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3186 commits

Author SHA1 Message Date
Reynold Xin 70ad07a9d2 [SPARK-18522][SQL] Explicit contract for column stats serialization
## What changes were proposed in this pull request?
The current implementation of column stats uses the base64 encoding of the internal UnsafeRow format to persist statistics (in table properties in Hive metastore). This is an internal format that is not stable across different versions of Spark and should NOT be used for persistence. In addition, it would be better if statistics stored in the catalog is human readable.

This pull request introduces the following changes:

1. Created a single ColumnStat class to for all data types. All data types track the same set of statistics.
2. Updated the implementation for stats collection to get rid of the dependency on internal data structures (e.g. InternalRow, or storing DateType as an int32). For example, previously dates were stored as a single integer, but are now stored as java.sql.Date. When we implement the next steps of CBO, we can add code to convert those back into internal types again.
3. Documented clearly what JVM data types are being used to store what data.
4. Defined a simple Map[String, String] interface for serializing and deserializing column stats into/from the catalog.
5. Rearranged the method/function structure so it is more clear what the supported data types are, and also moved how stats are generated into ColumnStat class so they are easy to find.

## How was this patch tested?
Removed most of the original test cases created for column statistics, and added three very simple ones to cover all the cases. The three test cases validate:
1. Roundtrip serialization works.
2. Behavior when analyzing non-existent column or unsupported data type column.
3. Result for stats collection for all valid data types.

Also moved parser related tests into a parser test suite and added an explicit serialization test for the Hive external catalog.

Author: Reynold Xin <rxin@databricks.com>

Closes #15959 from rxin/SPARK-18522.
2016-11-23 20:48:41 +08:00
Wenchen Fan 84284e8c82 [SPARK-18053][SQL] compare unsafe and safe complex-type values correctly
## What changes were proposed in this pull request?

In Spark SQL, some expression may output safe format values, e.g. `CreateArray`, `CreateStruct`, `Cast`, etc. When we compare 2 values, we should be able to compare safe and unsafe formats.

The `GreaterThan`, `LessThan`, etc. in Spark SQL already handles it, but the `EqualTo` doesn't. This PR fixes it.

## How was this patch tested?

new unit test and regression test

Author: Wenchen Fan <wenchen@databricks.com>

Closes #15929 from cloud-fan/type-aware.
2016-11-23 04:15:19 -08:00
Sean Owen 7e0cd1d9b1
[SPARK-18073][DOCS][WIP] Migrate wiki to spark.apache.org web site
## What changes were proposed in this pull request?

Updates links to the wiki to links to the new location of content on spark.apache.org.

## How was this patch tested?

Doc builds

Author: Sean Owen <sowen@cloudera.com>

Closes #15967 from srowen/SPARK-18073.1.
2016-11-23 11:25:47 +00:00
Dilip Biswal 39a1d30636 [SPARK-18533] Raise correct error upon specification of schema for datasource tables created using CTAS
## What changes were proposed in this pull request?
Fixes the inconsistency of error raised between data source and hive serde
tables when schema is specified in CTAS scenario. In the process the grammar for
create table (datasource) is simplified.

**before:**
``` SQL
spark-sql> create table t2 (c1 int, c2 int) using parquet as select * from t1;
Error in query:
mismatched input 'as' expecting {<EOF>, '.', 'OPTIONS', 'CLUSTERED', 'PARTITIONED'}(line 1, pos 64)

== SQL ==
create table t2 (c1 int, c2 int) using parquet as select * from t1
----------------------------------------------------------------^^^
```

**After:**
```SQL
spark-sql> create table t2 (c1 int, c2 int) using parquet as select * from t1
         > ;
Error in query:
Operation not allowed: Schema may not be specified in a Create Table As Select (CTAS) statement(line 1, pos 0)

== SQL ==
create table t2 (c1 int, c2 int) using parquet as select * from t1
^^^
```
## How was this patch tested?
Added a new test in CreateTableAsSelectSuite

Author: Dilip Biswal <dbiswal@us.ibm.com>

Closes #15968 from dilipbiswal/ctas.
2016-11-22 15:57:07 -08:00
gatorsmile 9c42d4a76c [SPARK-16803][SQL] SaveAsTable does not work when target table is a Hive serde table
### What changes were proposed in this pull request?

In Spark 2.0, `SaveAsTable` does not work when the target table is a Hive serde table, but Spark 1.6 works.

**Spark 1.6**

``` Scala
scala> sql("create table sample.sample stored as SEQUENCEFILE as select 1 as key, 'abc' as value")
res2: org.apache.spark.sql.DataFrame = []

scala> val df = sql("select key, value as value from sample.sample")
df: org.apache.spark.sql.DataFrame = [key: int, value: string]

scala> df.write.mode("append").saveAsTable("sample.sample")

scala> sql("select * from sample.sample").show()
+---+-----+
|key|value|
+---+-----+
|  1|  abc|
|  1|  abc|
+---+-----+
```

**Spark 2.0**

``` Scala
scala> df.write.mode("append").saveAsTable("sample.sample")
org.apache.spark.sql.AnalysisException: Saving data in MetastoreRelation sample, sample
 is not supported.;
```

So far, we do not plan to support it in Spark 2.1 due to the risk. Spark 1.6 works because it internally uses insertInto. But, if we change it back it will break the semantic of saveAsTable (this method uses by-name resolution instead of using by-position resolution used by insertInto). More extra changes are needed to support `hive` as a `format` in DataFrameWriter.

Instead, users should use insertInto API. This PR corrects the error messages. Users can understand how to bypass it before we support it in a separate PR.
### How was this patch tested?

Test cases are added

Author: gatorsmile <gatorsmile@gmail.com>

Closes #15926 from gatorsmile/saveAsTableFix5.
2016-11-22 15:10:49 -08:00
Burak Yavuz bdc8153e86 [SPARK-18465] Add 'IF EXISTS' clause to 'UNCACHE' to not throw exceptions when table doesn't exist
## What changes were proposed in this pull request?

While this behavior is debatable, consider the following use case:
```sql
UNCACHE TABLE foo;
CACHE TABLE foo AS
SELECT * FROM bar
```
The command above fails the first time you run it. But I want to run the command above over and over again, and I don't want to change my code just for the first run of it.
The issue is that subsequent `CACHE TABLE` commands do not overwrite the existing table.

Now we can do:
```sql
UNCACHE TABLE IF EXISTS foo;
CACHE TABLE foo AS
SELECT * FROM bar
```

## How was this patch tested?

Unit tests

Author: Burak Yavuz <brkyvz@gmail.com>

Closes #15896 from brkyvz/uncache.
2016-11-22 13:03:50 -08:00
Nattavut Sutyanyong 45ea46b7b3 [SPARK-18504][SQL] Scalar subquery with extra group by columns returning incorrect result
## What changes were proposed in this pull request?

This PR blocks an incorrect result scenario in scalar subquery where there are GROUP BY column(s)
that are not part of the correlated predicate(s).

Example:
// Incorrect result
Seq(1).toDF("c1").createOrReplaceTempView("t1")
Seq((1,1),(1,2)).toDF("c1","c2").createOrReplaceTempView("t2")
sql("select (select sum(-1) from t2 where t1.c1=t2.c1 group by t2.c2) from t1").show

// How can selecting a scalar subquery from a 1-row table return 2 rows?

## How was this patch tested?
sql/test, catalyst/test
new test case covering the reported problem is added to SubquerySuite.scala

Author: Nattavut Sutyanyong <nsy.can@gmail.com>

Closes #15936 from nsyca/scalarSubqueryIncorrect-1.
2016-11-22 12:06:21 -08:00
Liwei Lin ebeb0830a3 [SPARK-18425][STRUCTURED STREAMING][TESTS] Test CompactibleFileStreamLog directly
## What changes were proposed in this pull request?

Right now we are testing the most of `CompactibleFileStreamLog` in `FileStreamSinkLogSuite` (because `FileStreamSinkLog` once was the only subclass of `CompactibleFileStreamLog`, but now it's not the case any more).

Let's refactor the tests so that `CompactibleFileStreamLog` is directly tested, making future changes (like https://github.com/apache/spark/pull/15828, https://github.com/apache/spark/pull/15827) to `CompactibleFileStreamLog` much easier to test and much easier to review.

## How was this patch tested?

the PR itself is about tests

Author: Liwei Lin <lwlin7@gmail.com>

Closes #15870 from lw-lin/test-compact-1113.
2016-11-21 21:14:13 -08:00
Burak Yavuz 97a8239a62 [SPARK-18493] Add missing python APIs: withWatermark and checkpoint to dataframe
## What changes were proposed in this pull request?

This PR adds two of the newly added methods of `Dataset`s to Python:
`withWatermark` and `checkpoint`

## How was this patch tested?

Doc tests

Author: Burak Yavuz <brkyvz@gmail.com>

Closes #15921 from brkyvz/py-watermark.
2016-11-21 17:24:02 -08:00
Dongjoon Hyun ddd02f50bb [SPARK-18517][SQL] DROP TABLE IF EXISTS should not warn for non-existing tables
## What changes were proposed in this pull request?

Currently, `DROP TABLE IF EXISTS` shows warning for non-existing tables. However, it had better be quiet for this case by definition of the command.

**BEFORE**
```scala
scala> sql("DROP TABLE IF EXISTS nonexist")
16/11/20 20:48:26 WARN DropTableCommand: org.apache.spark.sql.catalyst.analysis.NoSuchTableException: Table or view 'nonexist' not found in database 'default';
```

**AFTER**
```scala
scala> sql("DROP TABLE IF EXISTS nonexist")
res0: org.apache.spark.sql.DataFrame = []
```

## How was this patch tested?

Manual because this is related to the warning messages instead of exceptions.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #15953 from dongjoon-hyun/SPARK-18517.
2016-11-21 16:14:59 -05:00
Dongjoon Hyun 07beb5d21c
[SPARK-18413][SQL] Add maxConnections JDBCOption
## What changes were proposed in this pull request?

This PR adds a new JDBCOption `maxConnections` which means the maximum number of simultaneous JDBC connections allowed. This option applies only to writing with coalesce operation if needed. It defaults to the number of partitions of RDD. Previously, SQL users cannot cannot control this while Scala/Java/Python users can use `coalesce` (or `repartition`) API.

**Reported Scenario**

For the following cases, the number of connections becomes 200 and database cannot handle all of them.

```sql
CREATE OR REPLACE TEMPORARY VIEW resultview
USING org.apache.spark.sql.jdbc
OPTIONS (
  url "jdbc:oracle:thin:10.129.10.111:1521:BKDB",
  dbtable "result",
  user "HIVE",
  password "HIVE"
);
-- set spark.sql.shuffle.partitions=200
INSERT OVERWRITE TABLE resultview SELECT g, count(1) AS COUNT FROM tnet.DT_LIVE_INFO GROUP BY g
```

## How was this patch tested?

Manual. Do the followings and see Spark UI.

**Step 1 (MySQL)**
```
CREATE TABLE t1 (a INT);
CREATE TABLE data (a INT);
INSERT INTO data VALUES (1);
INSERT INTO data VALUES (2);
INSERT INTO data VALUES (3);
```

**Step 2 (Spark)**
```scala
SPARK_HOME=$PWD bin/spark-shell --driver-memory 4G --driver-class-path mysql-connector-java-5.1.40-bin.jar
scala> sql("SET spark.sql.shuffle.partitions=3")
scala> sql("CREATE OR REPLACE TEMPORARY VIEW data USING org.apache.spark.sql.jdbc OPTIONS (url 'jdbc:mysql://localhost:3306/t', dbtable 'data', user 'root', password '')")
scala> sql("CREATE OR REPLACE TEMPORARY VIEW t1 USING org.apache.spark.sql.jdbc OPTIONS (url 'jdbc:mysql://localhost:3306/t', dbtable 't1', user 'root', password '', maxConnections '1')")
scala> sql("INSERT OVERWRITE TABLE t1 SELECT a FROM data GROUP BY a")
scala> sql("CREATE OR REPLACE TEMPORARY VIEW t1 USING org.apache.spark.sql.jdbc OPTIONS (url 'jdbc:mysql://localhost:3306/t', dbtable 't1', user 'root', password '', maxConnections '2')")
scala> sql("INSERT OVERWRITE TABLE t1 SELECT a FROM data GROUP BY a")
scala> sql("CREATE OR REPLACE TEMPORARY VIEW t1 USING org.apache.spark.sql.jdbc OPTIONS (url 'jdbc:mysql://localhost:3306/t', dbtable 't1', user 'root', password '', maxConnections '3')")
scala> sql("INSERT OVERWRITE TABLE t1 SELECT a FROM data GROUP BY a")
scala> sql("CREATE OR REPLACE TEMPORARY VIEW t1 USING org.apache.spark.sql.jdbc OPTIONS (url 'jdbc:mysql://localhost:3306/t', dbtable 't1', user 'root', password '', maxConnections '4')")
scala> sql("INSERT OVERWRITE TABLE t1 SELECT a FROM data GROUP BY a")
```

![maxconnections](https://cloud.githubusercontent.com/assets/9700541/20287987/ed8409c2-aa84-11e6-8aab-ae28e63fe54d.png)

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #15868 from dongjoon-hyun/SPARK-18413.
2016-11-21 13:57:36 +00:00
Reynold Xin b625a36ebc [HOTFIX][SQL] Fix DDLSuite failure. 2016-11-20 20:00:59 -08:00
Herman van Hovell 7ca7a63524 [SPARK-15214][SQL] Code-generation for Generate
## What changes were proposed in this pull request?

This PR adds code generation to `Generate`. It supports two code paths:
- General `TraversableOnce` based iteration. This used for regular `Generator` (code generation supporting) expressions. This code path expects the expression to return a `TraversableOnce[InternalRow]` and it will iterate over the returned collection. This PR adds code generation for the `stack` generator.
- Specialized `ArrayData/MapData` based iteration. This is used for the `explode`, `posexplode` & `inline` functions and operates directly on the `ArrayData`/`MapData` result that the child of the generator returns.

### Benchmarks
I have added some benchmarks and it seems we can create a nice speedup for explode:
#### Environment
```
Java HotSpot(TM) 64-Bit Server VM 1.8.0_92-b14 on Mac OS X 10.11.6
Intel(R) Core(TM) i7-4980HQ CPU  2.80GHz
```
#### Explode Array
##### Before
```
generate explode array:                  Best/Avg Time(ms)    Rate(M/s)   Per Row(ns)   Relative
------------------------------------------------------------------------------------------------
generate explode array wholestage off         7377 / 7607          2.3         439.7       1.0X
generate explode array wholestage on          6055 / 6086          2.8         360.9       1.2X
```
##### After
```
generate explode array:                  Best/Avg Time(ms)    Rate(M/s)   Per Row(ns)   Relative
------------------------------------------------------------------------------------------------
generate explode array wholestage off         7432 / 7696          2.3         443.0       1.0X
generate explode array wholestage on           631 /  646         26.6          37.6      11.8X
```
#### Explode Map
##### Before
```
generate explode map:                    Best/Avg Time(ms)    Rate(M/s)   Per Row(ns)   Relative
------------------------------------------------------------------------------------------------
generate explode map wholestage off         12792 / 12848          1.3         762.5       1.0X
generate explode map wholestage on          11181 / 11237          1.5         666.5       1.1X
```
##### After
```
generate explode map:                    Best/Avg Time(ms)    Rate(M/s)   Per Row(ns)   Relative
------------------------------------------------------------------------------------------------
generate explode map wholestage off         10949 / 10972          1.5         652.6       1.0X
generate explode map wholestage on             870 /  913         19.3          51.9      12.6X
```
#### Posexplode
##### Before
```
generate posexplode array:               Best/Avg Time(ms)    Rate(M/s)   Per Row(ns)   Relative
------------------------------------------------------------------------------------------------
generate posexplode array wholestage off      7547 / 7580          2.2         449.8       1.0X
generate posexplode array wholestage on       5786 / 5838          2.9         344.9       1.3X
```
##### After
```
generate posexplode array:               Best/Avg Time(ms)    Rate(M/s)   Per Row(ns)   Relative
------------------------------------------------------------------------------------------------
generate posexplode array wholestage off      7535 / 7548          2.2         449.1       1.0X
generate posexplode array wholestage on        620 /  624         27.1          37.0      12.1X
```
#### Inline
##### Before
```
generate inline array:                   Best/Avg Time(ms)    Rate(M/s)   Per Row(ns)   Relative
------------------------------------------------------------------------------------------------
generate inline array wholestage off          6935 / 6978          2.4         413.3       1.0X
generate inline array wholestage on           6360 / 6400          2.6         379.1       1.1X
```
##### After
```
generate inline array:                   Best/Avg Time(ms)    Rate(M/s)   Per Row(ns)   Relative
------------------------------------------------------------------------------------------------
generate inline array wholestage off          6940 / 6966          2.4         413.6       1.0X
generate inline array wholestage on           1002 / 1012         16.7          59.7       6.9X
```
#### Stack
##### Before
```
generate stack:                          Best/Avg Time(ms)    Rate(M/s)   Per Row(ns)   Relative
------------------------------------------------------------------------------------------------
generate stack wholestage off               12980 / 13104          1.3         773.7       1.0X
generate stack wholestage on                11566 / 11580          1.5         689.4       1.1X
```
##### After
```
generate stack:                          Best/Avg Time(ms)    Rate(M/s)   Per Row(ns)   Relative
------------------------------------------------------------------------------------------------
generate stack wholestage off               12875 / 12949          1.3         767.4       1.0X
generate stack wholestage on                   840 /  845         20.0          50.0      15.3X
```
## How was this patch tested?

Existing tests.

Author: Herman van Hovell <hvanhovell@databricks.com>
Author: Herman van Hovell <hvanhovell@questtec.nl>

Closes #13065 from hvanhovell/SPARK-15214.
2016-11-19 23:55:09 -08:00
Sean Owen ded5fefb6f
[SPARK-18448][CORE] Fix @since 2.1.0 on new SparkSession.close() method
## What changes were proposed in this pull request?

Fix since 2.1.0 on new SparkSession.close() method. I goofed in https://github.com/apache/spark/pull/15932 because it was back-ported to 2.1 instead of just master as originally planned.

Author: Sean Owen <sowen@cloudera.com>

Closes #15938 from srowen/SPARK-18448.2.
2016-11-19 13:48:56 +00:00
hyukjinkwon d5b1d5fc80
[SPARK-18445][BUILD][DOCS] Fix the markdown for Note:/NOTE:/Note that/'''Note:''' across Scala/Java API documentation
## What changes were proposed in this pull request?

It seems in Scala/Java,

- `Note:`
- `NOTE:`
- `Note that`
- `'''Note:'''`
- `note`

This PR proposes to fix those to `note` to be consistent.

**Before**

- Scala
  ![2016-11-17 6 16 39](https://cloud.githubusercontent.com/assets/6477701/20383180/1a7aed8c-acf2-11e6-9611-5eaf6d52c2e0.png)

- Java
  ![2016-11-17 6 14 41](https://cloud.githubusercontent.com/assets/6477701/20383096/c8ffc680-acf1-11e6-914a-33460bf1401d.png)

**After**

- Scala
  ![2016-11-17 6 16 44](https://cloud.githubusercontent.com/assets/6477701/20383167/09940490-acf2-11e6-937a-0d5e1dc2cadf.png)

- Java
  ![2016-11-17 6 13 39](https://cloud.githubusercontent.com/assets/6477701/20383132/e7c2a57e-acf1-11e6-9c47-b849674d4d88.png)

## How was this patch tested?

The notes were found via

```bash
grep -r "NOTE: " . | \ # Note:|NOTE:|Note that|'''Note:'''
grep -v "// NOTE: " | \  # starting with // does not appear in API documentation.
grep -E '.scala|.java' | \ # java/scala files
grep -v Suite | \ # exclude tests
grep -v Test | \ # exclude tests
grep -e 'org.apache.spark.api.java' \ # packages appear in API documenation
-e 'org.apache.spark.api.java.function' \ # note that this is a regular expression. So actual matches were mostly `org/apache/spark/api/java/functions ...`
-e 'org.apache.spark.api.r' \
...
```

```bash
grep -r "Note that " . | \ # Note:|NOTE:|Note that|'''Note:'''
grep -v "// Note that " | \  # starting with // does not appear in API documentation.
grep -E '.scala|.java' | \ # java/scala files
grep -v Suite | \ # exclude tests
grep -v Test | \ # exclude tests
grep -e 'org.apache.spark.api.java' \ # packages appear in API documenation
-e 'org.apache.spark.api.java.function' \
-e 'org.apache.spark.api.r' \
...
```

```bash
grep -r "Note: " . | \ # Note:|NOTE:|Note that|'''Note:'''
grep -v "// Note: " | \  # starting with // does not appear in API documentation.
grep -E '.scala|.java' | \ # java/scala files
grep -v Suite | \ # exclude tests
grep -v Test | \ # exclude tests
grep -e 'org.apache.spark.api.java' \ # packages appear in API documenation
-e 'org.apache.spark.api.java.function' \
-e 'org.apache.spark.api.r' \
...
```

```bash
grep -r "'''Note:'''" . | \ # Note:|NOTE:|Note that|'''Note:'''
grep -v "// '''Note:''' " | \  # starting with // does not appear in API documentation.
grep -E '.scala|.java' | \ # java/scala files
grep -v Suite | \ # exclude tests
grep -v Test | \ # exclude tests
grep -e 'org.apache.spark.api.java' \ # packages appear in API documenation
-e 'org.apache.spark.api.java.function' \
-e 'org.apache.spark.api.r' \
...
```

And then fixed one by one comparing with API documentation/access modifiers.

After that, manually tested via `jekyll build`.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #15889 from HyukjinKwon/SPARK-18437.
2016-11-19 11:24:15 +00:00
Sean Owen db9fb9baac
[SPARK-18448][CORE] SparkSession should implement java.lang.AutoCloseable like JavaSparkContext
## What changes were proposed in this pull request?

Just adds `close()` + `Closeable` as a synonym for `stop()`. This makes it usable in Java in try-with-resources, as suggested by ash211  (`Closeable` extends `AutoCloseable` BTW)

## How was this patch tested?

Existing tests

Author: Sean Owen <sowen@cloudera.com>

Closes #15932 from srowen/SPARK-18448.
2016-11-19 09:00:11 +00:00
Shixiong Zhu 2a40de408b [SPARK-18497][SS] Make ForeachSink support watermark
## What changes were proposed in this pull request?

The issue in ForeachSink is the new created DataSet still uses the old QueryExecution. When `foreachPartition` is called, `QueryExecution.toString` will be called and then fail because it doesn't know how to plan EventTimeWatermark.

This PR just replaces the QueryExecution with IncrementalExecution to fix the issue.

## How was this patch tested?

`test("foreach with watermark")`.

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #15934 from zsxwing/SPARK-18497.
2016-11-18 16:34:38 -08:00
Reynold Xin 6f7ff75091 [SPARK-18505][SQL] Simplify AnalyzeColumnCommand
## What changes were proposed in this pull request?
I'm spending more time at the design & code level for cost-based optimizer now, and have found a number of issues related to maintainability and compatibility that I will like to address.

This is a small pull request to clean up AnalyzeColumnCommand:

1. Removed warning on duplicated columns. Warnings in log messages are useless since most users that run SQL don't see them.
2. Removed the nested updateStats function, by just inlining the function.
3. Renamed a few functions to better reflect what they do.
4. Removed the factory apply method for ColumnStatStruct. It is a bad pattern to use a apply method that returns an instantiation of a class that is not of the same type (ColumnStatStruct.apply used to return CreateNamedStruct).
5. Renamed ColumnStatStruct to just AnalyzeColumnCommand.
6. Added more documentation explaining some of the non-obvious return types and code blocks.

In follow-up pull requests, I'd like to address the following:

1. Get rid of the Map[String, ColumnStat] map, since internally we should be using Attribute to reference columns, rather than strings.
2. Decouple the fields exposed by ColumnStat and internals of Spark SQL's execution path. Currently the two are coupled because ColumnStat takes in an InternalRow.
3. Correctness: Remove code path that stores statistics in the catalog using the base64 encoding of the UnsafeRow format, which is not stable across Spark versions.
4. Clearly document the data representation stored in the catalog for statistics.

## How was this patch tested?
Affected test cases have been updated.

Author: Reynold Xin <rxin@databricks.com>

Closes #15933 from rxin/SPARK-18505.
2016-11-18 16:34:11 -08:00
Shixiong Zhu e5f5c29e02 [SPARK-18477][SS] Enable interrupts for HDFS in HDFSMetadataLog
## What changes were proposed in this pull request?

HDFS `write` may just hang until timeout if some network error happens. It's better to enable interrupts to allow stopping the query fast on HDFS.

This PR just changes the logic to only disable interrupts for local file system, as HADOOP-10622 only happens for local file system.

## How was this patch tested?

Jenkins

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #15911 from zsxwing/interrupt-on-dfs.
2016-11-18 16:13:02 -08:00
Tyson Condie 51baca2219 [SPARK-18187][SQL] CompactibleFileStreamLog should not use "compactInterval" direcly with user setting.
## What changes were proposed in this pull request?
CompactibleFileStreamLog relys on "compactInterval" to detect a compaction batch. If the "compactInterval" is reset by user, CompactibleFileStreamLog will return wrong answer, resulting data loss. This PR procides a way to check the validity of 'compactInterval', and calculate an appropriate value.

## How was this patch tested?
When restart a stream, we change the 'spark.sql.streaming.fileSource.log.compactInterval' different with the former one.

The primary solution to this issue was given by uncleGen
Added extensions include an additional metadata field in OffsetSeq and CompactibleFileStreamLog APIs. zsxwing

Author: Tyson Condie <tcondie@gmail.com>
Author: genmao.ygm <genmao.ygm@genmaoygmdeMacBook-Air.local>

Closes #15852 from tcondie/spark-18187.
2016-11-18 11:11:24 -08:00
Josh Rosen d9dd979d17 [SPARK-18462] Fix ClassCastException in SparkListenerDriverAccumUpdates event
## What changes were proposed in this pull request?

This patch fixes a `ClassCastException: java.lang.Integer cannot be cast to java.lang.Long` error which could occur in the HistoryServer while trying to process a deserialized `SparkListenerDriverAccumUpdates` event.

The problem stems from how `jackson-module-scala` handles primitive type parameters (see https://github.com/FasterXML/jackson-module-scala/wiki/FAQ#deserializing-optionint-and-other-primitive-challenges for more details). This was causing a problem where our code expected a field to be deserialized as a `(Long, Long)` tuple but we got an `(Int, Int)` tuple instead.

This patch hacks around this issue by registering a custom `Converter` with Jackson in order to deserialize the tuples as `(Object, Object)` and perform the appropriate casting.

## How was this patch tested?

New regression tests in `SQLListenerSuite`.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #15922 from JoshRosen/SPARK-18462.
2016-11-17 18:45:15 -08:00
root b0aa1aa1af
[SPARK-18490][SQL] duplication nodename extrainfo for ShuffleExchange
## What changes were proposed in this pull request?

   In ShuffleExchange, the nodename's extraInfo are the same when exchangeCoordinator.isEstimated
 is true or false.

Merge the two situation in the PR.

Author: root <root@iZbp1gsnrlfzjxh82cz80vZ.(none)>

Closes #15920 from windpiger/DupNodeNameShuffleExchange.
2016-11-17 17:04:19 +00:00
anabranch 49b6f456ac
[SPARK-18365][DOCS] Improve Sample Method Documentation
## What changes were proposed in this pull request?

I found the documentation for the sample method to be confusing, this adds more clarification across all languages.

- [x] Scala
- [x] Python
- [x] R
- [x] RDD Scala
- [ ] RDD Python with SEED
- [X] RDD Java
- [x] RDD Java with SEED
- [x] RDD Python

## How was this patch tested?

NA

Please review https://cwiki.apache.org/confluence/display/SPARK/Contributing+to+Spark before opening a pull request.

Author: anabranch <wac.chambers@gmail.com>
Author: Bill Chambers <bill@databricks.com>

Closes #15815 from anabranch/SPARK-18365.
2016-11-17 11:34:55 +00:00
Wenchen Fan 07b3f045cd [SPARK-18464][SQL] support old table which doesn't store schema in metastore
## What changes were proposed in this pull request?

Before Spark 2.1, users can create an external data source table without schema, and we will infer the table schema at runtime. In Spark 2.1, we decided to infer the schema when the table was created, so that we don't need to infer it again and again at runtime.

This is a good improvement, but we should still respect and support old tables which doesn't store table schema in metastore.

## How was this patch tested?

regression test.

Author: Wenchen Fan <wenchen@databricks.com>

Closes #15900 from cloud-fan/hive-catalog.
2016-11-17 00:00:38 -08:00
Tathagata Das 0048ce7ce6 [SPARK-18459][SPARK-18460][STRUCTUREDSTREAMING] Rename triggerId to batchId and add triggerDetails to json in StreamingQueryStatus
## What changes were proposed in this pull request?

SPARK-18459: triggerId seems like a number that should be increasing with each trigger, whether or not there is data in it. However, actually, triggerId increases only where there is a batch of data in a trigger. So its better to rename it to batchId.

SPARK-18460: triggerDetails was missing from json representation. Fixed it.

## How was this patch tested?
Updated existing unit tests.

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #15895 from tdas/SPARK-18459.
2016-11-16 10:00:59 -08:00
gatorsmile 608ecc512b [SPARK-18415][SQL] Weird Plan Output when CTE used in RunnableCommand
### What changes were proposed in this pull request?
Currently, when CTE is used in RunnableCommand, the Analyzer does not replace the logical node `With`. The child plan of RunnableCommand is not resolved. Thus, the output of the `With` plan node looks very confusing.
For example,
```
sql(
  """
    |CREATE VIEW cte_view AS
    |WITH w AS (SELECT 1 AS n), cte1 (select 2), cte2 as (select 3)
    |SELECT n FROM w
  """.stripMargin).explain()
```
The output is like
```
ExecutedCommand
   +- CreateViewCommand `cte_view`, WITH w AS (SELECT 1 AS n), cte1 (select 2), cte2 as (select 3)
SELECT n FROM w, false, false, PersistedView
         +- 'With [(w,SubqueryAlias w
+- Project [1 AS n#16]
   +- OneRowRelation$
), (cte1,'SubqueryAlias cte1
+- 'Project [unresolvedalias(2, None)]
   +- OneRowRelation$
), (cte2,'SubqueryAlias cte2
+- 'Project [unresolvedalias(3, None)]
   +- OneRowRelation$
)]
            +- 'Project ['n]
               +- 'UnresolvedRelation `w`
```
After the fix, the output is as shown below.
```
ExecutedCommand
   +- CreateViewCommand `cte_view`, WITH w AS (SELECT 1 AS n), cte1 (select 2), cte2 as (select 3)
SELECT n FROM w, false, false, PersistedView
         +- CTE [w, cte1, cte2]
            :  :- SubqueryAlias w
            :  :  +- Project [1 AS n#16]
            :  :     +- OneRowRelation$
            :  :- 'SubqueryAlias cte1
            :  :  +- 'Project [unresolvedalias(2, None)]
            :  :     +- OneRowRelation$
            :  +- 'SubqueryAlias cte2
            :     +- 'Project [unresolvedalias(3, None)]
            :        +- OneRowRelation$
            +- 'Project ['n]
               +- 'UnresolvedRelation `w`
```

BTW, this PR also fixes the output of the view type.

### How was this patch tested?
Manual

Author: gatorsmile <gatorsmile@gmail.com>

Closes #15854 from gatorsmile/cteName.
2016-11-16 08:25:15 -08:00
Dongjoon Hyun 74f5c2176d [SPARK-18433][SQL] Improve DataSource option keys to be more case-insensitive
## What changes were proposed in this pull request?

This PR aims to improve DataSource option keys to be more case-insensitive

DataSource partially use CaseInsensitiveMap in code-path. For example, the following fails to find url.

```scala
val df = spark.createDataFrame(sparkContext.parallelize(arr2x2), schema2)
df.write.format("jdbc")
    .option("UrL", url1)
    .option("dbtable", "TEST.SAVETEST")
    .options(properties.asScala)
    .save()
```

This PR makes DataSource options to use CaseInsensitiveMap internally and also makes DataSource to use CaseInsensitiveMap generally except `InMemoryFileIndex` and `InsertIntoHadoopFsRelationCommand`. We can not pass them CaseInsensitiveMap because they creates new case-sensitive HadoopConfs by calling newHadoopConfWithOptions(options) inside.

## How was this patch tested?

Pass the Jenkins test with newly added test cases.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #15884 from dongjoon-hyun/SPARK-18433.
2016-11-16 17:12:18 +08:00
Wenchen Fan 4ac9759f80 [SPARK-18377][SQL] warehouse path should be a static conf
## What changes were proposed in this pull request?

it's weird that every session can set its own warehouse path at runtime, we should forbid it and make it a static conf.

## How was this patch tested?

existing tests.

Author: Wenchen Fan <wenchen@databricks.com>

Closes #15825 from cloud-fan/warehouse.
2016-11-15 20:24:36 -08:00
Dongjoon Hyun 3ce057d001 [SPARK-17732][SQL] ALTER TABLE DROP PARTITION should support comparators
## What changes were proposed in this pull request?

This PR aims to support `comparators`, e.g. '<', '<=', '>', '>=', again in Apache Spark 2.0 for backward compatibility.

**Spark 1.6**

``` scala
scala> sql("CREATE TABLE sales(id INT) PARTITIONED BY (country STRING, quarter STRING)")
res0: org.apache.spark.sql.DataFrame = [result: string]

scala> sql("ALTER TABLE sales DROP PARTITION (country < 'KR')")
res1: org.apache.spark.sql.DataFrame = [result: string]
```

**Spark 2.0**

``` scala
scala> sql("CREATE TABLE sales(id INT) PARTITIONED BY (country STRING, quarter STRING)")
res0: org.apache.spark.sql.DataFrame = []

scala> sql("ALTER TABLE sales DROP PARTITION (country < 'KR')")
org.apache.spark.sql.catalyst.parser.ParseException:
mismatched input '<' expecting {')', ','}(line 1, pos 42)
```

After this PR, it's supported.

## How was this patch tested?

Pass the Jenkins test with a newly added testcase.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #15704 from dongjoon-hyun/SPARK-17732-2.
2016-11-15 15:59:04 -08:00
Tathagata Das 1ae4652b7e [SPARK-18440][STRUCTURED STREAMING] Pass correct query execution to FileFormatWriter
## What changes were proposed in this pull request?

SPARK-18012 refactored the file write path in FileStreamSink using FileFormatWriter which always uses the default non-streaming QueryExecution to perform the writes. This is wrong for FileStreamSink, because the streaming QueryExecution (i.e. IncrementalExecution) should be used for correctly incrementalizing aggregation. The addition of watermarks in SPARK-18124, file stream sink should logically supports aggregation + watermark + append mode. But actually it fails with
```
16:23:07.389 ERROR org.apache.spark.sql.execution.streaming.StreamExecution: Query query-0 terminated with error
java.lang.AssertionError: assertion failed: No plan for EventTimeWatermark timestamp#7: timestamp, interval 10 seconds
+- LocalRelation [timestamp#7]

	at scala.Predef$.assert(Predef.scala:170)
	at org.apache.spark.sql.catalyst.planning.QueryPlanner.plan(QueryPlanner.scala:92)
	at org.apache.spark.sql.catalyst.planning.QueryPlanner$$anonfun$2$$anonfun$apply$2.apply(QueryPlanner.scala:77)
	at org.apache.spark.sql.catalyst.planning.QueryPlanner$$anonfun$2$$anonfun$apply$2.apply(QueryPlanner.scala:74)
	at scala.collection.TraversableOnce$$anonfun$foldLeft$1.apply(TraversableOnce.scala:157)
	at scala.collection.TraversableOnce$$anonfun$foldLeft$1.apply(TraversableOnce.scala:157)
	at scala.collection.Iterator$class.foreach(Iterator.scala:893)
	at scala.collection.AbstractIterator.foreach(Iterator.scala:1336)
	at scala.collection.TraversableOnce$class.foldLeft(TraversableOnce.scala:157)
	at scala.collection.AbstractIterator.foldLeft(Iterator.scala:1336)
	at org.apache.spark.sql.catalyst.planning.QueryPlanner$$anonfun$2.apply(QueryPlanner.scala:74)
	at org.apache.spark.sql.catalyst.planning.QueryPlanner$$anonfun$2.apply(QueryPlanner.scala:66)
	at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:434)
	at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:440)
	at org.apache.spark.sql.catalyst.planning.QueryPlanner.plan(QueryPlanner.scala:92)
	at org.apache.spark.sql.catalyst.planning.QueryPlanner$$anonfun$2$$anonfun$apply$2.apply(QueryPlanner.scala:77)
	at org.apache.spark.sql.catalyst.planning.QueryPlanner$$anonfun$2$$anonfun$apply$2.apply(QueryPlanner.scala:74)
```

This PR fixes it by passing the correct query execution.

## How was this patch tested?
New unit test

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #15885 from tdas/SPARK-18440.
2016-11-15 15:12:30 -08:00
Burak Yavuz 2afdaa9805 [SPARK-18337] Complete mode memory sinks should be able to recover from checkpoints
## What changes were proposed in this pull request?

It would be nice if memory sinks can also recover from checkpoints. For correctness reasons, the only time we should support it is in `Complete` OutputMode. We can support this in CompleteMode, because the output of the StateStore is already persisted in the checkpoint directory.

## How was this patch tested?

Unit test

Author: Burak Yavuz <brkyvz@gmail.com>

Closes #15801 from brkyvz/mem-stream.
2016-11-15 13:09:29 -08:00
genmao.ygm 745ab8bc50 [SPARK-18379][SQL] Make the parallelism of parallelPartitionDiscovery configurable.
## What changes were proposed in this pull request?

The largest parallelism in PartitioningAwareFileIndex #listLeafFilesInParallel() is 10000 in hard code. We may need to make this number configurable. And in PR, I reduce it to 100.

## How was this patch tested?

Existing ut.

Author: genmao.ygm <genmao.ygm@genmaoygmdeMacBook-Air.local>
Author: dylon <hustyugm@gmail.com>

Closes #15829 from uncleGen/SPARK-18379.
2016-11-15 10:32:43 -08:00
Herman van Hovell f14ae4900a [SPARK-18300][SQL] Do not apply foldable propagation with expand as a child.
## What changes were proposed in this pull request?
The `FoldablePropagation` optimizer rule, pulls foldable values out from under an `Expand`. This breaks the `Expand` in two ways:

- It rewrites the output attributes of the `Expand`. We explicitly define output attributes for `Expand`, these are (unfortunately) considered as part of the expressions of the `Expand` and can be rewritten.
- Expand can actually change the column (it will typically re-use the attributes or the underlying plan). This means that we cannot safely propagate the expressions from under an `Expand`.

This PR fixes this and (hopefully) other issues by explicitly whitelisting allowed operators.

## How was this patch tested?
Added tests to `FoldablePropagationSuite` and to `SQLQueryTestSuite`.

Author: Herman van Hovell <hvanhovell@databricks.com>

Closes #15857 from hvanhovell/SPARK-18300.
2016-11-15 06:59:25 -08:00
gatorsmile 86430cc4e8 [SPARK-18430][SQL] Fixed Exception Messages when Hitting an Invocation Exception of Function Lookup
### What changes were proposed in this pull request?
When the exception is an invocation exception during function lookup, we return a useless/confusing error message:

For example,
```Scala
df.selectExpr("concat_ws()")
```
Below is the error message we got:
```
null; line 1 pos 0
org.apache.spark.sql.AnalysisException: null; line 1 pos 0
```

To get the meaningful error message, we need to get the cause. The fix is exactly the same as what we did in https://github.com/apache/spark/pull/12136. After the fix, the message we got is the exception issued in the constuctor of function implementation:
```
requirement failed: concat_ws requires at least one argument.; line 1 pos 0
org.apache.spark.sql.AnalysisException: requirement failed: concat_ws requires at least one argument.; line 1 pos 0
```

### How was this patch tested?
Added test cases.

Author: gatorsmile <gatorsmile@gmail.com>

Closes #15878 from gatorsmile/functionNotFound.
2016-11-14 21:21:34 -08:00
Michael Armbrust c07187823a [SPARK-18124] Observed delay based Event Time Watermarks
This PR adds a new method `withWatermark` to the `Dataset` API, which can be used specify an _event time watermark_.  An event time watermark allows the streaming engine to reason about the point in time after which we no longer expect to see late data.  This PR also has augmented `StreamExecution` to use this watermark for several purposes:
  - To know when a given time window aggregation is finalized and thus results can be emitted when using output modes that do not allow updates (e.g. `Append` mode).
  - To minimize the amount of state that we need to keep for on-going aggregations, by evicting state for groups that are no longer expected to change.  Although, we do still maintain all state if the query requires (i.e. if the event time is not present in the `groupBy` or when running in `Complete` mode).

An example that emits windowed counts of records, waiting up to 5 minutes for late data to arrive.
```scala
df.withWatermark("eventTime", "5 minutes")
  .groupBy(window($"eventTime", "1 minute") as 'window)
  .count()
  .writeStream
  .format("console")
  .mode("append") // In append mode, we only output finalized aggregations.
  .start()
```

### Calculating the watermark.
The current event time is computed by looking at the `MAX(eventTime)` seen this epoch across all of the partitions in the query minus some user defined _delayThreshold_.  An additional constraint is that the watermark must increase monotonically.

Note that since we must coordinate this value across partitions occasionally, the actual watermark used is only guaranteed to be at least `delay` behind the actual event time.  In some cases we may still process records that arrive more than delay late.

This mechanism was chosen for the initial implementation over processing time for two reasons:
  - it is robust to downtime that could affect processing delay
  - it does not require syncing of time or timezones between the producer and the processing engine.

### Other notable implementation details
 - A new trigger metric `eventTimeWatermark` outputs the current value of the watermark.
 - We mark the event time column in the `Attribute` metadata using the key `spark.watermarkDelay`.  This allows downstream operations to know which column holds the event time.  Operations like `window` propagate this metadata.
 - `explain()` marks the watermark with a suffix of `-T${delayMs}` to ease debugging of how this information is propagated.
 - Currently, we don't filter out late records, but instead rely on the state store to avoid emitting records that are both added and filtered in the same epoch.

### Remaining in this PR
 - [ ] The test for recovery is currently failing as we don't record the watermark used in the offset log.  We will need to do so to ensure determinism, but this is deferred until #15626 is merged.

### Other follow-ups
There are some natural additional features that we should consider for future work:
 - Ability to write records that arrive too late to some external store in case any out-of-band remediation is required.
 - `Update` mode so you can get partial results before a group is evicted.
 - Other mechanisms for calculating the watermark.  In particular a watermark based on quantiles would be more robust to outliers.

Author: Michael Armbrust <michael@databricks.com>

Closes #15702 from marmbrus/watermarks.
2016-11-14 16:46:26 -08:00
Nattavut Sutyanyong bd85603ba5 [SPARK-17348][SQL] Incorrect results from subquery transformation
## What changes were proposed in this pull request?

Return an Analysis exception when there is a correlated non-equality predicate in a subquery and the correlated column from the outer reference is not from the immediate parent operator of the subquery. This PR prevents incorrect results from subquery transformation in such case.

Test cases, both positive and negative tests, are added.

## How was this patch tested?

sql/test, catalyst/test, hive/test, and scenarios that will produce incorrect results without this PR and product correct results when subquery transformation does happen.

Author: Nattavut Sutyanyong <nsy.can@gmail.com>

Closes #15763 from nsyca/spark-17348.
2016-11-14 20:59:15 +01:00
Tathagata Das bdfe60ac92 [SPARK-18416][STRUCTURED STREAMING] Fixed temp file leak in state store
## What changes were proposed in this pull request?

StateStore.get() causes temporary files to be created immediately, even if the store is not used to make updates for new version. The temp file is not closed as store.commit() is not called in those cases, thus keeping the output stream to temp file open forever.

This PR fixes it by opening the temp file only when there are updates being made.

## How was this patch tested?

New unit test

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #15859 from tdas/SPARK-18416.
2016-11-14 10:03:01 -08:00
Dongjoon Hyun d42bb7cc4e [SPARK-17982][SQL] SQLBuilder should wrap the generated SQL with parenthesis for LIMIT
## What changes were proposed in this pull request?

Currently, `SQLBuilder` handles `LIMIT` by always adding `LIMIT` at the end of the generated subSQL. It makes `RuntimeException`s like the following. This PR adds a parenthesis always except `SubqueryAlias` is used together with `LIMIT`.

**Before**

``` scala
scala> sql("CREATE TABLE tbl(id INT)")
scala> sql("CREATE VIEW v1(id2) AS SELECT id FROM tbl LIMIT 2")
java.lang.RuntimeException: Failed to analyze the canonicalized SQL: ...
```

**After**

``` scala
scala> sql("CREATE TABLE tbl(id INT)")
scala> sql("CREATE VIEW v1(id2) AS SELECT id FROM tbl LIMIT 2")
scala> sql("SELECT id2 FROM v1")
res4: org.apache.spark.sql.DataFrame = [id2: int]
```

**Fixed cases in this PR**

The following two cases are the detail query plans having problematic SQL generations.

1. `SELECT * FROM (SELECT id FROM tbl LIMIT 2)`

    Please note that **FROM SELECT** part of the generated SQL in the below. When we don't use '()' for limit, this fails.

```scala
# Original logical plan:
Project [id#1]
+- GlobalLimit 2
   +- LocalLimit 2
      +- Project [id#1]
         +- MetastoreRelation default, tbl

# Canonicalized logical plan:
Project [gen_attr_0#1 AS id#4]
+- SubqueryAlias tbl
   +- Project [gen_attr_0#1]
      +- GlobalLimit 2
         +- LocalLimit 2
            +- Project [gen_attr_0#1]
               +- SubqueryAlias gen_subquery_0
                  +- Project [id#1 AS gen_attr_0#1]
                     +- SQLTable default, tbl, [id#1]

# Generated SQL:
SELECT `gen_attr_0` AS `id` FROM (SELECT `gen_attr_0` FROM SELECT `gen_attr_0` FROM (SELECT `id` AS `gen_attr_0` FROM `default`.`tbl`) AS gen_subquery_0 LIMIT 2) AS tbl
```

2. `SELECT * FROM (SELECT id FROM tbl TABLESAMPLE (2 ROWS))`

    Please note that **((~~~) AS gen_subquery_0 LIMIT 2)** in the below. When we use '()' for limit on `SubqueryAlias`, this fails.

```scala
# Original logical plan:
Project [id#1]
+- Project [id#1]
   +- GlobalLimit 2
      +- LocalLimit 2
         +- MetastoreRelation default, tbl

# Canonicalized logical plan:
Project [gen_attr_0#1 AS id#4]
+- SubqueryAlias tbl
   +- Project [gen_attr_0#1]
      +- GlobalLimit 2
         +- LocalLimit 2
            +- SubqueryAlias gen_subquery_0
               +- Project [id#1 AS gen_attr_0#1]
                  +- SQLTable default, tbl, [id#1]

# Generated SQL:
SELECT `gen_attr_0` AS `id` FROM (SELECT `gen_attr_0` FROM ((SELECT `id` AS `gen_attr_0` FROM `default`.`tbl`) AS gen_subquery_0 LIMIT 2)) AS tbl
```

## How was this patch tested?

Pass the Jenkins test with a newly added test case.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #15546 from dongjoon-hyun/SPARK-17982.
2016-11-11 13:28:18 -08:00
Eric Liang a3356343cb [SPARK-18185] Fix all forms of INSERT / OVERWRITE TABLE for Datasource tables
## What changes were proposed in this pull request?

As of current 2.1, INSERT OVERWRITE with dynamic partitions against a Datasource table will overwrite the entire table instead of only the partitions matching the static keys, as in Hive. It also doesn't respect custom partition locations.

This PR adds support for all these operations to Datasource tables managed by the Hive metastore. It is implemented as follows
- During planning time, the full set of partitions affected by an INSERT or OVERWRITE command is read from the Hive metastore.
- The planner identifies any partitions with custom locations and includes this in the write task metadata.
- FileFormatWriter tasks refer to this custom locations map when determining where to write for dynamic partition output.
- When the write job finishes, the set of written partitions is compared against the initial set of matched partitions, and the Hive metastore is updated to reflect the newly added / removed partitions.

It was necessary to introduce a method for staging files with absolute output paths to `FileCommitProtocol`. These files are not handled by the Hadoop output committer but are moved to their final locations when the job commits.

The overwrite behavior of legacy Datasource tables is also changed: no longer will the entire table be overwritten if a partial partition spec is present.

cc cloud-fan yhuai

## How was this patch tested?

Unit tests, existing tests.

Author: Eric Liang <ekl@databricks.com>
Author: Wenchen Fan <wenchen@databricks.com>

Closes #15814 from ericl/sc-5027.
2016-11-10 17:00:43 -08:00
Wenchen Fan 2f7461f313 [SPARK-17990][SPARK-18302][SQL] correct several partition related behaviours of ExternalCatalog
## What changes were proposed in this pull request?

This PR corrects several partition related behaviors of `ExternalCatalog`:

1. default partition location should not always lower case the partition column names in path string(fix `HiveExternalCatalog`)
2. rename partition should not always lower case the partition column names in updated partition path string(fix `HiveExternalCatalog`)
3. rename partition should update the partition location only for managed table(fix `InMemoryCatalog`)
4. create partition with existing directory should be fine(fix `InMemoryCatalog`)
5. create partition with non-existing directory should create that directory(fix `InMemoryCatalog`)
6. drop partition from external table should not delete the directory(fix `InMemoryCatalog`)

## How was this patch tested?

new tests in `ExternalCatalogSuite`

Author: Wenchen Fan <wenchen@databricks.com>

Closes #15797 from cloud-fan/partition.
2016-11-10 13:42:48 -08:00
Michael Allman b533fa2b20 [SPARK-17993][SQL] Fix Parquet log output redirection
(Link to Jira issue: https://issues.apache.org/jira/browse/SPARK-17993)
## What changes were proposed in this pull request?

PR #14690 broke parquet log output redirection for converted partitioned Hive tables. For example, when querying parquet files written by Parquet-mr 1.6.0 Spark prints a torrent of (harmless) warning messages from the Parquet reader:

```
Oct 18, 2016 7:42:18 PM WARNING: org.apache.parquet.CorruptStatistics: Ignoring statistics because created_by could not be parsed (see PARQUET-251): parquet-mr version 1.6.0
org.apache.parquet.VersionParser$VersionParseException: Could not parse created_by: parquet-mr version 1.6.0 using format: (.+) version ((.*) )?\(build ?(.*)\)
    at org.apache.parquet.VersionParser.parse(VersionParser.java:112)
    at org.apache.parquet.CorruptStatistics.shouldIgnoreStatistics(CorruptStatistics.java:60)
    at org.apache.parquet.format.converter.ParquetMetadataConverter.fromParquetStatistics(ParquetMetadataConverter.java:263)
    at org.apache.parquet.hadoop.ParquetFileReader$Chunk.readAllPages(ParquetFileReader.java:583)
    at org.apache.parquet.hadoop.ParquetFileReader.readNextRowGroup(ParquetFileReader.java:513)
    at org.apache.spark.sql.execution.datasources.parquet.VectorizedParquetRecordReader.checkEndOfRowGroup(VectorizedParquetRecordReader.java:270)
    at org.apache.spark.sql.execution.datasources.parquet.VectorizedParquetRecordReader.nextBatch(VectorizedParquetRecordReader.java:225)
    at org.apache.spark.sql.execution.datasources.parquet.VectorizedParquetRecordReader.nextKeyValue(VectorizedParquetRecordReader.java:137)
    at org.apache.spark.sql.execution.datasources.RecordReaderIterator.hasNext(RecordReaderIterator.scala:39)
    at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:102)
    at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:162)
    at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:102)
    at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.scan_nextBatch$(Unknown Source)
    at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.processNext(Unknown Source)
    at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
    at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$8$$anon$1.hasNext(WholeStageCodegenExec.scala:372)
    at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:231)
    at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:225)
    at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:803)
    at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:803)
    at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
    at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319)
    at org.apache.spark.rdd.RDD.iterator(RDD.scala:283)
    at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
    at org.apache.spark.scheduler.Task.run(Task.scala:99)
    at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:282)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at java.lang.Thread.run(Thread.java:745)
```

This only happens during execution, not planning, and it doesn't matter what log level the `SparkContext` is set to. That's because Parquet (versions < 1.9) doesn't use slf4j for logging. Note, you can tell that log redirection is not working here because the log message format does not conform to the default Spark log message format.

This is a regression I noted as something we needed to fix as a follow up.

It appears that the problem arose because we removed the call to `inferSchema` during Hive table conversion. That call is what triggered the output redirection.

## How was this patch tested?

I tested this manually in four ways:
1. Executing `spark.sqlContext.range(10).selectExpr("id as a").write.mode("overwrite").parquet("test")`.
2. Executing `spark.read.format("parquet").load(legacyParquetFile).show` for a Parquet file `legacyParquetFile` written using Parquet-mr 1.6.0.
3. Executing `select * from legacy_parquet_table limit 1` for some unpartitioned Parquet-based Hive table written using Parquet-mr 1.6.0.
4. Executing `select * from legacy_partitioned_parquet_table where partcol=x limit 1` for some partitioned Parquet-based Hive table written using Parquet-mr 1.6.0.

I ran each test with a new instance of `spark-shell` or `spark-sql`.

Incidentally, I found that test case 3 was not a regression—redirection was not occurring in the master codebase prior to #14690.

I spent some time working on a unit test, but based on my experience working on this ticket I feel that automated testing here is far from feasible.

cc ericl dongjoon-hyun

Author: Michael Allman <michael@videoamp.com>

Closes #15538 from mallman/spark-17993-fix_parquet_log_redirection.
2016-11-10 13:41:13 -08:00
Wenchen Fan 6021c95a3a [SPARK-18147][SQL] do not fail for very complex aggregator result type
## What changes were proposed in this pull request?

~In `TypedAggregateExpression.evaluateExpression`, we may create `ReferenceToExpressions` with `CreateStruct`, and `CreateStruct` may generate too many codes and split them into several methods.  `ReferenceToExpressions` will replace `BoundReference` in `CreateStruct` with `LambdaVariable`, which can only be used as local variables and doesn't work if we split the generated code.~

It's already fixed by #15693 , this pr adds regression test

## How was this patch tested?

new test in `DatasetAggregatorSuite`

Author: Wenchen Fan <wenchen@databricks.com>

Closes #15807 from cloud-fan/typed-agg.
2016-11-10 13:03:59 +08:00
Tyson Condie 3f62e1b5d9 [SPARK-17829][SQL] Stable format for offset log
## What changes were proposed in this pull request?

Currently we use java serialization for the WAL that stores the offsets contained in each batch. This has two main issues:
It can break across spark releases (though this is not the only thing preventing us from upgrading a running query)
It is unnecessarily opaque to the user.
I'd propose we require offsets to provide a user readable serialization and use that instead. JSON is probably a good option.
## How was this patch tested?

Tests were added for KafkaSourceOffset in [KafkaSourceOffsetSuite](external/kafka-0-10-sql/src/test/scala/org/apache/spark/sql/kafka010/KafkaSourceOffsetSuite.scala) and for LongOffset in [OffsetSuite](sql/core/src/test/scala/org/apache/spark/sql/streaming/OffsetSuite.scala)

Please review https://cwiki.apache.org/confluence/display/SPARK/Contributing+to+Spark before opening a pull request.

zsxwing marmbrus

Author: Tyson Condie <tcondie@gmail.com>
Author: Tyson Condie <tcondie@clash.local>

Closes #15626 from tcondie/spark-8360.
2016-11-09 15:03:22 -08:00
Herman van Hovell d8b81f778a [SPARK-18370][SQL] Add table information to InsertIntoHadoopFsRelationCommand
## What changes were proposed in this pull request?
`InsertIntoHadoopFsRelationCommand` does not keep track if it inserts into a table and what table it inserts to. This can make debugging these statements problematic. This PR adds table information the `InsertIntoHadoopFsRelationCommand`. Explaining this SQL command `insert into prq select * from range(0, 100000)` now yields the following executed plan:
```
== Physical Plan ==
ExecutedCommand
   +- InsertIntoHadoopFsRelationCommand file:/dev/assembly/spark-warehouse/prq, ParquetFormat, <function1>, Map(serialization.format -> 1, path -> file:/dev/assembly/spark-warehouse/prq), Append, CatalogTable(
	Table: `default`.`prq`
	Owner: hvanhovell
	Created: Wed Nov 09 17:42:30 CET 2016
	Last Access: Thu Jan 01 01:00:00 CET 1970
	Type: MANAGED
	Schema: [StructField(id,LongType,true)]
	Provider: parquet
	Properties: [transient_lastDdlTime=1478709750]
	Storage(Location: file:/dev/assembly/spark-warehouse/prq, InputFormat: org.apache.hadoop.hive.ql.io.parquet.MapredParquetInputFormat, OutputFormat: org.apache.hadoop.hive.ql.io.parquet.MapredParquetOutputFormat, Serde: org.apache.hadoop.hive.ql.io.parquet.serde.ParquetHiveSerDe, Properties: [serialization.format=1]))
         +- Project [id#7L]
            +- Range (0, 100000, step=1, splits=None)
```

## How was this patch tested?
Added extra checks to the `ParquetMetastoreSuite`

Author: Herman van Hovell <hvanhovell@databricks.com>

Closes #15832 from hvanhovell/SPARK-18370.
2016-11-09 12:26:09 -08:00
gatorsmile e256392a12 [SPARK-17659][SQL] Partitioned View is Not Supported By SHOW CREATE TABLE
### What changes were proposed in this pull request?

`Partitioned View` is not supported by SPARK SQL. For Hive partitioned view, SHOW CREATE TABLE is unable to generate the right DDL. Thus, SHOW CREATE TABLE should not support it like the other Hive-only features. This PR is to issue an exception when detecting the view is a partitioned view.
### How was this patch tested?

Added a test case

Author: gatorsmile <gatorsmile@gmail.com>

Closes #15233 from gatorsmile/partitionedView.
2016-11-09 00:11:48 -08:00
Eric Liang 4afa39e223 [SPARK-18333][SQL] Revert hacks in parquet and orc reader to support case insensitive resolution
## What changes were proposed in this pull request?

These are no longer needed after https://issues.apache.org/jira/browse/SPARK-17183

cc cloud-fan

## How was this patch tested?

Existing parquet and orc tests.

Author: Eric Liang <ekl@databricks.com>

Closes #15799 from ericl/sc-4929.
2016-11-09 15:00:46 +08:00
Burak Yavuz 6f7ecb0f29 [SPARK-18342] Make rename failures fatal in HDFSBackedStateStore
## What changes were proposed in this pull request?

If the rename operation in the state store fails (`fs.rename` returns `false`), the StateStore should throw an exception and have the task retry. Currently if renames fail, nothing happens during execution immediately. However, you will observe that snapshot operations will fail, and then any attempt at recovery (executor failure / checkpoint recovery) also fails.

## How was this patch tested?

Unit test

Author: Burak Yavuz <brkyvz@gmail.com>

Closes #15804 from brkyvz/rename-state.
2016-11-08 15:08:09 -08:00
jiangxingbo 9c419698fe [SPARK-18191][CORE] Port RDD API to use commit protocol
## What changes were proposed in this pull request?

This PR port RDD API to use commit protocol, the changes made here:
1. Add new internal helper class that saves an RDD using a Hadoop OutputFormat named `SparkNewHadoopWriter`, it's similar with `SparkHadoopWriter` but uses commit protocol. This class supports the newer `mapreduce` API, instead of the old `mapred` API which is supported by `SparkHadoopWriter`;
2. Rewrite `PairRDDFunctions.saveAsNewAPIHadoopDataset` function, so it uses commit protocol now.

## How was this patch tested?
Exsiting test cases.

Author: jiangxingbo <jiangxb1987@gmail.com>

Closes #15769 from jiangxb1987/rdd-commit.
2016-11-08 09:41:01 -08:00
Wenchen Fan 73feaa30eb [SPARK-18346][SQL] TRUNCATE TABLE should fail if no partition is matched for the given non-partial partition spec
## What changes were proposed in this pull request?

a follow up of https://github.com/apache/spark/pull/15688

## How was this patch tested?

updated test in `DDLSuite`

Author: Wenchen Fan <wenchen@databricks.com>

Closes #15805 from cloud-fan/truncate.
2016-11-08 22:28:29 +08:00
gatorsmile 1da64e1fa0 [SPARK-18217][SQL] Disallow creating permanent views based on temporary views or UDFs
### What changes were proposed in this pull request?
Based on the discussion in [SPARK-18209](https://issues.apache.org/jira/browse/SPARK-18209). It doesn't really make sense to create permanent views based on temporary views or temporary UDFs.

To disallow the supports and issue the exceptions, this PR needs to detect whether a temporary view/UDF is being used when defining a permanent view. Basically, this PR can be split to two sub-tasks:

**Task 1:** detecting a temporary view from the query plan of view definition.
When finding an unresolved temporary view, Analyzer replaces it by a `SubqueryAlias` with the corresponding logical plan, which is stored in an in-memory HashMap. After replacement, it is impossible to detect whether the `SubqueryAlias` is added/generated from a temporary view. Thus, to detect the usage of a temporary view in view definition, this PR traverses the unresolved logical plan and uses the name of an `UnresolvedRelation` to detect whether it is a (global) temporary view.

**Task 2:** detecting a temporary UDF from the query plan of view definition.
Detecting usage of a temporary UDF in view definition is not straightfoward.

First, in the analyzed plan, we are having different forms to represent the functions. More importantly, some classes (e.g., `HiveGenericUDF`) are not accessible from `CreateViewCommand`, which is part of  `sql/core`. Thus, we used the unanalyzed plan `child` of `CreateViewCommand` to detect the usage of a temporary UDF. Because the plan has already been successfully analyzed, we can assume the functions have been defined/registered.

Second, in Spark, the functions have four forms: Spark built-in functions, built-in hash functions, permanent UDFs and temporary UDFs. We do not have any direct way to determine whether a function is temporary or not. Thus, we introduced a function `isTemporaryFunction` in `SessionCatalog`. This function contains the detailed logics to determine whether a function is temporary or not.

### How was this patch tested?
Added test cases.

Author: gatorsmile <gatorsmile@gmail.com>

Closes #15764 from gatorsmile/blockTempFromPermViewCreation.
2016-11-07 18:34:21 -08:00