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2085 commits

Author SHA1 Message Date
Shahid a4b14a9cf8 [SPARK-25623][SPARK-25624][SPARK-25625][TEST] Reduce test time of LogisticRegressionSuite
...with intercept with L1 regularization

## What changes were proposed in this pull request?

In the test, "multinomial logistic regression with intercept with L1 regularization" in the "LogisticRegressionSuite", taking more than a minute due to training of 2 logistic regression model.
However after analysing the training cost over iteration, we can reduce the computation time by 50%.
Training cost vs iteration for model 1
![image](https://user-images.githubusercontent.com/23054875/46573805-ddab7680-c9b7-11e8-9ee9-63a99d498475.png)

So, model1 is converging after iteration 150.

Training cost vs iteration for model 2

![image](https://user-images.githubusercontent.com/23054875/46573790-b3f24f80-c9b7-11e8-89c0-81045ad647cb.png)

After around 100 iteration, model2 is converging.
So, if we give maximum iteration for model1 and model2 as 175 and 125 respectively, we can reduce the computation time by half.

## How was this patch tested?
Computation time in local setup :
Before change:
~53 sec
After change:
~26 sec

Please review http://spark.apache.org/contributing.html before opening a pull request.

Closes #22659 from shahidki31/SPARK-25623.

Authored-by: Shahid <shahidki31@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-10-08 19:07:05 -05:00
WeichenXu ebd899b8a8
[SPARK-25321][ML] Revert SPARK-14681 to avoid API breaking change
## What changes were proposed in this pull request?

This is the same as #22492 but for master branch. Revert SPARK-14681 to avoid API breaking changes.

cc: WeichenXu123

## How was this patch tested?

Existing unit tests.

Closes #22618 from mengxr/SPARK-25321.master.

Authored-by: WeichenXu <weichen.xu@databricks.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-10-07 10:06:44 -07:00
Gengliang Wang 7b4e94f160
[SPARK-25581][SQL] Rename method benchmark as runBenchmarkSuite in BenchmarkBase
## What changes were proposed in this pull request?

Rename method `benchmark` in `BenchmarkBase` as `runBenchmarkSuite `. Also add comments.
Currently the method name `benchmark` is a bit confusing. Also the name is the same as instances of `Benchmark`:

f246813afb/sql/hive/src/test/scala/org/apache/spark/sql/hive/orc/OrcReadBenchmark.scala (L330-L339)

## How was this patch tested?

Unit test.

Closes #22599 from gengliangwang/renameBenchmarkSuite.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-10-02 10:04:47 -07:00
gatorsmile 9bf397c0e4 [SPARK-25592] Setting version to 3.0.0-SNAPSHOT
## What changes were proposed in this pull request?

This patch is to bump the master branch version to 3.0.0-SNAPSHOT.

## How was this patch tested?
N/A

Closes #22606 from gatorsmile/bump3.0.

Authored-by: gatorsmile <gatorsmile@gmail.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2018-10-02 08:48:24 -07:00
hyukjinkwon a2f502cf53 [SPARK-25565][BUILD] Add scalastyle rule to check add Locale.ROOT to .toLowerCase and .toUpperCase for internal calls
## What changes were proposed in this pull request?

This PR adds a rule to force `.toLowerCase(Locale.ROOT)` or `toUpperCase(Locale.ROOT)`.

It produces an error as below:

```
[error]       Are you sure that you want to use toUpperCase or toLowerCase without the root locale? In most cases, you
[error]       should use toUpperCase(Locale.ROOT) or toLowerCase(Locale.ROOT) instead.
[error]       If you must use toUpperCase or toLowerCase without the root locale, wrap the code block with
[error]       // scalastyle:off caselocale
[error]       .toUpperCase
[error]       .toLowerCase
[error]       // scalastyle:on caselocale
```

This PR excludes the cases above for SQL code path for external calls like table name, column name and etc.

For test suites, or when it's clear there's no locale problem like Turkish locale problem, it uses `Locale.ROOT`.

One minor problem is, `UTF8String` has both methods, `toLowerCase` and `toUpperCase`, and the new rule detects them as well. They are ignored.

## How was this patch tested?

Manually tested, and Jenkins tests.

Closes #22581 from HyukjinKwon/SPARK-25565.

Authored-by: hyukjinkwon <gurwls223@apache.org>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-09-30 14:31:04 +08:00
seancxmao 9bf04d8543
[SPARK-25489][ML][TEST] Refactor UDTSerializationBenchmark
## What changes were proposed in this pull request?
Refactor `UDTSerializationBenchmark` to use main method and print the output as a separate file.

Run blow command to generate benchmark results:

```
SPARK_GENERATE_BENCHMARK_FILES=1 build/sbt "mllib/test:runMain org.apache.spark.mllib.linalg.UDTSerializationBenchmark"
```

## How was this patch tested?
Manual tests.

Closes #22499 from seancxmao/SPARK-25489.

Authored-by: seancxmao <seancxmao@gmail.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-09-23 13:34:06 -07:00
WeichenXu 40edab209b [SPARK-25321][ML] Fix local LDA model constructor
## What changes were proposed in this pull request?

change back the constructor to:
```
class LocalLDAModel private[ml] (
    uid: String,
    vocabSize: Int,
    private[clustering] val oldLocalModel : OldLocalLDAModel,
    sparkSession: SparkSession)
```

Although it is marked `private[ml]`, it is used in `mleap` and the master change breaks `mleap` building.
See mleap code [here](c7860af328/mleap-spark/src/main/scala/org/apache/spark/ml/bundle/ops/clustering/LDAModelOp.scala (L57))
## How was this patch tested?

Manual.

Closes #22510 from WeichenXu123/LDA_fix.

Authored-by: WeichenXu <weichen.xu@databricks.com>
Signed-off-by: Xiangrui Meng <meng@databricks.com>
2018-09-21 13:08:01 -07:00
Gengliang Wang d25f425c96 [SPARK-25499][TEST] Refactor BenchmarkBase and Benchmark
## What changes were proposed in this pull request?

Currently there are two classes with the same naming BenchmarkBase:
1. `org.apache.spark.util.BenchmarkBase`
2. `org.apache.spark.sql.execution.benchmark.BenchmarkBase`

This is very confusing. And the benchmark object `org.apache.spark.sql.execution.benchmark.FilterPushdownBenchmark` is using the one in `org.apache.spark.util.BenchmarkBase`, while there is another class `BenchmarkBase` in the same package of it...

Here I propose:
1. the package `org.apache.spark.util.BenchmarkBase` should be in test package of core module. Move it to package `org.apache.spark.benchmark` .
2. Move `org.apache.spark.util.Benchmark` to test package of core module. Move it to package `org.apache.spark.benchmark` .
3. Rename the class `org.apache.spark.sql.execution.benchmark.BenchmarkBase` as `BenchmarkWithCodegen`

## How was this patch tested?

Unit test

Closes #22513 from gengliangwang/refactorBenchmarkBase.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-09-21 22:20:55 +08:00
WeichenXu 6f681d4296 [SPARK-22666][ML][FOLLOW-UP] Improve testcase to tolerate different schema representation
## What changes were proposed in this pull request?

Improve testcase "image datasource test: read non image" to tolerate different schema representation.
Because file:/path and file:///path are both valid URI-ifications so in some environment the testcase will fail.

## How was this patch tested?

Manual.

Closes #22449 from WeichenXu123/image_url.

Authored-by: WeichenXu <weichen.xu@databricks.com>
Signed-off-by: Xiangrui Meng <meng@databricks.com>
2018-09-19 15:16:20 -07:00
gatorsmile bb2f069cf2 [SPARK-25436] Bump master branch version to 2.5.0-SNAPSHOT
## What changes were proposed in this pull request?
In the dev list, we can still discuss whether the next version is 2.5.0 or 3.0.0. Let us first bump the master branch version to `2.5.0-SNAPSHOT`.

## How was this patch tested?
N/A

Closes #22426 from gatorsmile/bumpVersionMaster.

Authored-by: gatorsmile <gatorsmile@gmail.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2018-09-15 16:24:02 -07:00
Marco Gaido 0736e72a66 [SPARK-25371][SQL] struct() should allow being called with 0 args
## What changes were proposed in this pull request?

SPARK-21281 introduced a check for the inputs of `CreateStructLike` to be non-empty. This means that `struct()`, which was previously considered valid, now throws an Exception.  This behavior change was introduced in 2.3.0. The change may break users' application on upgrade and it causes `VectorAssembler` to fail when an empty `inputCols` is defined.

The PR removes the added check making `struct()` valid again.

## How was this patch tested?

added UT

Closes #22373 from mgaido91/SPARK-25371.

Authored-by: Marco Gaido <marcogaido91@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-09-11 14:16:56 +08:00
WeichenXu 88a930dfab [MINOR][ML] Remove BisectingKMeansModel.setDistanceMeasure method
## What changes were proposed in this pull request?

Remove `BisectingKMeansModel.setDistanceMeasure` method.
In `BisectingKMeansModel` set this param is meaningless.

## How was this patch tested?

N/A

Closes #22360 from WeichenXu123/bkmeans_update.

Authored-by: WeichenXu <weichen.xu@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-09-09 09:49:13 -05:00
gatorsmile 0b9ccd55c2 Revert [SPARK-10399] [SPARK-23879] [SPARK-23762] [SPARK-25317]
## What changes were proposed in this pull request?

When running TPC-DS benchmarks on 2.4 release, npoggi and winglungngai  saw more than 10% performance regression on the following queries: q67, q24a and q24b. After we applying the PR https://github.com/apache/spark/pull/22338, the performance regression still exists. If we revert the changes in https://github.com/apache/spark/pull/19222, npoggi and winglungngai  found the performance regression was resolved. Thus, this PR is to revert the related changes for unblocking the 2.4 release.

In the future release, we still can continue the investigation and find out the root cause of the regression.

## How was this patch tested?

The existing test cases

Closes #22361 from gatorsmile/revertMemoryBlock.

Authored-by: gatorsmile <gatorsmile@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-09-09 21:25:19 +08:00
WeichenXu 08c02e637a [SPARK-25345][ML] Deprecate public APIs from ImageSchema
## What changes were proposed in this pull request?

Deprecate public APIs from ImageSchema.

## How was this patch tested?

N/A

Closes #22349 from WeichenXu123/image_api_deprecate.

Authored-by: WeichenXu <weichen.xu@databricks.com>
Signed-off-by: Xiangrui Meng <meng@databricks.com>
2018-09-08 09:09:14 -07:00
Dilip Biswal 6d7bc5af45 [SPARK-25267][SQL][TEST] Disable ConvertToLocalRelation in the test cases of sql/core and sql/hive
## What changes were proposed in this pull request?
In SharedSparkSession and TestHive, we need to disable the rule ConvertToLocalRelation for better test case coverage.
## How was this patch tested?
Identify the failures after excluding "ConvertToLocalRelation" rule.

Closes #22270 from dilipbiswal/SPARK-25267-final.

Authored-by: Dilip Biswal <dbiswal@us.ibm.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2018-09-06 23:35:02 -07:00
Yuming Wang 3e033035a3 [SPARK-25258][SPARK-23131][SPARK-25176][BUILD] Upgrade Kryo to 4.0.2
## What changes were proposed in this pull request?

Upgrade chill to 0.9.3, Kryo to 4.0.2, to get bug fixes and improvements.

The resolved tickets includes:
- SPARK-25258 Upgrade kryo package to version 4.0.2
- SPARK-23131 Kryo raises StackOverflow during serializing GLR model
- SPARK-25176 Kryo fails to serialize a parametrised type hierarchy

More details:
https://github.com/twitter/chill/releases/tag/v0.9.3
cc3910d501

## How was this patch tested?

Existing tests.

Closes #22179 from wangyum/SPARK-23131.

Lead-authored-by: Yuming Wang <yumwang@ebay.com>
Co-authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-09-05 15:48:41 -07:00
WeichenXu 925449283d [SPARK-22666][ML][SQL] Spark datasource for image format
## What changes were proposed in this pull request?

Implement an image schema datasource.

This image datasource support:
  - partition discovery (loading partitioned images)
  - dropImageFailures (the same behavior with `ImageSchema.readImage`)
  - path wildcard matching (the same behavior with `ImageSchema.readImage`)
  - loading recursively from directory (different from `ImageSchema.readImage`, but use such path: `/path/to/dir/**`)

This datasource **NOT** support:
  - specify `numPartitions` (it will be determined by datasource automatically)
  - sampling (you can use `df.sample` later but the sampling operator won't be pushdown to datasource)

## How was this patch tested?
Unit tests.

## Benchmark
I benchmark and compare the cost time between old `ImageSchema.read` API and my image datasource.

**cluster**: 4 nodes, each with 64GB memory, 8 cores CPU
**test dataset**: Flickr8k_Dataset (about 8091 images)

**time cost**:
- My image datasource time (automatically generate 258 partitions):  38.04s
- `ImageSchema.read` time (set 16 partitions): 68.4s
- `ImageSchema.read` time (set 258 partitions):  90.6s

**time cost when increase image number by double (clone Flickr8k_Dataset and loads double number images)**:
- My image datasource time (automatically generate 515 partitions):  95.4s
- `ImageSchema.read` (set 32 partitions): 109s
- `ImageSchema.read` (set 515 partitions):  105s

So we can see that my image datasource implementation (this PR) bring some performance improvement compared against old`ImageSchema.read` API.

Closes #22328 from WeichenXu123/image_datasource.

Authored-by: WeichenXu <weichen.xu@databricks.com>
Signed-off-by: Xiangrui Meng <meng@databricks.com>
2018-09-05 11:59:00 -07:00
Marco Gaido a3dccd24c2 [SPARK-10697][ML] Add lift to Association rules
## What changes were proposed in this pull request?

The PR adds the lift measure to Association rules.

## How was this patch tested?

existing and modified UTs

Closes #22236 from mgaido91/SPARK-10697.

Authored-by: Marco Gaido <marcogaido91@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-09-01 18:07:58 -05:00
Marco Gaido 6ad8d4c375 [SPARK-25289][ML] Avoid exception in ChiSqSelector with FDR when no feature is selected
## What changes were proposed in this pull request?

Currently, when FDR is used for `ChiSqSelector` and no feature is selected an exception is thrown because the max operation fails.

The PR fixes the problem by handling this case and returning an empty array in that case, as sklearn (which was the reference for the initial implementation of FDR) does.

## How was this patch tested?

added UT

Closes #22303 from mgaido91/SPARK-25289.

Authored-by: Marco Gaido <marcogaido91@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-09-01 08:41:07 -05:00
Marco Gaido 55f36641ff [SPARK-25093][SQL] Avoid recompiling regexp for comments multiple times
## What changes were proposed in this pull request?

The PR moves the compilation of the regexp for code formatting outside the method which is called for each code block when splitting expressions, in order to avoid recompiling the regexp every time.

Credit should be given to Izek Greenfield.

## How was this patch tested?

existing UTs

Closes #22135 from mgaido91/SPARK-25093.

Authored-by: Marco Gaido <marcogaido91@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-08-22 14:31:51 +08:00
Liang-Chi Hsieh 8b0e94d896
[SPARK-23042][ML] Use OneHotEncoderModel to encode labels in MultilayerPerceptronClassifier
## What changes were proposed in this pull request?

In MultilayerPerceptronClassifier, we use RDD operation to encode labels for now. I think we should use ML's OneHotEncoderEstimator/Model to do the encoding.

## How was this patch tested?

Existing tests.

Closes #20232 from viirya/SPARK-23042.

Authored-by: Liang-Chi Hsieh <viirya@gmail.com>
Signed-off-by: DB Tsai <d_tsai@apple.com>
2018-08-17 18:40:29 +00:00
zhengruifeng e50192494d [SPARK-24555][ML] logNumExamples in KMeans/BiKM/GMM/AFT/NB
## What changes were proposed in this pull request?
logNumExamples in KMeans/BiKM/GMM/AFT/NB

## How was this patch tested?
existing tests

Closes #21561 from zhengruifeng/alg_logNumExamples.

Authored-by: zhengruifeng <ruifengz@foxmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-08-16 15:23:32 -07:00
Liang-Chi Hsieh 3eb52092b3
[SPARK-22974][ML] Attach attributes to output column of CountVectorModel
## What changes were proposed in this pull request?

The output column from `CountVectorModel` lacks attribute. So a later transformer like `Interaction` can raise error because no attribute available.

## How was this patch tested?

Added test.

Please review http://spark.apache.org/contributing.html before opening a pull request.

Closes #20313 from viirya/SPARK-22974.

Authored-by: Liang-Chi Hsieh <viirya@gmail.com>
Signed-off-by: DB Tsai <d_tsai@apple.com>
2018-08-14 05:05:16 +00:00
Kazuhiro Sera 8ec25cd67e Fix typos detected by github.com/client9/misspell
## What changes were proposed in this pull request?

Fixing typos is sometimes very hard. It's not so easy to visually review them. Recently, I discovered a very useful tool for it, [misspell](https://github.com/client9/misspell).

This pull request fixes minor typos detected by [misspell](https://github.com/client9/misspell) except for the false positives. If you would like me to work on other files as well, let me know.

## How was this patch tested?

### before

```
$ misspell . | grep -v '.js'
R/pkg/R/SQLContext.R:354:43: "definiton" is a misspelling of "definition"
R/pkg/R/SQLContext.R:424:43: "definiton" is a misspelling of "definition"
R/pkg/R/SQLContext.R:445:43: "definiton" is a misspelling of "definition"
R/pkg/R/SQLContext.R:495:43: "definiton" is a misspelling of "definition"
NOTICE-binary:454:16: "containd" is a misspelling of "contained"
R/pkg/R/context.R:46:43: "definiton" is a misspelling of "definition"
R/pkg/R/context.R:74:43: "definiton" is a misspelling of "definition"
R/pkg/R/DataFrame.R:591:48: "persistance" is a misspelling of "persistence"
R/pkg/R/streaming.R:166:44: "occured" is a misspelling of "occurred"
R/pkg/inst/worker/worker.R:65:22: "ouput" is a misspelling of "output"
R/pkg/tests/fulltests/test_utils.R:106:25: "environemnt" is a misspelling of "environment"
common/kvstore/src/test/java/org/apache/spark/util/kvstore/InMemoryStoreSuite.java:38:39: "existant" is a misspelling of "existent"
common/kvstore/src/test/java/org/apache/spark/util/kvstore/LevelDBSuite.java:83:39: "existant" is a misspelling of "existent"
common/network-common/src/main/java/org/apache/spark/network/crypto/TransportCipher.java:243:46: "transfered" is a misspelling of "transferred"
common/network-common/src/main/java/org/apache/spark/network/sasl/SaslEncryption.java:234:19: "transfered" is a misspelling of "transferred"
common/network-common/src/main/java/org/apache/spark/network/sasl/SaslEncryption.java:238:63: "transfered" is a misspelling of "transferred"
common/network-common/src/main/java/org/apache/spark/network/sasl/SaslEncryption.java:244:46: "transfered" is a misspelling of "transferred"
common/network-common/src/main/java/org/apache/spark/network/sasl/SaslEncryption.java:276:39: "transfered" is a misspelling of "transferred"
common/network-common/src/main/java/org/apache/spark/network/util/AbstractFileRegion.java:27:20: "transfered" is a misspelling of "transferred"
common/unsafe/src/test/scala/org/apache/spark/unsafe/types/UTF8StringPropertyCheckSuite.scala:195:15: "orgin" is a misspelling of "origin"
core/src/main/scala/org/apache/spark/api/python/PythonRDD.scala:621:39: "gauranteed" is a misspelling of "guaranteed"
core/src/main/scala/org/apache/spark/status/storeTypes.scala:113:29: "ect" is a misspelling of "etc"
core/src/main/scala/org/apache/spark/storage/DiskStore.scala:282:18: "transfered" is a misspelling of "transferred"
core/src/main/scala/org/apache/spark/util/ListenerBus.scala:64:17: "overriden" is a misspelling of "overridden"
core/src/test/scala/org/apache/spark/ShuffleSuite.scala:211:7: "substracted" is a misspelling of "subtracted"
core/src/test/scala/org/apache/spark/scheduler/DAGSchedulerSuite.scala:1922:49: "agriculteur" is a misspelling of "agriculture"
core/src/test/scala/org/apache/spark/scheduler/DAGSchedulerSuite.scala:2468:84: "truely" is a misspelling of "truly"
core/src/test/scala/org/apache/spark/storage/FlatmapIteratorSuite.scala:25:18: "persistance" is a misspelling of "persistence"
core/src/test/scala/org/apache/spark/storage/FlatmapIteratorSuite.scala:26:69: "persistance" is a misspelling of "persistence"
data/streaming/AFINN-111.txt:1219:0: "humerous" is a misspelling of "humorous"
dev/run-pip-tests:55:28: "enviroments" is a misspelling of "environments"
dev/run-pip-tests:91:37: "virutal" is a misspelling of "virtual"
dev/merge_spark_pr.py:377:72: "accross" is a misspelling of "across"
dev/merge_spark_pr.py:378:66: "accross" is a misspelling of "across"
dev/run-pip-tests:126:25: "enviroments" is a misspelling of "environments"
docs/configuration.md:1830:82: "overriden" is a misspelling of "overridden"
docs/structured-streaming-programming-guide.md:525:45: "processs" is a misspelling of "processes"
docs/structured-streaming-programming-guide.md:1165:61: "BETWEN" is a misspelling of "BETWEEN"
docs/sql-programming-guide.md:1891:810: "behaivor" is a misspelling of "behavior"
examples/src/main/python/sql/arrow.py:98:8: "substract" is a misspelling of "subtract"
examples/src/main/python/sql/arrow.py:103:27: "substract" is a misspelling of "subtract"
licenses/LICENSE-heapq.txt:5:63: "Stichting" is a misspelling of "Stitching"
licenses/LICENSE-heapq.txt:6:2: "Mathematisch" is a misspelling of "Mathematics"
licenses/LICENSE-heapq.txt:262:29: "Stichting" is a misspelling of "Stitching"
licenses/LICENSE-heapq.txt:262:39: "Mathematisch" is a misspelling of "Mathematics"
licenses/LICENSE-heapq.txt:269:49: "Stichting" is a misspelling of "Stitching"
licenses/LICENSE-heapq.txt:269:59: "Mathematisch" is a misspelling of "Mathematics"
licenses/LICENSE-heapq.txt:274:2: "STICHTING" is a misspelling of "STITCHING"
licenses/LICENSE-heapq.txt:274:12: "MATHEMATISCH" is a misspelling of "MATHEMATICS"
licenses/LICENSE-heapq.txt:276:29: "STICHTING" is a misspelling of "STITCHING"
licenses/LICENSE-heapq.txt:276:39: "MATHEMATISCH" is a misspelling of "MATHEMATICS"
licenses-binary/LICENSE-heapq.txt:5:63: "Stichting" is a misspelling of "Stitching"
licenses-binary/LICENSE-heapq.txt:6:2: "Mathematisch" is a misspelling of "Mathematics"
licenses-binary/LICENSE-heapq.txt:262:29: "Stichting" is a misspelling of "Stitching"
licenses-binary/LICENSE-heapq.txt:262:39: "Mathematisch" is a misspelling of "Mathematics"
licenses-binary/LICENSE-heapq.txt:269:49: "Stichting" is a misspelling of "Stitching"
licenses-binary/LICENSE-heapq.txt:269:59: "Mathematisch" is a misspelling of "Mathematics"
licenses-binary/LICENSE-heapq.txt:274:2: "STICHTING" is a misspelling of "STITCHING"
licenses-binary/LICENSE-heapq.txt:274:12: "MATHEMATISCH" is a misspelling of "MATHEMATICS"
licenses-binary/LICENSE-heapq.txt:276:29: "STICHTING" is a misspelling of "STITCHING"
licenses-binary/LICENSE-heapq.txt:276:39: "MATHEMATISCH" is a misspelling of "MATHEMATICS"
mllib/src/main/resources/org/apache/spark/ml/feature/stopwords/hungarian.txt:170:0: "teh" is a misspelling of "the"
mllib/src/main/resources/org/apache/spark/ml/feature/stopwords/portuguese.txt:53:0: "eles" is a misspelling of "eels"
mllib/src/main/scala/org/apache/spark/ml/stat/Summarizer.scala:99:20: "Euclidian" is a misspelling of "Euclidean"
mllib/src/main/scala/org/apache/spark/ml/stat/Summarizer.scala:539:11: "Euclidian" is a misspelling of "Euclidean"
mllib/src/main/scala/org/apache/spark/mllib/clustering/LDAOptimizer.scala:77:36: "Teh" is a misspelling of "The"
mllib/src/main/scala/org/apache/spark/mllib/clustering/StreamingKMeans.scala:230:24: "inital" is a misspelling of "initial"
mllib/src/main/scala/org/apache/spark/mllib/stat/MultivariateOnlineSummarizer.scala:276:9: "Euclidian" is a misspelling of "Euclidean"
mllib/src/test/scala/org/apache/spark/ml/clustering/KMeansSuite.scala:237:26: "descripiton" is a misspelling of "descriptions"
python/pyspark/find_spark_home.py:30:13: "enviroment" is a misspelling of "environment"
python/pyspark/context.py:937:12: "supress" is a misspelling of "suppress"
python/pyspark/context.py:938:12: "supress" is a misspelling of "suppress"
python/pyspark/context.py:939:12: "supress" is a misspelling of "suppress"
python/pyspark/context.py:940:12: "supress" is a misspelling of "suppress"
python/pyspark/heapq3.py:6:63: "Stichting" is a misspelling of "Stitching"
python/pyspark/heapq3.py:7:2: "Mathematisch" is a misspelling of "Mathematics"
python/pyspark/heapq3.py:263:29: "Stichting" is a misspelling of "Stitching"
python/pyspark/heapq3.py:263:39: "Mathematisch" is a misspelling of "Mathematics"
python/pyspark/heapq3.py:270:49: "Stichting" is a misspelling of "Stitching"
python/pyspark/heapq3.py:270:59: "Mathematisch" is a misspelling of "Mathematics"
python/pyspark/heapq3.py:275:2: "STICHTING" is a misspelling of "STITCHING"
python/pyspark/heapq3.py:275:12: "MATHEMATISCH" is a misspelling of "MATHEMATICS"
python/pyspark/heapq3.py:277:29: "STICHTING" is a misspelling of "STITCHING"
python/pyspark/heapq3.py:277:39: "MATHEMATISCH" is a misspelling of "MATHEMATICS"
python/pyspark/heapq3.py:713:8: "probabilty" is a misspelling of "probability"
python/pyspark/ml/clustering.py:1038:8: "Currenlty" is a misspelling of "Currently"
python/pyspark/ml/stat.py:339:23: "Euclidian" is a misspelling of "Euclidean"
python/pyspark/ml/regression.py:1378:20: "paramter" is a misspelling of "parameter"
python/pyspark/mllib/stat/_statistics.py:262:8: "probabilty" is a misspelling of "probability"
python/pyspark/rdd.py:1363:32: "paramter" is a misspelling of "parameter"
python/pyspark/streaming/tests.py:825:42: "retuns" is a misspelling of "returns"
python/pyspark/sql/tests.py:768:29: "initalization" is a misspelling of "initialization"
python/pyspark/sql/tests.py:3616:31: "initalize" is a misspelling of "initialize"
resource-managers/mesos/src/main/scala/org/apache/spark/scheduler/cluster/mesos/MesosSchedulerBackendUtil.scala:120:39: "arbitary" is a misspelling of "arbitrary"
resource-managers/mesos/src/test/scala/org/apache/spark/deploy/mesos/MesosClusterDispatcherArgumentsSuite.scala:26:45: "sucessfully" is a misspelling of "successfully"
resource-managers/mesos/src/main/scala/org/apache/spark/scheduler/cluster/mesos/MesosSchedulerUtils.scala:358:27: "constaints" is a misspelling of "constraints"
resource-managers/yarn/src/test/scala/org/apache/spark/deploy/yarn/YarnClusterSuite.scala:111:24: "senstive" is a misspelling of "sensitive"
sql/catalyst/src/main/scala/org/apache/spark/sql/catalyst/catalog/SessionCatalog.scala:1063:5: "overwirte" is a misspelling of "overwrite"
sql/catalyst/src/main/scala/org/apache/spark/sql/catalyst/expressions/datetimeExpressions.scala:1348:17: "compatability" is a misspelling of "compatibility"
sql/catalyst/src/main/scala/org/apache/spark/sql/catalyst/plans/logical/basicLogicalOperators.scala:77:36: "paramter" is a misspelling of "parameter"
sql/catalyst/src/main/scala/org/apache/spark/sql/internal/SQLConf.scala:1374:22: "precendence" is a misspelling of "precedence"
sql/catalyst/src/test/scala/org/apache/spark/sql/catalyst/analysis/AnalysisSuite.scala:238:27: "unnecassary" is a misspelling of "unnecessary"
sql/catalyst/src/test/scala/org/apache/spark/sql/catalyst/expressions/ConditionalExpressionSuite.scala:212:17: "whn" is a misspelling of "when"
sql/core/src/main/scala/org/apache/spark/sql/execution/streaming/StreamingSymmetricHashJoinHelper.scala:147:60: "timestmap" is a misspelling of "timestamp"
sql/core/src/test/scala/org/apache/spark/sql/TPCDSQuerySuite.scala:150:45: "precentage" is a misspelling of "percentage"
sql/core/src/test/scala/org/apache/spark/sql/execution/datasources/csv/CSVInferSchemaSuite.scala:135:29: "infered" is a misspelling of "inferred"
sql/hive/src/test/resources/golden/udf_instr-1-2e76f819563dbaba4beb51e3a130b922:1:52: "occurance" is a misspelling of "occurrence"
sql/hive/src/test/resources/golden/udf_instr-2-32da357fc754badd6e3898dcc8989182:1:52: "occurance" is a misspelling of "occurrence"
sql/hive/src/test/resources/golden/udf_locate-1-6e41693c9c6dceea4d7fab4c02884e4e:1:63: "occurance" is a misspelling of "occurrence"
sql/hive/src/test/resources/golden/udf_locate-2-d9b5934457931447874d6bb7c13de478:1:63: "occurance" is a misspelling of "occurrence"
sql/hive/src/test/resources/golden/udf_translate-2-f7aa38a33ca0df73b7a1e6b6da4b7fe8:9:79: "occurence" is a misspelling of "occurrence"
sql/hive/src/test/resources/golden/udf_translate-2-f7aa38a33ca0df73b7a1e6b6da4b7fe8:13:110: "occurence" is a misspelling of "occurrence"
sql/hive/src/test/resources/ql/src/test/queries/clientpositive/annotate_stats_join.q:46:105: "distint" is a misspelling of "distinct"
sql/hive/src/test/resources/ql/src/test/queries/clientpositive/auto_sortmerge_join_11.q:29:3: "Currenly" is a misspelling of "Currently"
sql/hive/src/test/resources/ql/src/test/queries/clientpositive/avro_partitioned.q:72:15: "existant" is a misspelling of "existent"
sql/hive/src/test/resources/ql/src/test/queries/clientpositive/decimal_udf.q:25:3: "substraction" is a misspelling of "subtraction"
sql/hive/src/test/resources/ql/src/test/queries/clientpositive/groupby2_map_multi_distinct.q:16:51: "funtion" is a misspelling of "function"
sql/hive/src/test/resources/ql/src/test/queries/clientpositive/groupby_sort_8.q:15:30: "issueing" is a misspelling of "issuing"
sql/hive/src/test/scala/org/apache/spark/sql/sources/HadoopFsRelationTest.scala:669:52: "wiht" is a misspelling of "with"
sql/hive-thriftserver/src/main/java/org/apache/hive/service/cli/session/HiveSessionImpl.java:474:9: "Refering" is a misspelling of "Referring"
```

### after

```
$ misspell . | grep -v '.js'
common/network-common/src/main/java/org/apache/spark/network/util/AbstractFileRegion.java:27:20: "transfered" is a misspelling of "transferred"
core/src/main/scala/org/apache/spark/status/storeTypes.scala:113:29: "ect" is a misspelling of "etc"
core/src/test/scala/org/apache/spark/scheduler/DAGSchedulerSuite.scala:1922:49: "agriculteur" is a misspelling of "agriculture"
data/streaming/AFINN-111.txt:1219:0: "humerous" is a misspelling of "humorous"
licenses/LICENSE-heapq.txt:5:63: "Stichting" is a misspelling of "Stitching"
licenses/LICENSE-heapq.txt:6:2: "Mathematisch" is a misspelling of "Mathematics"
licenses/LICENSE-heapq.txt:262:29: "Stichting" is a misspelling of "Stitching"
licenses/LICENSE-heapq.txt:262:39: "Mathematisch" is a misspelling of "Mathematics"
licenses/LICENSE-heapq.txt:269:49: "Stichting" is a misspelling of "Stitching"
licenses/LICENSE-heapq.txt:269:59: "Mathematisch" is a misspelling of "Mathematics"
licenses/LICENSE-heapq.txt:274:2: "STICHTING" is a misspelling of "STITCHING"
licenses/LICENSE-heapq.txt:274:12: "MATHEMATISCH" is a misspelling of "MATHEMATICS"
licenses/LICENSE-heapq.txt:276:29: "STICHTING" is a misspelling of "STITCHING"
licenses/LICENSE-heapq.txt:276:39: "MATHEMATISCH" is a misspelling of "MATHEMATICS"
licenses-binary/LICENSE-heapq.txt:5:63: "Stichting" is a misspelling of "Stitching"
licenses-binary/LICENSE-heapq.txt:6:2: "Mathematisch" is a misspelling of "Mathematics"
licenses-binary/LICENSE-heapq.txt:262:29: "Stichting" is a misspelling of "Stitching"
licenses-binary/LICENSE-heapq.txt:262:39: "Mathematisch" is a misspelling of "Mathematics"
licenses-binary/LICENSE-heapq.txt:269:49: "Stichting" is a misspelling of "Stitching"
licenses-binary/LICENSE-heapq.txt:269:59: "Mathematisch" is a misspelling of "Mathematics"
licenses-binary/LICENSE-heapq.txt:274:2: "STICHTING" is a misspelling of "STITCHING"
licenses-binary/LICENSE-heapq.txt:274:12: "MATHEMATISCH" is a misspelling of "MATHEMATICS"
licenses-binary/LICENSE-heapq.txt:276:29: "STICHTING" is a misspelling of "STITCHING"
licenses-binary/LICENSE-heapq.txt:276:39: "MATHEMATISCH" is a misspelling of "MATHEMATICS"
mllib/src/main/resources/org/apache/spark/ml/feature/stopwords/hungarian.txt:170:0: "teh" is a misspelling of "the"
mllib/src/main/resources/org/apache/spark/ml/feature/stopwords/portuguese.txt:53:0: "eles" is a misspelling of "eels"
mllib/src/main/scala/org/apache/spark/ml/stat/Summarizer.scala:99:20: "Euclidian" is a misspelling of "Euclidean"
mllib/src/main/scala/org/apache/spark/ml/stat/Summarizer.scala:539:11: "Euclidian" is a misspelling of "Euclidean"
mllib/src/main/scala/org/apache/spark/mllib/clustering/LDAOptimizer.scala:77:36: "Teh" is a misspelling of "The"
mllib/src/main/scala/org/apache/spark/mllib/stat/MultivariateOnlineSummarizer.scala:276:9: "Euclidian" is a misspelling of "Euclidean"
python/pyspark/heapq3.py:6:63: "Stichting" is a misspelling of "Stitching"
python/pyspark/heapq3.py:7:2: "Mathematisch" is a misspelling of "Mathematics"
python/pyspark/heapq3.py:263:29: "Stichting" is a misspelling of "Stitching"
python/pyspark/heapq3.py:263:39: "Mathematisch" is a misspelling of "Mathematics"
python/pyspark/heapq3.py:270:49: "Stichting" is a misspelling of "Stitching"
python/pyspark/heapq3.py:270:59: "Mathematisch" is a misspelling of "Mathematics"
python/pyspark/heapq3.py:275:2: "STICHTING" is a misspelling of "STITCHING"
python/pyspark/heapq3.py:275:12: "MATHEMATISCH" is a misspelling of "MATHEMATICS"
python/pyspark/heapq3.py:277:29: "STICHTING" is a misspelling of "STITCHING"
python/pyspark/heapq3.py:277:39: "MATHEMATISCH" is a misspelling of "MATHEMATICS"
python/pyspark/ml/stat.py:339:23: "Euclidian" is a misspelling of "Euclidean"
```

Closes #22070 from seratch/fix-typo.

Authored-by: Kazuhiro Sera <seratch@gmail.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2018-08-11 21:23:36 -05:00
Kazuaki Ishizaki 1dd0f17446 [SPARK-25036][SQL][FOLLOW-UP] Avoid match may not be exhaustive in Scala-2.12.
## What changes were proposed in this pull request?

This is a follow-up pr of #22014 and #22039

We still have some more compilation errors in mllib with scala-2.12 with sbt:

```
[error] [warn] /home/ishizaki/Spark/PR/scala212/spark/mllib/src/main/scala/org/apache/spark/ml/evaluation/ClusteringEvaluator.scala:116: match may not be exhaustive.
[error] It would fail on the following inputs: ("silhouette", _), (_, "cosine"), (_, "squaredEuclidean"), (_, String()), (_, _)
[error] [warn]     ($(metricName), $(distanceMeasure)) match {
[error] [warn]
```

## How was this patch tested?

Existing UTs

Closes #22058 from kiszk/SPARK-25036c.

Authored-by: Kazuaki Ishizaki <ishizaki@jp.ibm.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2018-08-10 07:34:09 -05:00
Kazuaki Ishizaki 132bcceebb [SPARK-25036][SQL] Avoid discarding unmoored doc comment in Scala-2.12.
## What changes were proposed in this pull request?

This PR avoid the following compilation error using sbt in Scala-2.12.

```
[error] [warn] /home/ishizaki/Spark/PR/scala212/spark/mllib/src/main/scala/org/apache/spark/ml/tree/impl/RandomForest.scala:410: discarding unmoored doc comment
[error] [warn]     /**
[error] [warn]
[error] [warn] /home/ishizaki/Spark/PR/scala212/spark/mllib/src/main/scala/org/apache/spark/ml/tree/impl/RandomForest.scala:441: discarding unmoored doc comment
[error] [warn]     /**
[error] [warn]
...
[error] [warn] /home/ishizaki/Spark/PR/scala212/spark/resource-managers/yarn/src/main/scala/org/apache/spark/deploy/yarn/Client.scala:440: discarding unmoored doc comment
[error] [warn]     /**
[error] [warn]
```

## How was this patch tested?

Existing UTs

Closes #22059 from kiszk/SPARK-25036d.

Authored-by: Kazuaki Ishizaki <ishizaki@jp.ibm.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2018-08-10 07:32:52 -05:00
Sean Owen 1a7e747ce4 [SPARK-25047][ML] Can't assign SerializedLambda to scala.Function1 in deserialization of BucketedRandomProjectionLSHModel
## What changes were proposed in this pull request?

Convert two function fields in ML classes to simple functions to avoi…d odd SerializedLambda deserialization problem

## How was this patch tested?

Existing tests.

Closes #22032 from srowen/SPARK-25047.

Authored-by: Sean Owen <srowen@gmail.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2018-08-09 08:07:46 -05:00
Kazuaki Ishizaki 56e9e97073 [MINOR][DOC] Fix typo
## What changes were proposed in this pull request?

This PR fixes typo regarding `auxiliary verb + verb[s]`. This is a follow-on of #21956.

## How was this patch tested?

N/A

Closes #22040 from kiszk/spellcheck1.

Authored-by: Kazuaki Ishizaki <ishizaki@jp.ibm.com>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-08-09 20:10:17 +08:00
Sean Owen 66699c5c30 [SPARK-25029][TESTS] Scala 2.12 issues: TaskNotSerializable and Janino "Two non-abstract methods ..." errors
## What changes were proposed in this pull request?

Fixes for test issues that arose after Scala 2.12 support was added -- ones that only affect the 2.12 build.

## How was this patch tested?

Existing tests.

Closes #22004 from srowen/SPARK-25029.

Authored-by: Sean Owen <srowen@gmail.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2018-08-07 17:30:37 -05:00
hyukjinkwon 55e3ae6930 [SPARK-25001][BUILD] Fix miscellaneous build warnings
## What changes were proposed in this pull request?

There are many warnings in the current build (for instance see https://amplab.cs.berkeley.edu/jenkins/job/spark-master-test-sbt-hadoop-2.7/4734/console).

**common**:

```
[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/kvstore/src/main/java/org/apache/spark/util/kvstore/LevelDB.java:237: warning: [rawtypes] found raw type: LevelDBIterator
[warn]   void closeIterator(LevelDBIterator it) throws IOException {
[warn]                      ^

[warn]   missing type arguments for generic class LevelDBIterator<T>
[warn]   where T is a type-variable:
[warn]     T extends Object declared in class LevelDBIterator
[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/network-common/src/main/java/org/apache/spark/network/server/TransportServer.java:151: warning: [deprecation] group() in AbstractBootstrap has been deprecated
[warn]     if (bootstrap != null && bootstrap.group() != null) {
[warn]                                       ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/network-common/src/main/java/org/apache/spark/network/server/TransportServer.java:152: warning: [deprecation] group() in AbstractBootstrap has been deprecated
[warn]       bootstrap.group().shutdownGracefully();
[warn]                ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/network-common/src/main/java/org/apache/spark/network/server/TransportServer.java:154: warning: [deprecation] childGroup() in ServerBootstrap has been deprecated
[warn]     if (bootstrap != null && bootstrap.childGroup() != null) {
[warn]                                       ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/network-common/src/main/java/org/apache/spark/network/server/TransportServer.java:155: warning: [deprecation] childGroup() in ServerBootstrap has been deprecated
[warn]       bootstrap.childGroup().shutdownGracefully();
[warn]                ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/network-common/src/main/java/org/apache/spark/network/util/NettyUtils.java:112: warning: [deprecation] PooledByteBufAllocator(boolean,int,int,int,int,int,int,int) in PooledByteBufAllocator has been deprecated
[warn]     return new PooledByteBufAllocator(
[warn]            ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/network-common/src/main/java/org/apache/spark/network/client/TransportClient.java:321: warning: [rawtypes] found raw type: Future
[warn]     public void operationComplete(Future future) throws Exception {
[warn]                                   ^

[warn]   missing type arguments for generic class Future<V>
[warn]   where V is a type-variable:
[warn]     V extends Object declared in interface Future
[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/network-common/src/main/java/org/apache/spark/network/client/TransportResponseHandler.java:215: warning: [rawtypes] found raw type: StreamInterceptor
[warn]           StreamInterceptor interceptor = new StreamInterceptor(this, resp.streamId, resp.byteCount,
[warn]           ^

[warn]   missing type arguments for generic class StreamInterceptor<T>
[warn]   where T is a type-variable:
[warn]     T extends Message declared in class StreamInterceptor
[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/network-common/src/main/java/org/apache/spark/network/client/TransportResponseHandler.java:215: warning: [rawtypes] found raw type: StreamInterceptor
[warn]           StreamInterceptor interceptor = new StreamInterceptor(this, resp.streamId, resp.byteCount,
[warn]                                               ^

[warn]   missing type arguments for generic class StreamInterceptor<T>
[warn]   where T is a type-variable:
[warn]     T extends Message declared in class StreamInterceptor
[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/network-common/src/main/java/org/apache/spark/network/client/TransportResponseHandler.java:215: warning: [unchecked] unchecked call to StreamInterceptor(MessageHandler<T>,String,long,StreamCallback) as a member of the raw type StreamInterceptor
[warn]           StreamInterceptor interceptor = new StreamInterceptor(this, resp.streamId, resp.byteCount,
[warn]                                           ^

[warn]   where T is a type-variable:
[warn]     T extends Message declared in class StreamInterceptor
[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/network-common/src/main/java/org/apache/spark/network/server/TransportRequestHandler.java:255: warning: [rawtypes] found raw type: StreamInterceptor
[warn]         StreamInterceptor interceptor = new StreamInterceptor(this, wrappedCallback.getID(),
[warn]         ^

[warn]   missing type arguments for generic class StreamInterceptor<T>
[warn]   where T is a type-variable:
[warn]     T extends Message declared in class StreamInterceptor
[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/network-common/src/main/java/org/apache/spark/network/server/TransportRequestHandler.java:255: warning: [rawtypes] found raw type: StreamInterceptor
[warn]         StreamInterceptor interceptor = new StreamInterceptor(this, wrappedCallback.getID(),
[warn]                                             ^

[warn]   missing type arguments for generic class StreamInterceptor<T>
[warn]   where T is a type-variable:
[warn]     T extends Message declared in class StreamInterceptor
[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/network-common/src/main/java/org/apache/spark/network/server/TransportRequestHandler.java:255: warning: [unchecked] unchecked call to StreamInterceptor(MessageHandler<T>,String,long,StreamCallback) as a member of the raw type StreamInterceptor
[warn]         StreamInterceptor interceptor = new StreamInterceptor(this, wrappedCallback.getID(),
[warn]                                         ^

[warn]   where T is a type-variable:
[warn]     T extends Message declared in class StreamInterceptor
[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/network-common/src/main/java/org/apache/spark/network/crypto/TransportCipher.java:270: warning: [deprecation] transfered() in FileRegion has been deprecated
[warn]         region.transferTo(byteRawChannel, region.transfered());
[warn]                                                 ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/network-common/src/main/java/org/apache/spark/network/sasl/SaslEncryption.java:304: warning: [deprecation] transfered() in FileRegion has been deprecated
[warn]         region.transferTo(byteChannel, region.transfered());
[warn]                                              ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/network-common/src/test/java/org/apache/spark/network/ProtocolSuite.java:119: warning: [deprecation] transfered() in FileRegion has been deprecated
[warn]       while (in.transfered() < in.count()) {
[warn]                ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/network-common/src/test/java/org/apache/spark/network/ProtocolSuite.java:120: warning: [deprecation] transfered() in FileRegion has been deprecated
[warn]         in.transferTo(channel, in.transfered());
[warn]                                  ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/unsafe/src/test/java/org/apache/spark/unsafe/hash/Murmur3_x86_32Suite.java:80: warning: [static] static method should be qualified by type name, Murmur3_x86_32, instead of by an expression
[warn]     Assert.assertEquals(-300363099, hasher.hashUnsafeWords(bytes, offset, 16, 42));
[warn]                                           ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/unsafe/src/test/java/org/apache/spark/unsafe/hash/Murmur3_x86_32Suite.java:84: warning: [static] static method should be qualified by type name, Murmur3_x86_32, instead of by an expression
[warn]     Assert.assertEquals(-1210324667, hasher.hashUnsafeWords(bytes, offset, 16, 42));
[warn]                                            ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/common/unsafe/src/test/java/org/apache/spark/unsafe/hash/Murmur3_x86_32Suite.java:88: warning: [static] static method should be qualified by type name, Murmur3_x86_32, instead of by an expression
[warn]     Assert.assertEquals(-634919701, hasher.hashUnsafeWords(bytes, offset, 16, 42));
[warn]                                           ^
```

**launcher**:

```
[warn] Pruning sources from previous analysis, due to incompatible CompileSetup.
[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/launcher/src/main/java/org/apache/spark/launcher/AbstractLauncher.java:31: warning: [rawtypes] found raw type: AbstractLauncher
[warn] public abstract class AbstractLauncher<T extends AbstractLauncher> {
[warn]                                                  ^
[warn]   missing type arguments for generic class AbstractLauncher<T>
[warn]   where T is a type-variable:
[warn]     T extends AbstractLauncher declared in class AbstractLauncher
```

**core**:

```
[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/core/src/main/scala/org/apache/spark/api/r/RBackend.scala:99: method group in class AbstractBootstrap is deprecated: see corresponding Javadoc for more information.
[warn]     if (bootstrap != null && bootstrap.group() != null) {
[warn]                                        ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/core/src/main/scala/org/apache/spark/api/r/RBackend.scala💯 method group in class AbstractBootstrap is deprecated: see corresponding Javadoc for more information.
[warn]       bootstrap.group().shutdownGracefully()
[warn]                 ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/core/src/main/scala/org/apache/spark/api/r/RBackend.scala:102: method childGroup in class ServerBootstrap is deprecated: see corresponding Javadoc for more information.
[warn]     if (bootstrap != null && bootstrap.childGroup() != null) {
[warn]                                        ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/core/src/main/scala/org/apache/spark/api/r/RBackend.scala:103: method childGroup in class ServerBootstrap is deprecated: see corresponding Javadoc for more information.
[warn]       bootstrap.childGroup().shutdownGracefully()
[warn]                 ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/core/src/test/scala/org/apache/spark/util/ClosureCleanerSuite.scala:151: reflective access of structural type member method getData should be enabled
[warn] by making the implicit value scala.language.reflectiveCalls visible.
[warn] This can be achieved by adding the import clause 'import scala.language.reflectiveCalls'
[warn] or by setting the compiler option -language:reflectiveCalls.
[warn] See the Scaladoc for value scala.language.reflectiveCalls for a discussion
[warn] why the feature should be explicitly enabled.
[warn]       val rdd = sc.parallelize(1 to 1).map(concreteObject.getData)
[warn]                                                           ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/core/src/test/scala/org/apache/spark/util/ClosureCleanerSuite.scala:175: reflective access of structural type member value innerObject2 should be enabled
[warn] by making the implicit value scala.language.reflectiveCalls visible.
[warn]       val rdd = sc.parallelize(1 to 1).map(concreteObject.innerObject2.getData)
[warn]                                                           ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/core/src/test/scala/org/apache/spark/util/ClosureCleanerSuite.scala:175: reflective access of structural type member method getData should be enabled
[warn] by making the implicit value scala.language.reflectiveCalls visible.
[warn]       val rdd = sc.parallelize(1 to 1).map(concreteObject.innerObject2.getData)
[warn]                                                                        ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/core/src/test/scala/org/apache/spark/LocalSparkContext.scala:32: constructor Slf4JLoggerFactory in class Slf4JLoggerFactory is deprecated: see corresponding Javadoc for more information.
[warn]     InternalLoggerFactory.setDefaultFactory(new Slf4JLoggerFactory())
[warn]                                             ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/core/src/test/scala/org/apache/spark/status/AppStatusListenerSuite.scala:218: value attemptId in class StageInfo is deprecated: Use attemptNumber instead
[warn]         assert(wrapper.stageAttemptId === stages.head.attemptId)
[warn]                                                       ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/core/src/test/scala/org/apache/spark/status/AppStatusListenerSuite.scala:261: value attemptId in class StageInfo is deprecated: Use attemptNumber instead
[warn]       stageAttemptId = stages.head.attemptId))
[warn]                                    ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/core/src/test/scala/org/apache/spark/status/AppStatusListenerSuite.scala:287: value attemptId in class StageInfo is deprecated: Use attemptNumber instead
[warn]       stageAttemptId = stages.head.attemptId))
[warn]                                    ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/core/src/test/scala/org/apache/spark/status/AppStatusListenerSuite.scala:471: value attemptId in class StageInfo is deprecated: Use attemptNumber instead
[warn]       stageAttemptId = stages.last.attemptId))
[warn]                                    ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/core/src/test/scala/org/apache/spark/status/AppStatusListenerSuite.scala:966: value attemptId in class StageInfo is deprecated: Use attemptNumber instead
[warn]     listener.onTaskStart(SparkListenerTaskStart(dropped.stageId, dropped.attemptId, task))
[warn]                                                                          ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/core/src/test/scala/org/apache/spark/status/AppStatusListenerSuite.scala:972: value attemptId in class StageInfo is deprecated: Use attemptNumber instead
[warn]     listener.onTaskEnd(SparkListenerTaskEnd(dropped.stageId, dropped.attemptId,
[warn]                                                                      ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/core/src/test/scala/org/apache/spark/status/AppStatusListenerSuite.scala:976: value attemptId in class StageInfo is deprecated: Use attemptNumber instead
[warn]       .taskSummary(dropped.stageId, dropped.attemptId, Array(0.25d, 0.50d, 0.75d))
[warn]                                             ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/core/src/test/scala/org/apache/spark/status/AppStatusListenerSuite.scala:1146: value attemptId in class StageInfo is deprecated: Use attemptNumber instead
[warn]       SparkListenerTaskEnd(stage1.stageId, stage1.attemptId, "taskType", Success, tasks(1), null))
[warn]                                                   ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/core/src/test/scala/org/apache/spark/status/AppStatusListenerSuite.scala:1150: value attemptId in class StageInfo is deprecated: Use attemptNumber instead
[warn]       SparkListenerTaskEnd(stage1.stageId, stage1.attemptId, "taskType", Success, tasks(0), null))
[warn]                                                   ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/core/src/test/scala/org/apache/spark/storage/DiskStoreSuite.scala:197: method transfered in trait FileRegion is deprecated: see corresponding Javadoc for more information.
[warn]     while (region.transfered() < region.count()) {
[warn]                   ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/core/src/test/scala/org/apache/spark/storage/DiskStoreSuite.scala:198: method transfered in trait FileRegion is deprecated: see corresponding Javadoc for more information.
[warn]       region.transferTo(byteChannel, region.transfered())
[warn]                                             ^
```

**sql**:

```
[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/catalyst/src/test/scala/org/apache/spark/sql/catalyst/analysis/AnalysisSuite.scala:534: abstract type T is unchecked since it is eliminated by erasure
[warn]       assert(partitioning.isInstanceOf[T])
[warn]                                       ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/catalyst/src/test/scala/org/apache/spark/sql/catalyst/analysis/AnalysisSuite.scala:534: abstract type T is unchecked since it is eliminated by erasure
[warn]       assert(partitioning.isInstanceOf[T])
[warn]             ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/catalyst/src/test/scala/org/apache/spark/sql/catalyst/expressions/ObjectExpressionsSuite.scala:323: inferred existential type Option[Class[_$1]]( forSome { type _$1 }), which cannot be expressed by wildcards,  should be enabled
[warn] by making the implicit value scala.language.existentials visible.
[warn] This can be achieved by adding the import clause 'import scala.language.existentials'
[warn] or by setting the compiler option -language:existentials.
[warn] See the Scaladoc for value scala.language.existentials for a discussion
[warn] why the feature should be explicitly enabled.
[warn]       val optClass = Option(collectionCls)
[warn]                            ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/main/java/org/apache/spark/sql/execution/datasources/parquet/SpecificParquetRecordReaderBase.java:226: warning: [deprecation] ParquetFileReader(Configuration,FileMetaData,Path,List<BlockMetaData>,List<ColumnDescriptor>) in ParquetFileReader has been deprecated
[warn]     this.reader = new ParquetFileReader(
[warn]                   ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/main/java/org/apache/spark/sql/execution/datasources/parquet/VectorizedColumnReader.java:178: warning: [deprecation] getType() in ColumnDescriptor has been deprecated
[warn]             (descriptor.getType() == PrimitiveType.PrimitiveTypeName.INT32 ||
[warn]                        ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/main/java/org/apache/spark/sql/execution/datasources/parquet/VectorizedColumnReader.java:179: warning: [deprecation] getType() in ColumnDescriptor has been deprecated
[warn]             (descriptor.getType() == PrimitiveType.PrimitiveTypeName.INT64  &&
[warn]                        ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/main/java/org/apache/spark/sql/execution/datasources/parquet/VectorizedColumnReader.java:181: warning: [deprecation] getType() in ColumnDescriptor has been deprecated
[warn]             descriptor.getType() == PrimitiveType.PrimitiveTypeName.FLOAT ||
[warn]                       ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/main/java/org/apache/spark/sql/execution/datasources/parquet/VectorizedColumnReader.java:182: warning: [deprecation] getType() in ColumnDescriptor has been deprecated
[warn]             descriptor.getType() == PrimitiveType.PrimitiveTypeName.DOUBLE ||
[warn]                       ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/main/java/org/apache/spark/sql/execution/datasources/parquet/VectorizedColumnReader.java:183: warning: [deprecation] getType() in ColumnDescriptor has been deprecated
[warn]             descriptor.getType() == PrimitiveType.PrimitiveTypeName.BINARY))) {
[warn]                       ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/main/java/org/apache/spark/sql/execution/datasources/parquet/VectorizedColumnReader.java:198: warning: [deprecation] getType() in ColumnDescriptor has been deprecated
[warn]         switch (descriptor.getType()) {
[warn]                           ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/main/java/org/apache/spark/sql/execution/datasources/parquet/VectorizedColumnReader.java:221: warning: [deprecation] getTypeLength() in ColumnDescriptor has been deprecated
[warn]             readFixedLenByteArrayBatch(rowId, num, column, descriptor.getTypeLength());
[warn]                                                                      ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/main/java/org/apache/spark/sql/execution/datasources/parquet/VectorizedColumnReader.java:224: warning: [deprecation] getType() in ColumnDescriptor has been deprecated
[warn]             throw new IOException("Unsupported type: " + descriptor.getType());
[warn]                                                                    ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/main/java/org/apache/spark/sql/execution/datasources/parquet/VectorizedColumnReader.java:246: warning: [deprecation] getType() in ColumnDescriptor has been deprecated
[warn]       descriptor.getType().toString(),
[warn]                 ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/main/java/org/apache/spark/sql/execution/datasources/parquet/VectorizedColumnReader.java:258: warning: [deprecation] getType() in ColumnDescriptor has been deprecated
[warn]     switch (descriptor.getType()) {
[warn]                       ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/main/java/org/apache/spark/sql/execution/datasources/parquet/VectorizedColumnReader.java:384: warning: [deprecation] getType() in ColumnDescriptor has been deprecated
[warn]         throw new UnsupportedOperationException("Unsupported type: " + descriptor.getType());
[warn]                                                                                  ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/main/java/org/apache/spark/sql/vectorized/ArrowColumnVector.java:458: warning: [static] static variable should be qualified by type name, BaseRepeatedValueVector, instead of by an expression
[warn]       int index = rowId * accessor.OFFSET_WIDTH;
[warn]                                   ^
[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/main/java/org/apache/spark/sql/vectorized/ArrowColumnVector.java:460: warning: [static] static variable should be qualified by type name, BaseRepeatedValueVector, instead of by an expression
[warn]       int end = offsets.getInt(index + accessor.OFFSET_WIDTH);
[warn]                                                ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/test/scala/org/apache/spark/sql/BenchmarkQueryTest.scala:57: a pure expression does nothing in statement position; you may be omitting necessary parentheses
[warn]       case s => s
[warn]                 ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/test/scala/org/apache/spark/sql/execution/datasources/parquet/ParquetInteroperabilitySuite.scala:182: inferred existential type org.apache.parquet.column.statistics.Statistics[?0]( forSome { type ?0 <: Comparable[?0] }), which cannot be expressed by wildcards,  should be enabled
[warn] by making the implicit value scala.language.existentials visible.
[warn] This can be achieved by adding the import clause 'import scala.language.existentials'
[warn] or by setting the compiler option -language:existentials.
[warn] See the Scaladoc for value scala.language.existentials for a discussion
[warn] why the feature should be explicitly enabled.
[warn]                 val columnStats = oneBlockColumnMeta.getStatistics
[warn]                                                      ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/test/scala/org/apache/spark/sql/execution/streaming/sources/ForeachBatchSinkSuite.scala:146: implicit conversion method conv should be enabled
[warn] by making the implicit value scala.language.implicitConversions visible.
[warn] This can be achieved by adding the import clause 'import scala.language.implicitConversions'
[warn] or by setting the compiler option -language:implicitConversions.
[warn] See the Scaladoc for value scala.language.implicitConversions for a discussion
[warn] why the feature should be explicitly enabled.
[warn]     implicit def conv(x: (Int, Long)): KV = KV(x._1, x._2)
[warn]                  ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/test/scala/org/apache/spark/sql/streaming/continuous/shuffle/ContinuousShuffleSuite.scala:48: implicit conversion method unsafeRow should be enabled
[warn] by making the implicit value scala.language.implicitConversions visible.
[warn]   private implicit def unsafeRow(value: Int) = {
[warn]                        ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/test/scala/org/apache/spark/sql/execution/datasources/parquet/ParquetInteroperabilitySuite.scala:178: method getType in class ColumnDescriptor is deprecated: see corresponding Javadoc for more information.
[warn]                 assert(oneFooter.getFileMetaData.getSchema.getColumns.get(0).getType() ===
[warn]                                                                              ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/core/src/test/scala/org/apache/spark/sql/execution/datasources/parquet/ParquetTest.scala:154: method readAllFootersInParallel in object ParquetFileReader is deprecated: see corresponding Javadoc for more information.
[warn]     ParquetFileReader.readAllFootersInParallel(configuration, fs.getFileStatus(path)).asScala.toSeq
[warn]                       ^

[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/sql/hive/src/test/java/org/apache/spark/sql/hive/test/Complex.java:679: warning: [cast] redundant cast to Complex
[warn]     Complex typedOther = (Complex)other;
[warn]                          ^
```

**mllib**:

```
[warn] Pruning sources from previous analysis, due to incompatible CompileSetup.
[warn] /home/jenkins/workspace/spark-master-test-maven-hadoop-2.7/mllib/src/test/scala/org/apache/spark/ml/recommendation/ALSSuite.scala:597: match may not be exhaustive.
[warn] It would fail on the following inputs: None, Some((x: Tuple2[?, ?] forSome x not in (?, ?)))
[warn]     val df = dfs.find {
[warn]                       ^
```

This PR does not target fix all of them since some look pretty tricky to fix and there look too many warnings including false positive (like deprecated API but it's used in its test, etc.)

## How was this patch tested?

Existing tests should cover this.

Author: hyukjinkwon <gurwls223@apache.org>

Closes #21975 from HyukjinKwon/remove-build-warnings.
2018-08-04 11:52:49 -05:00
Stavros Kontopoulos a65736996b [SPARK-14540][CORE] Fix remaining major issues for Scala 2.12 Support
## What changes were proposed in this pull request?
This PR addresses issues 2,3 in this [document](https://docs.google.com/document/d/1fbkjEL878witxVQpOCbjlvOvadHtVjYXeB-2mgzDTvk).

* We modified the closure cleaner to identify closures that are implemented via the LambdaMetaFactory mechanism (serializedLambdas) (issue2).

* We also fix the issue due to scala/bug#11016. There are two options for solving the Unit issue, either add () at the end of the closure or use the trick described in the doc. Otherwise overloading resolution does not work (we are not going to eliminate either of the methods) here. Compiler tries to adapt to Unit and makes these two methods candidates for overloading, when there is polymorphic overloading there is no ambiguity (that is the workaround implemented). This does not look that good but it serves its purpose as we need to support two different uses for method: `addTaskCompletionListener`. One that passes a TaskCompletionListener and one that passes a closure that is wrapped with a TaskCompletionListener later on (issue3).

Note: regarding issue 1 in the doc the plan is:

> Do Nothing. Don’t try to fix this as this is only a problem for Java users who would want to use 2.11 binaries. In that case they can cast to MapFunction to be able to utilize lambdas. In Spark 3.0.0 the API should be simplified so that this issue is removed.

## How was this patch tested?
This was manually tested:
```./dev/change-scala-version.sh 2.12
./build/mvn -DskipTests -Pscala-2.12 clean package
./build/mvn -Pscala-2.12 clean package -DwildcardSuites=org.apache.spark.serializer.ProactiveClosureSerializationSuite -Dtest=None
./build/mvn -Pscala-2.12 clean package -DwildcardSuites=org.apache.spark.util.ClosureCleanerSuite -Dtest=None
./build/mvn -Pscala-2.12 clean package -DwildcardSuites=org.apache.spark.streaming.DStreamClosureSuite -Dtest=None```

Author: Stavros Kontopoulos <stavros.kontopoulos@lightbend.com>

Closes #21930 from skonto/scala2.12-sup.
2018-08-02 09:17:09 -05:00
zhengruifeng 57d994994d [SPARK-24557][ML] ClusteringEvaluator support array input
## What changes were proposed in this pull request?
ClusteringEvaluator support array input

## How was this patch tested?
added tests

Author: zhengruifeng <ruifengz@foxmail.com>

Closes #21563 from zhengruifeng/clu_eval_support_array.
2018-08-01 23:46:01 -07:00
Gengliang Wang fa09d91925 [SPARK-24919][BUILD] New linter rule for sparkContext.hadoopConfiguration
## What changes were proposed in this pull request?

In most cases, we should use `spark.sessionState.newHadoopConf()` instead of `sparkContext.hadoopConfiguration`, so that the hadoop configurations specified in Spark session
configuration will come into effect.

Add a rule matching `spark.sparkContext.hadoopConfiguration` or `spark.sqlContext.sparkContext.hadoopConfiguration` to prevent the usage.
## How was this patch tested?

Unit test

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21873 from gengliangwang/linterRule.
2018-07-26 16:50:59 -07:00
Bago Amirbekian 3cb1b57809 [SPARK-24852][ML] Update spark.ml to use Instrumentation.instrumented.
## What changes were proposed in this pull request?

Followup for #21719.
Update spark.ml training code to fully wrap instrumented methods and remove old instrumentation APIs.

## How was this patch tested?

existing tests.

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: Bago Amirbekian <bago@databricks.com>

Closes #21799 from MrBago/new-instrumentation-apis2.
2018-07-20 12:13:15 -07:00
Marco Gaido cc4d64bb16 [SPARK-23451][ML] Deprecate KMeans.computeCost
## What changes were proposed in this pull request?

Deprecate `KMeans.computeCost` which was introduced as a temp fix and now it is not needed anymore, since we introduced `ClusteringEvaluator`.

## How was this patch tested?

manual test (deprecation warning displayed)
Scala
```
...
scala> model.computeCost(dataset)
warning: there was one deprecation warning; re-run with -deprecation for details
res1: Double = 0.0
```

Python
```
>>> import warnings
>>> warnings.simplefilter('always', DeprecationWarning)
...
>>> model.computeCost(df)
/Users/mgaido/apache/spark/python/pyspark/ml/clustering.py:330: DeprecationWarning: Deprecated in 2.4.0. It will be removed in 3.0.0. Use ClusteringEvaluator instead.
  " instead.", DeprecationWarning)
```

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #20629 from mgaido91/SPARK-23451.
2018-07-20 09:18:57 -07:00
Marco Gaido a5925c1631 [SPARK-24268][SQL] Use datatype.catalogString in error messages
## What changes were proposed in this pull request?

As stated in https://github.com/apache/spark/pull/21321, in the error messages we should use `catalogString`. This is not the case, as SPARK-22893 used `simpleString` in order to have the same representation everywhere and it missed some places.

The PR unifies the messages using alway the `catalogString` representation of the dataTypes in the messages.

## How was this patch tested?

existing/modified UTs

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21804 from mgaido91/SPARK-24268_catalog.
2018-07-19 23:29:29 -07:00
Bago Amirbekian 912634b004 [SPARK-24747][ML] Make Instrumentation class more flexible
## What changes were proposed in this pull request?

This PR updates the Instrumentation class to make it more flexible and a little bit easier to use. When these APIs are merged, I'll followup with a PR to update the training code to use these new APIs so we can remove the old APIs. These changes are all to private APIs so this PR doesn't make any user facing changes.

## How was this patch tested?

Existing tests.

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: Bago Amirbekian <bago@databricks.com>

Closes #21719 from MrBago/new-instrumentation-apis.
2018-07-17 13:11:52 -07:00
Shahid cf97045349 [SPARK-18230][MLLIB] Throw a better exception, if the user or product doesn't exist
When invoking MatrixFactorizationModel.recommendProducts(Int, Int) with a non-existing user, a java.util.NoSuchElementException is thrown:

> java.util.NoSuchElementException: next on empty iterator
	at scala.collection.Iterator$$anon$2.next(Iterator.scala:39)
	at scala.collection.Iterator$$anon$2.next(Iterator.scala:37)
	at scala.collection.IndexedSeqLike$Elements.next(IndexedSeqLike.scala:63)
	at scala.collection.IterableLike$class.head(IterableLike.scala:107)
	at scala.collection.mutable.WrappedArray.scala$collection$IndexedSeqOptimized$$super$head(WrappedArray.scala:35)
	at scala.collection.IndexedSeqOptimized$class.head(IndexedSeqOptimized.scala:126)
	at scala.collection.mutable.WrappedArray.head(WrappedArray.scala:35)
	at org.apache.spark.mllib.recommendation.MatrixFactorizationModel.recommendProducts(MatrixFactorizationModel.scala:169)

## What changes were proposed in this pull request?
Throw a better exception, like "user-id/product-id doesn't found in the model", for a non-existent user/product

## How was this patch tested?
Added UT

Author: Shahid <shahidki31@gmail.com>

Closes #21740 from shahidki31/checkInvalidUserProduct.
2018-07-16 09:50:43 -05:00
郑瑞峰 bcf7121ed2 [TRIVIAL][ML] GMM unpersist RDD after training
## What changes were proposed in this pull request?
unpersist `instances` after training

## How was this patch tested?
existing tests

Author: 郑瑞峰 <zhengruifeng@ZBMAC-C02VX5XWH.local>

Closes #21562 from zhengruifeng/gmm_unpersist.
2018-07-15 20:14:17 -07:00
Sean Owen 8aceb961c3 [SPARK-24754][ML] Minhash integer overflow
## What changes were proposed in this pull request?

Use longs in calculating min hash to avoid bias due to int overflow.

## How was this patch tested?

Existing tests.

Author: Sean Owen <srowen@gmail.com>

Closes #21750 from srowen/SPARK-24754.
2018-07-14 15:59:17 -05:00
Marco Gaido 3b6005b8a2 [SPARK-23528][ML] Add numIter to ClusteringSummary
## What changes were proposed in this pull request?

Added the number of iterations in `ClusteringSummary`. This is an helpful information in evaluating how to eventually modify the parameters in order to get a better model.

## How was this patch tested?

modified existing UTs

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #20701 from mgaido91/SPARK-23528.
2018-07-13 11:23:42 -07:00
Kazuaki Ishizaki 5ad4735bda [SPARK-24529][BUILD][TEST-MAVEN] Add spotbugs into maven build process
## What changes were proposed in this pull request?

This PR enables a Java bytecode check tool [spotbugs](https://spotbugs.github.io/) to avoid possible integer overflow at multiplication. When an violation is detected, the build process is stopped.
Due to the tool limitation, some other checks will be enabled. In this PR, [these patterns](http://spotbugs-in-kengo-toda.readthedocs.io/en/lqc-list-detectors/detectors.html#findpuzzlers) in `FindPuzzlers` can be detected.

This check is enabled at `compile` phase. Thus, `mvn compile` or `mvn package` launches this check.

## How was this patch tested?

Existing UTs

Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com>

Closes #21542 from kiszk/SPARK-24529.
2018-07-12 09:52:23 +08:00
Xiao Li aec966b05e Revert "[SPARK-24268][SQL] Use datatype.simpleString in error messages"
This reverts commit 1bd3d61f41.
2018-07-09 14:24:23 -07:00
Marco Gaido 1bd3d61f41 [SPARK-24268][SQL] Use datatype.simpleString in error messages
## What changes were proposed in this pull request?

SPARK-22893 tried to unify error messages about dataTypes. Unfortunately, still many places were missing the `simpleString` method in other to have the same representation everywhere.

The PR unified the messages using alway the simpleString representation of the dataTypes in the messages.

## How was this patch tested?

existing/modified UTs

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21321 from mgaido91/SPARK-24268.
2018-07-09 22:59:05 +08:00
Shahid ca8243f30f [MINOR][ML] Minor correction in the powerIterationSuite
## What changes were proposed in this pull request?

Currently the power iteration clustering test in  spark ml, maps the results to the labels 0 and 1 for assertion. Since the clustering outputs need not be the same as the mapped labels, it may cause failure in the test case. Even if it correctly maps, theoretically we cannot guarantee which set belongs to which cluster label. KMeans can assign label 0 to either of the set.

PowerIterationClusteringSuite in the MLLib checks the clustering results without mapping to the particular cluster label, as shown below.
``  val predictions = Array.fill(2)(mutable.Set.empty[Long])
    model.assignments.collect().foreach { a =>
      predictions(a.cluster) += a.id
    }
    assert(predictions.toSet == Set((0 until n1).toSet, (n1 until n).toSet))
``

## How was this patch tested?
Existing tests

Author: Shahid <shahidki31@gmail.com>

Closes #21689 from shahidki31/picTestSuiteMinorCorrection.
2018-07-04 09:56:24 -05:00
bravo-zhang 524827f062 [SPARK-14712][ML] LogisticRegressionModel.toString should summarize model
## What changes were proposed in this pull request?

[SPARK-14712](https://issues.apache.org/jira/browse/SPARK-14712)
spark.mllib LogisticRegressionModel overrides toString to print a little model info. We should do the same in spark.ml and override repr in pyspark.

## How was this patch tested?

LogisticRegressionSuite.scala
Python doctest in pyspark.ml.classification.py

Author: bravo-zhang <mzhang1230@gmail.com>

Closes #18826 from bravo-zhang/spark-14712.
2018-06-28 12:40:39 -07:00
Fangshi Li cc88d7fad1 [SPARK-24216][SQL] Spark TypedAggregateExpression uses getSimpleName that is not safe in scala
## What changes were proposed in this pull request?

When user create a aggregator object in scala and pass the aggregator to Spark Dataset's agg() method, Spark's will initialize TypedAggregateExpression with the nodeName field as aggregator.getClass.getSimpleName. However, getSimpleName is not safe in scala environment, depending on how user creates the aggregator object. For example, if the aggregator class full qualified name is "com.my.company.MyUtils$myAgg$2$", the getSimpleName will throw java.lang.InternalError "Malformed class name". This has been reported in scalatest https://github.com/scalatest/scalatest/pull/1044 and discussed in many scala upstream jiras such as SI-8110, SI-5425.

To fix this issue, we follow the solution in https://github.com/scalatest/scalatest/pull/1044 to add safer version of getSimpleName as a util method, and TypedAggregateExpression will invoke this util method rather than getClass.getSimpleName.

## How was this patch tested?
added unit test

Author: Fangshi Li <fli@linkedin.com>

Closes #21276 from fangshil/SPARK-24216.
2018-06-12 12:10:08 -07:00
Lee Dongjin 5d6a53d983 [SPARK-15064][ML] Locale support in StopWordsRemover
## What changes were proposed in this pull request?

Add locale support for `StopWordsRemover`.

## How was this patch tested?

[Scala|Python] unit tests.

Author: Lee Dongjin <dongjin@apache.org>

Closes #21501 from dongjinleekr/feature/SPARK-15064.
2018-06-12 08:16:37 -07:00
WeichenXu e8c1a0c2fd [SPARK-15784] Add Power Iteration Clustering to spark.ml
## What changes were proposed in this pull request?

According to the discussion on JIRA. I rewrite the Power Iteration Clustering API in `spark.ml`.

## How was this patch tested?

Unit test.

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: WeichenXu <weichen.xu@databricks.com>

Closes #21493 from WeichenXu123/pic_api.
2018-06-04 21:24:35 -07:00
Lu WANG ff0501b0c2 [SPARK-24300][ML] change the way to set seed in ml.cluster.LDASuite.generateLDAData
## What changes were proposed in this pull request?

Using different RNG in all different partitions.

## How was this patch tested?

manually

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: Lu WANG <lu.wang@databricks.com>

Closes #21492 from ludatabricks/SPARK-24300.
2018-06-04 16:08:27 -07:00