Commit graph

6730 commits

Author SHA1 Message Date
Tathagata Das 2c2a86b5d5 [SPARK-24453][SS] Fix error recovering from the failure in a no-data batch
## What changes were proposed in this pull request?

The error occurs when we are recovering from a failure in a no-data batch (say X) that has been planned (i.e. written to offset log) but not executed (i.e. not written to commit log). Upon recovery the following sequence of events happen.

1. `MicroBatchExecution.populateStartOffsets` sets `currentBatchId` to X. Since there was no data in the batch, the `availableOffsets` is same as `committedOffsets`, so `isNewDataAvailable` is `false`.
2. When `MicroBatchExecution.constructNextBatch` is called, ideally it should immediately return true because the next batch has already been constructed. However, the check of whether the batch has been constructed was `if (isNewDataAvailable) return true`. Since the planned batch is a no-data batch, it escaped this check and proceeded to plan the same batch X *once again*.

The solution is to have an explicit flag that signifies whether a batch has already been constructed or not. `populateStartOffsets` is going to set the flag appropriately.

## How was this patch tested?

new unit test

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #21491 from tdas/SPARK-24453.
2018-06-05 01:08:55 -07:00
Yuanjian Li dbb4d83829 [SPARK-24215][PYSPARK] Implement _repr_html_ for dataframes in PySpark
## What changes were proposed in this pull request?

Implement `_repr_html_` for PySpark while in notebook and add config named "spark.sql.repl.eagerEval.enabled" to control this.

The dev list thread for context: http://apache-spark-developers-list.1001551.n3.nabble.com/eager-execution-and-debuggability-td23928.html

## How was this patch tested?

New ut in DataFrameSuite and manual test in jupyter. Some screenshot below.

**After:**
![image](https://user-images.githubusercontent.com/4833765/40268422-8db5bef0-5b9f-11e8-80f1-04bc654a4f2c.png)

**Before:**
![image](https://user-images.githubusercontent.com/4833765/40268431-9f92c1b8-5b9f-11e8-9db9-0611f0940b26.png)

Author: Yuanjian Li <xyliyuanjian@gmail.com>

Closes #21370 from xuanyuanking/SPARK-24215.
2018-06-05 08:23:08 +07:00
aokolnychyi 7297ae04d8 [SPARK-21896][SQL] Fix StackOverflow caused by window functions inside aggregate functions
## What changes were proposed in this pull request?

This PR explicitly prohibits window functions inside aggregates. Currently, this will cause StackOverflow during analysis. See PR #19193 for previous discussion.

## How was this patch tested?

This PR comes with a dedicated unit test.

Author: aokolnychyi <anton.okolnychyi@sap.com>

Closes #21473 from aokolnychyi/fix-stackoverflow-window-funcs.
2018-06-04 13:28:16 -07:00
Yuming Wang 0be5aa2746 [SPARK-23903][SQL] Add support for date extract
## What changes were proposed in this pull request?

Add support for date `extract` function:
```sql
spark-sql> SELECT EXTRACT(YEAR FROM TIMESTAMP '2000-12-16 12:21:13');
2000
```
Supported field same as [Hive](https://github.com/apache/hive/blob/rel/release-2.3.3/ql/src/java/org/apache/hadoop/hive/ql/parse/IdentifiersParser.g#L308-L316): `YEAR`, `QUARTER`, `MONTH`, `WEEK`, `DAY`, `DAYOFWEEK`, `HOUR`, `MINUTE`, `SECOND`.

## How was this patch tested?

unit tests

Author: Yuming Wang <yumwang@ebay.com>

Closes #21479 from wangyum/SPARK-23903.
2018-06-04 10:16:13 -07:00
Maxim Gekk 1d9338bb10 [SPARK-23786][SQL] Checking column names of csv headers
## What changes were proposed in this pull request?

Currently column names of headers in CSV files are not checked against provided schema of CSV data. It could cause errors like showed in the [SPARK-23786](https://issues.apache.org/jira/browse/SPARK-23786) and https://github.com/apache/spark/pull/20894#issuecomment-375957777. I introduced new CSV option - `enforceSchema`. If it is enabled (by default `true`), Spark forcibly applies provided or inferred schema to CSV files. In that case, CSV headers are ignored and not checked against the schema. If `enforceSchema` is set to `false`, additional checks can be performed. For example, if column in CSV header and in the schema have different ordering, the following exception is thrown:

```
java.lang.IllegalArgumentException: CSV file header does not contain the expected fields
 Header: depth, temperature
 Schema: temperature, depth
CSV file: marina.csv
```

## How was this patch tested?

The changes were tested by existing tests of CSVSuite and by 2 new tests.

Author: Maxim Gekk <maxim.gekk@databricks.com>
Author: Maxim Gekk <max.gekk@gmail.com>

Closes #20894 from MaxGekk/check-column-names.
2018-06-03 22:02:21 -07:00
Wenchen Fan 416cd1fd96 [SPARK-24369][SQL] Correct handling for multiple distinct aggregations having the same argument set
## What changes were proposed in this pull request?

bring back https://github.com/apache/spark/pull/21443

This is a different approach: just change the check to count distinct columns with `toSet`

## How was this patch tested?

a new test to verify the planner behavior.

Author: Wenchen Fan <wenchen@databricks.com>
Author: Takeshi Yamamuro <yamamuro@apache.org>

Closes #21487 from cloud-fan/back.
2018-06-03 21:57:42 -07:00
Xiao Li d2c3de7efc Revert "[SPARK-24369][SQL] Correct handling for multiple distinct aggregations having the same argument set"
This reverts commit 1e46f92f95.
2018-06-01 11:51:10 -07:00
Huang Tengfei 6039b13230 [SPARK-24351][SS] offsetLog/commitLog purge thresholdBatchId should be computed with current committed epoch but not currentBatchId in CP mode
## What changes were proposed in this pull request?
Compute the thresholdBatchId to purge metadata based on current committed epoch instead of currentBatchId in CP mode to avoid cleaning all the committed metadata in some case as described in the jira [SPARK-24351](https://issues.apache.org/jira/browse/SPARK-24351).

## How was this patch tested?
Add new unit test.

Author: Huang Tengfei <tengfei.h@gmail.com>

Closes #21400 from ivoson/branch-cp-meta.
2018-06-01 10:47:53 -07:00
Huaxin Gao 98909c398d [SPARK-23920][SQL] add array_remove to remove all elements that equal element from array
## What changes were proposed in this pull request?

add array_remove to remove all elements that equal element from array

## How was this patch tested?

add unit tests

Author: Huaxin Gao <huaxing@us.ibm.com>

Closes #21069 from huaxingao/spark-23920.
2018-05-31 22:04:26 -07:00
Gengliang Wang cbaa729132 [SPARK-24330][SQL] Refactor ExecuteWriteTask and Use while in writing files
## What changes were proposed in this pull request?
1. Refactor ExecuteWriteTask in FileFormatWriter to reduce common logic and improve readability.
After the change, callers only need to call `commit()` or `abort` at the end of task.
Also there is less code in `SingleDirectoryWriteTask` and `DynamicPartitionWriteTask`.
Definitions of related classes are moved to a new file, and `ExecuteWriteTask` is renamed to `FileFormatDataWriter`.

2. As per code style guide: https://github.com/databricks/scala-style-guide#traversal-and-zipwithindex , we avoid using `for` for looping in [FileFormatWriter](https://github.com/apache/spark/pull/21381/files#diff-3b69eb0963b68c65cfe8075f8a42e850L536) , or `foreach` in [WriteToDataSourceV2Exec](https://github.com/apache/spark/pull/21381/files#diff-6fbe10db766049a395bae2e785e9d56eL119).
In such critical code path, using `while` is good for performance.

## How was this patch tested?
Existing unit test.
I tried the microbenchmark in https://github.com/apache/spark/pull/21409

| Workload | Before changes(Best/Avg Time(ms)) | After changes(Best/Avg Time(ms)) |
| --- | --- | -- |
|Output Single Int Column|    2018 / 2043   |    2096 / 2236 |
|Output Single Double Column| 1978 / 2043 | 2013 / 2018 |
|Output Int and String Column| 6332 / 6706 | 6162 / 6298 |
|Output Partitions| 4458 / 5094 |  3792 / 4008  |
|Output Buckets|           5695 / 6102 |    5120 / 5154 |

Also a microbenchmark on my laptop for general comparison among while/foreach/for :
```
class Writer {
  var sum = 0L
  def write(l: Long): Unit = sum += l
}

def testWhile(iterator: Iterator[Long]): Long = {
  val w = new Writer
  while (iterator.hasNext) {
    w.write(iterator.next())
  }
  w.sum
}

def testForeach(iterator: Iterator[Long]): Long = {
  val w = new Writer
  iterator.foreach(w.write)
  w.sum
}

def testFor(iterator: Iterator[Long]): Long = {
  val w = new Writer
  for (x <- iterator) {
    w.write(x)
  }
  w.sum
}

val data = 0L to 100000000L
val start = System.nanoTime
(0 to 10).foreach(_ => testWhile(data.iterator))
println("benchmark while: " + (System.nanoTime - start)/1000000)

val start2 = System.nanoTime
(0 to 10).foreach(_ => testForeach(data.iterator))
println("benchmark foreach: " + (System.nanoTime - start2)/1000000)

val start3 = System.nanoTime
(0 to 10).foreach(_ => testForeach(data.iterator))
println("benchmark for: " + (System.nanoTime - start3)/1000000)
```
Benchmark result:
`while`: 15401 ms
`foreach`: 43034 ms
`for`: 41279 ms

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21381 from gengliangwang/refactorExecuteWriteTask.
2018-06-01 10:01:15 +08:00
Yuming Wang cc976f6cb8 [SPARK-23900][SQL] format_number support user specifed format as argument
## What changes were proposed in this pull request?

`format_number` support user specifed format as argument. For example:
```sql
spark-sql> SELECT format_number(12332.123456, '##################.###');
12332.123
```

## How was this patch tested?

unit test

Author: Yuming Wang <yumwang@ebay.com>

Closes #21010 from wangyum/SPARK-23900.
2018-05-31 11:38:23 -07:00
Marco Gaido 24ef7fbfa9 [SPARK-24276][SQL] Order of literals in IN should not affect semantic equality
## What changes were proposed in this pull request?

When two `In` operators are created with the same list of values, but different order, we are considering them as semantically different. This is wrong, since they have the same semantic meaning.

The PR adds a canonicalization rule which orders the literals in the `In` operator so the semantic equality works properly.

## How was this patch tested?

added UT

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21331 from mgaido91/SPARK-24276.
2018-05-30 15:31:40 -07:00
Marco Gaido 1b36f14889 [SPARK-23901][SQL] Add masking functions
## What changes were proposed in this pull request?

The PR adds the masking function as they are described in Hive's documentation: https://cwiki.apache.org/confluence/display/Hive/LanguageManual+UDF#LanguageManualUDF-DataMaskingFunctions.
This means that only `string`s are accepted as parameter for the masking functions.

## How was this patch tested?

added UTs

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21246 from mgaido91/SPARK-23901.
2018-05-30 11:18:04 -07:00
Takeshi Yamamuro 1e46f92f95 [SPARK-24369][SQL] Correct handling for multiple distinct aggregations having the same argument set
## What changes were proposed in this pull request?
This pr fixed an issue when having multiple distinct aggregations having the same argument set, e.g.,
```
scala>: paste
val df = sql(
  s"""SELECT corr(DISTINCT x, y), corr(DISTINCT y, x), count(*)
     | FROM (VALUES (1, 1), (2, 2), (2, 2)) t(x, y)
   """.stripMargin)

java.lang.RuntimeException
You hit a query analyzer bug. Please report your query to Spark user mailing list.
```
The root cause is that `RewriteDistinctAggregates` can't detect multiple distinct aggregations if they have the same argument set. This pr modified code so that `RewriteDistinctAggregates` could count the number of aggregate expressions with `isDistinct=true`.

## How was this patch tested?
Added tests in `DataFrameAggregateSuite`.

Author: Takeshi Yamamuro <yamamuro@apache.org>

Closes #21443 from maropu/SPARK-24369.
2018-05-31 00:23:25 +08:00
Gengliang Wang f48938800e [SPARK-24365][SQL] Add Data Source write benchmark
## What changes were proposed in this pull request?

Add Data Source write benchmark. So that it would be easier to measure the writer performance.

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21409 from gengliangwang/parquetWriteBenchmark.
2018-05-30 09:32:33 +08:00
DB Tsai 900bc1f7dc
[SPARK-24371][SQL] Added isInCollection in DataFrame API for Scala and Java.
## What changes were proposed in this pull request?

Implemented **`isInCollection `** in DataFrame API for both Scala and Java, so users can do

```scala
val profileDF = Seq(
  Some(1), Some(2), Some(3), Some(4),
  Some(5), Some(6), Some(7), None
).toDF("profileID")

val validUsers: Seq[Any] = Seq(6, 7.toShort, 8L, "3")

val result = profileDF.withColumn("isValid", $"profileID". isInCollection(validUsers))

result.show(10)
"""
+---------+-------+
|profileID|isValid|
+---------+-------+
|        1|  false|
|        2|  false|
|        3|   true|
|        4|  false|
|        5|  false|
|        6|   true|
|        7|   true|
|     null|   null|
+---------+-------+
 """.stripMargin
```
## How was this patch tested?

Several unit tests are added.

Author: DB Tsai <d_tsai@apple.com>

Closes #21416 from dbtsai/optimize-set.
2018-05-29 10:22:18 -07:00
Xiao Li 23db600c95 [SPARK-24250][SQL][FOLLOW-UP] support accessing SQLConf inside tasks
## What changes were proposed in this pull request?
We should not stop users from calling `getActiveSession` and `getDefaultSession` in executors. To not break the existing behaviors, we should simply return None.

## How was this patch tested?
N/A

Author: Xiao Li <gatorsmile@gmail.com>

Closes #21436 from gatorsmile/followUpSPARK-24250.
2018-05-28 23:23:22 -07:00
Dongjoon Hyun b31b587cd0 [SPARK-19613][SS][TEST] Random.nextString is not safe for directory namePrefix
## What changes were proposed in this pull request?

`Random.nextString` is good for generating random string data, but it's not proper for directory name prefix in `Utils.createDirectory(tempDir, Random.nextString(10))`. This PR uses more safe directory namePrefix.

```scala
scala> scala.util.Random.nextString(10)
res0: String = 馨쭔ᎰႻ穚䃈兩㻞藑並
```

```scala
StateStoreRDDSuite:
- versioning and immutability
- recovering from files
- usage with iterators - only gets and only puts
- preferred locations using StateStoreCoordinator *** FAILED ***
  java.io.IOException: Failed to create a temp directory (under /.../spark/sql/core/target/tmp/StateStoreRDDSuite8712796397908632676) after 10 attempts!
  at org.apache.spark.util.Utils$.createDirectory(Utils.scala:295)
  at org.apache.spark.sql.execution.streaming.state.StateStoreRDDSuite$$anonfun$13$$anonfun$apply$6.apply(StateStoreRDDSuite.scala:152)
  at org.apache.spark.sql.execution.streaming.state.StateStoreRDDSuite$$anonfun$13$$anonfun$apply$6.apply(StateStoreRDDSuite.scala:149)
  at org.apache.spark.sql.catalyst.util.package$.quietly(package.scala:42)
  at org.apache.spark.sql.execution.streaming.state.StateStoreRDDSuite$$anonfun$13.apply(StateStoreRDDSuite.scala:149)
  at org.apache.spark.sql.execution.streaming.state.StateStoreRDDSuite$$anonfun$13.apply(StateStoreRDDSuite.scala:149)
...
- distributed test *** FAILED ***
  java.io.IOException: Failed to create a temp directory (under /.../spark/sql/core/target/tmp/StateStoreRDDSuite8712796397908632676) after 10 attempts!
  at org.apache.spark.util.Utils$.createDirectory(Utils.scala:295)
```

## How was this patch tested?

Pass the existing tests.StateStoreRDDSuite:

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #21446 from dongjoon-hyun/SPARK-19613.
2018-05-29 10:35:30 +08:00
Marco Gaido de01a8d50c [SPARK-24373][SQL] Add AnalysisBarrier to RelationalGroupedDataset's and KeyValueGroupedDataset's child
## What changes were proposed in this pull request?

When we create a `RelationalGroupedDataset` or a `KeyValueGroupedDataset` we set its child to the `logicalPlan` of the `DataFrame` we need to aggregate. Since the `logicalPlan` is already analyzed, we should not analyze it again. But this happens when the new plan of the aggregate is analyzed.

The current behavior in most of the cases is likely to produce no harm, but in other cases re-analyzing an analyzed plan can change it, since the analysis is not idempotent. This can cause issues like the one described in the JIRA (missing to find a cached plan).

The PR adds an `AnalysisBarrier` to the `logicalPlan` which is used as child of `RelationalGroupedDataset` or a `KeyValueGroupedDataset`.

## How was this patch tested?

added UT

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21432 from mgaido91/SPARK-24373.
2018-05-28 12:09:44 +08:00
Li Jin 672209f290 [SPARK-24334] Fix race condition in ArrowPythonRunner causes unclean shutdown of Arrow memory allocator
## What changes were proposed in this pull request?

There is a race condition of closing Arrow VectorSchemaRoot and Allocator in the writer thread of ArrowPythonRunner.

The race results in memory leak exception when closing the allocator. This patch removes the closing routine from the TaskCompletionListener and make the writer thread responsible for cleaning up the Arrow memory.

This issue be reproduced by this test:

```
def test_memory_leak(self):
    from pyspark.sql.functions import pandas_udf, col, PandasUDFType, array, lit, explode

   # Have all data in a single executor thread so it can trigger the race condition easier
    with self.sql_conf({'spark.sql.shuffle.partitions': 1}):
        df = self.spark.range(0, 1000)
        df = df.withColumn('id', array([lit(i) for i in range(0, 300)])) \
                   .withColumn('id', explode(col('id'))) \
                   .withColumn('v',  array([lit(i) for i in range(0, 1000)]))

       pandas_udf(df.schema, PandasUDFType.GROUPED_MAP)
       def foo(pdf):
           xxx
           return pdf

       result = df.groupby('id').apply(foo)

       with QuietTest(self.sc):
           with self.assertRaises(py4j.protocol.Py4JJavaError) as context:
               result.count()
           self.assertTrue('Memory leaked' not in str(context.exception))
```

Note: Because of the race condition, the test case cannot reproduce the issue reliably so it's not added to test cases.

## How was this patch tested?

Because of the race condition, the bug cannot be unit test easily. So far it has only happens on large amount of data. This is currently tested manually.

Author: Li Jin <ice.xelloss@gmail.com>

Closes #21397 from icexelloss/SPARK-24334-arrow-memory-leak.
2018-05-28 10:50:17 +08:00
Miles Yucht d440699192 [SPARK-24381][TESTING] Add unit tests for NOT IN subquery around null values
## What changes were proposed in this pull request?
This PR adds several unit tests along the `cols NOT IN (subquery)` pathway. There are a scattering of tests here and there which cover this codepath, but there doesn't seem to be a unified unit test of the correctness of null-aware anti joins anywhere. I have also added a brief explanation of how this expression behaves in SubquerySuite. Lastly, I made some clarifying changes in the NOT IN pathway in RewritePredicateSubquery.

## How was this patch tested?
Added unit tests! There should be no behavioral change in this PR.

Author: Miles Yucht <miles@databricks.com>

Closes #21425 from mgyucht/spark-24381.
2018-05-26 20:42:23 -07:00
Maxim Gekk 1b1528a504 [SPARK-24366][SQL] Improving of error messages for type converting
## What changes were proposed in this pull request?

Currently, users are getting the following error messages on type conversions:

```
scala.MatchError: test (of class java.lang.String)
```

The message doesn't give any clues to the users where in the schema the error happened. In this PR, I would like to improve the error message like:

```
The value (test) of the type (java.lang.String) cannot be converted to struct<f1:int>
```

## How was this patch tested?

Added tests for converting of wrong values to `struct`, `map`, `array`, `string` and `decimal`.

Author: Maxim Gekk <maxim.gekk@databricks.com>

Closes #21410 from MaxGekk/type-conv-error.
2018-05-25 15:42:46 -07:00
Maxim Gekk 64fad0b519 [SPARK-24244][SPARK-24368][SQL] Passing only required columns to the CSV parser
## What changes were proposed in this pull request?

uniVocity parser allows to specify only required column names or indexes for [parsing](https://www.univocity.com/pages/parsers-tutorial) like:

```
// Here we select only the columns by their indexes.
// The parser just skips the values in other columns
parserSettings.selectIndexes(4, 0, 1);
CsvParser parser = new CsvParser(parserSettings);
```
In this PR, I propose to extract indexes from required schema and pass them into the CSV parser. Benchmarks show the following improvements in parsing of 1000 columns:

```
Select 100 columns out of 1000: x1.76
Select 1 column out of 1000: x2
```

**Note**: Comparing to current implementation, the changes can return different result for malformed rows in the `DROPMALFORMED` and `FAILFAST` modes if only subset of all columns is requested. To have previous behavior, set `spark.sql.csv.parser.columnPruning.enabled` to `false`.

## How was this patch tested?

It was tested by new test which selects 3 columns out of 15, by existing tests and by new benchmarks.

Author: Maxim Gekk <maxim.gekk@databricks.com>
Author: Maxim Gekk <max.gekk@gmail.com>

Closes #21415 from MaxGekk/csv-column-pruning2.
2018-05-24 21:38:04 -07:00
Gengliang Wang 3b20b34ab7 [SPARK-24367][SQL] Parquet: use JOB_SUMMARY_LEVEL instead of deprecated flag ENABLE_JOB_SUMMARY
## What changes were proposed in this pull request?

In current parquet version,the conf ENABLE_JOB_SUMMARY is deprecated.

When writing to Parquet files, the warning message
```WARN org.apache.parquet.hadoop.ParquetOutputFormat: Setting parquet.enable.summary-metadata is deprecated, please use parquet.summary.metadata.level```
keeps showing up.

From https://github.com/apache/parquet-mr/blame/master/parquet-hadoop/src/main/java/org/apache/parquet/hadoop/ParquetOutputFormat.java#L164 we can see that we should use JOB_SUMMARY_LEVEL.

## How was this patch tested?

Unit test

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21411 from gengliangwang/summaryLevel.
2018-05-25 11:16:35 +08:00
Jose Torres 0fd68cb727 [SPARK-24234][SS] Support multiple row writers in continuous processing shuffle reader.
## What changes were proposed in this pull request?

https://docs.google.com/document/d/1IL4kJoKrZWeyIhklKUJqsW-yEN7V7aL05MmM65AYOfE/edit#heading=h.8t3ci57f7uii

Support multiple different row writers in continuous processing shuffle reader.

Note that having multiple read-side buffers ended up being the natural way to do this. Otherwise it's hard to express the constraint of sending an epoch marker only when all writers have sent one.

## How was this patch tested?

new unit tests

Author: Jose Torres <torres.joseph.f+github@gmail.com>

Closes #21385 from jose-torres/multipleWrite.
2018-05-24 17:08:52 -07:00
Yuming Wang 0d89943449 [SPARK-24378][SQL] Fix date_trunc function incorrect examples
## What changes were proposed in this pull request?

Fix `date_trunc` function incorrect examples.

## How was this patch tested?

N/A

Author: Yuming Wang <yumwang@ebay.com>

Closes #21423 from wangyum/SPARK-24378.
2018-05-24 23:38:50 +08:00
Maxim Gekk 13bedc05c2 [SPARK-24329][SQL] Test for skipping multi-space lines
## What changes were proposed in this pull request?

The PR is a continue of https://github.com/apache/spark/pull/21380 . It checks cases that are handled by the code:
e3de6ab30d/sql/core/src/main/scala/org/apache/spark/sql/execution/datasources/csv/UnivocityParser.scala (L303-L304)

Basically the code skips lines with one or many whitespaces, and lines with comments (see [filterCommentAndEmpty](e3de6ab30d/sql/core/src/main/scala/org/apache/spark/sql/execution/datasources/csv/CSVUtils.scala (L47)))

```scala
   iter.filter { line =>
      line.trim.nonEmpty && !line.startsWith(options.comment.toString)
    }
```

Closes #21380

## How was this patch tested?

Added a test for the case described above.

Author: Maxim Gekk <maxim.gekk@databricks.com>
Author: Maxim Gekk <max.gekk@gmail.com>

Closes #21394 from MaxGekk/test-for-multi-space-lines.
2018-05-24 22:18:58 +08:00
Ryan Blue 3469f5c989 [SPARK-24230][SQL] Fix SpecificParquetRecordReaderBase with dictionary filters.
## What changes were proposed in this pull request?

I missed this commit when preparing #21070.

When Parquet is able to filter blocks with dictionary filtering, the expected total value count to be too high in Spark, leading to an error when there were fewer than expected row groups to process. Spark should get the row groups from Parquet to pick up new filter schemes in Parquet like dictionary filtering.

## How was this patch tested?

Using in production at Netflix. Added test case for dictionary-filtered blocks.

Author: Ryan Blue <blue@apache.org>

Closes #21295 from rdblue/SPARK-24230-fix-parquet-block-tracking.
2018-05-24 20:55:26 +08:00
hyukjinkwon 8a545822d0 [SPARK-24364][SS] Prevent InMemoryFileIndex from failing if file path doesn't exist
## What changes were proposed in this pull request?

This PR proposes to follow up https://github.com/apache/spark/pull/15153 and complete SPARK-17599.

`FileSystem` operation (`fs.getFileBlockLocations`) can still fail if the file path does not exist. For example see the exception message below:

```
Error occurred while processing: File does not exist: /rel/00171151/input/PJ/part-00136-b6403bac-a240-44f8-a792-fc2e174682b7-c000.csv
...
java.io.FileNotFoundException: File does not exist: /rel/00171151/input/PJ/part-00136-b6403bac-a240-44f8-a792-fc2e174682b7-c000.csv
...
org.apache.hadoop.hdfs.DistributedFileSystem.getFileBlockLocations(DistributedFileSystem.java:249)
	at org.apache.hadoop.hdfs.DistributedFileSystem.getFileBlockLocations(DistributedFileSystem.java:229)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex$$anonfun$org$apache$spark$sql$execution$datasources$InMemoryFileIndex$$listLeafFiles$3.apply(InMemoryFileIndex.scala:314)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex$$anonfun$org$apache$spark$sql$execution$datasources$InMemoryFileIndex$$listLeafFiles$3.apply(InMemoryFileIndex.scala:297)
	at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
	at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
	at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
	at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:186)
	at scala.collection.TraversableLike$class.map(TraversableLike.scala:234)
	at scala.collection.mutable.ArrayOps$ofRef.map(ArrayOps.scala:186)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex$.org$apache$spark$sql$execution$datasources$InMemoryFileIndex$$listLeafFiles(InMemoryFileIndex.scala:297)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex$$anonfun$org$apache$spark$sql$execution$datasources$InMemoryFileIndex$$bulkListLeafFiles$1.apply(InMemoryFileIndex.scala:174)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex$$anonfun$org$apache$spark$sql$execution$datasources$InMemoryFileIndex$$bulkListLeafFiles$1.apply(InMemoryFileIndex.scala:173)
	at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
	at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
	at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
	at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
	at scala.collection.TraversableLike$class.map(TraversableLike.scala:234)
	at scala.collection.AbstractTraversable.map(Traversable.scala:104)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex$.org$apache$spark$sql$execution$datasources$InMemoryFileIndex$$bulkListLeafFiles(InMemoryFileIndex.scala:173)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex.listLeafFiles(InMemoryFileIndex.scala:126)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex.refresh0(InMemoryFileIndex.scala:91)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex.<init>(InMemoryFileIndex.scala:67)
	at org.apache.spark.sql.execution.datasources.DataSource.tempFileIndex$lzycompute$1(DataSource.scala:161)
	at org.apache.spark.sql.execution.datasources.DataSource.org$apache$spark$sql$execution$datasources$DataSource$$tempFileIndex$1(DataSource.scala:152)
	at org.apache.spark.sql.execution.datasources.DataSource.getOrInferFileFormatSchema(DataSource.scala:166)
	at org.apache.spark.sql.execution.datasources.DataSource.sourceSchema(DataSource.scala:261)
	at org.apache.spark.sql.execution.datasources.DataSource.sourceInfo$lzycompute(DataSource.scala:94)
	at org.apache.spark.sql.execution.datasources.DataSource.sourceInfo(DataSource.scala:94)
	at org.apache.spark.sql.execution.streaming.StreamingRelation$.apply(StreamingRelation.scala:33)
	at org.apache.spark.sql.streaming.DataStreamReader.load(DataStreamReader.scala:196)
	at org.apache.spark.sql.streaming.DataStreamReader.load(DataStreamReader.scala:206)
	at com.hwx.StreamTest$.main(StreamTest.scala:97)
	at com.hwx.StreamTest.main(StreamTest.scala)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.apache.spark.deploy.JavaMainApplication.start(SparkApplication.scala:52)
	at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:906)
	at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:197)
	at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:227)
	at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:136)
	at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: org.apache.hadoop.ipc.RemoteException(java.io.FileNotFoundException): File does not exist: /rel/00171151/input/PJ/part-00136-b6403bac-a240-44f8-a792-fc2e174682b7-c000.csv
...
```

So, it fixes it to make a warning instead.

## How was this patch tested?

It's hard to write a test. Manually tested multiple times.

Author: hyukjinkwon <gurwls223@apache.org>

Closes #21408 from HyukjinKwon/missing-files.
2018-05-24 13:21:02 +08:00
Dongjoon Hyun 486ecc680e [SPARK-24322][BUILD] Upgrade Apache ORC to 1.4.4
## What changes were proposed in this pull request?

ORC 1.4.4 includes [nine fixes](https://issues.apache.org/jira/issues/?filter=12342568&jql=project%20%3D%20ORC%20AND%20resolution%20%3D%20Fixed%20AND%20fixVersion%20%3D%201.4.4). One of the issues is about `Timestamp` bug (ORC-306) which occurs when `native` ORC vectorized reader reads ORC column vector's sub-vector `times` and `nanos`. ORC-306 fixes this according to the [original definition](https://github.com/apache/hive/blob/master/storage-api/src/java/org/apache/hadoop/hive/ql/exec/vector/TimestampColumnVector.java#L45-L46) and this PR includes the updated interpretation on ORC column vectors. Note that `hive` ORC reader and ORC MR reader is not affected.

```scala
scala> spark.version
res0: String = 2.3.0
scala> spark.sql("set spark.sql.orc.impl=native")
scala> Seq(java.sql.Timestamp.valueOf("1900-05-05 12:34:56.000789")).toDF().write.orc("/tmp/orc")
scala> spark.read.orc("/tmp/orc").show(false)
+--------------------------+
|value                     |
+--------------------------+
|1900-05-05 12:34:55.000789|
+--------------------------+
```

This PR aims to update Apache Spark to use it.

**FULL LIST**

ID | TITLE
-- | --
ORC-281 | Fix compiler warnings from clang 5.0
ORC-301 | `extractFileTail` should open a file in `try` statement
ORC-304 | Fix TestRecordReaderImpl to not fail with new storage-api
ORC-306 | Fix incorrect workaround for bug in java.sql.Timestamp
ORC-324 | Add support for ARM and PPC arch
ORC-330 | Remove unnecessary Hive artifacts from root pom
ORC-332 | Add syntax version to orc_proto.proto
ORC-336 | Remove avro and parquet dependency management entries
ORC-360 | Implement error checking on subtype fields in Java

## How was this patch tested?

Pass the Jenkins.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #21372 from dongjoon-hyun/SPARK_ORC144.
2018-05-24 11:34:13 +08:00
sychen 888340151f [SPARK-24257][SQL] LongToUnsafeRowMap calculate the new size may be wrong
LongToUnsafeRowMap has a mistake when growing its page array: it blindly grows to `oldSize * 2`, while the new record may be larger than `oldSize * 2`. Then we may have a malformed UnsafeRow when querying this map, whose actual data is smaller than its declared size, and the data is corrupted.

Author: sychen <sychen@ctrip.com>

Closes #21311 from cxzl25/fix_LongToUnsafeRowMap_page_size.
2018-05-24 11:18:07 +08:00
Vayda, Oleksandr: IT (PRG) 230f144197 [SPARK-24350][SQL] Fixes ClassCastException in the "array_position" function
## What changes were proposed in this pull request?

### Fixes `ClassCastException` in the `array_position` function - [SPARK-24350](https://issues.apache.org/jira/browse/SPARK-24350)
When calling `array_position` function with a wrong type of the 1st argument an `AnalysisException` should be thrown instead of `ClassCastException`

Example:

```sql
select array_position('foo', 'bar')
```

```
java.lang.ClassCastException: org.apache.spark.sql.types.StringType$ cannot be cast to org.apache.spark.sql.types.ArrayType
	at org.apache.spark.sql.catalyst.expressions.ArrayPosition.inputTypes(collectionOperations.scala:1398)
	at org.apache.spark.sql.catalyst.expressions.ExpectsInputTypes$class.checkInputDataTypes(ExpectsInputTypes.scala:44)
	at org.apache.spark.sql.catalyst.expressions.ArrayPosition.checkInputDataTypes(collectionOperations.scala:1401)
	at org.apache.spark.sql.catalyst.expressions.Expression.resolved$lzycompute(Expression.scala:168)
	at org.apache.spark.sql.catalyst.expressions.Expression.resolved(Expression.scala:168)
	at org.apache.spark.sql.catalyst.analysis.Analyzer$ResolveAliases$$anonfun$org$apache$spark$sql$catalyst$analysis$Analyzer$ResolveAliases$$assignAliases$1$$anonfun$apply$3.applyOrElse(Analyzer.scala:256)
	at org.apache.spark.sql.catalyst.analysis.Analyzer$ResolveAliases$$anonfun$org$apache$spark$sql$catalyst$analysis$Analyzer$ResolveAliases$$assignAliases$1$$anonfun$apply$3.applyOrElse(Analyzer.scala:252)
	at org.apache.spark.sql.catalyst.trees.TreeNode$$anonfun$transformUp$1.apply(TreeNode.scala:289)
	at org.apache.spark.sql.catalyst.trees.TreeNode$$anonfun$transformUp$1.apply(TreeNode.scala:289)
	at org.apache.spark.sql.catalyst.trees.CurrentOrigin$.withOrigin(TreeNode.scala:70)
	at org.apache.spark.sql.catalyst.trees.TreeNode.transformUp(TreeNode.scala:288)
```

## How was this patch tested?

unit test

Author: Vayda, Oleksandr: IT (PRG) <Oleksandr.Vayda@barclayscapital.com>

Closes #21401 from wajda/SPARK-24350-array_position-error-fix.
2018-05-23 17:22:52 -07:00
Jose Torres f457933293 [SPARK-23416][SS] Add a specific stop method for ContinuousExecution.
## What changes were proposed in this pull request?

Add a specific stop method for ContinuousExecution. The previous StreamExecution.stop() method had a race condition as applied to continuous processing: if the cancellation was round-tripped to the driver too quickly, the generic SparkException it caused would be reported as the query death cause. We earlier decided that SparkException should not be added to the StreamExecution.isInterruptionException() whitelist, so we need to ensure this never happens instead.

## How was this patch tested?

Existing tests. I could consistently reproduce the previous flakiness by putting Thread.sleep(1000) between the first job cancellation and thread interruption in StreamExecution.stop().

Author: Jose Torres <torres.joseph.f+github@gmail.com>

Closes #21384 from jose-torres/fixKafka.
2018-05-23 17:21:29 -07:00
jinxing b7a036b75b [SPARK-24294] Throw SparkException when OOM in BroadcastExchangeExec
## What changes were proposed in this pull request?

When OutOfMemoryError thrown from BroadcastExchangeExec, scala.concurrent.Future will hit scala bug – https://github.com/scala/bug/issues/9554, and hang until future timeout:

We could wrap the OOM inside SparkException to resolve this issue.

## How was this patch tested?

Manually tested.

Author: jinxing <jinxing6042@126.com>

Closes #21342 from jinxing64/SPARK-24294.
2018-05-23 13:12:05 -07:00
Takeshi Yamamuro 84557bc9f8 [SPARK-24206][SQL] Improve DataSource read benchmark code
## What changes were proposed in this pull request?
This pr added benchmark code `DataSourceReadBenchmark` for `orc`, `paruqet`, `csv`, and `json` based on the existing `ParquetReadBenchmark` and `OrcReadBenchmark`.

## How was this patch tested?
N/A

Author: Takeshi Yamamuro <yamamuro@apache.org>

Closes #21266 from maropu/DataSourceReadBenchmark.
2018-05-23 13:02:32 -07:00
Xiao Li 5a5a868dc4 Revert "[SPARK-24244][SQL] Passing only required columns to the CSV parser"
This reverts commit 8086acc2f6.
2018-05-23 11:51:13 -07:00
Liang-Chi Hsieh a40ffc656d [SPARK-23711][SQL] Add fallback generator for UnsafeProjection
## What changes were proposed in this pull request?

Add fallback logic for `UnsafeProjection`. In production we can try to create unsafe projection using codegen implementation. Once any compile error happens, it fallbacks to interpreted implementation.

## How was this patch tested?

Added test.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #21106 from viirya/SPARK-23711.
2018-05-23 22:40:52 +08:00
Seth Fitzsimmons 00c13cfad7 Correct reference to Offset class
This is a documentation-only correction; `org.apache.spark.sql.sources.v2.reader.Offset` is actually `org.apache.spark.sql.sources.v2.reader.streaming.Offset`.

Author: Seth Fitzsimmons <seth@mojodna.net>

Closes #21387 from mojodna/patch-1.
2018-05-23 09:14:03 +08:00
Vayda, Oleksandr: IT (PRG) bc6ea614ad [SPARK-24348][SQL] "element_at" error fix
## What changes were proposed in this pull request?

### Fixes a `scala.MatchError` in the `element_at` operation - [SPARK-24348](https://issues.apache.org/jira/browse/SPARK-24348)

When calling `element_at` with a wrong first operand type an `AnalysisException` should be thrown instead of `scala.MatchError`

*Example:*
```sql
select element_at('foo', 1)
```

results in:
```
scala.MatchError: StringType (of class org.apache.spark.sql.types.StringType$)
	at org.apache.spark.sql.catalyst.expressions.ElementAt.inputTypes(collectionOperations.scala:1469)
	at org.apache.spark.sql.catalyst.expressions.ExpectsInputTypes$class.checkInputDataTypes(ExpectsInputTypes.scala:44)
	at org.apache.spark.sql.catalyst.expressions.ElementAt.checkInputDataTypes(collectionOperations.scala:1478)
	at org.apache.spark.sql.catalyst.expressions.Expression.resolved$lzycompute(Expression.scala:168)
	at org.apache.spark.sql.catalyst.expressions.Expression.resolved(Expression.scala:168)
	at org.apache.spark.sql.catalyst.analysis.Analyzer$ResolveAliases$$anonfun$org$apache$spark$sql$catalyst$analysis$Analyzer$ResolveAliases$$assignAliases$1$$anonfun$apply$3.applyOrElse(Analyzer.scala:256)
	at org.apache.spark.sql.catalyst.analysis.Analyzer$ResolveAliases$$anonfun$org$apache$spark$sql$catalyst$analysis$Analyzer$ResolveAliases$$assignAliases$1$$anonfun$apply$3.applyOrElse(Analyzer.scala:252)
	at org.apache.spark.sql.catalyst.trees.TreeNode$$anonfun$transformUp$1.apply(TreeNode.scala:289)
	at org.apache.spark.sql.catalyst.trees.TreeNode$$anonfun$transformUp$1.apply(TreeNode.scala:289)
	at org.apache.spark.sql.catalyst.trees.CurrentOrigin$.withOrigin(TreeNode.scala:70)
	at org.apache.spark.sql.catalyst.trees.TreeNode.transformUp(TreeNode.scala:288)
```

## How was this patch tested?

unit tests

Author: Vayda, Oleksandr: IT (PRG) <Oleksandr.Vayda@barclayscapital.com>

Closes #21395 from wajda/SPARK-24348-element_at-error-fix.
2018-05-22 13:01:07 -07:00
Liang-Chi Hsieh f9f055afa4 [SPARK-24121][SQL] Add API for handling expression code generation
## What changes were proposed in this pull request?

This patch tries to implement this [proposal](https://github.com/apache/spark/pull/19813#issuecomment-354045400) to add an API for handling expression code generation. It should allow us to manipulate how to generate codes for expressions.

In details, this adds an new abstraction `CodeBlock` to `JavaCode`. `CodeBlock` holds the code snippet and inputs for generating actual java code.

For example, in following java code:

```java
  int ${variable} = 1;
  boolean ${isNull} = ${CodeGenerator.defaultValue(BooleanType)};
```

`variable`, `isNull` are two `VariableValue` and `CodeGenerator.defaultValue(BooleanType)` is a string. They are all inputs to this code block and held by `CodeBlock` representing this code.

For codegen, we provide a specified string interpolator `code`, so you can define a code like this:
```scala
  val codeBlock =
    code"""
         |int ${variable} = 1;
         |boolean ${isNull} = ${CodeGenerator.defaultValue(BooleanType)};
        """.stripMargin
  // Generates actual java code.
  codeBlock.toString
```

Because those inputs are held separately in `CodeBlock` before generating code, we can safely manipulate them, e.g., replacing statements to aliased variables, etc..

## How was this patch tested?

Added tests.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #21193 from viirya/SPARK-24121.
2018-05-23 01:50:22 +08:00
Maxim Gekk 8086acc2f6 [SPARK-24244][SQL] Passing only required columns to the CSV parser
## What changes were proposed in this pull request?

uniVocity parser allows to specify only required column names or indexes for [parsing](https://www.univocity.com/pages/parsers-tutorial) like:

```
// Here we select only the columns by their indexes.
// The parser just skips the values in other columns
parserSettings.selectIndexes(4, 0, 1);
CsvParser parser = new CsvParser(parserSettings);
```
In this PR, I propose to extract indexes from required schema and pass them into the CSV parser. Benchmarks show the following improvements in parsing of 1000 columns:

```
Select 100 columns out of 1000: x1.76
Select 1 column out of 1000: x2
```

**Note**: Comparing to current implementation, the changes can return different result for malformed rows in the `DROPMALFORMED` and `FAILFAST` modes if only subset of all columns is requested. To have previous behavior, set `spark.sql.csv.parser.columnPruning.enabled` to `false`.

## How was this patch tested?

It was tested by new test which selects 3 columns out of 15, by existing tests and by new benchmarks.

Author: Maxim Gekk <maxim.gekk@databricks.com>

Closes #21296 from MaxGekk/csv-column-pruning.
2018-05-22 22:07:32 +08:00
Yuming Wang fc743f7b30 [SPARK-20120][SQL][FOLLOW-UP] Better way to support spark-sql silent mode.
## What changes were proposed in this pull request?

`spark-sql` silent mode will broken if`SPARK_HOME/jars` missing `kubernetes-model-2.0.0.jar`.
This pr use `sc.setLogLevel (<logLevel>)` to implement silent mode.

## How was this patch tested?

manual tests

```
build/sbt -Phive -Phive-thriftserver package
export SPARK_PREPEND_CLASSES=true
./bin/spark-sql -S
```

Author: Yuming Wang <yumwang@ebay.com>

Closes #20274 from wangyum/SPARK-20120-FOLLOW-UP.
2018-05-22 08:20:59 -05:00
Marco Gaido d3d1807315 [SPARK-24313][SQL] Fix collection operations' interpreted evaluation for complex types
## What changes were proposed in this pull request?

The interpreted evaluation of several collection operations works only for simple datatypes. For complex data types, for instance, `array_contains` it returns always `false`. The list of the affected functions is `array_contains`, `array_position`, `element_at` and `GetMapValue`.

The PR fixes the behavior for all the datatypes.

## How was this patch tested?

added UT

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21361 from mgaido91/SPARK-24313.
2018-05-22 21:08:49 +08:00
Kris Mok 952e4d1c83 [SPARK-24321][SQL] Extract common code from Divide/Remainder to a base trait
## What changes were proposed in this pull request?

Extract common code from `Divide`/`Remainder` to a new base trait, `DivModLike`.

Further refactoring to make `Pmod` work with `DivModLike` is to be done as a separate task.

## How was this patch tested?

Existing tests in `ArithmeticExpressionSuite` covers the functionality.

Author: Kris Mok <kris.mok@databricks.com>

Closes #21367 from rednaxelafx/catalyst-divmod.
2018-05-22 19:12:30 +08:00
Marco Gaido 84d31aa5d4 [SPARK-24209][SHS] Automatic retrieve proxyBase from Knox headers
## What changes were proposed in this pull request?

The PR retrieves the proxyBase automatically from the header `X-Forwarded-Context` (if available). This is the header used by Knox to inform the proxied service about the base path.

This provides 0-configuration support for Knox gateway (instead of having to properly set `spark.ui.proxyBase`) and it allows to access directly SHS when it is proxied by Knox. In the previous scenario, indeed, after setting `spark.ui.proxyBase`, direct access to SHS was not working fine (due to bad link generated).

## How was this patch tested?

added UT + manual tests

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21268 from mgaido91/SPARK-24209.
2018-05-21 18:11:05 -07:00
Maxim Gekk b550b2a1a1 [SPARK-24325] Tests for Hadoop's LinesReader
## What changes were proposed in this pull request?

The tests cover basic functionality of [Hadoop LinesReader](8d79113b81/sql/core/src/main/scala/org/apache/spark/sql/execution/datasources/HadoopFileLinesReader.scala (L42)). In particular, the added tests check:

- A split slices a line or delimiter
- A split slices two consecutive lines and cover a delimiter between the lines
- Two splits slice a line and there are no duplicates
- Internal buffer size (`io.file.buffer.size`) is less than line length
- Constrain of maximum line length - `mapreduce.input.linerecordreader.line.maxlength`

Author: Maxim Gekk <maxim.gekk@databricks.com>

Closes #21377 from MaxGekk/line-reader-tests.
2018-05-21 14:21:05 -07:00
Jose Torres a33dcf4a0b [SPARK-24234][SS] Reader for continuous processing shuffle
## What changes were proposed in this pull request?

Read RDD for continuous processing shuffle, as well as the initial RPC-based row receiver.

https://docs.google.com/document/d/1IL4kJoKrZWeyIhklKUJqsW-yEN7V7aL05MmM65AYOfE/edit#heading=h.8t3ci57f7uii

## How was this patch tested?

new unit tests

Author: Jose Torres <torres.joseph.f+github@gmail.com>

Closes #21337 from jose-torres/readerRddMaster.
2018-05-21 12:58:05 -07:00
Wenchen Fan 03e90f65bf [SPARK-24250][SQL] support accessing SQLConf inside tasks
re-submit https://github.com/apache/spark/pull/21299 which broke build.

A few new commits are added to fix the SQLConf problem in `JsonSchemaInference.infer`, and prevent us to access `SQLConf` in DAGScheduler event loop thread.

## What changes were proposed in this pull request?

Previously in #20136 we decided to forbid tasks to access `SQLConf`, because it doesn't work and always give you the default conf value. In #21190 we fixed the check and all the places that violate it.

Currently the pattern of accessing configs at the executor side is: read the configs at the driver side, then access the variables holding the config values in the RDD closure, so that they will be serialized to the executor side. Something like
```
val someConf = conf.getXXX
child.execute().mapPartitions {
  if (someConf == ...) ...
  ...
}
```

However, this pattern is hard to apply if the config needs to be propagated via a long call stack. An example is `DataType.sameType`, and see how many changes were made in #21190 .

When it comes to code generation, it's even worse. I tried it locally and we need to change a ton of files to propagate configs to code generators.

This PR proposes to allow tasks to access `SQLConf`. The idea is, we can save all the SQL configs to job properties when an SQL execution is triggered. At executor side we rebuild the `SQLConf` from job properties.

## How was this patch tested?

a new test suite

Author: Wenchen Fan <wenchen@databricks.com>

Closes #21376 from cloud-fan/config.
2018-05-22 00:19:18 +08:00
Marek Novotny a6e883feb3 [SPARK-23935][SQL] Adding map_entries function
## What changes were proposed in this pull request?

This PR adds `map_entries` function that returns an unordered array of all entries in the given map.

## How was this patch tested?

New tests added into:
- `CollectionExpressionSuite`
- `DataFrameFunctionsSuite`

## CodeGen examples
### Primitive types
```
val df = Seq(Map(1 -> 5, 2 -> 6)).toDF("m")
df.filter('m.isNotNull).select(map_entries('m)).debugCodegen
```
Result:
```
/* 042 */         boolean project_isNull_0 = false;
/* 043 */
/* 044 */         ArrayData project_value_0 = null;
/* 045 */
/* 046 */         final int project_numElements_0 = inputadapter_value_0.numElements();
/* 047 */         final ArrayData project_keys_0 = inputadapter_value_0.keyArray();
/* 048 */         final ArrayData project_values_0 = inputadapter_value_0.valueArray();
/* 049 */
/* 050 */         final long project_size_0 = UnsafeArrayData.calculateSizeOfUnderlyingByteArray(
/* 051 */           project_numElements_0,
/* 052 */           32);
/* 053 */         if (project_size_0 > 2147483632) {
/* 054 */           final Object[] project_internalRowArray_0 = new Object[project_numElements_0];
/* 055 */           for (int z = 0; z < project_numElements_0; z++) {
/* 056 */             project_internalRowArray_0[z] = new org.apache.spark.sql.catalyst.expressions.GenericInternalRow(new Object[]{project_keys_0.getInt(z), project_values_0.getInt(z)});
/* 057 */           }
/* 058 */           project_value_0 = new org.apache.spark.sql.catalyst.util.GenericArrayData(project_internalRowArray_0);
/* 059 */
/* 060 */         } else {
/* 061 */           final byte[] project_arrayBytes_0 = new byte[(int)project_size_0];
/* 062 */           UnsafeArrayData project_unsafeArrayData_0 = new UnsafeArrayData();
/* 063 */           Platform.putLong(project_arrayBytes_0, 16, project_numElements_0);
/* 064 */           project_unsafeArrayData_0.pointTo(project_arrayBytes_0, 16, (int)project_size_0);
/* 065 */
/* 066 */           final int project_structsOffset_0 = UnsafeArrayData.calculateHeaderPortionInBytes(project_numElements_0) + project_numElements_0 * 8;
/* 067 */           UnsafeRow project_unsafeRow_0 = new UnsafeRow(2);
/* 068 */           for (int z = 0; z < project_numElements_0; z++) {
/* 069 */             long offset = project_structsOffset_0 + z * 24L;
/* 070 */             project_unsafeArrayData_0.setLong(z, (offset << 32) + 24L);
/* 071 */             project_unsafeRow_0.pointTo(project_arrayBytes_0, 16 + offset, 24);
/* 072 */             project_unsafeRow_0.setInt(0, project_keys_0.getInt(z));
/* 073 */             project_unsafeRow_0.setInt(1, project_values_0.getInt(z));
/* 074 */           }
/* 075 */           project_value_0 = project_unsafeArrayData_0;
/* 076 */
/* 077 */         }
```
### Non-primitive types
```
val df = Seq(Map("a" -> "foo", "b" -> null)).toDF("m")
df.filter('m.isNotNull).select(map_entries('m)).debugCodegen
```
Result:
```
/* 042 */         boolean project_isNull_0 = false;
/* 043 */
/* 044 */         ArrayData project_value_0 = null;
/* 045 */
/* 046 */         final int project_numElements_0 = inputadapter_value_0.numElements();
/* 047 */         final ArrayData project_keys_0 = inputadapter_value_0.keyArray();
/* 048 */         final ArrayData project_values_0 = inputadapter_value_0.valueArray();
/* 049 */
/* 050 */         final Object[] project_internalRowArray_0 = new Object[project_numElements_0];
/* 051 */         for (int z = 0; z < project_numElements_0; z++) {
/* 052 */           project_internalRowArray_0[z] = new org.apache.spark.sql.catalyst.expressions.GenericInternalRow(new Object[]{project_keys_0.getUTF8String(z), project_values_0.getUTF8String(z)});
/* 053 */         }
/* 054 */         project_value_0 = new org.apache.spark.sql.catalyst.util.GenericArrayData(project_internalRowArray_0);
```

Author: Marek Novotny <mn.mikke@gmail.com>

Closes #21236 from mn-mikke/feature/array-api-map_entries-to-master.
2018-05-21 23:14:03 +09:00
Kazuaki Ishizaki e480eccd97 [SPARK-24323][SQL] Fix lint-java errors
## What changes were proposed in this pull request?

This PR fixes the following errors reported by `lint-java`
```
% dev/lint-java
Using `mvn` from path: /usr/bin/mvn
Checkstyle checks failed at following occurrences:
[ERROR] src/main/java/org/apache/spark/sql/sources/v2/reader/InputPartition.java:[39] (sizes) LineLength: Line is longer than 100 characters (found 104).
[ERROR] src/main/java/org/apache/spark/sql/sources/v2/reader/InputPartitionReader.java:[26] (sizes) LineLength: Line is longer than 100 characters (found 110).
[ERROR] src/main/java/org/apache/spark/sql/sources/v2/reader/InputPartitionReader.java:[30] (sizes) LineLength: Line is longer than 100 characters (found 104).
```

## How was this patch tested?

Run `lint-java` manually.

Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com>

Closes #21374 from kiszk/SPARK-24323.
2018-05-21 15:42:04 +08:00
Liang-Chi Hsieh 6d7d45a1af [SPARK-24242][SQL] RangeExec should have correct outputOrdering and outputPartitioning
## What changes were proposed in this pull request?

Logical `Range` node has been added with `outputOrdering` recently. It's used to eliminate redundant `Sort` during optimization. However, this `outputOrdering` doesn't not propagate to physical `RangeExec` node.

We also add correct `outputPartitioning` to `RangeExec` node.

## How was this patch tested?

Added test.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #21291 from viirya/SPARK-24242.
2018-05-21 15:39:35 +08:00
Wenchen Fan 000e25ae79 Revert "[SPARK-24250][SQL] support accessing SQLConf inside tasks"
This reverts commit dd37529a8d.
2018-05-20 16:13:42 +08:00
Wenchen Fan dd37529a8d [SPARK-24250][SQL] support accessing SQLConf inside tasks
## What changes were proposed in this pull request?

Previously in #20136 we decided to forbid tasks to access `SQLConf`, because it doesn't work and always give you the default conf value. In #21190 we fixed the check and all the places that violate it.

Currently the pattern of accessing configs at the executor side is: read the configs at the driver side, then access the variables holding the config values in the RDD closure, so that they will be serialized to the executor side. Something like
```
val someConf = conf.getXXX
child.execute().mapPartitions {
  if (someConf == ...) ...
  ...
}
```

However, this pattern is hard to apply if the config needs to be propagated via a long call stack. An example is `DataType.sameType`, and see how many changes were made in #21190 .

When it comes to code generation, it's even worse. I tried it locally and we need to change a ton of files to propagate configs to code generators.

This PR proposes to allow tasks to access `SQLConf`. The idea is, we can save all the SQL configs to job properties when an SQL execution is triggered. At executor side we rebuild the `SQLConf` from job properties.

## How was this patch tested?

a new test suite

Author: Wenchen Fan <wenchen@databricks.com>

Closes #21299 from cloud-fan/config.
2018-05-19 18:51:02 +08:00
Efim Poberezkin 434d74e337 [SPARK-23503][SS] Enforce sequencing of committed epochs for Continuous Execution
## What changes were proposed in this pull request?

Made changes to EpochCoordinator so that it enforces a commit order. In case a message for epoch n is lost and epoch (n + 1) is ready for commit before epoch n is, epoch (n + 1) will wait for epoch n to be committed first.

## How was this patch tested?

Existing tests in ContinuousSuite and EpochCoordinatorSuite.

Author: Efim Poberezkin <efim@poberezkin.ru>

Closes #20936 from efimpoberezkin/pr/sequence-commited-epochs.
2018-05-18 16:54:39 -07:00
Arun Mahadevan 710e4e81a8 [SPARK-24308][SQL] Handle DataReaderFactory to InputPartition rename in left over classes
## What changes were proposed in this pull request?

SPARK-24073 renames DataReaderFactory -> InputPartition and DataReader -> InputPartitionReader. Some classes still reflects the old name and causes confusion. This patch renames the left over classes to reflect the new interface and fixes a few comments.

## How was this patch tested?

Existing unit tests.

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: Arun Mahadevan <arunm@apache.org>

Closes #21355 from arunmahadevan/SPARK-24308.
2018-05-18 14:37:01 -07:00
Takeshi Yamamuro a53ea70c1d [SPARK-23856][SQL] Add an option queryTimeout in JDBCOptions
## What changes were proposed in this pull request?
This pr added an option `queryTimeout` for the number of seconds the  the driver will wait for a Statement object to execute.

## How was this patch tested?
Added tests in `JDBCSuite`.

Author: Takeshi Yamamuro <yamamuro@apache.org>

Closes #21173 from maropu/SPARK-23856.
2018-05-18 13:38:36 -07:00
Dongjoon Hyun 7f82c4a47e [SPARK-24312][SQL] Upgrade to 2.3.3 for Hive Metastore Client 2.3
## What changes were proposed in this pull request?

Hive 2.3.3 was [released on April 3rd](https://issues.apache.org/jira/secure/ReleaseNote.jspa?version=12342162&styleName=Text&projectId=12310843). This PR aims to upgrade Hive Metastore Client 2.3 from 2.3.2 to 2.3.3.

## How was this patch tested?

Pass the Jenkins with the existing tests.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #21359 from dongjoon-hyun/SPARK-24312.
2018-05-18 12:54:19 -07:00
gatorsmile 1c4553d67d Revert "[SPARK-24277][SQL] Code clean up in SQL module: HadoopMapReduceCommitProtocol"
This reverts commit 7b2dca5b12.
2018-05-18 12:51:09 -07:00
Marcelo Vanzin ed7ba7db8f [SPARK-23850][SQL] Add separate config for SQL options redaction.
The old code was relying on a core configuration and extended its
default value to include things that redact desired things in the
app's environment. Instead, add a SQL-specific option for which
options to redact, and apply both the core and SQL-specific rules
when redacting the options in the save command.

This is a little sub-optimal since it adds another config, but it
retains the current default behavior.

While there I also fixed a typo and a couple of minor config API
usage issues in the related redaction option that SQL already had.

Tested with existing unit tests, plus checking the env page on
a shell UI.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #21158 from vanzin/SPARK-23850.
2018-05-18 11:14:22 -07:00
Tathagata Das 807ba44cb7 [SPARK-24159][SS] Enable no-data micro batches for streaming mapGroupswithState
## What changes were proposed in this pull request?

Enabled no-data batches in flatMapGroupsWithState in following two cases.
- When ProcessingTime timeout is used, then we always run a batch every trigger interval.
- When event-time watermark is defined, then the user may be doing arbitrary logic against the watermark value even if timeouts are not set. In such cases, it's best to run batches whenever the watermark has changed, irrespective of whether timeouts (i.e. event-time timeout) have been explicitly enabled.

## How was this patch tested?
updated tests

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #21345 from tdas/SPARK-24159.
2018-05-18 10:35:43 -07:00
Soham Aurangabadkar 7696b9de0d [SPARK-20538][SQL] Wrap Dataset.reduce with withNewRddExecutionId.
## What changes were proposed in this pull request?

Wrap Dataset.reduce with `withNewExecutionId`.

Author: Soham Aurangabadkar <sohama4@gmail.com>

Closes #21316 from sohama4/dataset_reduce_withexecutionid.
2018-05-18 10:29:34 -07:00
Gengliang Wang 7b2dca5b12 [SPARK-24277][SQL] Code clean up in SQL module: HadoopMapReduceCommitProtocol
## What changes were proposed in this pull request?

In HadoopMapReduceCommitProtocol and FileFormatWriter, there are unnecessary settings in hadoop configuration.

Also clean up some code in SQL module.

## How was this patch tested?

Unit test

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21329 from gengliangwang/codeCleanWrite.
2018-05-18 15:32:29 +08:00
jinxing 8a837bf4f3 [SPARK-24193] create TakeOrderedAndProjectExec only when the limit number is below spark.sql.execution.topKSortFallbackThreshold.
## What changes were proposed in this pull request?

Physical plan of `select colA from t order by colB limit M` is `TakeOrderedAndProject`;
Currently `TakeOrderedAndProject` sorts data in memory, see https://github.com/apache/spark/blob/master/sql/core/src/main/scala/org/apache/spark/sql/execution/limit.scala#L158
We can add a config – if the number of limit (M) is too big, we can sort by disk. Thus memory issue can be resolved.

## How was this patch tested?

Test added

Author: jinxing <jinxing6042@126.com>

Closes #21252 from jinxing64/SPARK-24193.
2018-05-17 22:29:18 +08:00
Marco Gaido 69350aa2f0 [SPARK-23922][SQL] Add arrays_overlap function
## What changes were proposed in this pull request?

The PR adds the function `arrays_overlap`. This function returns `true` if the input arrays contain a non-null common element; if not, it returns `null` if any of the arrays contains a `null` element, `false` otherwise.

## How was this patch tested?

added UTs

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21028 from mgaido91/SPARK-23922.
2018-05-17 20:45:32 +08:00
Florent Pépin 3e66350c24 [SPARK-23925][SQL] Add array_repeat collection function
## What changes were proposed in this pull request?

The PR adds a new collection function, array_repeat. As there already was a function repeat with the same signature, with the only difference being the expected return type (String instead of Array), the new function is called array_repeat to distinguish.
The behaviour of the function is based on Presto's one.

The function creates an array containing a given element repeated the requested number of times.

## How was this patch tested?

New unit tests added into:
- CollectionExpressionsSuite
- DataFrameFunctionsSuite

Author: Florent Pépin <florentpepin.92@gmail.com>
Author: Florent Pépin <florent.pepin14@imperial.ac.uk>

Closes #21208 from pepinoflo/SPARK-23925.
2018-05-17 13:31:14 +09:00
Tathagata Das 991726f31a [SPARK-24158][SS] Enable no-data batches for streaming joins
## What changes were proposed in this pull request?

This is a continuation of the larger task of enabling zero-data batches for more eager state cleanup. This PR enables it for stream-stream joins.

## How was this patch tested?
- Updated join tests. Additionally, updated them to not use `CheckLastBatch` anywhere to set good precedence for future.

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #21253 from tdas/SPARK-24158.
2018-05-16 14:55:02 -07:00
Gengliang Wang 6fb7d6c4f7 [SPARK-24275][SQL] Revise doc comments in InputPartition
## What changes were proposed in this pull request?

In #21145,  DataReaderFactory is renamed to InputPartition.

This PR is to revise wording in the comments to make it more clear.

## How was this patch tested?

None

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21326 from gengliangwang/revise_reader_comments.
2018-05-17 00:40:39 +08:00
Wenchen Fan 943493b165 Revert "[SPARK-22938][SQL][FOLLOWUP] Assert that SQLConf.get is acces…
…sed only on the driver"

This reverts commit a4206d58e0.

This is from https://github.com/apache/spark/pull/21299 and to ease the review of it.

Author: Wenchen Fan <wenchen@databricks.com>

Closes #21341 from cloud-fan/revert.
2018-05-16 22:01:24 +08:00
Jose Torres 3fabbc5762 [SPARK-24040][SS] Support single partition aggregates in continuous processing.
## What changes were proposed in this pull request?

Support aggregates with exactly 1 partition in continuous processing.

A few small tweaks are needed to make this work:

* Replace currentEpoch tracking with an ThreadLocal. This means that current epoch is scoped to a task rather than a node, but I think that's sustainable even once we add shuffle.
* Add a new testing-only flag to disable the UnsupportedOperationChecker whitelist of allowed continuous processing nodes. I think this is preferable to writing a pile of custom logic to enforce that there is in fact only 1 partition; we plan to support multi-partition aggregates before the next Spark release, so we'd just have to tear that logic back out.
* Restart continuous processing queries from the first available uncommitted epoch, rather than one that's guaranteed to be unused. This is required for stateful operators to overwrite partial state from the previous attempt at the epoch, and there was no specific motivation for the original strategy. In another PR before stabilizing the StreamWriter API, we'll need to narrow down and document more precise semantic guarantees for the epoch IDs.
* We need a single-partition ContinuousMemoryStream. The way MemoryStream is constructed means it can't be a text option like it is for rate source, unfortunately.

## How was this patch tested?

new unit tests

Author: Jose Torres <torres.joseph.f+github@gmail.com>

Closes #21239 from jose-torres/withAggr.
2018-05-15 10:25:29 -07:00
Liang-Chi Hsieh d610d2a3f5 [SPARK-24259][SQL] ArrayWriter for Arrow produces wrong output
## What changes were proposed in this pull request?

Right now `ArrayWriter` used to output Arrow data for array type, doesn't do `clear` or `reset` after each batch. It produces wrong output.

## How was this patch tested?

Added test.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #21312 from viirya/SPARK-24259.
2018-05-15 22:06:58 +08:00
maryannxue 80c6d35a3e [SPARK-24035][SQL] SQL syntax for Pivot - fix antlr warning
## What changes were proposed in this pull request?

1. Change antlr rule to fix the warning.
2. Add PIVOT/LATERAL check in AstBuilder with a more meaningful error message.

## How was this patch tested?

1. Add a counter case in `PlanParserSuite.test("lateral view")`

Author: maryannxue <maryann.xue@gmail.com>

Closes #21324 from maryannxue/spark-24035-fix.
2018-05-14 23:34:42 -07:00
Goun Na e29176fd7d [SPARK-23627][SQL] Provide isEmpty in Dataset
## What changes were proposed in this pull request?

This PR adds isEmpty() in DataSet

## How was this patch tested?

Unit tests added

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: Goun Na <gounna@gmail.com>
Author: goungoun <gounna@gmail.com>

Closes #20800 from goungoun/SPARK-23627.
2018-05-15 14:11:20 +08:00
Henry Robinson 061e0084ce [SPARK-23852][SQL] Add withSQLConf(...) to test case
## What changes were proposed in this pull request?

Add a `withSQLConf(...)` wrapper to force Parquet filter pushdown for a test that relies on it.

## How was this patch tested?

Test passes

Author: Henry Robinson <henry@apache.org>

Closes #21323 from henryr/spark-23582.
2018-05-14 14:35:08 -07:00
Maxim Gekk 8cd83acf40 [SPARK-24027][SQL] Support MapType with StringType for keys as the root type by from_json
## What changes were proposed in this pull request?

Currently, the from_json function support StructType or ArrayType as the root type. The PR allows to specify MapType(StringType, DataType) as the root type additionally to mentioned types. For example:

```scala
import org.apache.spark.sql.types._
val schema = MapType(StringType, IntegerType)
val in = Seq("""{"a": 1, "b": 2, "c": 3}""").toDS()
in.select(from_json($"value", schema, Map[String, String]())).collect()
```
```
res1: Array[org.apache.spark.sql.Row] = Array([Map(a -> 1, b -> 2, c -> 3)])
```

## How was this patch tested?

It was checked by new tests for the map type with integer type and struct type as value types. Also roundtrip tests like from_json(to_json) and to_json(from_json) for MapType are added.

Author: Maxim Gekk <maxim.gekk@databricks.com>
Author: Maxim Gekk <max.gekk@gmail.com>

Closes #21108 from MaxGekk/from_json-map-type.
2018-05-14 14:05:42 -07:00
Shixiong Zhu c26f673252 [SPARK-24246][SQL] Improve AnalysisException by setting the cause when it's available
## What changes were proposed in this pull request?

If there is an exception, it's better to set it as the cause of AnalysisException since the exception may contain useful debug information.

## How was this patch tested?

Jenkins

Author: Shixiong Zhu <zsxwing@gmail.com>

Closes #21297 from zsxwing/SPARK-24246.
2018-05-14 11:37:57 -07:00
Kazuaki Ishizaki b6c50d7820 [SPARK-24228][SQL] Fix Java lint errors
## What changes were proposed in this pull request?
This PR fixes the following Java lint errors due to importing unimport classes

```
$ dev/lint-java
Using `mvn` from path: /usr/bin/mvn
Checkstyle checks failed at following occurrences:
[ERROR] src/main/java/org/apache/spark/sql/sources/v2/reader/partitioning/Distribution.java:[25] (sizes) LineLength: Line is longer than 100 characters (found 109).
[ERROR] src/main/java/org/apache/spark/sql/sources/v2/reader/streaming/ContinuousReader.java:[38] (sizes) LineLength: Line is longer than 100 characters (found 102).
[ERROR] src/main/java/org/apache/spark/sql/execution/datasources/parquet/SpecificParquetRecordReaderBase.java:[21,8] (imports) UnusedImports: Unused import - java.io.ByteArrayInputStream.
[ERROR] src/main/java/org/apache/spark/sql/execution/datasources/parquet/VectorizedPlainValuesReader.java:[29,8] (imports) UnusedImports: Unused import - org.apache.spark.unsafe.Platform.
[ERROR] src/test/java/test/org/apache/spark/sql/sources/v2/JavaAdvancedDataSourceV2.java:[110] (sizes) LineLength: Line is longer than 100 characters (found 101).
```

With this PR
```
$ dev/lint-java
Using `mvn` from path: /usr/bin/mvn
Checkstyle checks passed.
```

## How was this patch tested?

Existing UTs. Also manually run checkstyles against these two files.

Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com>

Closes #21301 from kiszk/SPARK-24228.
2018-05-14 10:57:10 +08:00
Maxim Gekk 7a2d4895c7 [SPARK-17916][SQL] Fix empty string being parsed as null when nullValue is set.
## What changes were proposed in this pull request?

I propose to bump version of uniVocity parser up to 2.6.3 where quoted empty strings are replaced by the empty value (passed to `setEmptyValue`) instead of `null` values as in the current version 2.5.9:
https://github.com/uniVocity/univocity-parsers/blob/v2.6.3/src/main/java/com/univocity/parsers/csv/CsvParser.java#L125

Empty value for writer is set to `""`. So, empty string in dataframe/dataset is stored as empty quoted string `""`. Empty value for reader is set to empty string (zero size). In this way, saved empty quoted string will be read as just empty string. Please, look at the tests for more details.

Here are main changes made in [2.6.0](https://github.com/uniVocity/univocity-parsers/releases/tag/v2.6.0), [2.6.1](https://github.com/uniVocity/univocity-parsers/releases/tag/v2.6.1), [2.6.2](https://github.com/uniVocity/univocity-parsers/releases/tag/v2.6.2), [2.6.3](https://github.com/uniVocity/univocity-parsers/releases/tag/v2.6.3):

- CSV parser now parses quoted values ~30% faster
- CSV format detection process has option provide a list of possible delimiters, in order of priority ( i.e. settings.detectFormatAutomatically( '-', '.');) - https://github.com/uniVocity/univocity-parsers/issues/214
- Implemented trim quoted values support - https://github.com/uniVocity/univocity-parsers/issues/230
- NullPointer when stopping parser when nothing is parsed - https://github.com/uniVocity/univocity-parsers/issues/219
- Concurrency issue when calling stopParsing() - https://github.com/uniVocity/univocity-parsers/issues/231

Closes #20068

## How was this patch tested?

Added tests from the PR https://github.com/apache/spark/pull/20068

Author: Maxim Gekk <maxim.gekk@databricks.com>

Closes #21273 from MaxGekk/univocity-2.6.
2018-05-14 10:01:06 +08:00
Cody Allen 32acfa78c6 Improve implicitNotFound message for Encoder
The `implicitNotFound` message for `Encoder` doesn't mention the name of
the type for which it can't find an encoder. Furthermore, it covers up
the fact that `Encoder` is the name of the relevant type class.
Hopefully this new message provides a little more specific type detail
while still giving the general message about which types are supported.

## What changes were proposed in this pull request?

Augment the existing message to mention that it's looking for an `Encoder` and what the type of the encoder is.

For example instead of:

```
Unable to find encoder for type stored in a Dataset.  Primitive types (Int, String, etc) and Product types (case classes) are supported by importing spark.implicits._  Support for serializing other types will be added in future releases.
```

return this message:

```
Unable to find encoder for type Exception. An implicit Encoder[Exception] is needed to store Exception instances in a Dataset. Primitive types (Int, String, etc) and Product types (ca
se classes) are supported by importing spark.implicits._  Support for serializing other types will be added in future releases.
```

## How was this patch tested?

It was tested manually in the Scala REPL, since triggering this in a test would cause a compilation error.

```
scala> implicitly[Encoder[Exception]]
<console>:51: error: Unable to find encoder for type Exception. An implicit Encoder[Exception] is needed to store Exception instances in a Dataset. Primitive types (Int, String, etc) and Product types (ca
se classes) are supported by importing spark.implicits._  Support for serializing other types will be added in future releases.
       implicitly[Encoder[Exception]]
                 ^
```

Author: Cody Allen <ceedubs@gmail.com>

Closes #20869 from ceedubs/encoder-implicit-msg.
2018-05-12 14:35:40 -05:00
Reynold Xin e3dabdf6ef [SPARK-23907] Removes regr_* functions in functions.scala
## What changes were proposed in this pull request?
This patch removes the various regr_* functions in functions.scala. They are so uncommon that I don't think they deserve real estate in functions.scala. We can consider adding them later if more users need them.

## How was this patch tested?
Removed the associated test case as well.

Author: Reynold Xin <rxin@databricks.com>

Closes #21309 from rxin/SPARK-23907.
2018-05-12 12:15:36 +08:00
aditkumar 92f6f52ff0 [MINOR][DOCS] Documenting months_between direction
## What changes were proposed in this pull request?

It's useful to know what relationship between date1 and date2 results in a positive number.

Author: aditkumar <aditkumar@gmail.com>
Author: Adit Kumar <aditkumar@gmail.com>

Closes #20787 from aditkumar/master.
2018-05-11 14:42:23 -05:00
Wenchen Fan 928845a422 [SPARK-24172][SQL] we should not apply operator pushdown to data source v2 many times
## What changes were proposed in this pull request?

In `PushDownOperatorsToDataSource`, we use `transformUp` to match `PhysicalOperation` and apply pushdown. This is problematic if we have multiple `Filter` and `Project` above the data source v2 relation.

e.g. for a query
```
Project
  Filter
    DataSourceV2Relation
```

The pattern match will be triggered twice and we will do operator pushdown twice. This is unnecessary, we can use `mapChildren` to only apply pushdown once.

## How was this patch tested?

existing test

Author: Wenchen Fan <wenchen@databricks.com>

Closes #21230 from cloud-fan/step2.
2018-05-11 10:00:28 -07:00
Wenchen Fan a4206d58e0 [SPARK-22938][SQL][FOLLOWUP] Assert that SQLConf.get is accessed only on the driver
## What changes were proposed in this pull request?

This is a followup of https://github.com/apache/spark/pull/20136 . #20136 didn't really work because in the test, we are using local backend, which shares the driver side `SparkEnv`, so `SparkEnv.get.executorId == SparkContext.DRIVER_IDENTIFIER` doesn't work.

This PR changes the check to `TaskContext.get != null`, and move the check to `SQLConf.get`, and fix all the places that violate this check:
* `InMemoryTableScanExec#createAndDecompressColumn` is executed inside `rdd.map`, we can't access `conf.offHeapColumnVectorEnabled` there. https://github.com/apache/spark/pull/21223 merged
* `DataType#sameType` may be executed in executor side, for things like json schema inference, so we can't call `conf.caseSensitiveAnalysis` there. This contributes to most of the code changes, as we need to add `caseSensitive` parameter to a lot of methods.
* `ParquetFilters` is used in the file scan function, which is executed in executor side, so we can't can't call `conf.parquetFilterPushDownDate` there. https://github.com/apache/spark/pull/21224 merged
* `WindowExec#createBoundOrdering` is called on executor side, so we can't use `conf.sessionLocalTimezone` there. https://github.com/apache/spark/pull/21225 merged
* `JsonToStructs` can be serialized to executors and evaluate, we should not call `SQLConf.get.getConf(SQLConf.FROM_JSON_FORCE_NULLABLE_SCHEMA)` in the body. https://github.com/apache/spark/pull/21226 merged

## How was this patch tested?

existing test

Author: Wenchen Fan <wenchen@databricks.com>

Closes #21190 from cloud-fan/minor.
2018-05-11 09:01:40 +08:00
Maxim Gekk f4fed05121 [SPARK-24171] Adding a note for non-deterministic functions
## What changes were proposed in this pull request?

I propose to add a clear statement for functions like `collect_list()` about non-deterministic behavior of such functions. The behavior must be taken into account by user while creating and running queries.

Author: Maxim Gekk <maxim.gekk@databricks.com>

Closes #21228 from MaxGekk/deterministic-comments.
2018-05-10 09:44:49 -07:00
Marco Gaido 94d6714482 [SPARK-23907][SQL] Add regr_* functions
## What changes were proposed in this pull request?

The PR introduces regr_slope, regr_intercept, regr_r2, regr_sxx, regr_syy, regr_sxy, regr_avgx, regr_avgy, regr_count.

The implementation of this functions mirrors Hive's one in HIVE-15978.

## How was this patch tested?

added UT (values compared with Hive)

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21054 from mgaido91/SPARK-23907.
2018-05-10 20:38:52 +09:00
Dongjoon Hyun e3d4349947 [SPARK-22279][SQL] Enable convertMetastoreOrc by default
## What changes were proposed in this pull request?

We reverted `spark.sql.hive.convertMetastoreOrc` at https://github.com/apache/spark/pull/20536 because we should not ignore the table-specific compression conf. Now, it's resolved via [SPARK-23355](8aa1d7b0ed).

## How was this patch tested?

Pass the Jenkins.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #21186 from dongjoon-hyun/SPARK-24112.
2018-05-10 13:36:52 +08:00
Ryan Blue 62d01391fe [SPARK-24073][SQL] Rename DataReaderFactory to InputPartition.
## What changes were proposed in this pull request?

Renames:
* `DataReaderFactory` to `InputPartition`
* `DataReader` to `InputPartitionReader`
* `createDataReaderFactories` to `planInputPartitions`
* `createUnsafeDataReaderFactories` to `planUnsafeInputPartitions`
* `createBatchDataReaderFactories` to `planBatchInputPartitions`

This fixes the changes in SPARK-23219, which renamed ReadTask to
DataReaderFactory. The intent of that change was to make the read and
write API match (write side uses DataWriterFactory), but the underlying
problem is that the two classes are not equivalent.

ReadTask/DataReader function as Iterable/Iterator. One InputPartition is
a specific partition of the data to be read, in contrast to
DataWriterFactory where the same factory instance is used in all write
tasks. InputPartition's purpose is to manage the lifecycle of the
associated reader, which is now called InputPartitionReader, with an
explicit create operation to mirror the close operation. This was no
longer clear from the API because DataReaderFactory appeared to be more
generic than it is and it isn't clear why a set of them is produced for
a read.

## How was this patch tested?

Existing tests, which have been updated to use the new name.

Author: Ryan Blue <blue@apache.org>

Closes #21145 from rdblue/SPARK-24073-revert-data-reader-factory-rename.
2018-05-09 21:48:54 -07:00
Henry Robinson 9341c951e8 [SPARK-23852][SQL] Add test that fails if PARQUET-1217 is not fixed
## What changes were proposed in this pull request?

Add a new test that triggers if PARQUET-1217 - a predicate pushdown bug - is not fixed in Spark's Parquet dependency.

## How was this patch tested?

New unit test passes.

Author: Henry Robinson <henry@apache.org>

Closes #21284 from henryr/spark-23852.
2018-05-09 19:56:03 -07:00
Shixiong Zhu fd1179c172 [SPARK-24214][SS] Fix toJSON for StreamingRelationV2/StreamingExecutionRelation/ContinuousExecutionRelation
## What changes were proposed in this pull request?

We should overwrite "otherCopyArgs" to provide the SparkSession parameter otherwise TreeNode.toJSON cannot get the full constructor parameter list.

## How was this patch tested?

The new unit test.

Author: Shixiong Zhu <zsxwing@gmail.com>

Closes #21275 from zsxwing/SPARK-24214.
2018-05-09 11:32:17 -07:00
Marcelo Vanzin cc613b552e [PYSPARK] Update py4j to version 0.10.7. 2018-05-09 10:47:35 -07:00
DB Tsai 6ea582e36a
[SPARK-24181][SQL] Better error message for writing sorted data
## What changes were proposed in this pull request?

The exception message should clearly distinguish sorting and bucketing in `save` and `jdbc` write.

When a user tries to write a sorted data using save or insertInto, it will throw an exception with message that `s"'$operation' does not support bucketing right now""`.

We should throw `s"'$operation' does not support sortBy right now""` instead.

## How was this patch tested?

More tests in `DataFrameReaderWriterSuite.scala`

Author: DB Tsai <d_tsai@apple.com>

Closes #21235 from dbtsai/fixException.
2018-05-09 09:15:16 -07:00
Ryan Blue cac9b1dea1 [SPARK-23972][BUILD][SQL] Update Parquet to 1.10.0.
## What changes were proposed in this pull request?

This updates Parquet to 1.10.0 and updates the vectorized path for buffer management changes. Parquet 1.10.0 uses ByteBufferInputStream instead of byte arrays in encoders. This allows Parquet to break allocations into smaller chunks that are better for garbage collection.

## How was this patch tested?

Existing Parquet tests. Running in production at Netflix for about 3 months.

Author: Ryan Blue <blue@apache.org>

Closes #21070 from rdblue/SPARK-23972-update-parquet-to-1.10.0.
2018-05-09 12:27:32 +08:00
Maxim Gekk e3de6ab30d [SPARK-24068] Propagating DataFrameReader's options to Text datasource on schema inferring
## What changes were proposed in this pull request?

While reading CSV or JSON files, DataFrameReader's options are converted to Hadoop's parameters, for example there:
https://github.com/apache/spark/blob/branch-2.3/sql/core/src/main/scala/org/apache/spark/sql/execution/DataSourceScanExec.scala#L302

but the options are not propagated to Text datasource on schema inferring, for instance:
https://github.com/apache/spark/blob/branch-2.3/sql/core/src/main/scala/org/apache/spark/sql/execution/datasources/csv/CSVDataSource.scala#L184-L188

The PR proposes propagation of user's options to Text datasource on scheme inferring in similar way as user's options are converted to Hadoop parameters if schema is specified.

## How was this patch tested?
The changes were tested manually by using https://github.com/twitter/hadoop-lzo:

```
hadoop-lzo> mvn clean package
hadoop-lzo> ln -s ./target/hadoop-lzo-0.4.21-SNAPSHOT.jar ./hadoop-lzo.jar
```
Create 2 test files in JSON and CSV format and compress them:
```shell
$ cat test.csv
col1|col2
a|1
$ lzop test.csv
$ cat test.json
{"col1":"a","col2":1}
$ lzop test.json
```
Run `spark-shell` with hadoop-lzo:
```
bin/spark-shell --jars ~/hadoop-lzo/hadoop-lzo.jar
```
reading compressed CSV and JSON without schema:
```scala
spark.read.option("io.compression.codecs", "com.hadoop.compression.lzo.LzopCodec").option("inferSchema",true).option("header",true).option("sep","|").csv("test.csv.lzo").show()
+----+----+
|col1|col2|
+----+----+
|   a|   1|
+----+----+
```
```scala
spark.read.option("io.compression.codecs", "com.hadoop.compression.lzo.LzopCodec").option("multiLine", true).json("test.json.lzo").printSchema
root
 |-- col1: string (nullable = true)
 |-- col2: long (nullable = true)
```

Author: Maxim Gekk <maxim.gekk@databricks.com>
Author: Maxim Gekk <max.gekk@gmail.com>

Closes #21182 from MaxGekk/text-options.
2018-05-09 08:32:20 +08:00
Yuming Wang 487faf17ab [SPARK-24117][SQL] Unified the getSizePerRow
## What changes were proposed in this pull request?

This pr unified the `getSizePerRow` because `getSizePerRow` is used in many places. For example:

1. [LocalRelation.scala#L80](f70f46d1e5/sql/catalyst/src/main/scala/org/apache/spark/sql/catalyst/plans/logical/LocalRelation.scala (L80))
2. [SizeInBytesOnlyStatsPlanVisitor.scala#L36](76b8b840dd/sql/catalyst/src/main/scala/org/apache/spark/sql/catalyst/plans/logical/statsEstimation/SizeInBytesOnlyStatsPlanVisitor.scala (L36))

## How was this patch tested?
Exist tests

Author: Yuming Wang <yumwang@ebay.com>

Closes #21189 from wangyum/SPARK-24117.
2018-05-08 23:43:02 +08:00
gatorsmile 2f6fe7d679 [SPARK-23094][SPARK-23723][SPARK-23724][SQL][FOLLOW-UP] Support custom encoding for json files
## What changes were proposed in this pull request?
This is to add a test case to check the behaviors when users write json in the specified UTF-16/UTF-32 encoding with multiline off.

## How was this patch tested?
N/A

Author: gatorsmile <gatorsmile@gmail.com>

Closes #21254 from gatorsmile/followupSPARK-23094.
2018-05-08 21:24:35 +08:00
yucai e17567ca78 [SPARK-24076][SQL] Use different seed in HashAggregate to avoid hash conflict
## What changes were proposed in this pull request?

HashAggregate uses the same hash algorithm and seed as ShuffleExchange, it may lead to bad hash conflict when shuffle.partitions=8192*n.

Considering below example:
```
SET spark.sql.shuffle.partitions=8192;
INSERT OVERWRITE TABLE target_xxx
SELECT
 item_id,
 auct_end_dt
FROM
 from source_xxx
GROUP BY
 item_id,
 auct_end_dt;
```

In the shuffle stage, if user sets the shuffle.partition = 8192, all tuples in the same partition will meet the following relationship:
```
hash(tuple x) = hash(tuple y) + n * 8192
```
Then in the next HashAggregate stage, all tuples from the same partition need be put into a 16K BytesToBytesMap (unsafeRowAggBuffer).

Here, the HashAggregate uses the same hash algorithm on the same expression as shuffle, and uses the same seed, and 16K = 8192 * 2, so actually, all tuples in the same parititon will only be hashed to 2 different places in the BytesToBytesMap. It is bad hash conflict. With BytesToBytesMap growing, the conflict will always exist.

Before change:
<img width="334" alt="hash_conflict" src="https://user-images.githubusercontent.com/2989575/39250210-ed032d46-48d2-11e8-855a-c1afc2a0ceb5.png">

After change:
<img width="334" alt="no_hash_conflict" src="https://user-images.githubusercontent.com/2989575/39250218-f1cb89e0-48d2-11e8-9244-5a93c1e8b60d.png">

## How was this patch tested?

Unit tests and production cases.

Author: yucai <yyu1@ebay.com>

Closes #21149 from yucai/SPARK-24076.
2018-05-08 11:34:27 +02:00
Henry Robinson cd12c5c3ec [SPARK-24128][SQL] Mention configuration option in implicit CROSS JOIN error
## What changes were proposed in this pull request?

Mention `spark.sql.crossJoin.enabled` in error message when an implicit `CROSS JOIN` is detected.

## How was this patch tested?

`CartesianProductSuite` and `JoinSuite`.

Author: Henry Robinson <henry@apache.org>

Closes #21201 from henryr/spark-24128.
2018-05-08 12:21:33 +08:00
Bruce Robbins d83e963724 [SPARK-24043][SQL] Interpreted Predicate should initialize nondeterministic expressions
## What changes were proposed in this pull request?

When creating an InterpretedPredicate instance, initialize any Nondeterministic expressions in the expression tree to avoid java.lang.IllegalArgumentException on later call to eval().

## How was this patch tested?

- sbt SQL tests
- python SQL tests
- new unit test

Author: Bruce Robbins <bersprockets@gmail.com>

Closes #21144 from bersprockets/interpretedpredicate.
2018-05-07 17:54:39 +02:00
Herman van Hovell 4e861db5f1 [SPARK-16406][SQL] Improve performance of LogicalPlan.resolve
## What changes were proposed in this pull request?

`LogicalPlan.resolve(...)` uses linear searches to find an attribute matching a name. This is fine in normal cases, but gets problematic when you try to resolve a large number of columns on a plan with a large number of attributes.

This PR adds an indexing structure to `resolve(...)` in order to find potential matches quicker. This PR improves the reference resolution time for the following code by 4x (11.8s -> 2.4s):

``` scala
val n = 4000
val values = (1 to n).map(_.toString).mkString(", ")
val columns = (1 to n).map("column" + _).mkString(", ")
val query =
  s"""
     |SELECT $columns
     |FROM VALUES ($values) T($columns)
     |WHERE 1=2 AND 1 IN ($columns)
     |GROUP BY $columns
     |ORDER BY $columns
     |""".stripMargin

spark.time(sql(query))
```
## How was this patch tested?

Existing tests.

Author: Herman van Hovell <hvanhovell@databricks.com>

Closes #14083 from hvanhovell/SPARK-16406.
2018-05-07 11:21:22 +02:00
Marco Gaido e35ad3cadd [SPARK-23930][SQL] Add slice function
## What changes were proposed in this pull request?

The PR add the `slice` function. The behavior of the function is based on Presto's one.

The function slices an array according to the requested start index and length.

## How was this patch tested?

added UTs

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21040 from mgaido91/SPARK-23930.
2018-05-07 16:57:37 +09:00
Gabor Somogyi c5981976f1 [SPARK-23775][TEST] Make DataFrameRangeSuite not flaky
## What changes were proposed in this pull request?

DataFrameRangeSuite.test("Cancelling stage in a query with Range.") stays sometimes in an infinite loop and times out the build.

There were multiple issues with the test:

1. The first valid stageId is zero when the test started alone and not in a suite and the following code waits until timeout:

```
eventually(timeout(10.seconds), interval(1.millis)) {
  assert(DataFrameRangeSuite.stageToKill > 0)
}
```

2. The `DataFrameRangeSuite.stageToKill` was overwritten by the task's thread after the reset which ended up in canceling the same stage 2 times. This caused the infinite wait.

This PR solves this mentioned flakyness by removing the shared `DataFrameRangeSuite.stageToKill` and using `onTaskStart` where stage ID is provided. In order to make sure cancelStage called for all stages `waitUntilEmpty` is called on `ListenerBus`.

In [PR20888](https://github.com/apache/spark/pull/20888) this tried to get solved by:
* Stopping the executor thread with `wait`
* Wait for all `cancelStage` called
* Kill the executor thread by setting `SparkContext.SPARK_JOB_INTERRUPT_ON_CANCEL`

but the thread killing left the shared `SparkContext` sometimes in a state where further jobs can't be submitted. As a result DataFrameRangeSuite.test("Cancelling stage in a query with Range.") test passed properly but the next test inside the suite was hanging.

## How was this patch tested?

Existing unit test executed 10k times.

Author: Gabor Somogyi <gabor.g.somogyi@gmail.com>

Closes #21214 from gaborgsomogyi/SPARK-23775_1.
2018-05-07 14:45:14 +08:00
Kazuaki Ishizaki 7564a9a706 [SPARK-23921][SQL] Add array_sort function
## What changes were proposed in this pull request?

The PR adds the SQL function `array_sort`. The behavior of the function is based on Presto's one.

The function sorts the input array in ascending order. The elements of the input array must be orderable. Null elements will be placed at the end of the returned array.

## How was this patch tested?

Added UTs

Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com>

Closes #21021 from kiszk/SPARK-23921.
2018-05-07 15:22:23 +09:00
gatorsmile f38ea00e83 [SPARK-24017][SQL] Refactor ExternalCatalog to be an interface
## What changes were proposed in this pull request?
This refactors the external catalog to be an interface. It can be easier for the future work in the catalog federation. After the refactoring, `ExternalCatalog` is much cleaner without mixing the listener event generation logic.

## How was this patch tested?
The existing tests

Author: gatorsmile <gatorsmile@gmail.com>

Closes #21122 from gatorsmile/refactorExternalCatalog.
2018-05-06 20:41:32 -07:00
Tathagata Das 47b5b68528 [SPARK-24157][SS] Enabled no-data batches in MicroBatchExecution for streaming aggregation and deduplication.
## What changes were proposed in this pull request?

This PR enables the MicroBatchExecution to run no-data batches if some SparkPlan requires running another batch to output results based on updated watermark / processing time. In this PR, I have enabled streaming aggregations and streaming deduplicates to automatically run addition batch even if new data is available. See https://issues.apache.org/jira/browse/SPARK-24156 for more context.

Major changes/refactoring done in this PR.
- Refactoring MicroBatchExecution - A major point of confusion in MicroBatchExecution control flow was always (at least to me) was that `populateStartOffsets` internally called `constructNextBatch` which was not obvious from just the name "populateStartOffsets" and made the control flow from the main trigger execution loop very confusing (main loop in `runActivatedStream` called `constructNextBatch` but only if `populateStartOffsets` hadn't already called it). Instead, the refactoring makes it cleaner.
    - `populateStartOffsets` only the updates `availableOffsets` and `committedOffsets`. Does not call `constructNextBatch`.
    - Main loop in `runActivatedStream` calls `constructNextBatch` which returns true or false reflecting whether the next batch is ready for executing. This method is now idempotent; if a batch has already been constructed, then it will always return true until the batch has been executed.
    - If next batch is ready then we call `runBatch` or sleep.
    - That's it.

- Refactoring watermark management logic - This has been refactored out from `MicroBatchExecution` in a separate class to simplify `MicroBatchExecution`.

- New method `shouldRunAnotherBatch` in `IncrementalExecution` - This returns true if there is any stateful operation in the last execution plan that requires another batch for state cleanup, etc. This is used to decide whether to construct a batch or not in `constructNextBatch`.

- Changes to stream testing framework - Many tests used CheckLastBatch to validate answers. This assumed that there will be no more batches after the last set of input has been processed, so the last batch is the one that has output corresponding to the last input. This is not true anymore. To account for that, I made two changes.
    - `CheckNewAnswer` is a new test action that verifies the new rows generated since the last time the answer was checked by `CheckAnswer`, `CheckNewAnswer` or `CheckLastBatch`. This is agnostic to how many batches occurred between the last check and now. To do make this easier, I added a common trait between MemorySink and MemorySinkV2 to abstract out some common methods.
    - `assertNumStateRows` has been updated in the same way to be agnostic to batches while checking what the total rows and how many state rows were updated (sums up updates since the last check).

## How was this patch tested?
- Changes made to existing tests - Tests have been changed in one of the following patterns.
    - Tests where the last input was given again to force another batch to be executed and state cleaned up / output generated, they were simplified by removing the extra input.
    - Tests using aggregation+watermark where CheckLastBatch were replaced with CheckNewAnswer to make them batch agnostic.
- New tests added to check whether the flag works for streaming aggregation and deduplication

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #21220 from tdas/SPARK-24157.
2018-05-04 16:35:24 -07:00
Jose Torres af4dc50280 [SPARK-24039][SS] Do continuous processing writes with multiple compute() calls
## What changes were proposed in this pull request?

Do continuous processing writes with multiple compute() calls.

The current strategy (before this PR) is hacky; we just call next() on an iterator which has already returned hasNext = false, knowing that all the nodes we whitelist handle this properly. This will have to be changed before we can support more complex query plans. (In particular, I have a WIP https://github.com/jose-torres/spark/pull/13 which should be able to support aggregates in a single partition with minimal additional work.)

Most of the changes here are just refactoring to accommodate the new model. The behavioral changes are:

* The writer now calls prev.compute(split, context) once per epoch within the epoch loop.
* ContinuousDataSourceRDD now spawns a ContinuousQueuedDataReader which is shared across multiple calls to compute() for the same partition.

## How was this patch tested?

existing unit tests

Author: Jose Torres <torres.joseph.f+github@gmail.com>

Closes #21200 from jose-torres/noAggr.
2018-05-04 14:14:40 -07:00
Arun Mahadevan 7f1b6b182e [SPARK-24136][SS] Fix MemoryStreamDataReader.next to skip sleeping if record is available
## What changes were proposed in this pull request?

Avoid unnecessary sleep (10 ms) in each invocation of MemoryStreamDataReader.next.

## How was this patch tested?

Ran ContinuousSuite from IDE.

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: Arun Mahadevan <arunm@apache.org>

Closes #21207 from arunmahadevan/memorystream.
2018-05-04 16:02:21 +08:00
Wenchen Fan 0c23e254c3 [SPARK-24167][SQL] ParquetFilters should not access SQLConf at executor side
## What changes were proposed in this pull request?

This PR is extracted from #21190 , to make it easier to backport.

`ParquetFilters` is used in the file scan function, which is executed in executor side, so we can't call `conf.parquetFilterPushDownDate` there.

## How was this patch tested?

it's tested in #21190

Author: Wenchen Fan <wenchen@databricks.com>

Closes #21224 from cloud-fan/minor2.
2018-05-04 09:27:14 +08:00
Wenchen Fan e646ae67f2 [SPARK-24168][SQL] WindowExec should not access SQLConf at executor side
## What changes were proposed in this pull request?

This PR is extracted from #21190 , to make it easier to backport.

`WindowExec#createBoundOrdering` is called on executor side, so we can't use `conf.sessionLocalTimezone` there.

## How was this patch tested?

tested in #21190

Author: Wenchen Fan <wenchen@databricks.com>

Closes #21225 from cloud-fan/minor3.
2018-05-03 17:27:13 -07:00
maryannxue e3201e165e [SPARK-24035][SQL] SQL syntax for Pivot
## What changes were proposed in this pull request?

Add SQL support for Pivot according to Pivot grammar defined by Oracle (https://docs.oracle.com/database/121/SQLRF/img_text/pivot_clause.htm) with some simplifications, based on our existing functionality and limitations for Pivot at the backend:
1. For pivot_for_clause (https://docs.oracle.com/database/121/SQLRF/img_text/pivot_for_clause.htm), the column list form is not supported, which means the pivot column can only be one single column.
2. For pivot_in_clause (https://docs.oracle.com/database/121/SQLRF/img_text/pivot_in_clause.htm), the sub-query form and "ANY" is not supported (this is only supported by Oracle for XML anyway).
3. For pivot_in_clause, aliases for the constant values are not supported.

The code changes are:
1. Add parser support for Pivot. Note that according to https://docs.oracle.com/database/121/SQLRF/statements_10002.htm#i2076542, Pivot cannot be used together with lateral views in the from clause. This restriction has been implemented in the Parser rule.
2. Infer group-by expressions: group-by expressions are not explicitly specified in SQL Pivot clause and need to be deduced based on this rule: https://docs.oracle.com/database/121/SQLRF/statements_10002.htm#CHDFAFIE, so we have to post-fix it at query analysis stage.
3. Override Pivot.resolved as "false": for the reason mentioned in [2] and the fact that output attributes change after Pivot being replaced by Project or Aggregate, we avoid resolving parent references until after Pivot has been resolved and replaced.
4. Verify aggregate expressions: only aggregate expressions with or without aliases can appear in the first part of the Pivot clause, and this check is performed as analysis stage.

## How was this patch tested?

A new test suite PivotSuite is added.

Author: maryannxue <maryann.xue@gmail.com>

Closes #21187 from maryannxue/spark-24035.
2018-05-03 17:05:02 -07:00
Wenchen Fan 96a50016bb [SPARK-24169][SQL] JsonToStructs should not access SQLConf at executor side
## What changes were proposed in this pull request?

This PR is extracted from #21190 , to make it easier to backport.

`JsonToStructs` can be serialized to executors and evaluate, we should not call `SQLConf.get.getConf(SQLConf.FROM_JSON_FORCE_NULLABLE_SCHEMA)` in the body.

## How was this patch tested?

tested in #21190

Author: Wenchen Fan <wenchen@databricks.com>

Closes #21226 from cloud-fan/minor4.
2018-05-03 23:36:09 +08:00
Wenchen Fan 991b526992 [SPARK-24166][SQL] InMemoryTableScanExec should not access SQLConf at executor side
## What changes were proposed in this pull request?

This PR is extracted from https://github.com/apache/spark/pull/21190 , to make it easier to backport.

`InMemoryTableScanExec#createAndDecompressColumn` is executed inside `rdd.map`, we can't access `conf.offHeapColumnVectorEnabled` there.

## How was this patch tested?

it's tested in #21190

Author: Wenchen Fan <wenchen@databricks.com>

Closes #21223 from cloud-fan/minor1.
2018-05-03 19:56:30 +08:00
Wenchen Fan 417ad92502 [SPARK-23715][SQL] the input of to/from_utc_timestamp can not have timezone
## What changes were proposed in this pull request?

`from_utc_timestamp` assumes its input is in UTC timezone and shifts it to the specified timezone. When the timestamp contains timezone(e.g. `2018-03-13T06:18:23+00:00`), Spark breaks the semantic and respect the timezone in the string. This is not what user expects and the result is different from Hive/Impala. `to_utc_timestamp` has the same problem.

More details please refer to the JIRA ticket.

This PR fixes this by returning null if the input timestamp contains timezone.

## How was this patch tested?

new tests

Author: Wenchen Fan <wenchen@databricks.com>

Closes #21169 from cloud-fan/from_utc_timezone.
2018-05-03 19:27:01 +08:00
Dongjoon Hyun c9bfd1c6f8 [SPARK-23489][SQL][TEST] HiveExternalCatalogVersionsSuite should verify the downloaded file
## What changes were proposed in this pull request?

Although [SPARK-22654](https://issues.apache.org/jira/browse/SPARK-22654) made `HiveExternalCatalogVersionsSuite` download from Apache mirrors three times, it has been flaky because it didn't verify the downloaded file. Some Apache mirrors terminate the downloading abnormally, the *corrupted* file shows the following errors.

```
gzip: stdin: not in gzip format
tar: Child returned status 1
tar: Error is not recoverable: exiting now
22:46:32.700 WARN org.apache.spark.sql.hive.HiveExternalCatalogVersionsSuite:

===== POSSIBLE THREAD LEAK IN SUITE o.a.s.sql.hive.HiveExternalCatalogVersionsSuite, thread names: Keep-Alive-Timer =====

*** RUN ABORTED ***
  java.io.IOException: Cannot run program "./bin/spark-submit" (in directory "/tmp/test-spark/spark-2.2.0"): error=2, No such file or directory
```

This has been reported weirdly in two ways. For example, the above case is reported as Case 2 `no failures`.

- Case 1. [Test Result (1 failure / +1)](https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-sbt-hadoop-2.7/4389/)
- Case 2. [Test Result (no failures)](https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-maven-hadoop-2.6/4811/)

This PR aims to make `HiveExternalCatalogVersionsSuite` more robust by verifying the downloaded `tgz` file by extracting and checking the existence of `bin/spark-submit`. If it turns out that the file is empty or corrupted, `HiveExternalCatalogVersionsSuite` will do retry logic like the download failure.

## How was this patch tested?

Pass the Jenkins.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #21210 from dongjoon-hyun/SPARK-23489.
2018-05-03 15:15:05 +08:00
jerryshao bf4352ca6c [SPARK-24110][THRIFT-SERVER] Avoid UGI.loginUserFromKeytab in STS
## What changes were proposed in this pull request?

Spark ThriftServer will call UGI.loginUserFromKeytab twice in initialization. This is unnecessary and will cause various potential problems, like Hadoop IPC failure after 7 days, or RM failover issue and so on.

So here we need to remove all the unnecessary login logics and make sure UGI in the context never be created again.

Note this is actually a HS2 issue, If later on we upgrade supported Hive version, the issue may already be fixed in Hive side.

## How was this patch tested?

Local verification in secure cluster.

Author: jerryshao <sshao@hortonworks.com>

Closes #21178 from jerryshao/SPARK-24110.
2018-05-03 09:28:14 +08:00
Takeshi Yamamuro e4c91c089a [SPARK-24111][SQL] Add the TPCDS v2.7 (latest) queries in TPCDSQueryBenchmark
## What changes were proposed in this pull request?
This pr added  the TPCDS v2.7 (latest) queries in `TPCDSQueryBenchmark`.
These query files have been added in `SPARK-23167`.

## How was this patch tested?
Manually checked.

Author: Takeshi Yamamuro <yamamuro@apache.org>

Closes #21177 from maropu/AddTpcdsV2_7InBenchmark.
2018-05-02 16:12:21 -07:00
Kazuaki Ishizaki 5be8aab144 [SPARK-23923][SQL] Add cardinality function
## What changes were proposed in this pull request?

The PR adds the SQL function `cardinality`. The behavior of the function is based on Presto's one.

The function returns the length of the array or map stored in the column as `int` while the Presto version returns the value as `BigInt` (`long` in Spark). The discussions regarding the difference of return type are [here](https://github.com/apache/spark/pull/21031#issuecomment-381284638) and [there](https://github.com/apache/spark/pull/21031#discussion_r181622107).

## How was this patch tested?

Added UTs

Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com>

Closes #21031 from kiszk/SPARK-23923.
2018-05-02 13:53:10 -07:00
Marco Gaido 504c9cfd21 [SPARK-24123][SQL] Fix precision issues in monthsBetween with more than 8 digits
## What changes were proposed in this pull request?

SPARK-23902 introduced the ability to retrieve more than 8 digits in `monthsBetween`. Unfortunately, current implementation can cause precision loss in such a case. This was causing also a flaky UT.

This PR mirrors Hive's implementation in order to avoid precision loss also when more than 8 digits are returned.

## How was this patch tested?

running 10000000 times the flaky UT

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21196 from mgaido91/SPARK-24123.
2018-05-02 13:49:15 -07:00
Ala Luszczak 8bd27025b7 [SPARK-24133][SQL] Check for integer overflows when resizing WritableColumnVectors
## What changes were proposed in this pull request?

`ColumnVector`s store string data in one big byte array. Since the array size is capped at just under Integer.MAX_VALUE, a single `ColumnVector` cannot store more than 2GB of string data.
But since the Parquet files commonly contain large blobs stored as strings, and `ColumnVector`s by default carry 4096 values, it's entirely possible to go past that limit. In such cases a negative capacity is requested from `WritableColumnVector.reserve()`. The call succeeds (requested capacity is smaller than already allocated capacity), and consequently `java.lang.ArrayIndexOutOfBoundsException` is thrown when the reader actually attempts to put the data into the array.

This change introduces a simple check for integer overflow to `WritableColumnVector.reserve()` which should help catch the error earlier and provide more informative exception. Additionally, the error message in `WritableColumnVector.throwUnsupportedException()` was corrected, as it previously encouraged users to increase rather than reduce the batch size.

## How was this patch tested?

New units tests were added.

Author: Ala Luszczak <ala@databricks.com>

Closes #21206 from ala/overflow-reserve.
2018-05-02 12:43:19 -07:00
Marco Gaido 8dbf56c055 [SPARK-24013][SQL] Remove unneeded compress in ApproximatePercentile
## What changes were proposed in this pull request?

`ApproximatePercentile` contains a workaround logic to compress the samples since at the beginning `QuantileSummaries` was ignoring the compression threshold. This problem was fixed in SPARK-17439, but the workaround logic was not removed. So we are compressing the samples many more times than needed: this could lead to critical performance degradation.

This can create serious performance issues in queries like:
```
select approx_percentile(id, array(0.1)) from range(10000000)
```

## How was this patch tested?

added UT

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21133 from mgaido91/SPARK-24013.
2018-05-02 11:58:55 -07:00
wangyanlin01 7bbec0dced [SPARK-24061][SS] Add TypedFilter support for continuous processing
## What changes were proposed in this pull request?

Add TypedFilter support for continuous processing application.

## How was this patch tested?

unit tests

Author: wangyanlin01 <wangyanlin01@baidu.com>

Closes #21136 from yanlin-Lynn/SPARK-24061.
2018-05-01 16:22:52 +08:00
Wenchen Fan b42ad165bb [SPARK-24072][SQL] clearly define pushed filters
## What changes were proposed in this pull request?

filters like parquet row group filter, which is actually pushed to the data source but still to be evaluated by Spark, should also count as `pushedFilters`.

## How was this patch tested?

existing tests

Author: Wenchen Fan <wenchen@databricks.com>

Closes #21143 from cloud-fan/step1.
2018-04-30 09:13:32 -07:00
Maxim Gekk 3121b411f7 [SPARK-23846][SQL] The samplingRatio option for CSV datasource
## What changes were proposed in this pull request?

I propose to support the `samplingRatio` option for schema inferring of CSV datasource similar to the same option of JSON datasource:
b14993e1fc/sql/catalyst/src/main/scala/org/apache/spark/sql/catalyst/json/JSONOptions.scala (L49-L50)

## How was this patch tested?

Added 2 tests for json and 2 tests for csv datasources. The tests checks that only subset of input dataset is used for schema inferring.

Author: Maxim Gekk <maxim.gekk@databricks.com>
Author: Maxim Gekk <max.gekk@gmail.com>

Closes #20959 from MaxGekk/csv-sampling.
2018-04-30 09:45:22 +08:00
Maxim Gekk bd14da6fd5 [SPARK-23094][SPARK-23723][SPARK-23724][SQL] Support custom encoding for json files
## What changes were proposed in this pull request?

I propose new option for JSON datasource which allows to specify encoding (charset) of input and output files. Here is an example of using of the option:

```
spark.read.schema(schema)
  .option("multiline", "true")
  .option("encoding", "UTF-16LE")
  .json(fileName)
```

If the option is not specified, charset auto-detection mechanism is used by default.

The option can be used for saving datasets to jsons. Currently Spark is able to save datasets into json files in `UTF-8` charset only. The changes allow to save data in any supported charset. Here is the approximate list of supported charsets by Oracle Java SE: https://docs.oracle.com/javase/8/docs/technotes/guides/intl/encoding.doc.html . An user can specify the charset of output jsons via the charset option like `.option("charset", "UTF-16BE")`. By default the output charset is still `UTF-8` to keep backward compatibility.

The solution has the following restrictions for per-line mode (`multiline = false`):

- If charset is different from UTF-8, the lineSep option must be specified. The option required because Hadoop LineReader cannot detect the line separator correctly. Here is the ticket for solving the issue: https://issues.apache.org/jira/browse/SPARK-23725

- Encoding with [BOM](https://en.wikipedia.org/wiki/Byte_order_mark) are not supported. For example, the `UTF-16` and `UTF-32` encodings are blacklisted. The problem can be solved by https://github.com/MaxGekk/spark-1/pull/2

## How was this patch tested?

I added the following tests:
- reads an json file in `UTF-16LE` encoding with BOM in `multiline` mode
- read json file by using charset auto detection (`UTF-32BE` with BOM)
- read json file using of user's charset (`UTF-16LE`)
- saving in `UTF-32BE` and read the result by standard library (not by Spark)
- checking that default charset is `UTF-8`
- handling wrong (unsupported) charset

Author: Maxim Gekk <maxim.gekk@databricks.com>
Author: Maxim Gekk <max.gekk@gmail.com>

Closes #20937 from MaxGekk/json-encoding-line-sep.
2018-04-29 11:25:31 +08:00
Yuming Wang 4df51361a5 [SPARK-22732][SS][FOLLOW-UP] Fix MemorySinkV2 toString error
## What changes were proposed in this pull request?

Fix `MemorySinkV2` toString() error

## How was this patch tested?

N/A

Author: Yuming Wang <yumwang@ebay.com>

Closes #21170 from wangyum/SPARK-22732.
2018-04-28 16:57:41 +08:00
Marco Gaido ad94e8592b [SPARK-23736][SQL][FOLLOWUP] Error message should contains SQL types
## What changes were proposed in this pull request?

In the error messages we should return the SQL types (like `string` rather than the internal types like `StringType`).

## How was this patch tested?

added UT

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21181 from mgaido91/SPARK-23736_followup.
2018-04-28 10:47:43 +08:00
Jungtaek Lim 1fb46f30f8 [SPARK-23688][SS] Refactor tests away from rate source
## What changes were proposed in this pull request?

Replace rate source with memory source in continuous mode test suite. Keep using "rate" source if the tests intend to put data periodically in background, or need to put short source name to load, since "memory" doesn't have provider for source.

## How was this patch tested?

Ran relevant test suite from IDE.

Author: Jungtaek Lim <kabhwan@gmail.com>

Closes #21152 from HeartSaVioR/SPARK-23688.
2018-04-28 09:55:56 +08:00
Juliusz Sompolski 8614edd445 [SPARK-24104] SQLAppStatusListener overwrites metrics onDriverAccumUpdates instead of updating them
## What changes were proposed in this pull request?

Event `SparkListenerDriverAccumUpdates` may happen multiple times in a query - e.g. every `FileSourceScanExec` and `BroadcastExchangeExec` call `postDriverMetricUpdates`.
In Spark 2.2 `SQLListener` updated the map with new values. `SQLAppStatusListener` overwrites it.
Unless `update` preserved it in the KV store (dependant on `exec.lastWriteTime`), only the metrics from the last operator that does `postDriverMetricUpdates` are preserved.

## How was this patch tested?

Unit test added.

Author: Juliusz Sompolski <julek@databricks.com>

Closes #21171 from juliuszsompolski/SPARK-24104.
2018-04-27 14:14:28 -07:00
Dilip Biswal 3fd297af6d [SPARK-24085][SQL] Query returns UnsupportedOperationException when scalar subquery is present in partitioning expression
## What changes were proposed in this pull request?
In this case, the partition pruning happens before the planning phase of scalar subquery expressions.
For scalar subquery expressions, the planning occurs late in the cycle (after the physical planning)  in "PlanSubqueries" just before execution. Currently we try to execute the scalar subquery expression as part of partition pruning and fail as it implements Unevaluable.

The fix attempts to ignore the Subquery expressions from partition pruning computation. Another option can be to somehow plan the subqueries before the partition pruning. Since this may not be a commonly occuring expression, i am opting for a simpler fix.

Repro
``` SQL
CREATE TABLE test_prc_bug (
id_value string
)
partitioned by (id_type string)
location '/tmp/test_prc_bug'
stored as parquet;

insert into test_prc_bug values ('1','a');
insert into test_prc_bug values ('2','a');
insert into test_prc_bug values ('3','b');
insert into test_prc_bug values ('4','b');

select * from test_prc_bug
where id_type = (select 'b');
```
## How was this patch tested?
Added test in SubquerySuite and hive/SQLQuerySuite

Author: Dilip Biswal <dbiswal@us.ibm.com>

Closes #21174 from dilipbiswal/spark-24085.
2018-04-27 11:43:29 -07:00
Patrick McGloin 2824f12b8b [SPARK-23565][SS] New error message for structured streaming sources assertion
## What changes were proposed in this pull request?

A more informative message to tell you why a structured streaming query cannot continue if you have added more sources, than there are in the existing checkpoint offsets.

## How was this patch tested?

I added a Unit Test.

Author: Patrick McGloin <mcgloin.patrick@gmail.com>

Closes #20946 from patrickmcgloin/master.
2018-04-27 23:04:14 +08:00
Dongjoon Hyun 8aa1d7b0ed [SPARK-23355][SQL] convertMetastore should not ignore table properties
## What changes were proposed in this pull request?

Previously, SPARK-22158 fixed for `USING hive` syntax. This PR aims to fix for `STORED AS` syntax. Although the test case covers ORC part, the patch considers both `convertMetastoreOrc` and `convertMetastoreParquet`.

## How was this patch tested?

Pass newly added test cases.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #20522 from dongjoon-hyun/SPARK-22158-2.
2018-04-27 11:00:41 +08:00
gatorsmile ce2f919f8d [SPARK-23799][SQL][FOLLOW-UP] FilterEstimation.evaluateInSet produces wrong stats for STRING
## What changes were proposed in this pull request?
`colStat.min` AND `colStat.max` are empty for string type. Thus, `evaluateInSet` should not return zero when either `colStat.min` or `colStat.max`.

## How was this patch tested?
Added a test case.

Author: gatorsmile <gatorsmile@gmail.com>

Closes #21147 from gatorsmile/cached.
2018-04-26 19:07:13 +08:00
Tathagata Das d1eb8d3ddc [SPARK-24094][SS][MINOR] Change description strings of v2 streaming sources to reflect the change
## What changes were proposed in this pull request?

This makes it easy to understand at runtime which version is running. Great for debugging production issues.

## How was this patch tested?
Not necessary.

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #21160 from tdas/SPARK-24094.
2018-04-25 23:24:05 -07:00
Marco Gaido cd10f9df82 [SPARK-23916][SQL] Add array_join function
## What changes were proposed in this pull request?

The PR adds the SQL function `array_join`. The behavior of the function is based on Presto's one.

The function accepts an `array` of `string` which is to be joined, a `string` which is the delimiter to use between the items of the first argument and optionally a `string` which is used to replace `null` values.

## How was this patch tested?

added UTs

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21011 from mgaido91/SPARK-23916.
2018-04-26 13:37:13 +09:00
Marco Gaido 58c55cb4a6 [SPARK-23902][SQL] Add roundOff flag to months_between
## What changes were proposed in this pull request?

HIVE-15511 introduced the `roundOff` flag in order to disable the rounding to 8 digits which is performed in `months_between`. Since this can be a computational intensive operation, skipping it may improve performances when the rounding is not needed.

## How was this patch tested?

modified existing UT

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21008 from mgaido91/SPARK-23902.
2018-04-26 12:19:20 +09:00
Maxim Gekk 3f1e999d3d [SPARK-23849][SQL] Tests for samplingRatio of json datasource
## What changes were proposed in this pull request?

Added the `samplingRatio` option to the `json()` method of PySpark DataFrame Reader. Improving existing tests for Scala API according to review of the PR: https://github.com/apache/spark/pull/20959

## How was this patch tested?

Added new test for PySpark, updated 2 existing tests according to reviews of https://github.com/apache/spark/pull/20959 and added new negative test

Author: Maxim Gekk <maxim.gekk@databricks.com>

Closes #21056 from MaxGekk/json-sampling.
2018-04-26 09:14:24 +08:00
Wenchen Fan ac4ca7c4dd [SPARK-24012][SQL][TEST][FOLLOWUP] add unit test
## What changes were proposed in this pull request?

a followup of https://github.com/apache/spark/pull/21100

## How was this patch tested?

N/A

Author: Wenchen Fan <wenchen@databricks.com>

Closes #21154 from cloud-fan/test.
2018-04-25 13:42:44 -07:00
Tathagata Das 396938ef02 [SPARK-24050][SS] Calculate input / processing rates correctly for DataSourceV2 streaming sources
## What changes were proposed in this pull request?

In some streaming queries, the input and processing rates are not calculated at all (shows up as zero) because MicroBatchExecution fails to associated metrics from the executed plan of a trigger with the sources in the logical plan of the trigger. The way this executed-plan-leaf-to-logical-source attribution works is as follows. With V1 sources, there was no way to identify which execution plan leaves were generated by a streaming source. So did a best-effort attempt to match logical and execution plan leaves when the number of leaves were same. In cases where the number of leaves is different, we just give up and report zero rates. An example where this may happen is as follows.

```
val cachedStaticDF = someStaticDF.union(anotherStaticDF).cache()
val streamingInputDF = ...

val query = streamingInputDF.join(cachedStaticDF).writeStream....
```
In this case, the `cachedStaticDF` has multiple logical leaves, but in the trigger's execution plan it only has leaf because a cached subplan is represented as a single InMemoryTableScanExec leaf. This leads to a mismatch in the number of leaves causing the input rates to be computed as zero.

With DataSourceV2, all inputs are represented in the executed plan using `DataSourceV2ScanExec`, each of which has a reference to the associated logical `DataSource` and `DataSourceReader`. So its easy to associate the metrics to the original streaming sources.

In this PR, the solution is as follows. If all the streaming sources in a streaming query as v2 sources, then use a new code path where the execution-metrics-to-source mapping is done directly. Otherwise we fall back to existing mapping logic.

## How was this patch tested?
- New unit tests using V2 memory source
- Existing unit tests using V1 source

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #21126 from tdas/SPARK-24050.
2018-04-25 12:21:55 -07:00
Takeshi Yamamuro 20ca208bcd [SPARK-23880][SQL] Do not trigger any jobs for caching data
## What changes were proposed in this pull request?
This pr fixed code so that `cache` could prevent any jobs from being triggered.
For example, in the current master, an operation below triggers a actual job;
```
val df = spark.range(10000000000L)
  .filter('id > 1000)
  .orderBy('id.desc)
  .cache()
```
This triggers a job while the cache should be lazy. The problem is that, when creating `InMemoryRelation`, we build the RDD, which calls `SparkPlan.execute` and may trigger jobs, like sampling job for range partitioner, or broadcast job.

This pr removed the code to build a cached `RDD` in the constructor of `InMemoryRelation` and added `CachedRDDBuilder` to lazily build the `RDD` in `InMemoryRelation`. Then, the first call of `CachedRDDBuilder.cachedColumnBuffers` triggers a job to materialize the cache in  `InMemoryTableScanExec` .

## How was this patch tested?
Added tests in `CachedTableSuite`.

Author: Takeshi Yamamuro <yamamuro@apache.org>

Closes #21018 from maropu/SPARK-23880.
2018-04-25 19:06:18 +08:00
liutang123 64e8408e6f [SPARK-24012][SQL] Union of map and other compatible column
## What changes were proposed in this pull request?
Union of map and other compatible column result in unresolved operator 'Union; exception

Reproduction
`spark-sql>select map(1,2), 'str' union all select map(1,2,3,null), 1`
Output:
```
Error in query: unresolved operator 'Union;;
'Union
:- Project [map(1, 2) AS map(1, 2)#106, str AS str#107]
:  +- OneRowRelation$
+- Project [map(1, cast(2 as int), 3, cast(null as int)) AS map(1, CAST(2 AS INT), 3, CAST(NULL AS INT))#109, 1 AS 1#108]
   +- OneRowRelation$
```
So, we should cast part of columns to be compatible when appropriate.

## How was this patch tested?
Added a test (query union of map and other columns) to SQLQueryTestSuite's union.sql.

Author: liutang123 <liutang123@yeah.net>

Closes #21100 from liutang123/SPARK-24012.
2018-04-25 18:10:51 +08:00
mn-mikke 5fea17b3be [SPARK-23821][SQL] Collection function: flatten
## What changes were proposed in this pull request?

This PR adds a new collection function that transforms an array of arrays into a single array. The PR comprises:
- An expression for flattening array structure
- Flatten function
- A wrapper for PySpark

## How was this patch tested?

New tests added into:
- CollectionExpressionsSuite
- DataFrameFunctionsSuite

## Codegen examples
### Primitive type
```
val df = Seq(
  Seq(Seq(1, 2), Seq(4, 5)),
  Seq(null, Seq(1))
).toDF("i")
df.filter($"i".isNotNull || $"i".isNull).select(flatten($"i")).debugCodegen
```
Result:
```
/* 033 */         boolean inputadapter_isNull = inputadapter_row.isNullAt(0);
/* 034 */         ArrayData inputadapter_value = inputadapter_isNull ?
/* 035 */         null : (inputadapter_row.getArray(0));
/* 036 */
/* 037 */         boolean filter_value = true;
/* 038 */
/* 039 */         if (!(!inputadapter_isNull)) {
/* 040 */           filter_value = inputadapter_isNull;
/* 041 */         }
/* 042 */         if (!filter_value) continue;
/* 043 */
/* 044 */         ((org.apache.spark.sql.execution.metric.SQLMetric) references[0] /* numOutputRows */).add(1);
/* 045 */
/* 046 */         boolean project_isNull = inputadapter_isNull;
/* 047 */         ArrayData project_value = null;
/* 048 */
/* 049 */         if (!inputadapter_isNull) {
/* 050 */           for (int z = 0; !project_isNull && z < inputadapter_value.numElements(); z++) {
/* 051 */             project_isNull |= inputadapter_value.isNullAt(z);
/* 052 */           }
/* 053 */           if (!project_isNull) {
/* 054 */             long project_numElements = 0;
/* 055 */             for (int z = 0; z < inputadapter_value.numElements(); z++) {
/* 056 */               project_numElements += inputadapter_value.getArray(z).numElements();
/* 057 */             }
/* 058 */             if (project_numElements > 2147483632) {
/* 059 */               throw new RuntimeException("Unsuccessful try to flatten an array of arrays with " +
/* 060 */                 project_numElements + " elements due to exceeding the array size limit 2147483632.");
/* 061 */             }
/* 062 */
/* 063 */             long project_size = UnsafeArrayData.calculateSizeOfUnderlyingByteArray(
/* 064 */               project_numElements,
/* 065 */               4);
/* 066 */             if (project_size > 2147483632) {
/* 067 */               throw new RuntimeException("Unsuccessful try to flatten an array of arrays with " +
/* 068 */                 project_size + " bytes of data due to exceeding the limit 2147483632" +
/* 069 */                 " bytes for UnsafeArrayData.");
/* 070 */             }
/* 071 */
/* 072 */             byte[] project_array = new byte[(int)project_size];
/* 073 */             UnsafeArrayData project_tempArrayData = new UnsafeArrayData();
/* 074 */             Platform.putLong(project_array, 16, project_numElements);
/* 075 */             project_tempArrayData.pointTo(project_array, 16, (int)project_size);
/* 076 */             int project_counter = 0;
/* 077 */             for (int k = 0; k < inputadapter_value.numElements(); k++) {
/* 078 */               ArrayData arr = inputadapter_value.getArray(k);
/* 079 */               for (int l = 0; l < arr.numElements(); l++) {
/* 080 */                 if (arr.isNullAt(l)) {
/* 081 */                   project_tempArrayData.setNullAt(project_counter);
/* 082 */                 } else {
/* 083 */                   project_tempArrayData.setInt(
/* 084 */                     project_counter,
/* 085 */                     arr.getInt(l)
/* 086 */                   );
/* 087 */                 }
/* 088 */                 project_counter++;
/* 089 */               }
/* 090 */             }
/* 091 */             project_value = project_tempArrayData;
/* 092 */
/* 093 */           }
/* 094 */
/* 095 */         }
```
### Non-primitive type
```
val df = Seq(
  Seq(Seq("a", "b"), Seq(null, "d")),
  Seq(null, Seq("a"))
).toDF("s")
df.filter($"s".isNotNull || $"s".isNull).select(flatten($"s")).debugCodegen
```
Result:
```
/* 033 */         boolean inputadapter_isNull = inputadapter_row.isNullAt(0);
/* 034 */         ArrayData inputadapter_value = inputadapter_isNull ?
/* 035 */         null : (inputadapter_row.getArray(0));
/* 036 */
/* 037 */         boolean filter_value = true;
/* 038 */
/* 039 */         if (!(!inputadapter_isNull)) {
/* 040 */           filter_value = inputadapter_isNull;
/* 041 */         }
/* 042 */         if (!filter_value) continue;
/* 043 */
/* 044 */         ((org.apache.spark.sql.execution.metric.SQLMetric) references[0] /* numOutputRows */).add(1);
/* 045 */
/* 046 */         boolean project_isNull = inputadapter_isNull;
/* 047 */         ArrayData project_value = null;
/* 048 */
/* 049 */         if (!inputadapter_isNull) {
/* 050 */           for (int z = 0; !project_isNull && z < inputadapter_value.numElements(); z++) {
/* 051 */             project_isNull |= inputadapter_value.isNullAt(z);
/* 052 */           }
/* 053 */           if (!project_isNull) {
/* 054 */             long project_numElements = 0;
/* 055 */             for (int z = 0; z < inputadapter_value.numElements(); z++) {
/* 056 */               project_numElements += inputadapter_value.getArray(z).numElements();
/* 057 */             }
/* 058 */             if (project_numElements > 2147483632) {
/* 059 */               throw new RuntimeException("Unsuccessful try to flatten an array of arrays with " +
/* 060 */                 project_numElements + " elements due to exceeding the array size limit 2147483632.");
/* 061 */             }
/* 062 */
/* 063 */             Object[] project_arrayObject = new Object[(int)project_numElements];
/* 064 */             int project_counter = 0;
/* 065 */             for (int k = 0; k < inputadapter_value.numElements(); k++) {
/* 066 */               ArrayData arr = inputadapter_value.getArray(k);
/* 067 */               for (int l = 0; l < arr.numElements(); l++) {
/* 068 */                 project_arrayObject[project_counter] = arr.getUTF8String(l);
/* 069 */                 project_counter++;
/* 070 */               }
/* 071 */             }
/* 072 */             project_value = new org.apache.spark.sql.catalyst.util.GenericArrayData(project_arrayObject);
/* 073 */
/* 074 */           }
/* 075 */
/* 076 */         }
```

Author: mn-mikke <mrkAha12346github>

Closes #20938 from mn-mikke/feature/array-api-flatten-to-master.
2018-04-25 11:19:08 +09:00
Jose Torres d6c26d1c9a [SPARK-24038][SS] Refactor continuous writing to its own class
## What changes were proposed in this pull request?

Refactor continuous writing to its own class.

See WIP https://github.com/jose-torres/spark/pull/13 for the overall direction this is going, but I think this PR is very isolated and necessary anyway.

## How was this patch tested?

existing unit tests - refactoring only

Author: Jose Torres <torres.joseph.f+github@gmail.com>

Closes #21116 from jose-torres/SPARK-24038.
2018-04-24 17:06:03 -07:00
Takeshi Yamamuro 4926a7c2f0 [SPARK-23589][SQL][FOLLOW-UP] Reuse InternalRow in ExternalMapToCatalyst eval
## What changes were proposed in this pull request?
This pr is a follow-up of #20980 and fixes code to reuse `InternalRow` for converting input keys/values in `ExternalMapToCatalyst` eval.

## How was this patch tested?
Existing tests.

Author: Takeshi Yamamuro <yamamuro@apache.org>

Closes #21137 from maropu/SPARK-23589-FOLLOWUP.
2018-04-24 17:52:05 +02:00
seancxmao c303b1b676 [MINOR][DOCS] Fix comments of SQLExecution#withExecutionId
## What changes were proposed in this pull request?
Fix comment. Change `BroadcastHashJoin.broadcastFuture` to `BroadcastExchangeExec.relationFuture`: d28d5732ae/sql/core/src/main/scala/org/apache/spark/sql/execution/exchange/BroadcastExchangeExec.scala (L66)

## How was this patch tested?
N/A

Author: seancxmao <seancxmao@gmail.com>

Closes #21113 from seancxmao/SPARK-13136.
2018-04-24 16:16:07 +08:00
Marco Gaido 281c1ca0dc [SPARK-23973][SQL] Remove consecutive Sorts
## What changes were proposed in this pull request?

In SPARK-23375 we introduced the ability of removing `Sort` operation during query optimization if the data is already sorted. In this follow-up we remove also a `Sort` which is followed by another `Sort`: in this case the first sort is not needed and can be safely removed.

The PR starts from henryr's comment: https://github.com/apache/spark/pull/20560#discussion_r180601594. So credit should be given to him.

## How was this patch tested?

added UT

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21072 from mgaido91/SPARK-23973.
2018-04-24 10:11:09 +08:00
Tathagata Das 770add81c3 [SPARK-23004][SS] Ensure StateStore.commit is called only once in a streaming aggregation task
## What changes were proposed in this pull request?

A structured streaming query with a streaming aggregation can throw the following error in rare cases. 

```
java.lang.IllegalStateException: Cannot commit after already committed or aborted
	at org.apache.spark.sql.execution.streaming.state.HDFSBackedStateStoreProvider.org$apache$spark$sql$execution$streaming$state$HDFSBackedStateStoreProvider$$verify(HDFSBackedStateStoreProvider.scala:643)
	at org.apache.spark.sql.execution.streaming.state.HDFSBackedStateStoreProvider$HDFSBackedStateStore.commit(HDFSBackedStateStoreProvider.scala:135)
	at org.apache.spark.sql.execution.streaming.StateStoreSaveExec$$anonfun$doExecute$3$$anon$2$$anonfun$hasNext$2.apply$mcV$sp(statefulOperators.scala:359)
	at org.apache.spark.sql.execution.streaming.StateStoreWriter$class.timeTakenMs(statefulOperators.scala:102)
	at org.apache.spark.sql.execution.streaming.StateStoreSaveExec.timeTakenMs(statefulOperators.scala:251)
	at org.apache.spark.sql.execution.streaming.StateStoreSaveExec$$anonfun$doExecute$3$$anon$2.hasNext(statefulOperators.scala:359)
	at org.apache.spark.sql.execution.aggregate.ObjectAggregationIterator.processInputs(ObjectAggregationIterator.scala:188)
	at org.apache.spark.sql.execution.aggregate.ObjectAggregationIterator.<init>(ObjectAggregationIterator.scala:78)
	at org.apache.spark.sql.execution.aggregate.ObjectHashAggregateExec$$anonfun$doExecute$1$$anonfun$2.apply(ObjectHashAggregateExec.scala:114)
	at org.apache.spark.sql.execution.aggregate.ObjectHashAggregateExec$$anonfun$doExecute$1$$anonfun$2.apply(ObjectHashAggregateExec.scala:105)
	at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsWithIndexInternal$1$$anonfun$apply$24.apply(RDD.scala:830)
	at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsWithIndexInternal$1$$anonfun$apply$24.apply(RDD.scala:830)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:42)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:336)
```

This can happen when the following conditions are accidentally hit. 
 - Streaming aggregation with aggregation function that is a subset of [`TypedImperativeAggregation`](76b8b840dd/sql/catalyst/src/main/scala/org/apache/spark/sql/catalyst/expressions/aggregate/interfaces.scala (L473)) (for example, `collect_set`, `collect_list`, `percentile`, etc.). 
 - Query running in `update}` mode
 - After the shuffle, a partition has exactly 128 records. 

This causes StateStore.commit to be called twice. See the [JIRA](https://issues.apache.org/jira/browse/SPARK-23004) for a more detailed explanation. The solution is to use `NextIterator` or `CompletionIterator`, each of which has a flag to prevent the "onCompletion" task from being called more than once. In this PR, I chose to implement using `NextIterator`.

## How was this patch tested?

Added unit test that I have confirm will fail without the fix.

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #21124 from tdas/SPARK-23004.
2018-04-23 13:20:32 -07:00
Takeshi Yamamuro afbdf42730 [SPARK-23589][SQL] ExternalMapToCatalyst should support interpreted execution
## What changes were proposed in this pull request?
This pr supported interpreted mode for `ExternalMapToCatalyst`.

## How was this patch tested?
Added tests in `ObjectExpressionsSuite`.

Author: Takeshi Yamamuro <yamamuro@apache.org>

Closes #20980 from maropu/SPARK-23589.
2018-04-23 14:28:28 +02:00
Wenchen Fan d87d30e4fe [SPARK-23564][SQL] infer additional filters from constraints for join's children
## What changes were proposed in this pull request?

The existing query constraints framework has 2 steps:
1. propagate constraints bottom up.
2. use constraints to infer additional filters for better data pruning.

For step 2, it mostly helps with Join, because we can connect the constraints from children to the join condition and infer powerful filters to prune the data of the join sides. e.g., the left side has constraints `a = 1`, the join condition is `left.a = right.a`, then we can infer `right.a = 1` to the right side and prune the right side a lot.

However, the current logic of inferring filters from constraints for Join is pretty weak. It infers the filters from Join's constraints. Some joins like left semi/anti exclude output from right side and the right side constraints will be lost here.

This PR propose to check the left and right constraints individually, expand the constraints with join condition and add filters to children of join directly, instead of adding to the join condition.

This reverts https://github.com/apache/spark/pull/20670 , covers https://github.com/apache/spark/pull/20717 and https://github.com/apache/spark/pull/20816

This is inspired by the original PRs and the tests are all from these PRs. Thanks to the authors mgaido91 maryannxue KaiXinXiaoLei !

## How was this patch tested?

new tests

Author: Wenchen Fan <wenchen@databricks.com>

Closes #21083 from cloud-fan/join.
2018-04-23 20:21:01 +08:00
Wenchen Fan f70f46d1e5 [SPARK-23877][SQL][FOLLOWUP] use PhysicalOperation to simplify the handling of Project and Filter over partitioned relation
## What changes were proposed in this pull request?

A followup of https://github.com/apache/spark/pull/20988

`PhysicalOperation` can collect Project and Filters over a certain plan and substitute the alias with the original attributes in the bottom plan. We can use it in `OptimizeMetadataOnlyQuery` rule to handle the Project and Filter over partitioned relation.

## How was this patch tested?

existing test

Author: Wenchen Fan <wenchen@databricks.com>

Closes #21111 from cloud-fan/refactor.
2018-04-23 20:18:50 +08:00
Mykhailo Shtelma c48085aa91 [SPARK-23799][SQL] FilterEstimation.evaluateInSet produces devision by zero in a case of empty table with analyzed statistics
>What changes were proposed in this pull request?

During evaluation of IN conditions, if the source data frame, is represented by a plan, that uses hive table with columns, which were previously analysed, and the plan has conditions for these fields, that cannot be satisfied (which leads us to an empty data frame), FilterEstimation.evaluateInSet method produces NumberFormatException and ClassCastException.
In order to fix this bug, method FilterEstimation.evaluateInSet at first checks, if distinct count is not zero, and also checks if colStat.min and colStat.max  are defined, and only in this case proceeds with the calculation. If at least one of the conditions is not satisfied, zero is returned.

>How was this patch tested?

In order to test the PR two tests were implemented: one in FilterEstimationSuite, that tests the plan with the statistics that violates the conditions mentioned above,  and another one in StatisticsCollectionSuite, that test the whole process of analysis/optimisation of the query, that leads to the problems, mentioned in the first section.

Author: Mykhailo Shtelma <mykhailo.shtelma@bearingpoint.com>
Author: smikesh <mshtelma@gmail.com>

Closes #21052 from mshtelma/filter_estimation_evaluateInSet_Bugs.
2018-04-21 23:33:57 -07:00
gatorsmile 7bc853d089 [SPARK-24033][SQL] Fix Mismatched of Window Frame specifiedwindowframe(RowFrame, -1, -1)
## What changes were proposed in this pull request?

When the OffsetWindowFunction's frame is `UnaryMinus(Literal(1))` but the specified window frame has been simplified to `Literal(-1)` by some optimizer rules e.g., `ConstantFolding`. Thus, they do not match and cause the following error:
```
org.apache.spark.sql.AnalysisException: Window Frame specifiedwindowframe(RowFrame, -1, -1) must match the required frame specifiedwindowframe(RowFrame, -1, -1);
at org.apache.spark.sql.catalyst.analysis.CheckAnalysis$class.failAnalysis(CheckAnalysis.scala:41)
at org.apache.spark.sql.catalyst.analysis.Analyzer.failAnalysis(Analyzer.scala:91)
at
```
## How was this patch tested?
Added a test

Author: gatorsmile <gatorsmile@gmail.com>

Closes #21115 from gatorsmile/fixLag.
2018-04-21 10:45:12 -07:00
Marcelo Vanzin 1d758dc73b Revert "[SPARK-23775][TEST] Make DataFrameRangeSuite not flaky"
This reverts commit 0c94e48bc5.
2018-04-20 10:23:01 -07:00