Commit graph

5209 commits

Author SHA1 Message Date
Josh Rosen 8e19c7663a [SPARK-7689] Remove TTL-based metadata cleaning in Spark 2.0
This PR removes `spark.cleaner.ttl` and the associated TTL-based metadata cleaning code.

Now that we have the `ContextCleaner` and a timer to trigger periodic GCs, I don't think that `spark.cleaner.ttl` is necessary anymore. The TTL-based cleaning isn't enabled by default, isn't included in our end-to-end tests, and has been a source of user confusion when it is misconfigured. If the TTL is set too low, data which is still being used may be evicted / deleted, leading to hard to diagnose bugs.

For all of these reasons, I think that we should remove this functionality in Spark 2.0. Additional benefits of doing this include marginally reduced memory usage, since we no longer need to store timetsamps in hashmaps, and a handful fewer threads.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #10534 from JoshRosen/remove-ttl-based-cleaning.
2016-01-06 20:50:31 -08:00
Nong Li a74d743cc7 [SPARK-12640][SQL] Add simple benchmarking utility class and add Parquet scan benchmarks.
[SPARK-12640][SQL] Add simple benchmarking utility class and add Parquet scan benchmarks.

We've run benchmarks ad hoc to measure the scanner performance. We will continue to invest in this
and it makes sense to get these benchmarks into code. This adds a simple benchmarking utility to do
this.

Author: Nong Li <nong@databricks.com>
Author: Nong <nongli@gmail.com>

Closes #10589 from nongli/spark-12640.
2016-01-06 19:20:43 -08:00
Sean Owen ac56cf605b [SPARK-12604][CORE] Java count(AprroxDistinct)ByKey methods return Scala Long not Java
Change Java countByKey, countApproxDistinctByKey return types to use Java Long, not Scala; update similar methods for consistency on java.long.Long.valueOf with no API change

Author: Sean Owen <sowen@cloudera.com>

Closes #10554 from srowen/SPARK-12604.
2016-01-06 17:17:32 -08:00
Kousuke Saruta 94c202c7d2 [SPARK-12665][CORE][GRAPHX] Remove Vector, VectorSuite and GraphKryoRegistrator which are deprecated and no longer used
Whole code of Vector.scala, VectorSuite.scala and GraphKryoRegistrator.scala  are no longer used so it's time to remove them in Spark 2.0.

Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp>

Closes #10613 from sarutak/SPARK-12665.
2016-01-06 10:19:41 -08:00
QiangCai 5d871ea43e [SPARK-12340][SQL] fix Int overflow in the SparkPlan.executeTake, RDD.take and AsyncRDDActions.takeAsync
I have closed pull request https://github.com/apache/spark/pull/10487. And I create this pull request to resolve the problem.

spark jira
https://issues.apache.org/jira/browse/SPARK-12340

Author: QiangCai <david.caiq@gmail.com>

Closes #10562 from QiangCai/bugfix.
2016-01-06 18:13:07 +09:00
Marcelo Vanzin b3ba1be3b7 [SPARK-3873][TESTS] Import ordering fixes.
Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #10582 from vanzin/SPARK-3873-tests.
2016-01-05 19:07:39 -08:00
Marcelo Vanzin 7a375bb87a [SPARK-3873][CORE] Import ordering fixes.
Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #10578 from vanzin/SPARK-3873-core.
2016-01-05 19:02:25 -08:00
Davies Liu 70fe6ce52f [SPARK-12659] fix NPE in UnsafeExternalSorter (used by cartesian product)
Cartesian product use UnsafeExternalSorter without comparator to do spilling, it will NPE if spilling happens.

This bug also hitted by #10605

cc JoshRosen

Author: Davies Liu <davies@databricks.com>

Closes #10606 from davies/fix_spilling.
2016-01-05 18:46:52 -08:00
Reynold Xin 8ce645d4ee [SPARK-12615] Remove some deprecated APIs in RDD/SparkContext
I looked at each case individually and it looks like they can all be removed. The only one that I had to think twice was toArray (I even thought about un-deprecating it, until I realized it was a problem in Java to have toArray returning java.util.List).

Author: Reynold Xin <rxin@databricks.com>

Closes #10569 from rxin/SPARK-12615.
2016-01-05 11:10:14 -08:00
Kousuke Saruta 8eb2dc7133 [SPARK-12641] Remove unused code related to Hadoop 0.23
Currently we don't support Hadoop 0.23 but there is a few code related to it so let's clean it up.

Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp>

Closes #10590 from sarutak/SPARK-12641.
2016-01-05 00:39:50 -08:00
Nong Li 8f659393b2 [SPARK-12486] Worker should kill the executors more forcefully if possible.
This patch updates the ExecutorRunner's terminate path to use the new java 8 API
to terminate processes more forcefully if possible. If the executor is unhealthy,
it would previously ignore the destroy() call. Presumably, the new java API was
added to handle cases like this.

We could update the termination path in the future to use OS specific commands
for older java versions.

Author: Nong Li <nong@databricks.com>

Closes #10438 from nongli/spark-12486-executors.
2016-01-04 10:37:56 -08:00
Sean Owen 15bd73627e [SPARK-12481][CORE][STREAMING][SQL] Remove usage of Hadoop deprecated APIs and reflection that supported 1.x
Remove use of deprecated Hadoop APIs now that 2.2+ is required

Author: Sean Owen <sowen@cloudera.com>

Closes #10446 from srowen/SPARK-12481.
2016-01-02 13:15:53 +00:00
Shixiong Zhu 4f5a24d7e7 [SPARK-7995][SPARK-6280][CORE] Remove AkkaRpcEnv and remove systemName from setupEndpointRef
### Remove AkkaRpcEnv

Keep `SparkEnv.actorSystem` because Streaming still uses it. Will remove it and AkkaUtils after refactoring Streaming actorStream API.

### Remove systemName
There are 2 places using `systemName`:
* `RpcEnvConfig.name`. Actually, although it's used as `systemName` in `AkkaRpcEnv`, `NettyRpcEnv` uses it as the service name to output the log `Successfully started service *** on port ***`. Since the service name in log is useful, I keep `RpcEnvConfig.name`.
* `def setupEndpointRef(systemName: String, address: RpcAddress, endpointName: String)`. Each `ActorSystem` has a `systemName`. Akka requires `systemName` in its URI and will refuse a connection if `systemName` is not matched. However, `NettyRpcEnv` doesn't use it. So we can remove `systemName` from `setupEndpointRef` since we are removing `AkkaRpcEnv`.

### Remove RpcEnv.uriOf

`uriOf` exists because Akka uses different URI formats for with and without authentication, e.g., `akka.ssl.tcp...` and `akka.tcp://...`. But `NettyRpcEnv` uses the same format. So it's not necessary after removing `AkkaRpcEnv`.

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #10459 from zsxwing/remove-akka-rpc-env.
2015-12-31 00:15:55 -08:00
Reynold Xin be33a0cd3d [SPARK-12561] Remove JobLogger in Spark 2.0.
It was research code and has been deprecated since 1.0.0. No one really uses it since they can just use event logging.

Author: Reynold Xin <rxin@databricks.com>

Closes #10530 from rxin/SPARK-12561.
2015-12-30 18:28:08 -08:00
Reynold Xin ee8f8d3184 [SPARK-12588] Remove HttpBroadcast in Spark 2.0.
We switched to TorrentBroadcast in Spark 1.1, and HttpBroadcast has been undocumented since then. It's time to remove it in Spark 2.0.

Author: Reynold Xin <rxin@databricks.com>

Closes #10531 from rxin/SPARK-12588.
2015-12-30 18:07:07 -08:00
Carson Wang b244297966 [SPARK-12399] Display correct error message when accessing REST API with an unknown app Id
I got an exception when accessing the below REST API with an unknown application Id.
`http://<server-url>:18080/api/v1/applications/xxx/jobs`
Instead of an exception, I expect an error message "no such app: xxx" which is a similar error message when I access `/api/v1/applications/xxx`
```
org.spark-project.guava.util.concurrent.UncheckedExecutionException: java.util.NoSuchElementException: no app with key xxx
	at org.spark-project.guava.cache.LocalCache$Segment.get(LocalCache.java:2263)
	at org.spark-project.guava.cache.LocalCache.get(LocalCache.java:4000)
	at org.spark-project.guava.cache.LocalCache.getOrLoad(LocalCache.java:4004)
	at org.spark-project.guava.cache.LocalCache$LocalLoadingCache.get(LocalCache.java:4874)
	at org.apache.spark.deploy.history.HistoryServer.getSparkUI(HistoryServer.scala:116)
	at org.apache.spark.status.api.v1.UIRoot$class.withSparkUI(ApiRootResource.scala:226)
	at org.apache.spark.deploy.history.HistoryServer.withSparkUI(HistoryServer.scala:46)
	at org.apache.spark.status.api.v1.ApiRootResource.getJobs(ApiRootResource.scala:66)
```

Author: Carson Wang <carson.wang@intel.com>

Closes #10352 from carsonwang/unknownAppFix.
2015-12-30 13:49:10 -08:00
Neelesh Srinivas Salian 932cf44248 [SPARK-12263][DOCS] IllegalStateException: Memory can't be 0 for SPARK_WORKER_MEMORY without unit
Updated the Worker Unit IllegalStateException message to indicate no values less than 1MB instead of 0 to help solve this.
Requesting review

Author: Neelesh Srinivas Salian <nsalian@cloudera.com>

Closes #10483 from nssalian/SPARK-12263.
2015-12-30 11:14:13 +00:00
Shixiong Zhu 7ab0e2289d [SPARK-12490][CORE] Limit the css style scope to fix the Streaming UI
#10441 broke the Streaming UI because of the new CSS style.

<img width="503" alt="screen shot 2015-12-29 at 4 49 04 pm" src="https://cloud.githubusercontent.com/assets/1000778/12044763/1efce0fe-ae4c-11e5-9f8b-39df08426bf8.png">

This PR just added a class for the new style and only applied them to the paged tables.

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #10517 from zsxwing/fix-streaming-ui.
2015-12-29 19:54:10 -08:00
Josh Rosen 124a3a5e4e [SPARK-12490] Don't use Javascript for web UI's paginated table controls
The web UI's paginated table uses Javascript to implement certain navigation controls, such as table sorting and the "go to page" form. This is unnecessary and should be simplified to use plain HTML form controls and links.

/cc zsxwing, who wrote this original code, and yhuai.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #10441 from JoshRosen/simplify-paginated-table-sorting.
2015-12-28 16:42:11 -08:00
Shixiong Zhu 710b411729 [SPARK-12489][CORE][SQL][MLIB] Fix minor issues found by FindBugs
Include the following changes:

1. Close `java.sql.Statement`
2. Fix incorrect `asInstanceOf`.
3. Remove unnecessary `synchronized` and `ReentrantLock`.

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #10440 from zsxwing/findbugs.
2015-12-28 15:01:51 -08:00
Daoyuan Wang a6d385322e [SPARK-12222][CORE] Deserialize RoaringBitmap using Kryo serializer throw Buffer underflow exception
Since we only need to implement `def skipBytes(n: Int)`,
code in #10213 could be simplified.
davies scwf

Author: Daoyuan Wang <daoyuan.wang@intel.com>

Closes #10253 from adrian-wang/kryo.
2015-12-29 07:02:30 +09:00
Yaron Weinsberg 73b70f076d [SPARK-12517] add default RDD name for one created via sc.textFile
The feature was first added at commit: 7b877b2705 but was later removed (probably by mistake) at commit: fc8b58195a.
This change sets the default path of RDDs created via sc.textFile(...) to the path argument.

Here is the symptom:

* Using spark-1.5.2-bin-hadoop2.6:

scala> sc.textFile("/home/root/.bashrc").name
res5: String = null

scala> sc.binaryFiles("/home/root/.bashrc").name
res6: String = /home/root/.bashrc

* while using Spark 1.3.1:

scala> sc.textFile("/home/root/.bashrc").name
res0: String = /home/root/.bashrc

scala> sc.binaryFiles("/home/root/.bashrc").name
res1: String = /home/root/.bashrc

Author: Yaron Weinsberg <wyaron@gmail.com>
Author: yaron <yaron@il.ibm.com>

Closes #10456 from wyaron/master.
2015-12-29 05:19:11 +09:00
echo2mei 1e97813951 [SPARK-12396][CORE] Modify the function scheduleAtFixedRate to schedule.
Instead of just cancel the registrationRetryTimer to avoid driver retry connect to master, change the function to schedule.
It is no need to register to master iteratively.

Author: echo2mei <534384876@qq.com>

Closes #10447 from echoTomei/master.
2015-12-25 17:42:24 -08:00
pierre-borckmans ea4aab7e87 [SPARK-12440][CORE] Avoid setCheckpoint warning when directory is not local
In SparkContext method `setCheckpointDir`, a warning is issued when spark master is not local and the passed directory for the checkpoint dir appears to be local.

In practice, when relying on HDFS configuration file and using a relative path for the checkpoint directory (using an incomplete URI without HDFS scheme, ...), this warning should not be issued and might be confusing.
In fact, in this case, the checkpoint directory is successfully created, and the checkpointing mechanism works as expected.

This PR uses the `FileSystem` instance created with the given directory, and checks whether it is local or not.
(The rationale is that since this same `FileSystem` instance is used to create the checkpoint dir anyway and can therefore be reliably used to determine if it is local or not).

The warning is only issued if the directory is not local, on top of the existing conditions.

Author: pierre-borckmans <pierre.borckmans@realimpactanalytics.com>

Closes #10392 from pierre-borckmans/SPARK-12440_CheckpointDir_Warning_NonLocal.
2015-12-24 13:48:21 +00:00
Kazuaki Ishizaki 3920466118 [SPARK-12311][CORE] Restore previous value of "os.arch" property in test suites after forcing to set specific value to "os.arch" property
Restore the original value of os.arch property after each test

Since some of tests forced to set the specific value to os.arch property, we need to set the original value.

Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com>

Closes #10289 from kiszk/SPARK-12311.
2015-12-24 13:37:28 +00:00
Sean Owen ae1f54aa0e [SPARK-12500][CORE] Fix Tachyon deprecations; pull Tachyon dependency into one class
Fix Tachyon deprecations; pull Tachyon dependency into `TachyonBlockManager` only

CC calvinjia as I probably need a double-check that the usage of the new API is correct.

Author: Sean Owen <sowen@cloudera.com>

Closes #10449 from srowen/SPARK-12500.
2015-12-23 13:24:06 -08:00
Nong Li 575a132797 [SPARK-12471][CORE] Spark daemons will log their pid on start up.
Author: Nong Li <nong@databricks.com>

Closes #10422 from nongli/12471-pids.
2015-12-22 13:27:28 -08:00
Jacek Laskowski 7c970f9093 Minor corrections, i.e. typo fixes and follow deprecated
Author: Jacek Laskowski <jacek@japila.pl>

Closes #10432 from jaceklaskowski/minor-corrections.
2015-12-22 10:47:10 -08:00
Reynold Xin 0a38637d05 [SPARK-11807] Remove support for Hadoop < 2.2
i.e. Hadoop 1 and Hadoop 2.0

Author: Reynold Xin <rxin@databricks.com>

Closes #10404 from rxin/SPARK-11807.
2015-12-21 22:15:52 -08:00
Davies Liu 29cecd4a42 [SPARK-12388] change default compression to lz4
According the benchmark [1], LZ4-java could be 80% (or 30%) faster than Snappy.

After changing the compressor to LZ4, I saw 20% improvement on end-to-end time for a TPCDS query (Q4).

[1] https://github.com/ning/jvm-compressor-benchmark/wiki

cc rxin

Author: Davies Liu <davies@databricks.com>

Closes #10342 from davies/lz4.
2015-12-21 14:21:43 -08:00
Andrew Or d655d37ddf [SPARK-12466] Fix harmless NPE in tests
```
[info] ReplayListenerSuite:
[info] - Simple replay (58 milliseconds)
java.lang.NullPointerException
	at org.apache.spark.deploy.master.Master$$anonfun$asyncRebuildSparkUI$1.applyOrElse(Master.scala:982)
	at org.apache.spark.deploy.master.Master$$anonfun$asyncRebuildSparkUI$1.applyOrElse(Master.scala:980)
```
https://amplab.cs.berkeley.edu/jenkins/view/Spark-QA-Test/job/Spark-Master-SBT/4316/AMPLAB_JENKINS_BUILD_PROFILE=hadoop2.2,label=spark-test/consoleFull

This was introduced in #10284. It's harmless because the NPE is caused by a race that occurs mainly in `local-cluster` tests (but don't actually fail the tests).

Tested locally to verify that the NPE is gone.

Author: Andrew Or <andrew@databricks.com>

Closes #10417 from andrewor14/fix-harmless-npe.
2015-12-21 14:09:04 -08:00
Reynold Xin a820ca19de [SPARK-2331] SparkContext.emptyRDD should return RDD[T] not EmptyRDD[T]
Author: Reynold Xin <rxin@databricks.com>

Closes #10394 from rxin/SPARK-2331.
2015-12-21 14:07:48 -08:00
Takeshi YAMAMURO 935f466306 [SPARK-12392][CORE] Optimize a location order of broadcast blocks by considering preferred local hosts
When multiple workers exist in a host, we can bypass unnecessary remote access for broadcasts; block managers fetch broadcast blocks from the same host instead of remote hosts.

Author: Takeshi YAMAMURO <linguin.m.s@gmail.com>

Closes #10346 from maropu/OptimizeBlockLocationOrder.
2015-12-21 14:03:23 -08:00
gatorsmile 4883a5087d [SPARK-12374][SPARK-12150][SQL] Adding logical/physical operators for Range
Based on the suggestions from marmbrus , added logical/physical operators for Range for improving the performance.

Also added another API for resolving the JIRA Spark-12150.

Could you take a look at my implementation, marmbrus ? If not good, I can rework it. : )

Thank you very much!

Author: gatorsmile <gatorsmile@gmail.com>

Closes #10335 from gatorsmile/rangeOperators.
2015-12-21 13:46:58 -08:00
Reynold Xin 284e29a870 [SPARK-11808] Remove Bagel.
Author: Reynold Xin <rxin@databricks.com>

Closes #10395 from rxin/SPARK-11808.
2015-12-19 22:40:35 -08:00
Reynold Xin f496031bd2 Bump master version to 2.0.0-SNAPSHOT.
Author: Reynold Xin <rxin@databricks.com>

Closes #10387 from rxin/version-bump.
2015-12-19 15:13:05 -08:00
Andrew Or a78a91f4d7 Revert "[SPARK-12345][MESOS] Filter SPARK_HOME when submitting Spark jobs with Mesos cluster mode."
This reverts commit ad8c1f0b84.
2015-12-18 16:22:51 -08:00
Andrew Or 8a9417bc4b Revert "[SPARK-12345][MESOS] Properly filter out SPARK_HOME in the Mesos REST server"
This reverts commit 8184568810.
2015-12-18 16:22:41 -08:00
Andrew Or 14be5dece2 Revert "[SPARK-12413] Fix Mesos ZK persistence"
This reverts commit 2bebaa39d9.
2015-12-18 16:22:33 -08:00
Luc Bourlier ba9332edd8 [SPARK-12345][CORE] Do not send SPARK_HOME through Spark submit REST interface
It is usually an invalid location on the remote machine executing the job.
It is picked up by the Mesos support in cluster mode, and most of the time causes
the job to fail.

Fixes SPARK-12345

Author: Luc Bourlier <luc.bourlier@typesafe.com>

Closes #10329 from skyluc/issue/SPARK_HOME.
2015-12-18 16:21:01 -08:00
Shixiong Zhu 007a32f90a [SPARK-11097][CORE] Add channelActive callback to RpcHandler to monitor the new connections
Added `channelActive` to `RpcHandler` so that `NettyRpcHandler` doesn't need `clients` any more.

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #10301 from zsxwing/network-events.
2015-12-18 16:06:37 -08:00
Nong Li 0514e8d4b6 [SPARK-12411][CORE] Decrease executor heartbeat timeout to match heartbeat interval
Previously, the rpc timeout was the default network timeout, which is the same value
the driver uses to determine dead executors. This means if there is a network issue,
the executor is determined dead after one heartbeat attempt. There is a separate config
for the heartbeat interval which is a better value to use for the heartbeat RPC. With
this change, the executor will make multiple heartbeat attempts even with RPC issues.

Author: Nong Li <nong@databricks.com>

Closes #10365 from nongli/spark-12411.
2015-12-18 16:05:18 -08:00
Grace 60da0e11f6 [SPARK-9552] Return "false" while nothing to kill in killExecutors
In discussion (SPARK-9552), we proposed a force kill in `killExecutors`. But if there is nothing to kill, it will return back with true (acknowledgement). And then, it causes the certain executor(s) (which is not eligible to kill) adding to pendingToRemove list for further actions.

In this patch, we'd like to change the return semantics. If there is nothing to kill, we will return "false". and therefore  all those non-eligible executors won't be added to the pendingToRemove list.

vanzin andrewor14 As the follow up of PR#7888, please let me know your comments.

Author: Grace <jie.huang@intel.com>
Author: Jie Huang <hjie@fosun.com>
Author: Andrew Or <andrew@databricks.com>

Closes #9796 from GraceH/emptyPendingToRemove.
2015-12-18 16:04:42 -08:00
Marcelo Vanzin 2782818287 [SPARK-12350][CORE] Don't log errors when requested stream is not found.
If a client requests a non-existent stream, just send a failure message
back, without logging any error on the server side (since it's not a
server error).

On the executor side, avoid error logs by translating any errors during
transfer to a `ClassNotFoundException`, so that loading the class is
retried on a the parent class loader. This can mask IO errors during
transmission, but the most common cause is that the class is not
served by the remote end.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #10337 from vanzin/SPARK-12350.
2015-12-18 09:49:08 -08:00
Michael Gummelt 2bebaa39d9 [SPARK-12413] Fix Mesos ZK persistence
I believe this fixes SPARK-12413.  I'm currently running an integration test to verify.

Author: Michael Gummelt <mgummelt@mesosphere.io>

Closes #10366 from mgummelt/fix-zk-mesos.
2015-12-18 20:18:00 +09:00
Jeff Zhang 40e52a27c7 [CORE][TESTS] minor fix of JavaSerializerSuite
Not jira is created.
The original test is passed because the class cast is lazy (only when the object's method is invoked).

Author: Jeff Zhang <zjffdu@apache.org>

Closes #10371 from zjffdu/minor_fix.
2015-12-18 00:49:56 -08:00
Iulian Dragos 8184568810 [SPARK-12345][MESOS] Properly filter out SPARK_HOME in the Mesos REST server
Fix problem with #10332, this one should fix Cluster mode on Mesos

Author: Iulian Dragos <jaguarul@gmail.com>

Closes #10359 from dragos/issue/fix-spark-12345-one-more-time.
2015-12-18 03:19:31 +09:00
Shixiong Zhu 86e405f357 [SPARK-12220][CORE] Make Utils.fetchFile support files that contain special characters
This PR encodes and decodes the file name to fix the issue.

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #10208 from zsxwing/uri.
2015-12-17 09:55:37 -08:00
Davies Liu cd3d937b0c Revert "Once driver register successfully, stop it to connect to master."
This reverts commit 5a514b61bb.
2015-12-17 08:01:27 -08:00
echo2mei 5a514b61bb Once driver register successfully, stop it to connect to master.
This commit is to resolve SPARK-12396.

Author: echo2mei <534384876@qq.com>

Closes #10354 from echoTomei/master.
2015-12-17 07:59:17 -08:00