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2887 commits

Author SHA1 Message Date
Robert Kruszewski 806d8a8e98 [SPARK-16984][SQL] don't try whole dataset immediately when first partition doesn't have…
## What changes were proposed in this pull request?

Try increase number of partitions to try so we don't revert to all.

## How was this patch tested?

Empirically. This is common case optimization.

Author: Robert Kruszewski <robertk@palantir.com>

Closes #14573 from robert3005/robertk/execute-take-backoff.
2016-09-02 17:14:43 +02:00
Jacek Laskowski a3097e2b31 [SQL][DOC][MINOR] Add (Scala-specific) and (Java-specific)
## What changes were proposed in this pull request?

Adds (Scala-specific) and (Java-specific) to Scaladoc.

## How was this patch tested?

local build

Author: Jacek Laskowski <jacek@japila.pl>

Closes #14891 from jaceklaskowski/scala-specifics.
2016-09-02 10:25:42 +01:00
Lianhui Wang 06e33985c6 [SPARK-16302][SQL] Set the right number of partitions for reading data from a local collection.
follow #13137 This pr sets the right number of partitions when reading data from a local collection.
Query 'val df = Seq((1, 2)).toDF("key", "value").count' always use defaultParallelism tasks. So it causes run many empty or small tasks.

Manually tested and checked.

Author: Lianhui Wang <lianhuiwang09@gmail.com>

Closes #13979 from lianhuiwang/localTable-Parallel.
2016-09-01 17:09:23 -07:00
Qifan Pu 03d77af9ec [SPARK-16525] [SQL] Enable Row Based HashMap in HashAggregateExec
## What changes were proposed in this pull request?

This PR is the second step for the following feature:

For hash aggregation in Spark SQL, we use a fast aggregation hashmap to act as a "cache" in order to boost aggregation performance. Previously, the hashmap is backed by a `ColumnarBatch`. This has performance issues when we have wide schema for the aggregation table (large number of key fields or value fields).
In this JIRA, we support another implementation of fast hashmap, which is backed by a `RowBatch`. We then automatically pick between the two implementations based on certain knobs.

In this second-step PR, we enable `RowBasedHashMapGenerator` in `HashAggregateExec`.

## How was this patch tested?

Added tests: `RowBasedAggregateHashMapSuite` and ` VectorizedAggregateHashMapSuite`
Additional micro-benchmarks tests and TPCDS results will be added in a separate PR in the series.

Author: Qifan Pu <qifan.pu@gmail.com>
Author: ooq <qifan.pu@gmail.com>

Closes #14176 from ooq/rowbasedfastaggmap-pr2.
2016-09-01 16:56:35 -07:00
Josh Rosen 15539e54c2 [SPARK-17355] Workaround for HIVE-14684 / HiveResultSetMetaData.isSigned exception
## What changes were proposed in this pull request?

Attempting to use Spark SQL's JDBC data source against the Hive ThriftServer results in a `java.sql.SQLException: Method` not supported exception from `org.apache.hive.jdbc.HiveResultSetMetaData.isSigned`. Here are two user reports of this issue:

- https://stackoverflow.com/questions/34067686/spark-1-5-1-not-working-with-hive-jdbc-1-2-0
- https://stackoverflow.com/questions/32195946/method-not-supported-in-spark

I have filed [HIVE-14684](https://issues.apache.org/jira/browse/HIVE-14684) to attempt to fix this in Hive by implementing the isSigned method, but in the meantime / for compatibility with older JDBC drivers I think we should add special-case error handling to work around this bug.

This patch updates `JDBCRDD`'s `ResultSetMetadata` to schema conversion to catch the "Method not supported" exception from Hive and return `isSigned = true`. I believe that this is safe because, as far as I know, Hive does not support unsigned numeric types.

## How was this patch tested?

Tested manually against a Spark Thrift Server.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #14911 from JoshRosen/hive-jdbc-workaround.
2016-09-01 16:45:26 -07:00
hyukjinkwon d314677cfd [SPARK-16461][SQL] Support partition batch pruning with <=> predicate in InMemoryTableScanExec
## What changes were proposed in this pull request?

It seems `EqualNullSafe` filter was missed for batch pruneing partitions in cached tables.

It seems supporting this improves the performance roughly 5 times faster.

Running the codes below:

```scala
test("Null-safe equal comparison") {
  val N = 20000000
  val df = spark.range(N).repartition(20)
  val benchmark = new Benchmark("Null-safe equal comparison", N)
  df.createOrReplaceTempView("t")
  spark.catalog.cacheTable("t")
  sql("select id from t where id <=> 1").collect()

  benchmark.addCase("Null-safe equal comparison", 10) { _ =>
    sql("select id from t where id <=> 1").collect()
  }
  benchmark.run()
}
```

produces the results below:

**Before:**

```
Running benchmark: Null-safe equal comparison
  Running case: Null-safe equal comparison
  Stopped after 10 iterations, 2098 ms

Java HotSpot(TM) 64-Bit Server VM 1.8.0_45-b14 on Mac OS X 10.11.5
Intel(R) Core(TM) i7-4850HQ CPU  2.30GHz

Null-safe equal comparison:              Best/Avg Time(ms)    Rate(M/s)   Per Row(ns)   Relative
------------------------------------------------------------------------------------------------
Null-safe equal comparison                     204 /  210         98.1          10.2       1.0X
```

**After:**

```
Running benchmark: Null-safe equal comparison
  Running case: Null-safe equal comparison
  Stopped after 10 iterations, 478 ms

Java HotSpot(TM) 64-Bit Server VM 1.8.0_45-b14 on Mac OS X 10.11.5
Intel(R) Core(TM) i7-4850HQ CPU  2.30GHz

Null-safe equal comparison:              Best/Avg Time(ms)    Rate(M/s)   Per Row(ns)   Relative
------------------------------------------------------------------------------------------------
Null-safe equal comparison                      42 /   48        474.1           2.1       1.0X
```

## How was this patch tested?

Unit tests in `PartitionBatchPruningSuite`.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #14117 from HyukjinKwon/SPARK-16461.
2016-09-01 15:32:07 -07:00
Sean Owen 3893e8c576 [SPARK-17331][CORE][MLLIB] Avoid allocating 0-length arrays
## What changes were proposed in this pull request?

Avoid allocating some 0-length arrays, esp. in UTF8String, and by using Array.empty in Scala over Array[T]()

## How was this patch tested?

Jenkins

Author: Sean Owen <sowen@cloudera.com>

Closes #14895 from srowen/SPARK-17331.
2016-09-01 12:13:07 -07:00
Herman van Hovell 2be5f8d7e0 [SPARK-17263][SQL] Add hexadecimal literal parsing
## What changes were proposed in this pull request?
This PR adds the ability to parse SQL (hexadecimal) binary literals (AKA bit strings). It follows the following syntax `X'[Hexadecimal Characters]+'`, for example: `X'01AB'` would create a binary the following binary array `0x01AB`.

If an uneven number of hexadecimal characters is passed, then the upper 4 bits of the initial byte are kept empty, and the lower 4 bits are filled using the first character. For example `X'1C7'` would create the following binary array `0x01C7`.

Binary data (Array[Byte]) does not have a proper `hashCode` and `equals` functions. This meant that comparing `Literal`s containing binary data was a pain. I have updated Literal.hashCode and Literal.equals to deal properly with binary data.

## How was this patch tested?
Added tests to the `ExpressionParserSuite`, `SQLQueryTestSuite` and `ExpressionSQLBuilderSuite`.

Author: Herman van Hovell <hvanhovell@databricks.com>

Closes #14832 from hvanhovell/SPARK-17263.
2016-09-01 12:01:22 -07:00
Wenchen Fan 8e740ae44d [SPARK-17257][SQL] the physical plan of CREATE TABLE or CTAS should take CatalogTable
## What changes were proposed in this pull request?

This is kind of a follow-up of https://github.com/apache/spark/pull/14482 . As we put `CatalogTable` in the logical plan directly, it makes sense to let physical plans take `CatalogTable` directly, instead of extracting some fields of `CatalogTable` in planner and then construct a new `CatalogTable` in physical plan.

## How was this patch tested?

existing tests.

Author: Wenchen Fan <wenchen@databricks.com>

Closes #14823 from cloud-fan/create-table.
2016-09-01 16:45:22 +08:00
gatorsmile 1f06a5b6a0 [SPARK-17353][SPARK-16943][SPARK-16942][SQL] Fix multiple bugs in CREATE TABLE LIKE command
### What changes were proposed in this pull request?
The existing `CREATE TABLE LIKE` command has multiple issues:

- The generated table is non-empty when the source table is a data source table. The major reason is the data source table is using the table property `path` to store the location of table contents. Currently, we keep it unchanged. Thus, we still create the same table with the same location.

- The table type of the generated table is `EXTERNAL` when the source table is an external Hive Serde table. Currently, we explicitly set it to `MANAGED`, but Hive is checking the table property `EXTERNAL` to decide whether the table is `EXTERNAL` or not. (See https://github.com/apache/hive/blob/master/metastore/src/java/org/apache/hadoop/hive/metastore/ObjectStore.java#L1407-L1408) Thus, the created table is still `EXTERNAL`.

- When the source table is a `VIEW`, the metadata of the generated table contains the original view text and view original text. So far, this does not break anything, but it could cause something wrong in Hive. (For example, https://github.com/apache/hive/blob/master/metastore/src/java/org/apache/hadoop/hive/metastore/ObjectStore.java#L1405-L1406)

- The issue regarding the table `comment`. To follow what Hive does, the table comment should be cleaned, but the column comments should be still kept.

- The `INDEX` table is not supported. Thus, we should throw an exception in this case.

- `owner` should not be retained. `ToHiveTable` set it [here](e679bc3c1c/sql/hive/src/main/scala/org/apache/spark/sql/hive/client/HiveClientImpl.scala (L793)) no matter which value we set in `CatalogTable`. We set it to an empty string for avoiding the confusing output in Explain.

- Add a support for temp tables

- Like Hive, we should not copy the table properties from the source table to the created table, especially for the statistics-related properties, which could be wrong in the created table.

- `unsupportedFeatures` should not be copied from the source table. The created table does not have these unsupported features.

- When the type of source table is a view, the target table is using the default format of data source tables: `spark.sql.sources.default`.

This PR is to fix the above issues.

### How was this patch tested?
Improve the test coverage by adding more test cases

Author: gatorsmile <gatorsmile@gmail.com>

Closes #14531 from gatorsmile/createTableLike.
2016-09-01 16:36:14 +08:00
Sean Zhong a18c169fd0 [SPARK-16283][SQL] Implements percentile_approx aggregation function which supports partial aggregation.
## What changes were proposed in this pull request?

This PR implements aggregation function `percentile_approx`. Function `percentile_approx` returns the approximate percentile(s) of a column at the given percentage(s). A percentile is a watermark value below which a given percentage of the column values fall. For example, the percentile of column `col` at percentage 50% is the median value of column `col`.

### Syntax:
```
# Returns percentile at a given percentage value. The approximation error can be reduced by increasing parameter accuracy, at the cost of memory.
percentile_approx(col, percentage [, accuracy])

# Returns percentile value array at given percentage value array
percentile_approx(col, array(percentage1 [, percentage2]...) [, accuracy])
```

### Features:
1. This function supports partial aggregation.
2. The memory consumption is bounded. The larger `accuracy` parameter we choose, we smaller error we get. The default accuracy value is 10000, to match with Hive default setting. Choose a smaller value for smaller memory footprint.
3.  This function supports window function aggregation.

### Example usages:
```
## Returns the 25th percentile value, with default accuracy
SELECT percentile_approx(col, 0.25) FROM table

## Returns an array of percentile value (25th, 50th, 75th), with default accuracy
SELECT percentile_approx(col, array(0.25, 0.5, 0.75)) FROM table

## Returns 25th percentile value, with custom accuracy value 100, larger accuracy parameter yields smaller approximation error
SELECT percentile_approx(col, 0.25, 100) FROM table

## Returns the 25th, and 50th percentile values, with custom accuracy value 100
SELECT percentile_approx(col, array(0.25, 0.5), 100) FROM table
```

### NOTE:
1. The `percentile_approx` implementation is different from Hive, so the result returned on same query maybe slightly different with Hive. This implementation uses `QuantileSummaries` as the underlying probabilistic data structure, and mainly follows paper `Space-efficient Online Computation of Quantile Summaries` by Greenwald, Michael and Khanna, Sanjeev. (http://dx.doi.org/10.1145/375663.375670)`
2. The current implementation of `QuantileSummaries` doesn't support automatic compression. This PR has a rule to do compression automatically at the caller side, but it may not be optimal.

## How was this patch tested?

Unit test, and Sql query test.

## Acknowledgement
1. This PR's work in based on lw-lin's PR https://github.com/apache/spark/pull/14298, with improvements like supporting partial aggregation, fixing out of memory issue.

Author: Sean Zhong <seanzhong@databricks.com>

Closes #14868 from clockfly/appro_percentile_try_2.
2016-09-01 16:31:13 +08:00
Wenchen Fan aaf632b213 revert PR#10896 and PR#14865
## What changes were proposed in this pull request?

according to the discussion in the original PR #10896 and the new approach PR #14876 , we decided to revert these 2 PRs and go with the new approach.

## How was this patch tested?

N/A

Author: Wenchen Fan <wenchen@databricks.com>

Closes #14909 from cloud-fan/revert.
2016-09-01 13:19:15 +08:00
Wenchen Fan 12fd0cd615 [SPARK-17180][SPARK-17309][SPARK-17323][SQL] create AlterViewAsCommand to handle ALTER VIEW AS
## What changes were proposed in this pull request?

Currently we use `CreateViewCommand` to implement ALTER VIEW AS, which has 3 bugs:

1. SPARK-17180: ALTER VIEW AS should alter temp view if view name has no database part and temp view exists
2. SPARK-17309: ALTER VIEW AS should issue exception if view does not exist.
3. SPARK-17323: ALTER VIEW AS should keep the previous table properties, comment, create_time, etc.

The root cause is, ALTER VIEW AS is quite different from CREATE VIEW, we need different code path to handle them. However, in `CreateViewCommand`, there is no way to distinguish ALTER VIEW AS and CREATE VIEW, we have to introduce extra flag. But instead of doing this, I think a more natural way is to separate the ALTER VIEW AS logic into a new command.

## How was this patch tested?

new tests in SQLViewSuite

Author: Wenchen Fan <wenchen@databricks.com>

Closes #14874 from cloud-fan/minor4.
2016-08-31 17:08:08 +08:00
Xin Ren 27209252f0 [MINOR][MLLIB][SQL] Clean up unused variables and unused import
## What changes were proposed in this pull request?

Clean up unused variables and unused import statements, unnecessary `return` and `toArray`, and some more style improvement,  when I walk through the code examples.

## How was this patch tested?

Testet manually on local laptop.

Author: Xin Ren <iamshrek@126.com>

Closes #14836 from keypointt/codeWalkThroughML.
2016-08-30 11:24:55 +01:00
Sean Owen befab9c1c6 [SPARK-17264][SQL] DataStreamWriter should document that it only supports Parquet for now
## What changes were proposed in this pull request?

Clarify that only parquet files are supported by DataStreamWriter now

## How was this patch tested?

(Doc build -- no functional changes to test)

Author: Sean Owen <sowen@cloudera.com>

Closes #14860 from srowen/SPARK-17264.
2016-08-30 11:19:45 +01:00
Takeshi YAMAMURO 94922d79e9 [SPARK-17289][SQL] Fix a bug to satisfy sort requirements in partial aggregations
## What changes were proposed in this pull request?
Partial aggregations are generated in `EnsureRequirements`, but the planner fails to
check if partial aggregation satisfies sort requirements.
For the following query:
```
val df2 = (0 to 1000).map(x => (x % 2, x.toString)).toDF("a", "b").createOrReplaceTempView("t2")
spark.sql("select max(b) from t2 group by a").explain(true)
```
Now, the SortAggregator won't insert Sort operator before partial aggregation, this will break sort-based partial aggregation.
```
== Physical Plan ==
SortAggregate(key=[a#5], functions=[max(b#6)], output=[max(b)#17])
+- *Sort [a#5 ASC], false, 0
   +- Exchange hashpartitioning(a#5, 200)
      +- SortAggregate(key=[a#5], functions=[partial_max(b#6)], output=[a#5, max#19])
         +- LocalTableScan [a#5, b#6]
```
Actually, a correct plan is:
```
== Physical Plan ==
SortAggregate(key=[a#5], functions=[max(b#6)], output=[max(b)#17])
+- *Sort [a#5 ASC], false, 0
   +- Exchange hashpartitioning(a#5, 200)
      +- SortAggregate(key=[a#5], functions=[partial_max(b#6)], output=[a#5, max#19])
         +- *Sort [a#5 ASC], false, 0
            +- LocalTableScan [a#5, b#6]
```

## How was this patch tested?
Added tests in `PlannerSuite`.

Author: Takeshi YAMAMURO <linguin.m.s@gmail.com>

Closes #14865 from maropu/SPARK-17289.
2016-08-30 16:43:47 +08:00
Davies Liu 48caec2516 [SPARK-17063] [SQL] Improve performance of MSCK REPAIR TABLE with Hive metastore
## What changes were proposed in this pull request?

This PR split the the single `createPartitions()` call into smaller batches, which could prevent Hive metastore from OOM (caused by millions of partitions).

It will also try to gather all the fast stats (number of files and total size of all files) in parallel to avoid the bottle neck of listing the files in metastore sequential, which is controlled by spark.sql.gatherFastStats (enabled by default).

## How was this patch tested?

Tested locally with 10000 partitions and 100 files with embedded metastore, without gathering fast stats in parallel, adding partitions took 153 seconds, after enable that, gathering the fast stats took about 34 seconds, adding these partitions took 25 seconds (most of the time spent in object store), 59 seconds in total, 2.5X faster (with larger cluster, gathering will much faster).

Author: Davies Liu <davies@databricks.com>

Closes #14607 from davies/repair_batch.
2016-08-29 11:23:53 -07:00
Tejas Patil 095862a3cf [SPARK-17271][SQL] Planner adds un-necessary Sort even if child ordering is semantically same as required ordering
## What changes were proposed in this pull request?

Jira : https://issues.apache.org/jira/browse/SPARK-17271

Planner is adding un-needed SORT operation due to bug in the way comparison for `SortOrder` is done at https://github.com/apache/spark/blob/master/sql/core/src/main/scala/org/apache/spark/sql/execution/exchange/EnsureRequirements.scala#L253
`SortOrder` needs to be compared semantically because `Expression` within two `SortOrder` can be "semantically equal" but not literally equal objects.

eg. In case of `sql("SELECT * FROM table1 a JOIN table2 b ON a.col1=b.col1")`

Expression in required SortOrder:
```
      AttributeReference(
        name = "col1",
        dataType = LongType,
        nullable = false
      ) (exprId = exprId,
        qualifier = Some("a")
      )
```

Expression in child SortOrder:
```
      AttributeReference(
        name = "col1",
        dataType = LongType,
        nullable = false
      ) (exprId = exprId)
```

Notice that the output column has a qualifier but the child attribute does not but the inherent expression is the same and hence in this case we can say that the child satisfies the required sort order.

This PR includes following changes:
- Added a `semanticEquals` method to `SortOrder` so that it can compare underlying child expressions semantically (and not using default Object.equals)
- Fixed `EnsureRequirements` to use semantic comparison of SortOrder

## How was this patch tested?

- Added a test case to `PlannerSuite`. Ran rest tests in `PlannerSuite`

Author: Tejas Patil <tejasp@fb.com>

Closes #14841 from tejasapatil/SPARK-17271_sort_order_equals_bug.
2016-08-28 19:14:58 +02:00
Takeshi YAMAMURO cd0ed31ea9 [SPARK-15382][SQL] Fix a bug in sampling with replacement
## What changes were proposed in this pull request?
This pr to fix a bug below in sampling with replacement
```
val df = Seq((1, 0), (2, 0), (3, 0)).toDF("a", "b")
df.sample(true, 2.0).withColumn("c", monotonically_increasing_id).select($"c").show
+---+
|  c|
+---+
|  0|
|  1|
|  1|
|  1|
|  2|
+---+
```

## How was this patch tested?
Added a test in `DataFrameSuite`.

Author: Takeshi YAMAMURO <linguin.m.s@gmail.com>

Closes #14800 from maropu/FixSampleBug.
2016-08-27 08:42:41 +01:00
petermaxlee f64a1ddd09 [SPARK-17235][SQL] Support purging of old logs in MetadataLog
## What changes were proposed in this pull request?
This patch adds a purge interface to MetadataLog, and an implementation in HDFSMetadataLog. The purge function is currently unused, but I will use it to purge old execution and file source logs in follow-up patches. These changes are required in a production structured streaming job that runs for a long period of time.

## How was this patch tested?
Added a unit test case in HDFSMetadataLogSuite.

Author: petermaxlee <petermaxlee@gmail.com>

Closes #14802 from petermaxlee/SPARK-17235.
2016-08-26 16:05:34 -07:00
Herman van Hovell a11d10f182 [SPARK-17246][SQL] Add BigDecimal literal
## What changes were proposed in this pull request?
This PR adds parser support for `BigDecimal` literals. If you append the suffix `BD` to a valid number then this will be interpreted as a `BigDecimal`, for example `12.0E10BD` will interpreted into a BigDecimal with scale -9 and precision 3. This is useful in situations where you need exact values.

## How was this patch tested?
Added tests to `ExpressionParserSuite`, `ExpressionSQLBuilderSuite` and `SQLQueryTestSuite`.

Author: Herman van Hovell <hvanhovell@databricks.com>

Closes #14819 from hvanhovell/SPARK-17246.
2016-08-26 13:29:22 -07:00
petermaxlee 9812f7d538 [SPARK-17165][SQL] FileStreamSource should not track the list of seen files indefinitely
## What changes were proposed in this pull request?
Before this change, FileStreamSource uses an in-memory hash set to track the list of files processed by the engine. The list can grow indefinitely, leading to OOM or overflow of the hash set.

This patch introduces a new user-defined option called "maxFileAge", default to 24 hours. If a file is older than this age, FileStreamSource will purge it from the in-memory map that was used to track the list of files that have been processed.

## How was this patch tested?
Added unit tests for the underlying utility, and also added an end-to-end test to validate the purge in FileStreamSourceSuite. Also verified the new test cases would fail when the timeout was set to a very large number.

Author: petermaxlee <petermaxlee@gmail.com>

Closes #14728 from petermaxlee/SPARK-17165.
2016-08-26 11:30:23 -07:00
gatorsmile fd4ba3f626 [SPARK-17192][SQL] Issue Exception when Users Specify the Partitioning Columns without a Given Schema
### What changes were proposed in this pull request?
Address the comments by yhuai in the original PR: https://github.com/apache/spark/pull/14207

First, issue an exception instead of logging a warning when users specify the partitioning columns without a given schema.

Second, refactor the codes a little.

### How was this patch tested?
Fixed the test cases.

Author: gatorsmile <gatorsmile@gmail.com>

Closes #14572 from gatorsmile/followup16552.
2016-08-26 11:13:38 -07:00
hyukjinkwon 6063d5963f [SPARK-16216][SQL][FOLLOWUP] Enable timestamp type tests for JSON and verify all unsupported types in CSV
## What changes were proposed in this pull request?

This PR enables the tests for `TimestampType` for JSON and unifies the logics for verifying schema when writing in CSV.

In more details, this PR,

- Enables the tests for `TimestampType` for JSON and

  This was disabled due to an issue in `DatatypeConverter.parseDateTime` which parses dates incorrectly, for example as below:

  ```scala
   val d = javax.xml.bind.DatatypeConverter.parseDateTime("0900-01-01T00:00:00.000").getTime
  println(d.toString)
  ```
  ```
  Fri Dec 28 00:00:00 KST 899
  ```

  However, since we use `FastDateFormat`, it seems we are safe now.

  ```scala
  val d = FastDateFormat.getInstance("yyyy-MM-dd'T'HH:mm:ss.SSS").parse("0900-01-01T00:00:00.000")
  println(d)
  ```
  ```
  Tue Jan 01 00:00:00 PST 900
  ```

- Verifies all unsupported types in CSV

  There is a separate logics to verify the schemas in `CSVFileFormat`. This is actually not quite correct enough because we don't support `NullType` and `CalanderIntervalType` as well `StructType`, `ArrayType`, `MapType`. So, this PR adds both types.

## How was this patch tested?

Tests in `JsonHadoopFsRelation` and `CSVSuite`

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #14829 from HyukjinKwon/SPARK-16216-followup.
2016-08-26 17:29:37 +02:00
Sean Zhong d96d151563 [SPARK-17187][SQL] Supports using arbitrary Java object as internal aggregation buffer object
## What changes were proposed in this pull request?

This PR introduces an abstract class `TypedImperativeAggregate` so that an aggregation function of TypedImperativeAggregate can use  **arbitrary** user-defined Java object as intermediate aggregation buffer object.

**This has advantages like:**
1. It now can support larger category of aggregation functions. For example, it will be much easier to implement aggregation function `percentile_approx`, which has a complex aggregation buffer definition.
2. It can be used to avoid doing serialization/de-serialization for every call of `update` or `merge` when converting domain specific aggregation object to internal Spark-Sql storage format.
3. It is easier to integrate with other existing monoid libraries like algebird, and supports more aggregation functions with high performance.

Please see `org.apache.spark.sql.TypedImperativeAggregateSuite.TypedMaxAggregate` to find an example of how to defined a `TypedImperativeAggregate` aggregation function.
Please see Java doc of `TypedImperativeAggregate` and Jira ticket SPARK-17187 for more information.

## How was this patch tested?

Unit tests.

Author: Sean Zhong <seanzhong@databricks.com>
Author: Yin Huai <yhuai@databricks.com>

Closes #14753 from clockfly/object_aggregation_buffer_try_2.
2016-08-25 16:36:16 -07:00
Josh Rosen a133057ce5 [SPARK-17229][SQL] PostgresDialect shouldn't widen float and short types during reads
## What changes were proposed in this pull request?

When reading float4 and smallint columns from PostgreSQL, Spark's `PostgresDialect` widens these types to Decimal and Integer rather than using the narrower Float and Short types. According to https://www.postgresql.org/docs/7.1/static/datatype.html#DATATYPE-TABLE, Postgres maps the `smallint` type to a signed two-byte integer and the `real` / `float4` types to single precision floating point numbers.

This patch fixes this by adding more special-cases to `getCatalystType`, similar to what was done for the Derby JDBC dialect. I also fixed a similar problem in the write path which causes Spark to create integer columns in Postgres for what should have been ShortType columns.

## How was this patch tested?

New test cases in `PostgresIntegrationSuite` (which I ran manually because Jenkins can't run it right now).

Author: Josh Rosen <joshrosen@databricks.com>

Closes #14796 from JoshRosen/postgres-jdbc-type-fixes.
2016-08-25 23:22:40 +02:00
gatorsmile d2ae6399ee [SPARK-16991][SPARK-17099][SPARK-17120][SQL] Fix Outer Join Elimination when Filter's isNotNull Constraints Unable to Filter Out All Null-supplying Rows
### What changes were proposed in this pull request?
This PR is to fix an incorrect outer join elimination when filter's `isNotNull` constraints is unable to filter out all null-supplying rows. For example, `isnotnull(coalesce(b#227, c#238))`.

Users can hit this error when they try to use `using/natural outer join`, which is converted to a normal outer join with a `coalesce` expression on the `using columns`. For example,
```Scala
    val a = Seq((1, 2), (2, 3)).toDF("a", "b")
    val b = Seq((2, 5), (3, 4)).toDF("a", "c")
    val c = Seq((3, 1)).toDF("a", "d")
    val ab = a.join(b, Seq("a"), "fullouter")
    ab.join(c, "a").explain(true)
```
The dataframe `ab` is doing `using full-outer join`, which is converted to a normal outer join with a `coalesce` expression. Constraints inference generates a `Filter` with constraints `isnotnull(coalesce(b#227, c#238))`. Then, it triggers a wrong outer join elimination and generates a wrong result.
```
Project [a#251, b#227, c#237, d#247]
+- Join Inner, (a#251 = a#246)
   :- Project [coalesce(a#226, a#236) AS a#251, b#227, c#237]
   :  +- Join FullOuter, (a#226 = a#236)
   :     :- Project [_1#223 AS a#226, _2#224 AS b#227]
   :     :  +- LocalRelation [_1#223, _2#224]
   :     +- Project [_1#233 AS a#236, _2#234 AS c#237]
   :        +- LocalRelation [_1#233, _2#234]
   +- Project [_1#243 AS a#246, _2#244 AS d#247]
      +- LocalRelation [_1#243, _2#244]

== Optimized Logical Plan ==
Project [a#251, b#227, c#237, d#247]
+- Join Inner, (a#251 = a#246)
   :- Project [coalesce(a#226, a#236) AS a#251, b#227, c#237]
   :  +- Filter isnotnull(coalesce(a#226, a#236))
   :     +- Join FullOuter, (a#226 = a#236)
   :        :- LocalRelation [a#226, b#227]
   :        +- LocalRelation [a#236, c#237]
   +- LocalRelation [a#246, d#247]
```

**A note to the `Committer`**, please also give the credit to dongjoon-hyun who submitted another PR for fixing this issue. https://github.com/apache/spark/pull/14580

### How was this patch tested?
Added test cases

Author: gatorsmile <gatorsmile@gmail.com>

Closes #14661 from gatorsmile/fixOuterJoinElimination.
2016-08-25 14:18:58 +02:00
Takeshi YAMAMURO 2b0cc4e0df [SPARK-12978][SQL] Skip unnecessary final group-by when input data already clustered with group-by keys
This ticket targets the optimization to skip an unnecessary group-by operation below;

Without opt.:
```
== Physical Plan ==
TungstenAggregate(key=[col0#159], functions=[(sum(col1#160),mode=Final,isDistinct=false),(avg(col2#161),mode=Final,isDistinct=false)], output=[col0#159,sum(col1)#177,avg(col2)#178])
+- TungstenAggregate(key=[col0#159], functions=[(sum(col1#160),mode=Partial,isDistinct=false),(avg(col2#161),mode=Partial,isDistinct=false)], output=[col0#159,sum#200,sum#201,count#202L])
   +- TungstenExchange hashpartitioning(col0#159,200), None
      +- InMemoryColumnarTableScan [col0#159,col1#160,col2#161], InMemoryRelation [col0#159,col1#160,col2#161], true, 10000, StorageLevel(true, true, false, true, 1), ConvertToUnsafe, None
```

With opt.:
```
== Physical Plan ==
TungstenAggregate(key=[col0#159], functions=[(sum(col1#160),mode=Complete,isDistinct=false),(avg(col2#161),mode=Final,isDistinct=false)], output=[col0#159,sum(col1)#177,avg(col2)#178])
+- TungstenExchange hashpartitioning(col0#159,200), None
  +- InMemoryColumnarTableScan [col0#159,col1#160,col2#161], InMemoryRelation [col0#159,col1#160,col2#161], true, 10000, StorageLevel(true, true, false, true, 1), ConvertToUnsafe, None
```

Author: Takeshi YAMAMURO <linguin.m.s@gmail.com>

Closes #10896 from maropu/SkipGroupbySpike.
2016-08-25 12:39:58 +02:00
jiangxingbo 5f02d2e5b4 [SPARK-17215][SQL] Method SQLContext.parseDataType(dataTypeString: String) could be removed.
## What changes were proposed in this pull request?

Method `SQLContext.parseDataType(dataTypeString: String)` could be removed, we should use `SparkSession.parseDataType(dataTypeString: String)` instead.
This require updating PySpark.

## How was this patch tested?

Existing test cases.

Author: jiangxingbo <jiangxb1987@gmail.com>

Closes #14790 from jiangxb1987/parseDataType.
2016-08-24 23:36:04 -07:00
gatorsmile 4d0706d616 [SPARK-17190][SQL] Removal of HiveSharedState
### What changes were proposed in this pull request?
Since `HiveClient` is used to interact with the Hive metastore, it should be hidden in `HiveExternalCatalog`. After moving `HiveClient` into `HiveExternalCatalog`, `HiveSharedState` becomes a wrapper of `HiveExternalCatalog`. Thus, removal of `HiveSharedState` becomes straightforward. After removal of `HiveSharedState`, the reflection logic is directly applied on the choice of `ExternalCatalog` types, based on the configuration of `CATALOG_IMPLEMENTATION`.

~~`HiveClient` is also used/invoked by the other entities besides HiveExternalCatalog, we defines the following two APIs: getClient and getNewClient~~

### How was this patch tested?
The existing test cases

Author: gatorsmile <gatorsmile@gmail.com>

Closes #14757 from gatorsmile/removeHiveClient.
2016-08-25 12:50:03 +08:00
hyukjinkwon 29952ed096 [SPARK-16216][SQL] Read/write timestamps and dates in ISO 8601 and dateFormat/timestampFormat option for CSV and JSON
## What changes were proposed in this pull request?

### Default - ISO 8601

Currently, CSV datasource is writing `Timestamp` and `Date` as numeric form and JSON datasource is writing both as below:

- CSV
  ```
  // TimestampType
  1414459800000000
  // DateType
  16673
  ```

- Json

  ```
  // TimestampType
  1970-01-01 11:46:40.0
  // DateType
  1970-01-01
  ```

So, for CSV we can't read back what we write and for JSON it becomes ambiguous because the timezone is being missed.

So, this PR make both **write** `Timestamp` and `Date` in ISO 8601 formatted string (please refer the [ISO 8601 specification](https://www.w3.org/TR/NOTE-datetime)).

- For `Timestamp` it becomes as below: (`yyyy-MM-dd'T'HH:mm:ss.SSSZZ`)

  ```
  1970-01-01T02:00:01.000-01:00
  ```

- For `Date` it becomes as below (`yyyy-MM-dd`)

  ```
  1970-01-01
  ```

### Custom date format option - `dateFormat`

This PR also adds the support to write and read dates and timestamps in a formatted string as below:

- **DateType**

  - With `dateFormat` option (e.g. `yyyy/MM/dd`)

    ```
    +----------+
    |      date|
    +----------+
    |2015/08/26|
    |2014/10/27|
    |2016/01/28|
    +----------+
    ```

### Custom date format option - `timestampFormat`

- **TimestampType**

  - With `dateFormat` option (e.g. `dd/MM/yyyy HH:mm`)

    ```
    +----------------+
    |            date|
    +----------------+
    |2015/08/26 18:00|
    |2014/10/27 18:30|
    |2016/01/28 20:00|
    +----------------+
    ```

## How was this patch tested?

Unit tests were added in `CSVSuite` and `JsonSuite`. For JSON, existing tests cover the default cases.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #14279 from HyukjinKwon/SPARK-16216-json-csv.
2016-08-24 22:16:20 +02:00
Wenchen Fan 52fa45d62a [SPARK-17186][SQL] remove catalog table type INDEX
## What changes were proposed in this pull request?

Actually Spark SQL doesn't support index, the catalog table type `INDEX` is from Hive. However, most operations in Spark SQL can't handle index table, e.g. create table, alter table, etc.

Logically index table should be invisible to end users, and Hive also generates special table name for index table to avoid users accessing it directly. Hive has special SQL syntax to create/show/drop index tables.

At Spark SQL side, although we can describe index table directly, but the result is unreadable, we should use the dedicated SQL syntax to do it(e.g. `SHOW INDEX ON tbl`). Spark SQL can also read index table directly, but the result is always empty.(Can hive read index table directly?)

This PR remove the table type `INDEX`, to make it clear that Spark SQL doesn't support index currently.

## How was this patch tested?

existing tests.

Author: Wenchen Fan <wenchen@databricks.com>

Closes #14752 from cloud-fan/minor2.
2016-08-23 23:46:09 -07:00
Davies Liu 9afdfc94f4 [SPARK-13286] [SQL] add the next expression of SQLException as cause
## What changes were proposed in this pull request?

Some JDBC driver (for example PostgreSQL) does not use the underlying exception as cause, but have another APIs (getNextException) to access that, so it it's included in the error logging, making us hard to find the root cause, especially in batch mode.

This PR will pull out the next exception and add it as cause (if it's different) or suppressed (if there is another different cause).

## How was this patch tested?

Can't reproduce this on the default JDBC driver, so did not add a regression test.

Author: Davies Liu <davies@databricks.com>

Closes #14722 from davies/keep_cause.
2016-08-23 09:45:13 -07:00
Jacek Laskowski 9d376ad76c [SPARK-17199] Use CatalystConf.resolver for case-sensitivity comparison
## What changes were proposed in this pull request?

Use `CatalystConf.resolver` consistently for case-sensitivity comparison (removed dups).

## How was this patch tested?

Local build. Waiting for Jenkins to ensure clean build and test.

Author: Jacek Laskowski <jacek@japila.pl>

Closes #14771 from jaceklaskowski/17199-catalystconf-resolver.
2016-08-23 12:59:25 +02:00
Sean Zhong cc33460a51 [SPARK-17188][SQL] Moves class QuantileSummaries to project catalyst for implementing percentile_approx
## What changes were proposed in this pull request?

This is a sub-task of [SPARK-16283](https://issues.apache.org/jira/browse/SPARK-16283) (Implement percentile_approx SQL function), which moves class QuantileSummaries to project catalyst so that it can be reused when implementing aggregation function `percentile_approx`.

## How was this patch tested?

This PR only does class relocation, class implementation is not changed.

Author: Sean Zhong <seanzhong@databricks.com>

Closes #14754 from clockfly/move_QuantileSummaries_to_catalyst.
2016-08-23 14:57:00 +08:00
gatorsmile 6d93f9e023 [SPARK-17144][SQL] Removal of useless CreateHiveTableAsSelectLogicalPlan
## What changes were proposed in this pull request?
`CreateHiveTableAsSelectLogicalPlan` is a dead code after refactoring.

## How was this patch tested?
N/A

Author: gatorsmile <gatorsmile@gmail.com>

Closes #14707 from gatorsmile/removeCreateHiveTable.
2016-08-23 08:03:08 +08:00
Eric Liang 84770b59f7 [SPARK-17162] Range does not support SQL generation
## What changes were proposed in this pull request?

The range operator previously didn't support SQL generation, which made it not possible to use in views.

## How was this patch tested?

Unit tests.

cc hvanhovell

Author: Eric Liang <ekl@databricks.com>

Closes #14724 from ericl/spark-17162.
2016-08-22 15:48:35 -07:00
Sean Zhong 929cb8beed [MINOR][SQL] Fix some typos in comments and test hints
## What changes were proposed in this pull request?

Fix some typos in comments and test hints

## How was this patch tested?

N/A.

Author: Sean Zhong <seanzhong@databricks.com>

Closes #14755 from clockfly/fix_minor_typo.
2016-08-22 13:31:38 -07:00
Davies Liu 8d35a6f68d [SPARK-17115][SQL] decrease the threshold when split expressions
## What changes were proposed in this pull request?

In 2.0, we change the threshold of splitting expressions from 16K to 64K, which cause very bad performance on wide table, because the generated method can't be JIT compiled by default (above the limit of 8K bytecode).

This PR will decrease it to 1K, based on the benchmark results for a wide table with 400 columns of LongType.

It also fix a bug around splitting expression in whole-stage codegen (it should not split them).

## How was this patch tested?

Added benchmark suite.

Author: Davies Liu <davies@databricks.com>

Closes #14692 from davies/split_exprs.
2016-08-22 16:16:03 +08:00
Wenchen Fan b2074b664a [SPARK-16498][SQL] move hive hack for data source table into HiveExternalCatalog
## What changes were proposed in this pull request?

Spark SQL doesn't have its own meta store yet, and use hive's currently. However, hive's meta store has some limitations(e.g. columns can't be too many, not case-preserving, bad decimal type support, etc.), so we have some hacks to successfully store data source table metadata into hive meta store, i.e. put all the information in table properties.

This PR moves these hacks to `HiveExternalCatalog`, tries to isolate hive specific logic in one place.

changes overview:

1.  **before this PR**: we need to put metadata(schema, partition columns, etc.) of data source tables to table properties before saving it to external catalog, even the external catalog doesn't use hive metastore(e.g. `InMemoryCatalog`)
**after this PR**: the table properties tricks are only in `HiveExternalCatalog`, the caller side doesn't need to take care of it anymore.

2. **before this PR**: because the table properties tricks are done outside of external catalog, so we also need to revert these tricks when we read the table metadata from external catalog and use it. e.g. in `DescribeTableCommand` we will read schema and partition columns from table properties.
**after this PR**: The table metadata read from external catalog is exactly the same with what we saved to it.

bonus: now we can create data source table using `SessionCatalog`, if schema is specified.
breaks: `schemaStringLengthThreshold` is not configurable anymore. `hive.default.rcfile.serde` is not configurable anymore.

## How was this patch tested?

existing tests.

Author: Wenchen Fan <wenchen@databricks.com>

Closes #14155 from cloud-fan/catalog-table.
2016-08-21 22:23:14 -07:00
Dongjoon Hyun 91c2397684 [SPARK-17098][SQL] Fix NullPropagation optimizer to handle COUNT(NULL) OVER correctly
## What changes were proposed in this pull request?

Currently, `NullPropagation` optimizer replaces `COUNT` on null literals in a bottom-up fashion. During that, `WindowExpression` is not covered properly. This PR adds the missing propagation logic.

**Before**
```scala
scala> sql("SELECT COUNT(1 + NULL) OVER ()").show
java.lang.UnsupportedOperationException: Cannot evaluate expression: cast(0 as bigint) windowspecdefinition(ROWS BETWEEN UNBOUNDED PRECEDING AND UNBOUNDED FOLLOWING)
```

**After**
```scala
scala> sql("SELECT COUNT(1 + NULL) OVER ()").show
+----------------------------------------------------------------------------------------------+
|count((1 + CAST(NULL AS INT))) OVER (ROWS BETWEEN UNBOUNDED PRECEDING AND UNBOUNDED FOLLOWING)|
+----------------------------------------------------------------------------------------------+
|                                                                                             0|
+----------------------------------------------------------------------------------------------+
```

## How was this patch tested?

Pass the Jenkins test with a new test case.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #14689 from dongjoon-hyun/SPARK-17098.
2016-08-21 22:07:47 +02:00
petermaxlee 9560c8d295 [SPARK-17124][SQL] RelationalGroupedDataset.agg should preserve order and allow multiple aggregates per column
## What changes were proposed in this pull request?
This patch fixes a longstanding issue with one of the RelationalGroupedDataset.agg function. Even though the signature accepts vararg of pairs, the underlying implementation turns the seq into a map, and thus not order preserving nor allowing multiple aggregates per column.

This change also allows users to use this function to run multiple different aggregations for a single column, e.g.
```
agg("age" -> "max", "age" -> "count")
```

## How was this patch tested?
Added a test case in DataFrameAggregateSuite.

Author: petermaxlee <petermaxlee@gmail.com>

Closes #14697 from petermaxlee/SPARK-17124.
2016-08-21 00:25:55 +08:00
Liang-Chi Hsieh 31a0155720 [SPARK-17104][SQL] LogicalRelation.newInstance should follow the semantics of MultiInstanceRelation
## What changes were proposed in this pull request?

Currently `LogicalRelation.newInstance()` simply creates another `LogicalRelation` object with the same parameters. However, the `newInstance()` method inherited from `MultiInstanceRelation` should return a copy of object with unique expression ids. Current `LogicalRelation.newInstance()` can cause failure when doing self-join.

## How was this patch tested?

Jenkins tests.

Author: Liang-Chi Hsieh <simonh@tw.ibm.com>

Closes #14682 from viirya/fix-localrelation.
2016-08-20 23:29:48 +08:00
petermaxlee 45d40d9f66 [SPARK-17150][SQL] Support SQL generation for inline tables
## What changes were proposed in this pull request?
This patch adds support for SQL generation for inline tables. With this, it would be possible to create a view that depends on inline tables.

## How was this patch tested?
Added a test case in LogicalPlanToSQLSuite.

Author: petermaxlee <petermaxlee@gmail.com>

Closes #14709 from petermaxlee/SPARK-17150.
2016-08-20 13:19:38 +08:00
Srinath Shankar ba1737c21a [SPARK-17158][SQL] Change error message for out of range numeric literals
## What changes were proposed in this pull request?

Modifies error message for numeric literals to
Numeric literal <literal> does not fit in range [min, max] for type <T>

## How was this patch tested?

Fixed up the error messages for literals.sql in  SqlQueryTestSuite and re-ran via sbt. Also fixed up error messages in ExpressionParserSuite

Author: Srinath Shankar <srinath@databricks.com>

Closes #14721 from srinathshankar/sc4296.
2016-08-19 19:54:26 -07:00
petermaxlee a117afa7c2 [SPARK-17149][SQL] array.sql for testing array related functions
## What changes were proposed in this pull request?
This patch creates array.sql in SQLQueryTestSuite for testing array related functions, including:

- indexing
- array creation
- size
- array_contains
- sort_array

## How was this patch tested?
The patch itself is about adding tests.

Author: petermaxlee <petermaxlee@gmail.com>

Closes #14708 from petermaxlee/SPARK-17149.
2016-08-19 18:14:45 -07:00
Reynold Xin 67e59d464f [SPARK-16994][SQL] Whitelist operators for predicate pushdown
## What changes were proposed in this pull request?
This patch changes predicate pushdown optimization rule (PushDownPredicate) from using a blacklist to a whitelist. That is to say, operators must be explicitly allowed. This approach is more future-proof: previously it was possible for us to introduce a new operator and then render the optimization rule incorrect.

This also fixes the bug that previously we allowed pushing filter beneath limit, which was incorrect. That is to say, before this patch, the optimizer would rewrite
```
select * from (select * from range(10) limit 5) where id > 3

to

select * from range(10) where id > 3 limit 5
```

## How was this patch tested?
- a unit test case in FilterPushdownSuite
- an end-to-end test in limit.sql

Author: Reynold Xin <rxin@databricks.com>

Closes #14713 from rxin/SPARK-16994.
2016-08-19 21:11:35 +08:00
petermaxlee f5472dda51 [SPARK-16947][SQL] Support type coercion and foldable expression for inline tables
## What changes were proposed in this pull request?
This patch improves inline table support with the following:

1. Support type coercion.
2. Support using foldable expressions. Previously only literals were supported.
3. Improve error message handling.
4. Improve test coverage.

## How was this patch tested?
Added a new unit test suite ResolveInlineTablesSuite and a new file-based end-to-end test inline-table.sql.

Author: petermaxlee <petermaxlee@gmail.com>

Closes #14676 from petermaxlee/SPARK-16947.
2016-08-19 09:19:47 +08:00
petermaxlee 68f5087d21 [SPARK-17117][SQL] 1 / NULL should not fail analysis
## What changes were proposed in this pull request?
This patch fixes the problem described in SPARK-17117, i.e. "SELECT 1 / NULL" throws an analysis exception:

```
org.apache.spark.sql.AnalysisException: cannot resolve '(1 / NULL)' due to data type mismatch: differing types in '(1 / NULL)' (int and null).
```

The problem is that division type coercion did not take null type into account.

## How was this patch tested?
A unit test for the type coercion, and a few end-to-end test cases using SQLQueryTestSuite.

Author: petermaxlee <petermaxlee@gmail.com>

Closes #14695 from petermaxlee/SPARK-17117.
2016-08-18 13:44:13 +02:00
Eric Liang 412dba63b5 [SPARK-17069] Expose spark.range() as table-valued function in SQL
## What changes were proposed in this pull request?

This adds analyzer rules for resolving table-valued functions, and adds one builtin implementation for range(). The arguments for range() are the same as those of `spark.range()`.

## How was this patch tested?

Unit tests.

cc hvanhovell

Author: Eric Liang <ekl@databricks.com>

Closes #14656 from ericl/sc-4309.
2016-08-18 13:33:55 +02:00