### What changes were proposed in this pull request?
This PR proposes to ask users if they want to download and install SparkR when they install SparkR from CRAN.
`SPARKR_ASK_INSTALLATION` environment variable was added in case other notebook projects are affected.
### Why are the changes needed?
This is required for CRAN. Currently SparkR is removed: https://cran.r-project.org/web/packages/SparkR/index.html.
See also https://lists.apache.org/thread.html/r02b9046273a518e347dfe85f864d23d63d3502c6c1edd33df17a3b86%40%3Cdev.spark.apache.org%3E
### Does this PR introduce _any_ user-facing change?
Yes, `sparkR.session(...)` will ask if users want to download and install Spark package or not if they are in the plain R shell or `Rscript`.
### How was this patch tested?
**R shell**
Valid input (`n`):
```
> sparkR.session(master="local")
Spark not found in SPARK_HOME:
Will you download and install (or reuse if it exists) Spark package under the cache [/.../Caches/spark]? (y/n): n
```
```
Error in sparkCheckInstall(sparkHome, master, deployMode) :
Please make sure Spark package is installed in this machine.
- If there is one, set the path in sparkHome parameter or environment variable SPARK_HOME.
- If not, you may run install.spark function to do the job.
```
Invalid input:
```
> sparkR.session(master="local")
Spark not found in SPARK_HOME:
Will you download and install (or reuse if it exists) Spark package under the cache [/.../Caches/spark]? (y/n): abc
```
```
Will you download and install (or reuse if it exists) Spark package under the cache [/.../Caches/spark]? (y/n):
```
Valid input (`y`):
```
> sparkR.session(master="local")
Will you download and install (or reuse if it exists) Spark package under the cache [/.../Caches/spark]? (y/n): y
Spark not found in the cache directory. Installation will start.
MirrorUrl not provided.
Looking for preferred site from apache website...
Preferred mirror site found: https://ftp.riken.jp/net/apache/spark
Downloading spark-3.3.0 for Hadoop 2.7 from:
- https://ftp.riken.jp/net/apache/spark/spark-3.3.0/spark-3.3.0-bin-hadoop2.7.tgz
trying URL 'https://ftp.riken.jp/net/apache/spark/spark-3.3.0/spark-3.3.0-bin-hadoop2.7.tgz'
...
```
**Rscript**
```
cat tmp.R
```
```
library(SparkR, lib.loc = c(file.path(".", "R", "lib")))
sparkR.session(master="local")
```
```
Rscript tmp.R
```
Valid input (`n`):
```
Spark not found in SPARK_HOME:
Will you download and install (or reuse if it exists) Spark package under the cache [/.../Caches/spark]? (y/n): n
```
```
Error in sparkCheckInstall(sparkHome, master, deployMode) :
Please make sure Spark package is installed in this machine.
- If there is one, set the path in sparkHome parameter or environment variable SPARK_HOME.
- If not, you may run install.spark function to do the job.
Calls: sparkR.session -> sparkCheckInstall
```
Invalid input:
```
Spark not found in SPARK_HOME:
Will you download and install (or reuse if it exists) Spark package under the cache [/.../Caches/spark]? (y/n): abc
```
```
Will you download and install (or reuse if it exists) Spark package under the cache [/.../Caches/spark]? (y/n):
```
Valid input (`y`):
```
...
Spark not found in SPARK_HOME:
Will you download and install (or reuse if it exists) Spark package under the cache [/.../Caches/spark]? (y/n): y
Spark not found in the cache directory. Installation will start.
MirrorUrl not provided.
Looking for preferred site from apache website...
Preferred mirror site found: https://ftp.riken.jp/net/apache/spark
Downloading spark-3.3.0 for Hadoop 2.7 from:
...
```
`bin/sparkR` and `bin/spark-submit *.R` are not affected (tested).
Closes#33887 from HyukjinKwon/SPARK-36631.
Authored-by: Hyukjin Kwon <gurwls223@apache.org>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
(cherry picked from commit e983ba8fce)
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Added missing documentation of week and quarter as valid formats to pyspark sql/functions trunc
### Why are the changes needed?
Pyspark documentation and scala documentation didn't mentioned the same supported formats
### Does this PR introduce _any_ user-facing change?
No
### How was this patch tested?
Only documentation change
Closes#33359 from dominikgehl/feature/SPARK-36154.
Authored-by: Dominik Gehl <dog@open.ch>
Signed-off-by: Max Gekk <max.gekk@gmail.com>
(cherry picked from commit 802f632a28)
Signed-off-by: Max Gekk <max.gekk@gmail.com>
### What changes were proposed in this pull request?
By default, AQE will set `COALESCE_PARTITIONS_MIN_PARTITION_NUM` to the spark default parallelism, which is usually quite big. This is to keep the parallelism on par with non-AQE, to avoid perf regressions.
However, this usually leads to many small/empty partitions, and hurts performance (although not worse than non-AQE). Users usually blindly set `COALESCE_PARTITIONS_MIN_PARTITION_NUM` to 1, which makes this config quite useless.
This PR adds a new config to set the min partition size, to avoid too small partitions after coalescing. By default, Spark will not respect the target size, and only respect this min partition size, to maximize the parallelism and avoid perf regression in AQE. This PR also adds a bool config to respect the target size when coalescing partitions, and it's recommended to set it to get better overall performance. This PR also deprecates the `COALESCE_PARTITIONS_MIN_PARTITION_NUM` config.
### Why are the changes needed?
AQE is default on now, we should make the perf better in the default case.
### Does this PR introduce _any_ user-facing change?
yes, a new config.
### How was this patch tested?
new tests
Closes#33172 from cloud-fan/aqe2.
Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
(cherry picked from commit 0c9c8ff569)
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
### What changes were proposed in this pull request?
This PR proposes to support R 4.1.0+ in SparkR. Currently the tests are being failed as below:
```
══ Failed ══════════════════════════════════════════════════════════════════════
── 1. Failure (test_sparkSQL_arrow.R:71:3): createDataFrame/collect Arrow optimi
collect(createDataFrame(rdf)) not equal to `expected`.
Component “g”: 'tzone' attributes are inconsistent ('UTC' and '')
── 2. Failure (test_sparkSQL_arrow.R:143:3): dapply() Arrow optimization - type
collect(ret) not equal to `rdf`.
Component “b”: 'tzone' attributes are inconsistent ('UTC' and '')
── 3. Failure (test_sparkSQL_arrow.R:229:3): gapply() Arrow optimization - type
collect(ret) not equal to `rdf`.
Component “b”: 'tzone' attributes are inconsistent ('UTC' and '')
── 4. Error (test_sparkSQL.R:1454:3): column functions ─────────────────────────
Error: (converted from warning) cannot xtfrm data frames
Backtrace:
1. base::sort(collect(distinct(select(df, input_file_name())))) test_sparkSQL.R:1454:2
2. base::sort.default(collect(distinct(select(df, input_file_name()))))
5. base::order(x, na.last = na.last, decreasing = decreasing)
6. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
7. base:::FUN(X[[i]], ...)
10. base::xtfrm.data.frame(x)
── 5. Failure (test_utils.R:67:3): cleanClosure on R functions ─────────────────
`actual` not equal to `g`.
names for current but not for target
Length mismatch: comparison on first 0 components
── 6. Failure (test_utils.R:80:3): cleanClosure on R functions ─────────────────
`actual` not equal to `g`.
names for current but not for target
Length mismatch: comparison on first 0 components
```
It fixes three as below:
- Avoid a sort on DataFrame which isn't legitimate: https://github.com/apache/spark/pull/32709#discussion_r642458108
- Treat the empty timezone and local timezone as equivalent in SparkR: https://github.com/apache/spark/pull/32709#discussion_r642464454
- Disable `check.environment` in the cleaned closure comparison (enabled by default from R 4.1+, https://cran.r-project.org/doc/manuals/r-release/NEWS.html), and keep the test as is https://github.com/apache/spark/pull/32709#discussion_r642510089
### Why are the changes needed?
Higher R versions have bug fixes and improvements. More importantly R users tend to use highest R versions.
### Does this PR introduce _any_ user-facing change?
Yes, SparkR will work together with R 4.1.0+
### How was this patch tested?
```bash
./R/run-tests.sh
```
```
sparkSQL_arrow:
SparkSQL Arrow optimization: .................
...
sparkSQL:
SparkSQL functions: ........................................................................................................................................................................................................
........................................................................................................................................................................................................
........................................................................................................................................................................................................
........................................................................................................................................................................................................
........................................................................................................................................................................................................
........................................................................................................................................................................................................
...
utils:
functions in utils.R: ..............................................
```
Closes#32709 from HyukjinKwon/SPARK-35573.
Authored-by: Hyukjin Kwon <gurwls223@apache.org>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
As discussed, update SparkR maintainer for future release.
### Why are the changes needed?
Shivaram will not be able to work with this in the future, so we would like to migrate off the maintainer contact email.
shivaram
Closes#32642 from felixcheung/sparkr-maintainer.
Authored-by: Felix Cheung <felixcheung@users.noreply.github.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR fixes the same issue as https://github.com/apache/spark/pull/32424
```r
df <- sql("SELECT array(1, 2, 3) as numbers, array('a', 'b', 'c') as letters")
collect(select(
df,
array_transform("numbers", function(number) {
array_transform("letters", function(latter) {
struct(alias(number, "n"), alias(latter, "l"))
})
})
))
```
**Before:**
```
... a, a, b, b, c, c, a, a, b, b, c, c, a, a, b, b, c, c
```
**After:**
```
... 1, a, 1, b, 1, c, 2, a, 2, b, 2, c, 3, a, 3, b, 3, c
```
### Why are the changes needed?
To produce the correct results.
### Does this PR introduce _any_ user-facing change?
Yes, it fixes the results to be correct as mentioned above.
### How was this patch tested?
Manually tested as above, and unit test was added.
Closes#32517 from HyukjinKwon/SPARK-35381.
Authored-by: Hyukjin Kwon <gurwls223@apache.org>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
1, remove existing agg, and use a new agg supporting virtual centering
2, add related testsuites
### Why are the changes needed?
centering vectors should accelerate convergence, and generate solution more close to R
### Does this PR introduce _any_ user-facing change?
No
### How was this patch tested?
updated testsuites and added testsuites
Closes#32124 from zhengruifeng/svc_agg_refactor.
Authored-by: Ruifeng Zheng <ruifengz@foxmail.com>
Signed-off-by: Ruifeng Zheng <ruifengz@foxmail.com>
### What changes were proposed in this pull request?
This PR proposes a change that allows us to build SparkR with SBT.
### Why are the changes needed?
In the current master, SparkR can be built only with Maven.
It's helpful if we can built it with SBT.
### Does this PR introduce _any_ user-facing change?
No.
### How was this patch tested?
I confirmed that I can build SparkR on Ubuntu 20.04 with the following command.
```
build/sbt -Psparkr package
```
Closes#32285 from sarutak/sbt-sparkr.
Authored-by: Kousuke Saruta <sarutak@oss.nttdata.com>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Declare the markdown package as a dependency of the SparkR package
### Why are the changes needed?
If we didn't install pandoc locally, running make-distribution.sh will fail with the following message:
```
— re-building ‘sparkr-vignettes.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Error: processing vignette 'sparkr-vignettes.Rmd' failed with diagnostics:
The 'markdown' package should be declared as a dependency of the 'SparkR' package (e.g., in the 'Suggests' field of DESCRIPTION), because the latter contains vignette(s) built with the 'markdown' package. Please see https://github.com/yihui/knitr/issues/1864 for more information.
— failed re-building ‘sparkr-vignettes.Rmd’
```
### Does this PR introduce _any_ user-facing change?
Yes. Workaround for R packaging.
### How was this patch tested?
Manually test. After the fix, the command `sh dev/make-distribution.sh -Psparkr -Phadoop-2.7 -Phive -Phive-thriftserver -Pyarn` in the environment without pandoc will pass.
Closes#32270 from xuanyuanking/SPARK-35171.
Authored-by: Yuanjian Li <yuanjian.li@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This PR fixes the URL links to use CRAN URL in canonical form.
CRAN package submission was failed as below:
```
Found the following (possibly) invalid URLs:
URL: https://cran.r-project.org/web/packages/e1071/index.html
From: man/spark.naiveBayes.Rd
Status: 200
Message: OK
CRAN URL not in canonical form
URL: https://cran.r-project.org/web/packages/mixtools/index.html
From: man/spark.gaussianMixture.Rd
Status: 200
Message: OK
CRAN URL not in canonical form
URL: https://cran.r-project.org/web/packages/survival/index.html
From: man/spark.survreg.Rd
Status: 200
Message: OK
CRAN URL not in canonical form
URL: https://cran.r-project.org/web/packages/topicmodels/index.html
From: man/spark.lda.Rd
Status: 200
Message: OK
CRAN URL not in canonical form
The canonical URL of the CRAN page for a package is
https://CRAN.R-project.org/package=pkgname
```
### Why are the changes needed?
To fix CRAN package submission
### Does this PR introduce _any_ user-facing change?
It exposes a canoncal form of URLs to end users.
### How was this patch tested?
I manually clicked each links.
Closes#31759 from HyukjinKwon/minor-doc-fixes.
Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### Why is this change being proposed?
This patch adds support for a new "product" aggregation function in `sql.functions` which multiplies-together all values in an aggregation group.
This is likely to be useful in statistical applications which involve combining probabilities, or financial applications that involve combining cumulative interest rates, but is also a versatile mathematical operation of similar status to `sum` or `stddev`. Other users [have noted](https://stackoverflow.com/questions/52991640/cumulative-product-in-spark) the absence of such a function in current releases of Spark.
This function is both much more concise than an expression of the form `exp(sum(log(...)))`, and avoids awkward edge-cases associated with some values being zero or negative, as well as being less computationally costly.
### Does this PR introduce _any_ user-facing change?
No - only adds new function.
### How was this patch tested?
Built-in tests have been added for the new `catalyst.expressions.aggregate.Product` class and its invocation via the (scala) `sql.functions.product` function. The latter, and the PySpark wrapper have also been manually tested in spark-shell and pyspark sessions. The SparkR wrapper is currently untested, and may need separate validation (I'm not an "R" user myself).
An illustration of the new functionality, within PySpark is as follows:
```
import pyspark.sql.functions as pf, pyspark.sql.window as pw
df = sqlContext.range(1, 17).toDF("x")
win = pw.Window.partitionBy(pf.lit(1)).orderBy(pf.col("x"))
df.withColumn("factorial", pf.product("x").over(win)).show(20, False)
+---+---------------+
|x |factorial |
+---+---------------+
|1 |1.0 |
|2 |2.0 |
|3 |6.0 |
|4 |24.0 |
|5 |120.0 |
|6 |720.0 |
|7 |5040.0 |
|8 |40320.0 |
|9 |362880.0 |
|10 |3628800.0 |
|11 |3.99168E7 |
|12 |4.790016E8 |
|13 |6.2270208E9 |
|14 |8.71782912E10 |
|15 |1.307674368E12 |
|16 |2.0922789888E13|
+---+---------------+
```
Closes#30745 from rwpenney/feature/agg-product.
Lead-authored-by: Richard Penney <rwp@rwpenney.uk>
Co-authored-by: Richard Penney <rwpenney@users.noreply.github.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This PR completes snake_case rule at functions APIs across the languages, see also SPARK-10621.
In more details, this PR:
- Adds `count_distinct` in Scala Python, and R, and document that `count_distinct` is encouraged. This was not deprecated because `countDistinct` is pretty commonly used. We could deprecate in the future releases.
- (Scala-specific) adds `typedlit` but doesn't deprecate `typedLit` which is arguably commonly used. Likewise, we could deprecate in the future releases.
- Deprecates and renames:
- `sumDistinct` -> `sum_distinct`
- `bitwiseNOT` -> `bitwise_not`
- `shiftLeft` -> `shiftleft` (matched with SQL name in `FunctionRegistry`)
- `shiftRight` -> `shiftright` (matched with SQL name in `FunctionRegistry`)
- `shiftRightUnsigned` -> `shiftrightunsigned` (matched with SQL name in `FunctionRegistry`)
- (Scala-specific) `callUDF` -> `call_udf`
### Why are the changes needed?
To keep the consistent naming in APIs.
### Does this PR introduce _any_ user-facing change?
Yes, it deprecates some APIs and add new renamed APIs as described above.
### How was this patch tested?
Unittests were added.
Closes#31408 from HyukjinKwon/SPARK-34306.
Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Replace v1 exec node `AlterTableRecoverPartitionsCommand` by the logical node `AlterTableRecoverPartitions` in `CatalogImpl.recoverPartitions()`.
### Why are the changes needed?
1. Print user friendly error message for views:
```
my_temp_table is a temp view. 'recoverPartitions()' expects a table
```
Before the changes:
```
Table or view 'my_temp_table' not found in database 'default'
```
2. To not bind to v1 `ALTER TABLE .. RECOVER PARTITIONS`, and to support v2 tables potentially as well.
### Does this PR introduce _any_ user-facing change?
Yes, it can.
### How was this patch tested?
By running new test in `CatalogSuite`:
```
$ build/sbt -Phive -Phive-thriftserver "test:testOnly org.apache.spark.sql.internal.CatalogSuite"
```
Closes#31403 from MaxGekk/catalogimpl-recoverPartitions.
Authored-by: Max Gekk <max.gekk@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
### What changes were proposed in this pull request?
This PR is a followup of #27433. It fixes the naming to match with Scala side, and this is similar with https://github.com/apache/spark/pull/31062.
Note that:
- there are a bit of inconsistency already e.g.) `x`, `y` in SparkR and they are documented together for doc deduplication. This part I did not change but the name `zero` vs `initialValue` looks unnecessary.
- such naming matching seems already pretty common in SparkR.
### Why are the changes needed?
To make the usage similar with Scala side, and for consistency.
### Does this PR introduce _any_ user-facing change?
No, this is not released yet.
### How was this patch tested?
GitHub Actions and Jenkins build will test it out.
Also, I manually tested:
```r
> df <- select(createDataFrame(data.frame(id = 1)),expr("CAST(array(1.0, 2.0, -3.0, -4.0) AS array<double>) xs"))
> collect(select(df, array_aggregate("xs", initialValue = lit(0.0), merge = function(x, y) otherwise(when(x > y, x), y))))
aggregate(xs, 0.0, lambdafunction(CASE WHEN (x > y) THEN x ELSE y END, x, y), lambdafunction(id, id))
1 2
```
Closes#31226 from HyukjinKwon/SPARK-30682.
Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
3.0.1 CRAN submission was failed as the reason below:
```
Found the following (possibly) invalid URLs:
URL: http://jsonlines.org/ (moved to https://jsonlines.org/)
From: man/read.json.Rd
man/write.json.Rd
Status: 200
Message: OK
URL: https://dl.acm.org/citation.cfm?id=1608614 (moved to
https://dl.acm.org/doi/10.1109/MC.2009.263)
From: inst/doc/sparkr-vignettes.html
Status: 200
Message: OK
```
The links were being redirected now. This PR checked all hyperlinks in the docs such as `href{...}` and `url{...}`, and fixed all in SparkR:
- Fix two problems above.
- Fix http to https
- Fix `https://www.apache.org/https://spark.apache.org/` -> `https://www.apache.orghttps://spark.apache.org`.
### Why are the changes needed?
For CRAN submission.
### Does this PR introduce _any_ user-facing change?
Virtually no because it's just cleanup that CRAN requires.
### How was this patch tested?
Manually tested by clicking the links
Closes#31058 from HyukjinKwon/SPARK-34021.
Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
When sparkR is run at log level INFO, a summary of how the worker spent its time processing the partition is printed. There is a logic error where it is over-reporting the time inputting rows.
In detail: the variable inputElap in a wider context is used to mark the end of reading rows, but in the part changed here it was used as a local variable for measuring the beginning of compute time in a loop over the groups in the partition. Thus, the error is not observable if there is only one group per partition, which is what you get in unit tests.
For our application, here's what a log entry looks like before these changes were applied:
`20/10/09 04:08:58 INFO RRunner: Times: boot = 0.013 s, init = 0.005 s, broadcast = 0.000 s, read-input = 529.471 s, compute = 492.037 s, write-output = 0.020 s, total = 1021.546 s`
this indicates that we're spending more time reading rows than operating on the rows.
After these changes, it looks like this:
`20/12/15 06:43:29 INFO RRunner: Times: boot = 0.013 s, init = 0.010 s, broadcast = 0.000 s, read-input = 120.275 s, compute = 1680.161 s, write-output = 0.045 s, total = 1812.553 s
`
### Why are the changes needed?
Metrics shouldn't mislead?
### Does this PR introduce _any_ user-facing change?
Aside from no longer misleading, no
### How was this patch tested?
unit tests passed. Field test results seem plausible
Closes#31021 from WamBamBoozle/input_timing.
Authored-by: Tom.Howland <Tom.Howland@target.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Change the strategy for how the varargs are handled in the default `mutate` method
### Why are the changes needed?
Bugfix -- `deparse` + `sapply` not working as intended due to `width.cutoff`
### Does this PR introduce any user-facing change?
Yes, bugfix. Shouldn't change any working code.
### How was this patch tested?
None! yet.
Closes#28386 from MichaelChirico/r-mutate-deparse.
Lead-authored-by: Michael Chirico <michael.chirico@grabtaxi.com>
Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This PR aims to update `master` branch version to 3.2.0-SNAPSHOT.
### Why are the changes needed?
Start to prepare Apache Spark 3.2.0.
### Does this PR introduce _any_ user-facing change?
N/A.
### How was this patch tested?
Pass the CIs.
Closes#30606 from dongjoon-hyun/SPARK-3.2.
Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
### What changes were proposed in this pull request?
This PR adds `array_to_vector` to R API.
### Why are the changes needed?
Feature parity.
### Does this PR introduce _any_ user-facing change?
New function exposed in the public API.
### How was this patch tested?
New unit test.
Manual verification of the documentation examples.
Closes#30561 from zero323/SPARK-33622.
Authored-by: zero323 <mszymkiewicz@gmail.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
### What changes were proposed in this pull request?
This PR intends to fix typos in the sub-modules:
* `R`
* `common`
* `dev`
* `mlib`
* `external`
* `project`
* `streaming`
* `resource-managers`
* `python`
Split per srowen https://github.com/apache/spark/pull/30323#issuecomment-728981618
NOTE: The misspellings have been reported at 706a726f87 (commitcomment-44064356)
### Why are the changes needed?
Misspelled words make it harder to read / understand content.
### Does this PR introduce _any_ user-facing change?
There are various fixes to documentation, etc...
### How was this patch tested?
No testing was performed
Closes#30402 from jsoref/spelling-R_common_dev_mlib_external_project_streaming_resource-managers_python.
Authored-by: Josh Soref <jsoref@users.noreply.github.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
### What changes were proposed in this pull request?
This PR adds the following functions (introduced in Scala API with SPARK-33061):
- `acosh`
- `asinh`
- `atanh`
to Python and R.
### Why are the changes needed?
Feature parity.
### Does this PR introduce _any_ user-facing change?
New functions.
### How was this patch tested?
New unit tests.
Closes#30501 from zero323/SPARK-33563.
Authored-by: zero323 <mszymkiewicz@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Adds `from_avro` and `to_avro` functions to SparkR.
### Why are the changes needed?
Feature parity.
### Does this PR introduce _any_ user-facing change?
New functions exposed in SparkR API.
### How was this patch tested?
New unit tests.
Closes#30216 from zero323/SPARK-33304.
Authored-by: zero323 <mszymkiewicz@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
add prompt information about current applicationId, current URL and master info when pyspark / sparkR starts.
### Why are the changes needed?
The information printed when pyspark/sparkR starts does not prompt the basic information of current application, and it is not convenient when used pyspark/sparkR in dos.
### Does this PR introduce _any_ user-facing change?
no
### How was this patch tested?
manual test result shows below:
Closes#30266 from akiyamaneko/pyspark-hint-info.
Authored-by: neko <echohlne@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This PR modifies `R/pkg/tests/run-all.R` by:
- Removing `testthat` 1.x support, as Jenkins has been upgraded to 2.x with SPARK-30637 and this code is no longer relevant.
- Add `testthat` 3.x support to avoid AppVeyor failures.
### Why are the changes needed?
Currently used internal API has been removed in the latest `testthat` release.
### Does this PR introduce _any_ user-facing change?
No.
### How was this patch tested?
Tests executed against `testthat == 2.3.2` and `testthat == 3.0.0`
Closes#30219 from zero323/SPARK-33313.
Authored-by: zero323 <mszymkiewicz@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Return schema in SQL format instead of Catalog string from the SchemaOfCsv expression.
### Why are the changes needed?
To unify output of the `schema_of_json()` and `schema_of_csv()`.
### Does this PR introduce _any_ user-facing change?
Yes, they can but `schema_of_csv()` is usually used in combination with `from_csv()`, so, the format of schema shouldn't be much matter.
Before:
```
> SELECT schema_of_csv('1,abc');
struct<_c0:int,_c1:string>
```
After:
```
> SELECT schema_of_csv('1,abc');
STRUCT<`_c0`: INT, `_c1`: STRING>
```
### How was this patch tested?
By existing test suites `CsvFunctionsSuite` and `CsvExpressionsSuite`.
Closes#30180 from MaxGekk/schema_of_csv-sql-schema.
Authored-by: Max Gekk <max.gekk@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Return schema in SQL format instead of Catalog string from the `SchemaOfJson` expression.
### Why are the changes needed?
In some cases, `from_json()` cannot parse schemas returned by `schema_of_json`, for instance, when JSON fields have spaces (gaps). Such fields will be quoted after the changes, and can be parsed by `from_json()`.
Here is the example:
```scala
val in = Seq("""{"a b": 1}""").toDS()
in.select(from_json('value, schema_of_json("""{"a b": 100}""")) as "parsed")
```
raises the exception:
```
== SQL ==
struct<a b:bigint>
------^^^
at org.apache.spark.sql.catalyst.parser.ParseException.withCommand(ParseDriver.scala:263)
at org.apache.spark.sql.catalyst.parser.AbstractSqlParser.parse(ParseDriver.scala:130)
at org.apache.spark.sql.catalyst.parser.AbstractSqlParser.parseTableSchema(ParseDriver.scala:76)
at org.apache.spark.sql.types.DataType$.fromDDL(DataType.scala:131)
at org.apache.spark.sql.catalyst.expressions.ExprUtils$.evalTypeExpr(ExprUtils.scala:33)
at org.apache.spark.sql.catalyst.expressions.JsonToStructs.<init>(jsonExpressions.scala:537)
at org.apache.spark.sql.functions$.from_json(functions.scala:4141)
```
### Does this PR introduce _any_ user-facing change?
Yes. For example, `schema_of_json` for the input `{"col":0}`.
Before: `struct<col:bigint>`
After: `STRUCT<`col`: BIGINT>`
### How was this patch tested?
By existing test suites `JsonFunctionsSuite` and `JsonExpressionsSuite`.
Closes#30172 from MaxGekk/schema_of_json-sql-schema.
Authored-by: Max Gekk <max.gekk@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This PR adds the following `Column` methods to R API:
- asc_nulls_first
- asc_nulls_last
- desc_nulls_first
- desc_nulls_last
### Why are the changes needed?
Feature parity.
### Does this PR introduce _any_ user-facing change?
No, new methods.
### How was this patch tested?
New unit tests.
Closes#30159 from zero323/SPARK-33258.
Authored-by: zero323 <mszymkiewicz@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
As [SPARK-13860](https://issues.apache.org/jira/browse/SPARK-13860) stated, TPCDS Query 39 returns wrong results using SparkSQL. The root cause is that when stddev_samp is applied to a single element set, with TPCDS answer, it return null; as in SparkSQL, it return Double.NaN which caused the wrong result.
Add an extra legacy config to fallback into the NaN logical, and return null by default to align with TPCDS standard.
### Why are the changes needed?
SQL correctness issue.
### Does this PR introduce any user-facing change?
Yes. See sql-migration-guide
In Spark 3.1, statistical aggregation function includes `std`, `stddev`, `stddev_samp`, `variance`, `var_samp`, `skewness`, `kurtosis`, `covar_samp`, `corr` will return `NULL` instead of `Double.NaN` when `DivideByZero` occurs during expression evaluation, for example, when `stddev_samp` applied on a single element set. In Spark version 3.0 and earlier, it will return `Double.NaN` in such case. To restore the behavior before Spark 3.1, you can set `spark.sql.legacy.statisticalAggregate` to `true`.
### How was this patch tested?
Updated DataFrameAggregateSuite/DataFrameWindowFunctionsSuite to test both default and legacy behavior.
Adjust DataFrameWindowFunctionsSuite/SQLQueryTestSuite and some R case to update to the default return null behavior.
Closes#29983 from leanken/leanken-SPARK-13860.
Authored-by: xuewei.linxuewei <xuewei.linxuewei@alibaba-inc.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
### What changes were proposed in this pull request?
- Annotated return types of `assert_true` and `raise_error` as discussed [here](https://github.com/apache/spark/pull/29947#pullrequestreview-504495801).
- Add `assert_true` and `raise_error` to SparkR NAMESPACE.
- Validating message vector size in SparkR as discussed [here](https://github.com/apache/spark/pull/29947#pullrequestreview-504539004).
### Why are the changes needed?
As discussed in review for #29947.
### Does this PR introduce _any_ user-facing change?
No.
### How was this patch tested?
- Existing tests.
- Validation of annotations using MyPy
Closes#29978 from zero323/SPARK-32793-FOLLOW-UP.
Authored-by: zero323 <mszymkiewicz@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
## What changes were proposed in this pull request?
Adds a SQL function `raise_error` which underlies the refactored `assert_true` function. `assert_true` now also (optionally) accepts a custom error message field.
`raise_error` is exposed in SQL, Python, Scala, and R.
`assert_true` was previously only exposed in SQL; it is now also exposed in Python, Scala, and R.
### Why are the changes needed?
Improves usability of `assert_true` by clarifying error messaging, and adds the useful helper function `raise_error`.
### Does this PR introduce _any_ user-facing change?
Yes:
- Adds `raise_error` function to the SQL, Python, Scala, and R APIs.
- Adds `assert_true` function to the SQL, Python and R APIs.
### How was this patch tested?
Adds unit tests in SQL, Python, Scala, and R for `assert_true` and `raise_error`.
Closes#29947 from karenfeng/spark-32793.
Lead-authored-by: Karen Feng <karen.feng@databricks.com>
Co-authored-by: Hyukjin Kwon <gurwls223@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This PR adds `dropFields` method to:
- PySpark `Column`
- SparkR `Column`
### Why are the changes needed?
Feature parity.
### Does this PR introduce _any_ user-facing change?
No, new API.
### How was this patch tested?
- New unit tests.
- Manual verification of examples / doctests.
- Manual run of MyPy tests
Closes#29967 from zero323/SPARK-32511-FOLLOW-UP-PYSPARK-SPARKR.
Authored-by: zero323 <mszymkiewicz@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
- Reorder choices of `dtype` to match Scala defaults.
- Add example to ml_functions.
### Why are the changes needed?
As requested:
- https://github.com/apache/spark/pull/29917#pullrequestreview-501715344
- https://github.com/apache/spark/pull/29917#pullrequestreview-501716521
### Does this PR introduce _any_ user-facing change?
No (changes to newly added component).
### How was this patch tested?
Existing tests.
Closes#29944 from zero323/SPARK-33040-FOLLOW-UP.
Authored-by: zero323 <mszymkiewicz@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Add SparkR wrapper for `o.a.s.ml.functions.vector_to_array`
### Why are the changes needed?
- Currently ML vectors, including predictions, are almost inaccessible to R users. That's is a serious loss of functionality.
- Feature parity.
### Does this PR introduce _any_ user-facing change?
Yes, new R function is added.
### How was this patch tested?
- New unit tests.
- Manual verification.
Closes#29917 from zero323/SPARK-33040.
Authored-by: zero323 <mszymkiewicz@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
