Commit graph

815 commits

Author SHA1 Message Date
Cheng Lian 8c321d66d7 [SPARK-8118] [SQL] Mutes noisy Parquet log output reappeared after upgrading Parquet to 1.7.0
Author: Cheng Lian <lian@databricks.com>

Closes #6670 from liancheng/spark-8118 and squashes the following commits:

b6e85a6 [Cheng Lian] Suppresses unnecesary ParquetRecordReader log message (PARQUET-220)
385603c [Cheng Lian] Mutes noisy Parquet log output reappeared after upgrading Parquet to 1.7.0
2015-06-07 16:59:55 +08:00
Liang-Chi Hsieh 26d07f1ece [SPARK-8141] [SQL] Precompute datatypes for partition columns and reuse it
JIRA: https://issues.apache.org/jira/browse/SPARK-8141

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #6687 from viirya/reuse_partition_column_types and squashes the following commits:

dab0688 [Liang-Chi Hsieh] Reuse partitionColumnTypes.
2015-06-07 15:33:48 +08:00
Liang-Chi Hsieh 901a552c5e [SPARK-8004][SQL] Enclose column names by JDBC Dialect
JIRA: https://issues.apache.org/jira/browse/SPARK-8004

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #6577 from viirya/enclose_jdbc_columns and squashes the following commits:

614606a [Liang-Chi Hsieh] For comment.
bc50182 [Liang-Chi Hsieh] Enclose column names by JDBC Dialect.
2015-06-06 22:59:31 -07:00
Cheng Lian 16fc49617e [SPARK-8079] [SQL] Makes InsertIntoHadoopFsRelation job/task abortion more robust
As described in SPARK-8079, when writing a DataFrame to a `HadoopFsRelation`, if `HadoopFsRelation.prepareForWriteJob` throws exception, an unexpected NPE will be thrown during job abortion. (This issue doesn't bring much damage since the job is failing anyway.)

This PR makes the job/task abortion logic in `InsertIntoHadoopFsRelation` more robust to avoid such confusing exceptions.

Author: Cheng Lian <lian@databricks.com>

Closes #6612 from liancheng/spark-8079 and squashes the following commits:

87cd81e [Cheng Lian] Addresses @rxin's comment
1864c75 [Cheng Lian] Addresses review comments
9e6dbb3 [Cheng Lian] Makes InsertIntoHadoopFsRelation job/task abortion more robust
2015-06-06 17:23:12 +08:00
Reynold Xin a71be0a36d [SPARK-8114][SQL] Remove some wildcard import on TestSQLContext._ round 3.
Author: Reynold Xin <rxin@databricks.com>

Closes #6677 from rxin/test-wildcard and squashes the following commits:

8a17b33 [Reynold Xin] Fixed line length.
6663813 [Reynold Xin] [SPARK-8114][SQL] Remove some wildcard import on TestSQLContext._ round 3.
2015-06-05 23:15:10 -07:00
Dong Wang eb19d3f75c [SPARK-6964] [SQL] Support Cancellation in the Thrift Server
Support runInBackground in SparkExecuteStatementOperation, and add cancellation

Author: Dong Wang <dong@databricks.com>

Closes #6207 from dongwang218/SPARK-6964-jdbc-cancel and squashes the following commits:

687c113 [Dong Wang] fix 100 characters
7bfa2a7 [Dong Wang] fix merge
380480f [Dong Wang] fix for liancheng's comments
eb3e385 [Dong Wang] small nit
341885b [Dong Wang] small fix
3d8ebf8 [Dong Wang] add spark.sql.hive.thriftServer.async flag
04142c3 [Dong Wang] set SQLSession for async execution
184ec35 [Dong Wang] keep hive conf
819ae03 [Dong Wang] [SPARK-6964][SQL][WIP] Support Cancellation in the Thrift Server
2015-06-05 17:41:12 -07:00
Reynold Xin 6ebe419f33 [SPARK-8114][SQL] Remove some wildcard import on TestSQLContext._ cont'd.
Fixed the following packages:
sql.columnar
sql.jdbc
sql.json
sql.parquet

Author: Reynold Xin <rxin@databricks.com>

Closes #6667 from rxin/testsqlcontext_wildcard and squashes the following commits:

134a776 [Reynold Xin] Fixed compilation break.
6da7b69 [Reynold Xin] [SPARK-8114][SQL] Remove some wildcard import on TestSQLContext._ cont'd.
2015-06-05 13:57:21 -07:00
Shivaram Venkataraman 12f5eaeee1 [SPARK-8085] [SPARKR] Support user-specified schema in read.df
cc davies sun-rui

Author: Shivaram Venkataraman <shivaram@cs.berkeley.edu>

Closes #6620 from shivaram/sparkr-read-schema and squashes the following commits:

16a6726 [Shivaram Venkataraman] Fix loadDF to pass schema Also add a unit test
a229877 [Shivaram Venkataraman] Use wrapper function to DataFrameReader
ee70ba8 [Shivaram Venkataraman] Support user-specified schema in read.df
2015-06-05 10:19:03 -07:00
Reynold Xin 8f16b94afb [SPARK-8114][SQL] Remove some wildcard import on TestSQLContext._
I kept some of the sql import there to avoid changing too many lines.

Author: Reynold Xin <rxin@databricks.com>

Closes #6661 from rxin/remove-wildcard-import-sqlcontext and squashes the following commits:

c265347 [Reynold Xin] Fixed ListTablesSuite failure.
de9d491 [Reynold Xin] Fixed tests.
73b5365 [Reynold Xin] Mima.
8f6b642 [Reynold Xin] Fixed style violation.
443f6e8 [Reynold Xin] [SPARK-8113][SQL] Remove some wildcard import on TestSQLContext._
2015-06-04 22:15:58 -07:00
Reynold Xin 2bcdf8c239 [SPARK-7440][SQL] Remove physical Distinct operator in favor of Aggregate
This patch replaces Distinct with Aggregate in the optimizer, so Distinct will become
more efficient over time as we optimize Aggregate (via Tungsten).

Author: Reynold Xin <rxin@databricks.com>

Closes #6637 from rxin/replace-distinct and squashes the following commits:

b3cc50e [Reynold Xin] Mima excludes.
93d6117 [Reynold Xin] Code review feedback.
87e4741 [Reynold Xin] [SPARK-7440][SQL] Remove physical Distinct operator in favor of Aggregate.
2015-06-04 13:52:53 -07:00
Thomas Omans cd3176bd86 [SPARK-7743] [SQL] Parquet 1.7
Resolves [SPARK-7743](https://issues.apache.org/jira/browse/SPARK-7743).

Trivial changes of versions, package names, as well as a small issue in `ParquetTableOperations.scala`

```diff
-    val readContext = getReadSupport(configuration).init(
+    val readContext = ParquetInputFormat.getReadSupportInstance(configuration).init(
```

Since ParquetInputFormat.getReadSupport was made package private in the latest release.

Thanks
-- Thomas Omans

Author: Thomas Omans <tomans@cj.com>

Closes #6597 from eggsby/SPARK-7743 and squashes the following commits:

2df0d1b [Thomas Omans] [SPARK-7743] [SQL] Upgrading parquet version to 1.7.0
2015-06-04 11:32:03 -07:00
Mike Dusenberry df7da07a86 [SPARK-7969] [SQL] Added a DataFrame.drop function that accepts a Column reference.
Added a `DataFrame.drop` function that accepts a `Column` reference rather than a `String`, and added associated unit tests.  Basically iterates through the `DataFrame` to find a column with an expression that is equivalent to that of the `Column` argument supplied to the function.

Author: Mike Dusenberry <dusenberrymw@gmail.com>

Closes #6585 from dusenberrymw/SPARK-7969_Drop_method_on_Dataframes_should_handle_Column and squashes the following commits:

514727a [Mike Dusenberry] Updating the @since tag of the drop(Column) function doc to reflect version 1.4.1 instead of 1.4.0.
2f1bb4e [Mike Dusenberry] Adding an additional assert statement to the 'drop column after join' unit test in order to make sure the correct column was indeed left over.
6bf7c0e [Mike Dusenberry] Minor code formatting change.
e583888 [Mike Dusenberry] Adding more Python doctests for the df.drop with column reference function to test joined datasets that have columns with the same name.
5f74401 [Mike Dusenberry] Updating DataFrame.drop with column reference function to use logicalPlan.output to prevent ambiguities resulting from columns with the same name. Also added associated unit tests for joined datasets with duplicate column names.
4b8bbe8 [Mike Dusenberry] Adding Python support for Dataframe.drop with a Column reference.
986129c [Mike Dusenberry] Added a DataFrame.drop function that accepts a Column reference rather than a String, and added associated unit tests.  Basically iterates through the DataFrame to find a column with an expression that is equivalent to one supplied to the function.
2015-06-04 11:30:07 -07:00
Davies Liu c8709dcfd1 [SPARK-7956] [SQL] Use Janino to compile SQL expressions into bytecode
In order to reduce the overhead of codegen, this PR switch to use Janino to compile SQL expressions into bytecode.

After this, the time used to compile a SQL expression is decreased from 100ms to 5ms, which is necessary to turn on codegen for general workload, also tests.

cc rxin

Author: Davies Liu <davies@databricks.com>

Closes #6479 from davies/janino and squashes the following commits:

cc689f5 [Davies Liu] remove globalLock
262d848 [Davies Liu] Merge branch 'master' of github.com:apache/spark into janino
eec3a33 [Davies Liu] address comments from Josh
f37c8c3 [Davies Liu] fix DecimalType and cast to String
202298b [Davies Liu] Merge branch 'master' of github.com:apache/spark into janino
a21e968 [Davies Liu] fix style
0ed3dc6 [Davies Liu] Merge branch 'master' of github.com:apache/spark into janino
551a851 [Davies Liu] fix tests
c3bdffa [Davies Liu] remove print
6089ce5 [Davies Liu] change logging level
7e46ac3 [Davies Liu] fix style
d8f0f6c [Davies Liu] Merge branch 'master' of github.com:apache/spark into janino
da4926a [Davies Liu] fix tests
03660f3 [Davies Liu] WIP: use Janino to compile Java source
f2629cd [Davies Liu] Merge branch 'master' of github.com:apache/spark into janino
f7d66cf [Davies Liu] use template based string for codegen
2015-06-04 10:28:59 -07:00
Reynold Xin 2c5a06cafd Update documentation for [SPARK-7980] [SQL] Support SQLContext.range(end) 2015-06-03 14:20:27 -07:00
Reynold Xin 939e4f3d8d [SPARK-8074] Parquet should throw AnalysisException during setup for data type/name related failures.
Author: Reynold Xin <rxin@databricks.com>

Closes #6608 from rxin/parquet-analysis and squashes the following commits:

b5dc8e2 [Reynold Xin] Code review feedback.
5617cf6 [Reynold Xin] [SPARK-8074] Parquet should throw AnalysisException during setup for data type/name related failures.
2015-06-03 13:57:57 -07:00
animesh d053a31be9 [SPARK-7980] [SQL] Support SQLContext.range(end)
1. range() overloaded in SQLContext.scala
2. range() modified in python sql context.py
3. Tests added accordingly in DataFrameSuite.scala and python sql tests.py

Author: animesh <animesh@apache.spark>

Closes #6609 from animeshbaranawal/SPARK-7980 and squashes the following commits:

935899c [animesh] SPARK-7980:python+scala changes
2015-06-03 11:28:18 -07:00
Patrick Wendell 2c4d550eda [SPARK-7801] [BUILD] Updating versions to SPARK 1.5.0
Author: Patrick Wendell <patrick@databricks.com>

Closes #6328 from pwendell/spark-1.5-update and squashes the following commits:

2f42d02 [Patrick Wendell] A few more excludes
4bebcf0 [Patrick Wendell] Update to RC4
61aaf46 [Patrick Wendell] Using new release candidate
55f1610 [Patrick Wendell] Another exclude
04b4f04 [Patrick Wendell] More issues with transient 1.4 changes
36f549b [Patrick Wendell] [SPARK-7801] [BUILD] Updating versions to SPARK 1.5.0
2015-06-03 10:11:27 -07:00
Wenchen Fan d38cf217e0 [SPARK-7562][SPARK-6444][SQL] Improve error reporting for expression data type mismatch
It seems hard to find a common pattern of checking types in `Expression`. Sometimes we know what input types we need(like `And`, we know we need two booleans), sometimes we just have some rules(like `Add`, we need 2 numeric types which are equal). So I defined a general interface `checkInputDataTypes` in `Expression` which returns a `TypeCheckResult`. `TypeCheckResult` can tell whether this expression passes the type checking or what the type mismatch is.

This PR mainly works on apply input types checking for arithmetic and predicate expressions.

TODO: apply type checking interface to more expressions.

Author: Wenchen Fan <cloud0fan@outlook.com>

Closes #6405 from cloud-fan/6444 and squashes the following commits:

b5ff31b [Wenchen Fan] address comments
b917275 [Wenchen Fan] rebase
39929d9 [Wenchen Fan] add todo
0808fd2 [Wenchen Fan] make constrcutor of TypeCheckResult private
3bee157 [Wenchen Fan] and decimal type coercion rule for binary comparison
8883025 [Wenchen Fan] apply type check interface to CaseWhen
cffb67c [Wenchen Fan] to have resolved call the data type check function
6eaadff [Wenchen Fan] add equal type constraint to EqualTo
3affbd8 [Wenchen Fan] more fixes
654d46a [Wenchen Fan] improve tests
e0a3628 [Wenchen Fan] improve error message
1524ff6 [Wenchen Fan] fix style
69ca3fe [Wenchen Fan] add error message and tests
c71d02c [Wenchen Fan] fix hive tests
6491721 [Wenchen Fan] use value class TypeCheckResult
7ae76b9 [Wenchen Fan] address comments
cb77e4f [Wenchen Fan] Improve error reporting for expression data type mismatch
2015-06-03 00:47:52 -07:00
Josh Rosen cafd5056e1 [SPARK-7691] [SQL] Refactor CatalystTypeConverter to use type-specific row accessors
This patch significantly refactors CatalystTypeConverters to both clean up the code and enable these conversions to work with future Project Tungsten features.

At a high level, I've reorganized the code so that all functions dealing with the same type are grouped together into type-specific subclasses of `CatalystTypeConveter`.  In addition, I've added new methods that allow the Catalyst Row -> Scala Row conversions to access the Catalyst row's fields through type-specific `getTYPE()` methods rather than the generic `get()` / `Row.apply` methods.  This refactoring is a blocker to being able to unit test new operators that I'm developing as part of Project Tungsten, since those operators may output `UnsafeRow` instances which don't support the generic `get()`.

The stricter type usage of types here has uncovered some bugs in other parts of Spark SQL:

- #6217: DescribeCommand is assigned wrong output attributes in SparkStrategies
- #6218: DataFrame.describe() should cast all aggregates to String
- #6400: Use output schema, not relation schema, for data source input conversion

Spark SQL current has undefined behavior for what happens when you try to create a DataFrame from user-specified rows whose values don't match the declared schema.  According to the `createDataFrame()` Scaladoc:

>  It is important to make sure that the structure of every [[Row]] of the provided RDD matches the provided schema. Otherwise, there will be runtime exception.

Given this, it sounds like it's technically not a break of our API contract to fail-fast when the data types don't match. However, there appear to be many cases where we don't fail even though the types don't match. For example, `JavaHashingTFSuite.hasingTF` passes a column of integers values for a "label" column which is supposed to contain floats.  This column isn't actually read or modified as part of query processing, so its actual concrete type doesn't seem to matter. In other cases, there could be situations where we have generic numeric aggregates that tolerate being called with different numeric types than the schema specified, but this can be okay due to numeric conversions.

In the long run, we will probably want to come up with precise semantics for implicit type conversions / widening when converting Java / Scala rows to Catalyst rows.  Until then, though, I think that failing fast with a ClassCastException is a reasonable behavior; this is the approach taken in this patch.  Note that certain optimizations in the inbound conversion functions for primitive types mean that we'll probably preserve the old undefined behavior in a majority of cases.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #6222 from JoshRosen/catalyst-converters-refactoring and squashes the following commits:

740341b [Josh Rosen] Optimize method dispatch for primitive type conversions
befc613 [Josh Rosen] Add tests to document Option-handling behavior.
5989593 [Josh Rosen] Use new SparkFunSuite base in CatalystTypeConvertersSuite
6edf7f8 [Josh Rosen] Re-add convertToScala(), since a Hive test still needs it
3f7b2d8 [Josh Rosen] Initialize converters lazily so that the attributes are resolved first
6ad0ebb [Josh Rosen] Fix JavaHashingTFSuite ClassCastException
677ff27 [Josh Rosen] Fix null handling bug; add tests.
8033d4c [Josh Rosen] Fix serialization error in UserDefinedGenerator.
85bba9d [Josh Rosen] Fix wrong input data in InMemoryColumnarQuerySuite
9c0e4e1 [Josh Rosen] Remove last use of convertToScala().
ae3278d [Josh Rosen] Throw ClassCastException errors during inbound conversions.
7ca7fcb [Josh Rosen] Comments and cleanup
1e87a45 [Josh Rosen] WIP refactoring of CatalystTypeConverters
2015-06-02 22:11:03 -07:00
Cheng Lian 686a45f0b9 [SPARK-8014] [SQL] Avoid premature metadata discovery when writing a HadoopFsRelation with a save mode other than Append
The current code references the schema of the DataFrame to be written before checking save mode. This triggers expensive metadata discovery prematurely. For save mode other than `Append`, this metadata discovery is useless since we either ignore the result (for `Ignore` and `ErrorIfExists`) or delete existing files (for `Overwrite`) later.

This PR fixes this issue by deferring metadata discovery after save mode checking.

Author: Cheng Lian <lian@databricks.com>

Closes #6583 from liancheng/spark-8014 and squashes the following commits:

1aafabd [Cheng Lian] Updates comments
088abaa [Cheng Lian] Avoids schema merging and partition discovery when data schema and partition schema are defined
8fbd93f [Cheng Lian] Fixes SPARK-8014
2015-06-02 13:32:13 -07:00
Cheng Lian 1bb5d716c0 [SPARK-8037] [SQL] Ignores files whose name starts with dot in HadoopFsRelation
Author: Cheng Lian <lian@databricks.com>

Closes #6581 from liancheng/spark-8037 and squashes the following commits:

d08e97b [Cheng Lian] Ignores files whose name starts with dot in HadoopFsRelation
2015-06-03 00:59:50 +08:00
Yin Huai 0f80990bfa [SPARK-8023][SQL] Add "deterministic" attribute to Expression to avoid collapsing nondeterministic projects.
This closes #6570.

Author: Yin Huai <yhuai@databricks.com>
Author: Reynold Xin <rxin@databricks.com>

Closes #6573 from rxin/deterministic and squashes the following commits:

356cd22 [Reynold Xin] Added unit test for the optimizer.
da3fde1 [Reynold Xin] Merge pull request #6570 from yhuai/SPARK-8023
da56200 [Yin Huai] Comments.
e38f264 [Yin Huai] Comment.
f9d6a73 [Yin Huai] Add a deterministic method to Expression.
2015-06-02 00:20:52 -07:00
Yin Huai 7b7f7b6c6f [SPARK-8020] [SQL] Spark SQL conf in spark-defaults.conf make metadataHive get constructed too early
https://issues.apache.org/jira/browse/SPARK-8020

Author: Yin Huai <yhuai@databricks.com>

Closes #6571 from yhuai/SPARK-8020-1 and squashes the following commits:

0398f5b [Yin Huai] First populate the SQLConf and then construct executionHive and metadataHive.
2015-06-02 00:16:56 -07:00
Davies Liu bcb47ad771 [SPARK-6917] [SQL] DecimalType is not read back when non-native type exists
cc yhuai

Author: Davies Liu <davies@databricks.com>

Closes #6558 from davies/decimalType and squashes the following commits:

c877ca8 [Davies Liu] Update ParquetConverter.scala
48cc57c [Davies Liu] Update ParquetConverter.scala
b43845c [Davies Liu] add test
3b4a94f [Davies Liu] DecimalType is not read back when non-native type exists
2015-06-01 23:12:29 -07:00
Reynold Xin 75dda33f3e Revert "[SPARK-8020] Spark SQL in spark-defaults.conf make metadataHive get constructed too early"
This reverts commit 91f6be87bc.
2015-06-01 21:35:55 -07:00
Yin Huai 91f6be87bc [SPARK-8020] Spark SQL in spark-defaults.conf make metadataHive get constructed too early
https://issues.apache.org/jira/browse/SPARK-8020

Author: Yin Huai <yhuai@databricks.com>

Closes #6563 from yhuai/SPARK-8020 and squashes the following commits:

4e5addc [Yin Huai] style
bf766c6 [Yin Huai] Failed test.
0398f5b [Yin Huai] First populate the SQLConf and then construct executionHive and metadataHive.
2015-06-01 21:33:57 -07:00
Reynold Xin 4c868b9943 [minor doc] Add exploratory data analysis warning for DataFrame.stat.freqItem API
Author: Reynold Xin <rxin@databricks.com>

Closes #6569 from rxin/freqItemsWarning and squashes the following commits:

7eec145 [Reynold Xin] [minor doc] Add exploratory data analysis warning for DataFrame.stat.freqItem API.
2015-06-01 21:29:39 -07:00
Reynold Xin 89f642a0e8 [SPARK-8026][SQL] Add Column.alias to Scala/Java DataFrame API
Author: Reynold Xin <rxin@databricks.com>

Closes #6565 from rxin/alias and squashes the following commits:

286d880 [Reynold Xin] [SPARK-8026][SQL] Add Column.alias to Scala/Java DataFrame API
2015-06-01 21:13:15 -07:00
Reynold Xin 6396cc0303 [SPARK-7982][SQL] DataFrame.stat.crosstab should use 0 instead of null for pairs that don't appear
Author: Reynold Xin <rxin@databricks.com>

Closes #6566 from rxin/crosstab and squashes the following commits:

e0ace1c [Reynold Xin] [SPARK-7982][SQL] DataFrame.stat.crosstab should use 0 instead of null for pairs that don't appear
2015-06-01 21:11:19 -07:00
Wenchen Fan a0e46a0d2a [SPARK-7952][SPARK-7984][SQL] equality check between boolean type and numeric type is broken.
The origin code has several problems:
* `true <=> 1` will return false as we didn't set a rule to handle it.
* `true = a` where `a` is not `Literal` and its value is 1, will return false as we only handle literal values.

Author: Wenchen Fan <cloud0fan@outlook.com>

Closes #6505 from cloud-fan/tmp1 and squashes the following commits:

77f0f39 [Wenchen Fan] minor fix
b6401ba [Wenchen Fan] add type coercion for CaseKeyWhen and address comments
ebc8c61 [Wenchen Fan] use SQLTestUtils and If
625973c [Wenchen Fan] improve
9ba2130 [Wenchen Fan] address comments
fc0d741 [Wenchen Fan] fix style
2846a04 [Wenchen Fan] fix 7952
2015-05-31 21:01:46 -07:00
Reynold Xin 866652c903 [SPARK-3850] Turn style checker on for trailing whitespaces.
Author: Reynold Xin <rxin@databricks.com>

Closes #6541 from rxin/trailing-whitespace-on and squashes the following commits:

f72ebe4 [Reynold Xin] [SPARK-3850] Turn style checker on for trailing whitespaces.
2015-05-31 14:23:42 -07:00
Reynold Xin 63a50be13d [SPARK-3850] Trim trailing spaces for SQL.
Author: Reynold Xin <rxin@databricks.com>

Closes #6535 from rxin/whitespace-sql and squashes the following commits:

de50316 [Reynold Xin] [SPARK-3850] Trim trailing spaces for SQL.
2015-05-31 00:48:49 -07:00
Reynold Xin 7896e99b2a [SPARK-7975] Add style checker to disallow overriding equals covariantly.
Author: Reynold Xin <rxin@databricks.com>

This patch had conflicts when merged, resolved by
Committer: Reynold Xin <rxin@databricks.com>

Closes #6527 from rxin/covariant-equals and squashes the following commits:

e7d7784 [Reynold Xin] [SPARK-7975] Enforce CovariantEqualsChecker
2015-05-31 00:05:55 -07:00
Cheng Lian 8764dccebd [SQL] [MINOR] Adds @deprecated Scaladoc entry for SchemaRDD
Author: Cheng Lian <lian@databricks.com>

Closes #6529 from liancheng/schemardd-deprecation-fix and squashes the following commits:

49765c2 [Cheng Lian] Adds @deprecated Scaladoc entry for SchemaRDD
2015-05-30 23:49:42 -07:00
Reynold Xin c63e1a742b [SPARK-7971] Add JavaDoc style deprecation for deprecated DataFrame methods
Scala deprecated annotation actually doesn't show up in JavaDoc.

Author: Reynold Xin <rxin@databricks.com>

Closes #6523 from rxin/df-deprecated-javadoc and squashes the following commits:

26da2b2 [Reynold Xin] [SPARK-7971] Add JavaDoc style deprecation for deprecated DataFrame methods.
2015-05-30 19:51:53 -07:00
Reynold Xin 14b314dc2c [SQL] Tighten up visibility for JavaDoc.
I went through all the JavaDocs and tightened up visibility.

Author: Reynold Xin <rxin@databricks.com>

Closes #6526 from rxin/sql-1.4-visibility-for-docs and squashes the following commits:

bc37d1e [Reynold Xin] Tighten up visibility for JavaDoc.
2015-05-30 19:50:52 -07:00
Andrew Or 8c9979337f [HOTFIX] [SQL] Maven test compilation issue
Tests compile in SBT but not Maven.
2015-05-29 15:26:49 -07:00
Andrew Or 9eb222c139 [SPARK-7558] Demarcate tests in unit-tests.log
Right now `unit-tests.log` are not of much value because we can't tell where the test boundaries are easily. This patch adds log statements before and after each test to outline the test boundaries, e.g.:

```
===== TEST OUTPUT FOR o.a.s.serializer.KryoSerializerSuite: 'kryo with parallelize for primitive arrays' =====

15/05/27 12:36:39.596 pool-1-thread-1-ScalaTest-running-KryoSerializerSuite INFO SparkContext: Starting job: count at KryoSerializerSuite.scala:230
15/05/27 12:36:39.596 dag-scheduler-event-loop INFO DAGScheduler: Got job 3 (count at KryoSerializerSuite.scala:230) with 4 output partitions (allowLocal=false)
15/05/27 12:36:39.596 dag-scheduler-event-loop INFO DAGScheduler: Final stage: ResultStage 3(count at KryoSerializerSuite.scala:230)
15/05/27 12:36:39.596 dag-scheduler-event-loop INFO DAGScheduler: Parents of final stage: List()
15/05/27 12:36:39.597 dag-scheduler-event-loop INFO DAGScheduler: Missing parents: List()
15/05/27 12:36:39.597 dag-scheduler-event-loop INFO DAGScheduler: Submitting ResultStage 3 (ParallelCollectionRDD[5] at parallelize at KryoSerializerSuite.scala:230), which has no missing parents

...

15/05/27 12:36:39.624 pool-1-thread-1-ScalaTest-running-KryoSerializerSuite INFO DAGScheduler: Job 3 finished: count at KryoSerializerSuite.scala:230, took 0.028563 s
15/05/27 12:36:39.625 pool-1-thread-1-ScalaTest-running-KryoSerializerSuite INFO KryoSerializerSuite:

***** FINISHED o.a.s.serializer.KryoSerializerSuite: 'kryo with parallelize for primitive arrays' *****

...
```

Author: Andrew Or <andrew@databricks.com>

Closes #6441 from andrewor14/demarcate-tests and squashes the following commits:

879b060 [Andrew Or] Fix compile after rebase
d622af7 [Andrew Or] Merge branch 'master' of github.com:apache/spark into demarcate-tests
017c8ba [Andrew Or] Merge branch 'master' of github.com:apache/spark into demarcate-tests
7790b6c [Andrew Or] Fix tests after logical merge conflict
c7460c0 [Andrew Or] Merge branch 'master' of github.com:apache/spark into demarcate-tests
c43ffc4 [Andrew Or] Fix tests?
8882581 [Andrew Or] Fix tests
ee22cda [Andrew Or] Fix log message
fa9450e [Andrew Or] Merge branch 'master' of github.com:apache/spark into demarcate-tests
12d1e1b [Andrew Or] Various whitespace changes (minor)
69cbb24 [Andrew Or] Make all test suites extend SparkFunSuite instead of FunSuite
bbce12e [Andrew Or] Fix manual things that cannot be covered through automation
da0b12f [Andrew Or] Add core tests as dependencies in all modules
f7d29ce [Andrew Or] Introduce base abstract class for all test suites
2015-05-29 14:03:12 -07:00
Reynold Xin 94f62a4979 [SPARK-7940] Enforce whitespace checking for DO, TRY, CATCH, FINALLY, MATCH, LARROW, RARROW in style checker.
…

Author: Reynold Xin <rxin@databricks.com>

Closes #6491 from rxin/more-whitespace and squashes the following commits:

f6e63dc [Reynold Xin] [SPARK-7940] Enforce whitespace checking for DO, TRY, CATCH, FINALLY, MATCH, LARROW, RARROW in style checker.
2015-05-29 13:38:37 -07:00
Reynold Xin ff44c711ab [SPARK-7927] whitespace fixes for SQL core.
So we can enable a whitespace enforcement rule in the style checker to save code review time.

Author: Reynold Xin <rxin@databricks.com>

Closes #6477 from rxin/whitespace-sql-core and squashes the following commits:

ce6e369 [Reynold Xin] Fixed tests.
6095fed [Reynold Xin] [SPARK-7927] whitespace fixes for SQL core.
2015-05-28 20:10:21 -07:00
Liang-Chi Hsieh a1e092eae5 [SPARK-7897][SQL] Use DecimalType to represent unsigned bigint in JDBCRDD
JIRA: https://issues.apache.org/jira/browse/SPARK-7897

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #6438 from viirya/jdbc_unsigned_bigint and squashes the following commits:

ccb3c3f [Liang-Chi Hsieh] Use DecimalType to represent unsigned bigint.
2015-05-27 18:51:36 -07:00
Cheng Lian b97ddff000 [SPARK-7684] [SQL] Refactoring MetastoreDataSourcesSuite to workaround SPARK-7684
As stated in SPARK-7684, currently `TestHive.reset` has some execution order specific bug, which makes running specific test suites locally pretty frustrating. This PR refactors `MetastoreDataSourcesSuite` (which relies on `TestHive.reset` heavily) using various `withXxx` utility methods in `SQLTestUtils` to ask each test case to cleanup their own mess so that we can avoid calling `TestHive.reset`.

Author: Cheng Lian <lian@databricks.com>
Author: Yin Huai <yhuai@databricks.com>

Closes #6353 from liancheng/workaround-spark-7684 and squashes the following commits:

26939aa [Yin Huai] Move the initialization of jsonFilePath to beforeAll.
a423d48 [Cheng Lian] Fixes Scala style issue
dfe45d0 [Cheng Lian] Refactors MetastoreDataSourcesSuite to workaround SPARK-7684
92a116d [Cheng Lian] Fixes minor styling issues
2015-05-27 13:09:33 -07:00
Reynold Xin 6fec1a9409 Removed Guava dependency from JavaTypeInference's type signature.
This should also close #6243.

Author: Reynold Xin <rxin@databricks.com>

Closes #6431 from rxin/JavaTypeInference-guava and squashes the following commits:

e58df3c [Reynold Xin] Removed Gauva dependency from JavaTypeInference's type signature.
2015-05-27 11:54:35 -07:00
Cheng Lian 15459db4f6 [SPARK-7847] [SQL] Fixes dynamic partition directory escaping
Please refer to [SPARK-7847] [1] for details.

[1]: https://issues.apache.org/jira/browse/SPARK-7847

Author: Cheng Lian <lian@databricks.com>

Closes #6389 from liancheng/spark-7847 and squashes the following commits:

935c652 [Cheng Lian] Adds test case for writing various data types as dynamic partition value
f4fc398 [Cheng Lian] Converts partition columns to Scala type when writing dynamic partitions
d0aeca0 [Cheng Lian] Fixes dynamic partition directory escaping
2015-05-27 10:09:12 -07:00
Reynold Xin 9f48bf6b37 [SPARK-7887][SQL] Remove EvaluatedType from SQL Expression.
This type is not really used. Might as well remove it.

Author: Reynold Xin <rxin@databricks.com>

Closes #6427 from rxin/evalutedType and squashes the following commits:

51a319a [Reynold Xin] [SPARK-7887][SQL] Remove EvaluatedType from SQL Expression.
2015-05-27 01:12:59 -07:00
Liang-Chi Hsieh 4f98d7a7f1 [SPARK-7697][SQL] Use LongType for unsigned int in JDBCRDD
JIRA: https://issues.apache.org/jira/browse/SPARK-7697

The reported problem case is mysql. But for h2 db, there is no unsigned int. So it is not able to add corresponding test.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #6229 from viirya/unsignedint_as_long and squashes the following commits:

dc4b5d8 [Liang-Chi Hsieh] Merge remote-tracking branch 'upstream/master' into unsignedint_as_long
608695b [Liang-Chi Hsieh] Use LongType for unsigned int in JDBCRDD.
2015-05-27 00:27:39 -07:00
Cheng Lian b463e6d618 [SPARK-7868] [SQL] Ignores _temporary directories in HadoopFsRelation
So that potential partial/corrupted data files left by failed tasks/jobs won't affect normal data scan.

Author: Cheng Lian <lian@databricks.com>

Closes #6411 from liancheng/spark-7868 and squashes the following commits:

273ea36 [Cheng Lian] Ignores _temporary directories
2015-05-26 20:48:56 -07:00
Josh Rosen 0c33c7b4a6 [SPARK-7858] [SQL] Use output schema, not relation schema, for data source input conversion
In `DataSourceStrategy.createPhysicalRDD`, we use the relation schema as the target schema for converting incoming rows into Catalyst rows.  However, we should be using the output schema instead, since our scan might return a subset of the relation's columns.

This patch incorporates #6414 by liancheng, which fixes an issue in `SimpleTestRelation` that prevented this bug from being caught by our old tests:

> In `SimpleTextRelation`, we specified `needsConversion` to `true`, indicating that values produced by this testing relation should be of Scala types, and need to be converted to Catalyst types when necessary. However, we also used `Cast` to convert strings to expected data types. And `Cast` always produces values of Catalyst types, thus no conversion is done at all. This PR makes `SimpleTextRelation` produce Scala values so that data conversion code paths can be properly tested.

Closes #5986.

Author: Josh Rosen <joshrosen@databricks.com>
Author: Cheng Lian <lian@databricks.com>
Author: Cheng Lian <liancheng@users.noreply.github.com>

Closes #6400 from JoshRosen/SPARK-7858 and squashes the following commits:

e71c866 [Josh Rosen] Re-fix bug so that the tests pass again
56b13e5 [Josh Rosen] Add regression test to hadoopFsRelationSuites
2169a0f [Josh Rosen] Remove use of SpecificMutableRow and BufferedIterator
6cd7366 [Josh Rosen] Fix SPARK-7858 by using output types for conversion.
5a00e66 [Josh Rosen] Add assertions in order to reproduce SPARK-7858
8ba195c [Cheng Lian] Merge 9968fba9979287aaa1f141ba18bfb9d4c116a3b3 into 61664732b2
9968fba [Cheng Lian] Tests the data type conversion code paths
2015-05-26 20:24:35 -07:00
Cheng Lian 8af1bf10b7 [SPARK-7842] [SQL] Makes task committing/aborting in InsertIntoHadoopFsRelation more robust
When committing/aborting a write task issued in `InsertIntoHadoopFsRelation`, if an exception is thrown from `OutputWriter.close()`, the committing/aborting process will be interrupted, and leaves messy stuff behind (e.g., the `_temporary` directory created by `FileOutputCommitter`).

This PR makes these two process more robust by catching potential exceptions and falling back to normal task committment/abort.

Author: Cheng Lian <lian@databricks.com>

Closes #6378 from liancheng/spark-7838 and squashes the following commits:

f18253a [Cheng Lian] Makes task committing/aborting in InsertIntoHadoopFsRelation more robust
2015-05-26 00:28:47 +08:00
Yin Huai ed21476bc0 [SPARK-7805] [SQL] Move SQLTestUtils.scala and ParquetTest.scala to src/test
https://issues.apache.org/jira/browse/SPARK-7805

Because `sql/hive`'s tests depend on the test jar of `sql/core`, we do not need to store `SQLTestUtils` and `ParquetTest` in `src/main`. We should only add stuff that will be needed by `sql/console` or Python tests (for Python, we need it in `src/main`, right? davies).

Author: Yin Huai <yhuai@databricks.com>

Closes #6334 from yhuai/SPARK-7805 and squashes the following commits:

af6d0c9 [Yin Huai] mima
b86746a [Yin Huai] Move SQLTestUtils.scala and ParquetTest.scala to src/test.
2015-05-24 09:51:37 -07:00