## What changes were proposed in this pull request?
Currently, `JDBCRDD.compute` is doing type dispatch for each row to read appropriate values.
It might not have to be done like this because the schema is already kept in `JDBCRDD`.
So, appropriate converters can be created first according to the schema, and then apply them to each row.
## How was this patch tested?
Existing tests should cover this.
Author: hyukjinkwon <gurwls223@gmail.com>
Closes#14313 from HyukjinKwon/SPARK-16674.
In the following code in `VectorizedHashMapGenerator.scala`:
```
def hashBytes(b: String): String = {
val hash = ctx.freshName("hash")
s"""
|int $result = 0;
|for (int i = 0; i < $b.length; i++) {
| ${genComputeHash(ctx, s"$b[i]", ByteType, hash)}
| $result = ($result ^ (0x9e3779b9)) + $hash + ($result << 6) + ($result >>> 2);
|}
""".stripMargin
}
```
when b=input.getBytes(), the current 2.0 code results in getBytes() being called n times, n being length of input. getBytes() involves memory copy is thus expensive and causes a performance degradation.
Fix is to evaluate getBytes() before the for loop.
Performance bug, no additional test added.
Author: Qifan Pu <qifan.pu@gmail.com>
Closes#14337 from ooq/SPARK-16699.
(cherry picked from commit d226dce12b)
Signed-off-by: Reynold Xin <rxin@databricks.com>
## What changes were proposed in this pull request?
we also store data source table options in this field, it's unreasonable to call it `serdeProperties`.
## How was this patch tested?
N/A
Author: Wenchen Fan <wenchen@databricks.com>
Closes#14283 from cloud-fan/minor1.
## What changes were proposed in this pull request?
This PR adds a boolean option, `truncate`, for `SaveMode.Overwrite` of JDBC DataFrameWriter. If this option is `true`, it try to take advantage of `TRUNCATE TABLE` instead of `DROP TABLE`. This is a trivial option, but will provide great **convenience** for BI tool users based on RDBMS tables generated by Spark.
**Goal**
- Without `CREATE/DROP` privilege, we can save dataframe to database. Sometime these are not allowed for security.
- It will preserve the existing table information, so users can add and keep some additional `INDEX` and `CONSTRAINT`s for the table.
- Sometime, `TRUNCATE` is faster than the combination of `DROP/CREATE`.
**Supported DBMS**
The following is `truncate`-option support table. Due to the different behavior of `TRUNCATE TABLE` among DBMSs, it's not always safe to use `TRUNCATE TABLE`. Spark will ignore the `truncate` option for **unknown** and **some** DBMS with **default CASCADING** behavior. Newly added JDBCDialect should implement corresponding function to support `truncate` option additionally.
Spark Dialects | `truncate` OPTION SUPPORT
---------------|-------------------------------
MySQLDialect | O
PostgresDialect | X
DB2Dialect | O
MsSqlServerDialect | O
DerbyDialect | O
OracleDialect | O
**Before (TABLE with INDEX case)**: SparkShell & MySQL CLI are interleaved intentionally.
```scala
scala> val (url, prop)=("jdbc:mysql://localhost:3306/temp?useSSL=false", new java.util.Properties)
scala> prop.setProperty("user","root")
scala> df.write.mode("overwrite").jdbc(url, "table_with_index", prop)
scala> spark.range(10).write.mode("overwrite").jdbc(url, "table_with_index", prop)
mysql> DESC table_with_index;
+-------+------------+------+-----+---------+-------+
| Field | Type | Null | Key | Default | Extra |
+-------+------------+------+-----+---------+-------+
| id | bigint(20) | NO | | NULL | |
+-------+------------+------+-----+---------+-------+
mysql> CREATE UNIQUE INDEX idx_id ON table_with_index(id);
mysql> DESC table_with_index;
+-------+------------+------+-----+---------+-------+
| Field | Type | Null | Key | Default | Extra |
+-------+------------+------+-----+---------+-------+
| id | bigint(20) | NO | PRI | NULL | |
+-------+------------+------+-----+---------+-------+
scala> spark.range(10).write.mode("overwrite").jdbc(url, "table_with_index", prop)
mysql> DESC table_with_index;
+-------+------------+------+-----+---------+-------+
| Field | Type | Null | Key | Default | Extra |
+-------+------------+------+-----+---------+-------+
| id | bigint(20) | NO | | NULL | |
+-------+------------+------+-----+---------+-------+
```
**After (TABLE with INDEX case)**
```scala
scala> spark.range(10).write.mode("overwrite").option("truncate", true).jdbc(url, "table_with_index", prop)
mysql> DESC table_with_index;
+-------+------------+------+-----+---------+-------+
| Field | Type | Null | Key | Default | Extra |
+-------+------------+------+-----+---------+-------+
| id | bigint(20) | NO | PRI | NULL | |
+-------+------------+------+-----+---------+-------+
```
**Error Handling**
- In case of exceptions, Spark will not retry. Users should turn off the `truncate` option.
- In case of schema change:
- If one of the column names changes, this will raise exceptions intuitively.
- If there exists only type difference, this will work like Append mode.
## How was this patch tested?
Pass the Jenkins tests with a updated testcase.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#14086 from dongjoon-hyun/SPARK-16410.
### What changes were proposed in this pull request?
**Issue 1: Silent Ignorance of Bucket Specification When Creating Table Using Schema Inference**
When creating a data source table without explicit specification of schema or SELECT clause, we silently ignore the bucket specification (CLUSTERED BY... SORTED BY...) in [the code](ce3b98bae2/sql/core/src/main/scala/org/apache/spark/sql/execution/command/createDataSourceTables.scala (L339-L354)).
For example,
```SQL
CREATE TABLE jsonTable
USING org.apache.spark.sql.json
OPTIONS (
path '${tempDir.getCanonicalPath}'
)
CLUSTERED BY (inexistentColumnA) SORTED BY (inexistentColumnB) INTO 2 BUCKETS
```
This PR captures it and issues an error message.
**Issue 2: Got a run-time `java.lang.ArithmeticException` when num of buckets is set to zero.**
For example,
```SQL
CREATE TABLE t USING PARQUET
OPTIONS (PATH '${path.toString}')
CLUSTERED BY (a) SORTED BY (b) INTO 0 BUCKETS
AS SELECT 1 AS a, 2 AS b
```
The exception we got is
```
ERROR org.apache.spark.executor.Executor: Exception in task 0.0 in stage 1.0 (TID 2)
java.lang.ArithmeticException: / by zero
```
This PR captures the misuse and issues an appropriate error message.
### How was this patch tested?
Added a test case in DDLSuite
Author: gatorsmile <gatorsmile@gmail.com>
Closes#14210 from gatorsmile/createTableWithoutSchema.
## What changes were proposed in this pull request?
As part of the bugfix in https://github.com/apache/spark/pull/12279, if a row batch consist of both dictionary encoded and non-dictionary encoded pages, we explicitly decode the dictionary for the values that are already dictionary encoded. Currently we reset the dictionary while reading every page that can potentially cause ` java.lang.ArrayIndexOutOfBoundsException` while decoding older pages. This patch fixes the problem by maintaining a single dictionary per row-batch in vectorized parquet reader.
## How was this patch tested?
Manual Tests against a number of hand-generated parquet files.
Author: Sameer Agarwal <sameerag@cs.berkeley.edu>
Closes#14225 from sameeragarwal/vectorized.
## What changes were proposed in this pull request?
PR #14278 is a more general and simpler fix for SPARK-16632 than PR #14272. After merging #14278, we no longer need changes made in #14272. So here I revert them.
This PR targets both master and branch-2.0.
## How was this patch tested?
Existing tests.
Author: Cheng Lian <lian@databricks.com>
Closes#14300 from liancheng/revert-pr-14272.
## What changes were proposed in this pull request?
In `SpecificParquetRecordReaderBase`, which is used by the vectorized Parquet reader, we convert the Parquet requested schema into a Spark schema to guide column reader initialization. However, the Parquet requested schema is tailored from the schema of the physical file being scanned, and may have inaccurate type information due to bugs of other systems (e.g. HIVE-14294).
On the other hand, we already set the real Spark requested schema into Hadoop configuration in [`ParquetFileFormat`][1]. This PR simply reads out this schema to replace the converted one.
## How was this patch tested?
New test case added in `ParquetQuerySuite`.
[1]: https://github.com/apache/spark/blob/v2.0.0-rc5/sql/core/src/main/scala/org/apache/spark/sql/execution/datasources/parquet/ParquetFileFormat.scala#L292-L294
Author: Cheng Lian <lian@databricks.com>
Closes#14278 from liancheng/spark-16632-simpler-fix.
## What changes were proposed in this pull request?
Saving partitions to JDBC in transaction can use a weaker transaction isolation level to reduce locking. Use better method to check if transactions are supported.
## How was this patch tested?
Existing Jenkins tests.
Author: Sean Owen <sowen@cloudera.com>
Closes#14054 from srowen/SPARK-16226.
This allows configuration to be more flexible, for example, when the cluster does
not have a homogeneous configuration (e.g. packages are installed on different
paths in different nodes). By allowing one to reference the environment from
the conf, it becomes possible to work around those in certain cases.
As part of the implementation, ConfigEntry now keeps track of all "known" configs
(i.e. those created through the use of ConfigBuilder), since that list is used
by the resolution code. This duplicates some code in SQLConf, which could potentially
be merged with this now. It will also make it simpler to implement some missing
features such as filtering which configs show up in the UI or in event logs - which
are not part of this change.
Another change is in the way ConfigEntry reads config data; it now takes a string
map and a function that reads env variables, so that it can be called both from
SparkConf and SQLConf. This makes it so both places follow the same read path,
instead of having to replicate certain logic in SQLConf. There are still a
couple of methods in SQLConf that peek into fields of ConfigEntry directly,
though.
Tested via unit tests, and by using the new variable expansion functionality
in a shell session with a custom spark.sql.hive.metastore.jars value.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#14022 from vanzin/SPARK-16272.
## What changes were proposed in this pull request?
Due to backward-compatibility reasons, the following Parquet schema is ambiguous:
```
optional group f (LIST) {
repeated group list {
optional group element {
optional int32 element;
}
}
}
```
According to the parquet-format spec, when interpreted as a standard 3-level layout, this type is equivalent to the following SQL type:
```
ARRAY<STRUCT<element: INT>>
```
However, when interpreted as a legacy 2-level layout, it's equivalent to
```
ARRAY<STRUCT<element: STRUCT<element: INT>>>
```
Historically, to disambiguate these cases, we employed two methods:
- `ParquetSchemaConverter.isElementType()`
Used to disambiguate the above cases while converting Parquet types to Spark types.
- `ParquetRowConverter.isElementType()`
Used to disambiguate the above cases while instantiating row converters that convert Parquet records to Spark rows.
Unfortunately, these two methods make different decision about the above problematic Parquet type, and caused SPARK-16344.
`ParquetRowConverter.isElementType()` is necessary for Spark 1.4 and earlier versions because Parquet requested schemata are directly converted from Spark schemata in these versions. The converted Parquet schemata may be incompatible with actual schemata of the underlying physical files when the files are written by a system/library that uses a schema conversion scheme that is different from Spark when writing Parquet LIST and MAP fields.
In Spark 1.5, Parquet requested schemata are always properly tailored from schemata of physical files to be read. Thus `ParquetRowConverter.isElementType()` is no longer necessary. This PR replaces this method with a simply yet accurate scheme: whenever an ambiguous Parquet type is hit, convert the type in question back to a Spark type using `ParquetSchemaConverter` and check whether it matches the corresponding Spark type.
## How was this patch tested?
New test cases added in `ParquetHiveCompatibilitySuite` and `ParquetQuerySuite`.
Author: Cheng Lian <lian@databricks.com>
Closes#14014 from liancheng/spark-16344-for-master-and-2.0.
When Hive (or at least certain versions of Hive) creates parquet files
containing tinyint or smallint columns, it stores them as int32, but
doesn't annotate the parquet field as containing the corresponding
int8 / int16 data. When Spark reads those files using the vectorized
reader, it follows the parquet schema for these fields, but when
actually reading the data it tries to use the type fetched from
the metastore, and then fails because data has been loaded into the
wrong fields in OnHeapColumnVector.
So instead of blindly trusting the parquet schema, check whether the
Catalyst-provided schema disagrees with it, and adjust the types so
that the necessary metadata is present when loading the data into
the ColumnVector instance.
Tested with unit tests and with tests that create byte / short columns
in Hive and try to read them from Spark.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#14272 from vanzin/SPARK-16632.
## What changes were proposed in this pull request?
In ScriptInputOutputSchema, we read default RecordReader and RecordWriter from conf. Since Spark 2.0 has deleted those config keys from hive conf, we have to set default reader/writer class name by ourselves. Otherwise we will get None for LazySimpleSerde, the data written would not be able to read by script. The test case added worked fine with previous version of Spark, but would fail now.
## How was this patch tested?
added a test case in SQLQuerySuite.
Closes#14169
Author: Daoyuan Wang <daoyuan.wang@intel.com>
Author: Yin Huai <yhuai@databricks.com>
Closes#14249 from yhuai/scriptTransformation.
## What changes were proposed in this pull request?
Currently, `JacksonGenerator.apply` is doing type-based dispatch for each row to write appropriate values.
It might not have to be done like this because the schema is already kept.
So, appropriate writers can be created first according to the schema once, and then apply them to each row. This approach is similar with `CatalystWriteSupport`.
This PR corrects `JacksonGenerator` so that it creates all writers for the schema once and then applies them to each row rather than type dispatching for every row.
Benchmark was proceeded with the codes below:
```scala
test("Benchmark for JSON writer") {
val N = 500 << 8
val row =
"""{"struct":{"field1": true, "field2": 92233720368547758070},
"structWithArrayFields":{"field1":[4, 5, 6], "field2":["str1", "str2"]},
"arrayOfString":["str1", "str2"],
"arrayOfInteger":[1, 2147483647, -2147483648],
"arrayOfLong":[21474836470, 9223372036854775807, -9223372036854775808],
"arrayOfBigInteger":[922337203685477580700, -922337203685477580800],
"arrayOfDouble":[1.2, 1.7976931348623157E308, 4.9E-324, 2.2250738585072014E-308],
"arrayOfBoolean":[true, false, true],
"arrayOfNull":[null, null, null, null],
"arrayOfStruct":[{"field1": true, "field2": "str1"}, {"field1": false}, {"field3": null}],
"arrayOfArray1":[[1, 2, 3], ["str1", "str2"]],
"arrayOfArray2":[[1, 2, 3], [1.1, 2.1, 3.1]]
}"""
val df = spark.sqlContext.read.json(spark.sparkContext.parallelize(List.fill(N)(row)))
val benchmark = new Benchmark("JSON writer", N)
benchmark.addCase("writing JSON file", 10) { _ =>
withTempPath { path =>
df.write.format("json").save(path.getCanonicalPath)
}
}
benchmark.run()
}
```
This produced the results below
- **Before**
```
JSON writer: Best/Avg Time(ms) Rate(M/s) Per Row(ns) Relative
------------------------------------------------------------------------------------------------
writing JSON file 1675 / 1767 0.1 13087.5 1.0X
```
- **After**
```
JSON writer: Best/Avg Time(ms) Rate(M/s) Per Row(ns) Relative
------------------------------------------------------------------------------------------------
writing JSON file 1597 / 1686 0.1 12477.1 1.0X
```
In addition, I ran this benchmark 10 times for each and calculated the average elapsed time as below:
| **Before** | **After**|
|---------------|------------|
|17478ms |16669ms |
It seems roughly ~5% is improved.
## How was this patch tested?
Existing tests should cover this.
Author: hyukjinkwon <gurwls223@gmail.com>
Closes#14028 from HyukjinKwon/SPARK-16351.
## What changes were proposed in this pull request?
This PR changes the name of columns returned by `SHOW PARTITION` and `SHOW COLUMNS` commands. Currently, both commands uses `result` as a column name.
**Comparison: Column Name**
Command|Spark(Before)|Spark(After)|Hive
----------|--------------|------------|-----
SHOW PARTITIONS|result|partition|partition
SHOW COLUMNS|result|col_name|field
Note that Spark/Hive uses `col_name` in `DESC TABLES`. So, this PR chooses `col_name` for consistency among Spark commands.
**Before**
```scala
scala> sql("show partitions p").show()
+------+
|result|
+------+
| b=2|
+------+
scala> sql("show columns in p").show()
+------+
|result|
+------+
| a|
| b|
+------+
```
**After**
```scala
scala> sql("show partitions p").show
+---------+
|partition|
+---------+
| b=2|
+---------+
scala> sql("show columns in p").show
+--------+
|col_name|
+--------+
| a|
| b|
+--------+
```
## How was this patch tested?
Manual.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#14199 from dongjoon-hyun/SPARK-16543.
## What changes were proposed in this pull request?
This patch enables SparkSession to provide spark version.
## How was this patch tested?
Manual test:
```
scala> sc.version
res0: String = 2.1.0-SNAPSHOT
scala> spark.version
res1: String = 2.1.0-SNAPSHOT
```
```
>>> sc.version
u'2.1.0-SNAPSHOT'
>>> spark.version
u'2.1.0-SNAPSHOT'
```
Author: Liwei Lin <lwlin7@gmail.com>
Closes#14165 from lw-lin/add-version.
#### What changes were proposed in this pull request?
If we create a table pointing to a parquet/json datasets without specifying the schema, describe table command does not show the schema at all. It only shows `# Schema of this table is inferred at runtime`. In 1.6, describe table does show the schema of such a table.
~~For data source tables, to infer the schema, we need to load the data source tables at runtime. Thus, this PR calls the function `lookupRelation`.~~
For data source tables, we infer the schema before table creation. Thus, this PR set the inferred schema as the table schema when table creation.
#### How was this patch tested?
Added test cases
Author: gatorsmile <gatorsmile@gmail.com>
Closes#14148 from gatorsmile/describeSchema.
## What changes were proposed in this pull request?
Fix Java style errors and remove unused imports, which are randomly found
## How was this patch tested?
Tested on my local machine.
Author: Xin Ren <iamshrek@126.com>
Closes#14161 from keypointt/SPARK-16437.
This option is used by Hive to directly delete the files instead of
moving them to the trash. This is needed in certain configurations
where moving the files does not work. For non-Hive tables and partitions,
Spark already behaves as if the PURGE option was set, so there's no
need to do anything.
Hive support for PURGE was added in 0.14 (for tables) and 1.2 (for
partitions), so the code reflects that: trying to use the option with
older versions of Hive will cause an exception to be thrown.
The change is a little noisier than I would like, because of the code
to propagate the new flag through all the interfaces and implementations;
the main changes are in the parser and in HiveShim, aside from the tests
(DDLCommandSuite, VersionsSuite).
Tested by running sql and catalyst unit tests, plus VersionsSuite which
has been updated to test the version-specific behavior. I also ran an
internal test suite that uses PURGE and would not pass previously.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#13831 from vanzin/SPARK-16119.
## What changes were proposed in this pull request?
when query only use metadata (example: partition key), it can return results based on metadata without scanning files. Hive did it in HIVE-1003.
## How was this patch tested?
add unit tests
Author: Lianhui Wang <lianhuiwang09@gmail.com>
Author: Wenchen Fan <wenchen@databricks.com>
Author: Lianhui Wang <lianhuiwang@users.noreply.github.com>
Closes#13494 from lianhuiwang/metadata-only.
## What changes were proposed in this pull request?
Currently the input `RDD` of `Dataset` is always serialized to `RDD[InternalRow]` prior to being as `Dataset`, but there is a case that we use `map` or `mapPartitions` just after converted to `Dataset`.
In this case, serialize and then deserialize happens but it would not be needed.
This pr adds `ExistingRDD` logical plan for input with `RDD` to have a chance to eliminate serialize/deserialize.
## How was this patch tested?
Existing tests.
Author: Takuya UESHIN <ueshin@happy-camper.st>
Closes#13890 from ueshin/issues/SPARK-16189.
## What changes were proposed in this pull request?
It would be useful to support listing the columns that are referenced by a filter. This can help simplify data source planning, because with this we would be able to implement unhandledFilters method in HadoopFsRelation.
This is based on rxin's patch (#13901) and adds unit tests.
## How was this patch tested?
Added a new suite FiltersSuite.
Author: petermaxlee <petermaxlee@gmail.com>
Author: Reynold Xin <rxin@databricks.com>
Closes#14120 from petermaxlee/SPARK-16199.
## What changes were proposed in this pull request?
In order to make it clear which filters are fully handled by the
underlying datasource we will mark them with an *. This will give a
clear visual queue to users that the filter is being treated differently
by catalyst than filters which are just presented to the underlying
DataSource.
Examples from the FilteredScanSuite, in this example `c IN (...)` is handled by the source, `b < ...` is not
### Before
```
//SELECT a FROM oneToTenFiltered WHERE a + b > 9 AND b < 16 AND c IN ('bbbbbBBBBB', 'cccccCCCCC', 'dddddDDDDD', 'foo')
== Physical Plan ==
Project [a#0]
+- Filter (((a#0 + b#1) > 9) && (b#1 < 16))
+- Scan SimpleFilteredScan(1,10)[a#0,b#1] PushedFilters: [LessThan(b,16), In(c, [bbbbbBBBBB,cccccCCCCC,dddddDDDDD,foo]]
```
### After
```
== Physical Plan ==
Project [a#0]
+- Filter (((a#0 + b#1) > 9) && (b#1 < 16))
+- Scan SimpleFilteredScan(1,10)[a#0,b#1] PushedFilters: [LessThan(b,16), *In(c, [bbbbbBBBBB,cccccCCCCC,dddddDDDDD,foo]]
```
## How was the this patch tested?
Manually tested with the Spark Cassandra Connector, a source which fully handles underlying filters. Now fully handled filters appear with an * next to their names. I can add an automated test as well if requested
Post 1.6.1
Tested by modifying the FilteredScanSuite to run explains.
Author: Russell Spitzer <Russell.Spitzer@gmail.com>
Closes#11317 from RussellSpitzer/SPARK-12639-Star.
## What changes were proposed in this pull request?
Incorrect list of files were being allocated to a batch. This caused a file to read multiple times in the multiple batches.
## How was this patch tested?
Added unit tests
Author: Tathagata Das <tathagata.das1565@gmail.com>
Closes#14143 from tdas/SPARK-16430-1.
## What changes were proposed in this pull request?
Display `No physical plan. Waiting for data.` instead of `N/A` for StreamingQuery.explain when no data arrives because `N/A` doesn't provide meaningful information.
## How was this patch tested?
Existing unit tests.
Author: Shixiong Zhu <shixiong@databricks.com>
Closes#14100 from zsxwing/SPARK-16433.
## What changes were proposed in this pull request?
A structured streaming example with event time windowing.
## How was this patch tested?
Run locally
Author: James Thomas <jamesjoethomas@gmail.com>
Closes#13957 from jjthomas/current.
## What changes were proposed in this pull request?
Temporary tables are used frequently, but `spark.catalog.listColumns` does not support those tables. This PR make `SessionCatalog` supports temporary table column listing.
**Before**
```scala
scala> spark.range(10).createOrReplaceTempView("t1")
scala> spark.catalog.listTables().collect()
res1: Array[org.apache.spark.sql.catalog.Table] = Array(Table[name=`t1`, tableType=`TEMPORARY`, isTemporary=`true`])
scala> spark.catalog.listColumns("t1").collect()
org.apache.spark.sql.AnalysisException: Table `t1` does not exist in database `default`.;
```
**After**
```
scala> spark.catalog.listColumns("t1").collect()
res2: Array[org.apache.spark.sql.catalog.Column] = Array(Column[name='id', description='id', dataType='bigint', nullable='false', isPartition='false', isBucket='false'])
```
## How was this patch tested?
Pass the Jenkins tests including a new testcase.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#14114 from dongjoon-hyun/SPARK-16458.
#### What changes were proposed in this pull request?
When users try to implement a data source API with extending only `RelationProvider` and `CreatableRelationProvider`, they will hit an error when resolving the relation.
```Scala
spark.read
.format("org.apache.spark.sql.test.DefaultSourceWithoutUserSpecifiedSchema")
.load()
.write.
format("org.apache.spark.sql.test.DefaultSourceWithoutUserSpecifiedSchema")
.save()
```
The error they hit is like
```
org.apache.spark.sql.test.DefaultSourceWithoutUserSpecifiedSchema does not allow user-specified schemas.;
org.apache.spark.sql.AnalysisException: org.apache.spark.sql.test.DefaultSourceWithoutUserSpecifiedSchema does not allow user-specified schemas.;
at org.apache.spark.sql.execution.datasources.DataSource.resolveRelation(DataSource.scala:319)
at org.apache.spark.sql.execution.datasources.DataSource.write(DataSource.scala:494)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:211)
```
Actually, the bug fix is simple. [`DataSource.createRelation(sparkSession.sqlContext, mode, options, data)`](dd644f8117/sql/core/src/main/scala/org/apache/spark/sql/execution/datasources/DataSource.scala (L429)) already returns a BaseRelation. We should not assign schema to `userSpecifiedSchema`. That schema assignment only makes sense for the data sources that extend `FileFormat`.
#### How was this patch tested?
Added a test case.
Author: gatorsmile <gatorsmile@gmail.com>
Closes#14075 from gatorsmile/dataSource.
## What changes were proposed in this pull request?
Currently, JDBC Writer uses dialects to get datatypes, but doesn't to quote field names. This PR uses dialects to quote the field names, too.
**Reported Error Scenario (MySQL case)**
```scala
scala> val url="jdbc:mysql://localhost:3306/temp"
scala> val prop = new java.util.Properties
scala> prop.setProperty("user","root")
scala> spark.createDataset(Seq("a","b","c")).toDF("order")
scala> df.write.mode("overwrite").jdbc(url, "temptable", prop)
...MySQLSyntaxErrorException: ... near 'order TEXT )
```
## How was this patch tested?
Pass the Jenkins tests and manually do the above case.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#14107 from dongjoon-hyun/SPARK-16387.
## What changes were proposed in this pull request?
Adds an quoteAll option for writing CSV which will quote all fields.
See https://issues.apache.org/jira/browse/SPARK-13638
## How was this patch tested?
Added a test to verify the output columns are quoted for all fields in the Dataframe
Author: Jurriaan Pruis <email@jurriaanpruis.nl>
Closes#13374 from jurriaan/csv-quote-all.
## What changes were proposed in this pull request?
An option that limits the file stream source to read 1 file at a time enables rate limiting. It has the additional convenience that a static set of files can be used like a stream for testing as this will allows those files to be considered one at a time.
This PR adds option `maxFilesPerTrigger`.
## How was this patch tested?
New unit test
Author: Tathagata Das <tathagata.das1565@gmail.com>
Closes#14094 from tdas/SPARK-16430.
## What changes were proposed in this pull request?
There are cases where `complete` output mode does not output updated aggregated value; for details please refer to [SPARK-16350](https://issues.apache.org/jira/browse/SPARK-16350).
The cause is that, as we do `data.as[T].foreachPartition { iter => ... }` in `ForeachSink.addBatch()`, `foreachPartition()` does not support incremental planning for now.
This patches makes `foreachPartition()` support incremental planning in `ForeachSink`, by making a special version of `Dataset` with its `rdd()` method supporting incremental planning.
## How was this patch tested?
Added a unit test which failed before the change
Author: Liwei Lin <lwlin7@gmail.com>
Closes#14030 from lw-lin/fix-foreach-complete.
## What changes were proposed in this pull request?
This patch removes InSet filter pushdown from Parquet data source, since row-based pushdown is not beneficial to Spark and brings extra complexity to the code base.
## How was this patch tested?
N/A
Author: Reynold Xin <rxin@databricks.com>
Closes#14076 from rxin/SPARK-16400.
#### What changes were proposed in this pull request?
When creating a view, a common user error is the number of columns produced by the `SELECT` clause does not match the number of column names specified by `CREATE VIEW`.
For example, given Table `t1` only has 3 columns
```SQL
create view v1(col2, col4, col3, col5) as select * from t1
```
Currently, Spark SQL reports the following error:
```
requirement failed
java.lang.IllegalArgumentException: requirement failed
at scala.Predef$.require(Predef.scala:212)
at org.apache.spark.sql.execution.command.CreateViewCommand.run(views.scala:90)
```
This error message is very confusing. This PR is to detect the error and issue a meaningful error message.
#### How was this patch tested?
Added test cases
Author: gatorsmile <gatorsmile@gmail.com>
Closes#14047 from gatorsmile/viewMismatchedColumns.
## What changes were proposed in this pull request?
Currently, Scala API supports to take options with the types, `String`, `Long`, `Double` and `Boolean` and Python API also supports other types.
This PR corrects `tableProperty` rule to support other types (string, boolean, double and integer) so that support the options for data sources in a consistent way. This will affect other rules such as DBPROPERTIES and TBLPROPERTIES (allowing other types as values).
Also, `TODO add bucketing and partitioning.` was removed because it was resolved in 24bea00047
## How was this patch tested?
Unit test in `MetastoreDataSourcesSuite.scala`.
Author: hyukjinkwon <gurwls223@gmail.com>
Closes#13517 from HyukjinKwon/SPARK-14839.
## What changes were proposed in this pull request?
Currently, if there is a schema as below:
```
root
|-- _1: struct (nullable = true)
| |-- _1: integer (nullable = true)
```
and if we execute the codes below:
```scala
df.filter("_1 IS NOT NULL").count()
```
This pushes down a filter although this filter is being applied to `StructType`.(If my understanding is correct, Spark does not pushes down filters for those).
The reason is, `ParquetFilters.getFieldMap` produces results below:
```
(_1,StructType(StructField(_1,IntegerType,true)))
(_1,IntegerType)
```
and then it becomes a `Map`
```
(_1,IntegerType)
```
Now, because of ` ....lift(dataTypeOf(name)).map(_(name, value))`, this pushes down filters for `_1` which Parquet thinks is `IntegerType`. However, it is actually `StructType`.
So, Parquet filter2 produces incorrect results, for example, the codes below:
```
df.filter("_1 IS NOT NULL").count()
```
produces always 0.
This PR prevents this by not finding nested fields.
## How was this patch tested?
Unit test in `ParquetFilterSuite`.
Author: hyukjinkwon <gurwls223@gmail.com>
Closes#14067 from HyukjinKwon/SPARK-16371.
## What changes were proposed in this pull request?
PR #13696 renamed various Parquet support classes but left `CatalystWriteSupport` behind. This PR is renames it as a follow-up.
## How was this patch tested?
N/A.
Author: Cheng Lian <lian@databricks.com>
Closes#14070 from liancheng/spark-15979-follow-up.
## What changes were proposed in this pull request?
These two configs should always be true after Spark 2.0. This patch removes them from the config list. Note that ideally this should've gone into branch-2.0, but due to the timing of the release we should only merge this in master for Spark 2.1.
## How was this patch tested?
Updated test cases.
Author: Reynold Xin <rxin@databricks.com>
Closes#14061 from rxin/SPARK-16388.
## What changes were proposed in this pull request?
Currently, `regexp_replace` function supports `Column` arguments in a query. This PR supports that in a `Dataset` operation, too.
## How was this patch tested?
Pass the Jenkins tests with a updated testcase.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#14060 from dongjoon-hyun/SPARK-16340.
## What changes were proposed in this pull request?
This PR removes `SessionState.executeSql` in favor of `SparkSession.sql`. We can remove this safely since the visibility `SessionState` is `private[sql]` and `executeSql` is only used in one **ignored** test, `test("Multiple Hive Instances")`.
## How was this patch tested?
Pass the Jenkins tests.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#14055 from dongjoon-hyun/SPARK-16383.
## What changes were proposed in this pull request?
This patch fixes the bug that the refresh command does not work on temporary views. This patch is based on https://github.com/apache/spark/pull/13989, but removes the public Dataset.refresh() API as well as improved test coverage.
Note that I actually think the public refresh() API is very useful. We can in the future implement it by also invalidating the lazy vals in QueryExecution (or alternatively just create a new QueryExecution).
## How was this patch tested?
Re-enabled a previously ignored test, and added a new test suite for Hive testing behavior of temporary views against MetastoreRelation.
Author: Reynold Xin <rxin@databricks.com>
Author: petermaxlee <petermaxlee@gmail.com>
Closes#14009 from rxin/SPARK-16311.
## What changes were proposed in this pull request?
Currently, there are a few reports about Spark 2.0 query performance regression for large queries.
This PR speeds up SQL query processing performance by removing redundant **consecutive `executePlan`** call in `Dataset.ofRows` function and `Dataset` instantiation. Specifically, this PR aims to reduce the overhead of SQL query execution plan generation, not real query execution. So, we can not see the result in the Spark Web UI. Please use the following query script. The result is **25.78 sec** -> **12.36 sec** as expected.
**Sample Query**
```scala
val n = 4000
val values = (1 to n).map(_.toString).mkString(", ")
val columns = (1 to n).map("column" + _).mkString(", ")
val query =
s"""
|SELECT $columns
|FROM VALUES ($values) T($columns)
|WHERE 1=2 AND 1 IN ($columns)
|GROUP BY $columns
|ORDER BY $columns
|""".stripMargin
def time[R](block: => R): R = {
val t0 = System.nanoTime()
val result = block
println("Elapsed time: " + ((System.nanoTime - t0) / 1e9) + "s")
result
}
```
**Before**
```scala
scala> time(sql(query))
Elapsed time: 30.138142577s // First query has a little overhead of initialization.
res0: org.apache.spark.sql.DataFrame = [column1: int, column2: int ... 3998 more fields]
scala> time(sql(query))
Elapsed time: 25.787751452s // Let's compare this one.
res1: org.apache.spark.sql.DataFrame = [column1: int, column2: int ... 3998 more fields]
```
**After**
```scala
scala> time(sql(query))
Elapsed time: 17.500279659s // First query has a little overhead of initialization.
res0: org.apache.spark.sql.DataFrame = [column1: int, column2: int ... 3998 more fields]
scala> time(sql(query))
Elapsed time: 12.364812255s // This shows the real difference. The speed up is about 2 times.
res1: org.apache.spark.sql.DataFrame = [column1: int, column2: int ... 3998 more fields]
```
## How was this patch tested?
Manual by the above script.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#14044 from dongjoon-hyun/SPARK-16360.
## What changes were proposed in this pull request?
TypedAggregateExpression sets nullable based on the schema of the outputEncoder
## How was this patch tested?
Add test in DatasetAggregatorSuite
Author: Koert Kuipers <koert@tresata.com>
Closes#13532 from koertkuipers/feat-aggregator-nullable.
## What changes were proposed in this pull request?
This PR fixes the minor Java linter errors like the following.
```
- public int read(char cbuf[], int off, int len) throws IOException {
+ public int read(char[] cbuf, int off, int len) throws IOException {
```
## How was this patch tested?
Manual.
```
$ build/mvn -T 4 -q -DskipTests -Pyarn -Phadoop-2.3 -Pkinesis-asl -Phive -Phive-thriftserver install
$ dev/lint-java
Using `mvn` from path: /usr/local/bin/mvn
Checkstyle checks passed.
```
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#14017 from dongjoon-hyun/minor_build_java_linter_error.
## What changes were proposed in this pull request?
In structured streaming, Spark does not report errors when the specified directory does not exist. This is a behavior different from the batch mode. This patch changes the behavior to fail if the directory does not exist (when the path is not a glob pattern).
## How was this patch tested?
Updated unit tests to reflect the new behavior.
Author: Reynold Xin <rxin@databricks.com>
Closes#14002 from rxin/SPARK-16335.