes were proposed in this pull request?
Currently, file stream source can only find new files if they appear in the directory given to the source, but not if they appear in subdirs. This PR add support for providing glob patterns when creating file stream source so that it can find new files in nested directories based on the glob pattern.
## How was this patch tested?
Unit test that tests when new files are discovered with globs and partitioned directories.
Author: Tathagata Das <tathagata.das1565@gmail.com>
Closes#12616 from tdas/SPARK-14837.
