Commit graph

21120 commits

Author SHA1 Message Date
Yinan Li 171f6ddadc [SPARK-22757][KUBERNETES] Enable use of remote dependencies (http, s3, gcs, etc.) in Kubernetes mode
## What changes were proposed in this pull request?

This PR expands the Kubernetes mode to be able to use remote dependencies on http/https endpoints, GCS, S3, etc. It adds steps for configuring and appending the Kubernetes init-container into the driver and executor pods for downloading remote dependencies.
[Init-containers](https://kubernetes.io/docs/concepts/workloads/pods/init-containers/), as the name suggests, are containers that are run to completion before the main containers start, and are often used to perform initialization tasks prior to starting the main containers. We use init-containers to localize remote application dependencies before the driver/executors start running. The code that the init-container runs is also included. This PR also adds a step to the driver and executors for mounting user-specified secrets that may store credentials for accessing data storage, e.g., S3 and Google Cloud Storage (GCS), into the driver and executors.

## How was this patch tested?

* The patch contains unit tests which are passing.
* Manual testing: `./build/mvn -Pkubernetes clean package` succeeded.
* Manual testing of the following cases:
  * [x] Running SparkPi using container-local spark-example jar.
  * [x] Running SparkPi using container-local spark-example jar with user-specific secret mounted.
  * [x] Running SparkPi using spark-example jar hosted remotely on an https endpoint.

cc rxin felixcheung mateiz (shepherd)
k8s-big-data SIG members & contributors: mccheah foxish ash211 ssuchter varunkatta kimoonkim erikerlandson tnachen ifilonenko liyinan926
reviewers: vanzin felixcheung jiangxb1987 mridulm

Author: Yinan Li <liyinan926@gmail.com>

Closes #19954 from liyinan926/init-container.
2017-12-28 13:44:44 +09:00
Shixiong Zhu 32ec269d08 [SPARK-22909][SS] Move Structured Streaming v2 APIs to streaming folder
## What changes were proposed in this pull request?

This PR moves Structured Streaming v2 APIs to streaming folder as following:
```
sql/core/src/main/java/org/apache/spark/sql/sources/v2/streaming
├── ContinuousReadSupport.java
├── ContinuousWriteSupport.java
├── MicroBatchReadSupport.java
├── MicroBatchWriteSupport.java
├── reader
│   ├── ContinuousDataReader.java
│   ├── ContinuousReader.java
│   ├── MicroBatchReader.java
│   ├── Offset.java
│   └── PartitionOffset.java
└── writer
    └── ContinuousWriter.java
```

## How was this patch tested?

Jenkins

Author: Shixiong Zhu <zsxwing@gmail.com>

Closes #20093 from zsxwing/move.
2017-12-28 12:35:17 +08:00
Kazuaki Ishizaki 5683984520 [SPARK-18016][SQL][FOLLOW-UP] Code Generation: Constant Pool Limit - reduce entries for mutable state
## What changes were proposed in this pull request?

This PR addresses additional review comments in #19811

## How was this patch tested?

Existing test suites

Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com>

Closes #20036 from kiszk/SPARK-18066-followup.
2017-12-28 12:28:19 +08:00
WeichenXu 753793bc84 [SPARK-22899][ML][STREAMING] Fix OneVsRestModel transform on streaming data failed.
## What changes were proposed in this pull request?

Fix OneVsRestModel transform on streaming data failed.

## How was this patch tested?

UT will be added soon, once #19979 merged. (Need a helper test method there)

Author: WeichenXu <weichen.xu@databricks.com>

Closes #20077 from WeichenXu123/fix_ovs_model_transform.
2017-12-27 17:31:12 -08:00
Marco Gaido 774715d5c7 [SPARK-22904][SQL] Add tests for decimal operations and string casts
## What changes were proposed in this pull request?

Test coverage for arithmetic operations leading to:

 1. Precision loss
 2. Overflow

Moreover, tests for casting bad string to other input types and for using bad string as operators of some functions.

## How was this patch tested?

added tests

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #20084 from mgaido91/SPARK-22904.
2017-12-27 23:53:10 +08:00
Takuya UESHIN b8bfce51ab [SPARK-22324][SQL][PYTHON][FOLLOW-UP] Update setup.py file.
## What changes were proposed in this pull request?

This is a follow-up pr of #19884 updating setup.py file to add pyarrow dependency.

## How was this patch tested?

Existing tests.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #20089 from ueshin/issues/SPARK-22324/fup1.
2017-12-27 20:51:26 +09:00
xu.wenchun 6674acd1ed [SPARK-22846][SQL] Fix table owner is null when creating table through spark sql or thriftserver
## What changes were proposed in this pull request?
fix table owner is null when create new table through spark sql

## How was this patch tested?
manual test.
1、first create a table
2、then select the table properties from mysql which connected to hive metastore

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: xu.wenchun <xu.wenchun@immomo.com>

Closes #20034 from BruceXu1991/SPARK-22846.
2017-12-27 10:08:32 +08:00
Yuming Wang 91d1b300d4 [SPARK-22894][SQL] DateTimeOperations should accept SQL like string type
## What changes were proposed in this pull request?

`DateTimeOperations` accept [`StringType`](ae998ec2b5/sql/catalyst/src/main/scala/org/apache/spark/sql/catalyst/analysis/TypeCoercion.scala (L669)),  but:

```
spark-sql> SELECT '2017-12-24' + interval 2 months 2 seconds;
Error in query: cannot resolve '(CAST('2017-12-24' AS DOUBLE) + interval 2 months 2 seconds)' due to data type mismatch: differing types in '(CAST('2017-12-24' AS DOUBLE) + interval 2 months 2 seconds)' (double and calendarinterval).; line 1 pos 7;
'Project [unresolvedalias((cast(2017-12-24 as double) + interval 2 months 2 seconds), None)]
+- OneRowRelation
spark-sql>
```

After this PR:
```
spark-sql> SELECT '2017-12-24' + interval 2 months 2 seconds;
2018-02-24 00:00:02
Time taken: 0.2 seconds, Fetched 1 row(s)

```

## How was this patch tested?

unit tests

Author: Yuming Wang <wgyumg@gmail.com>

Closes #20067 from wangyum/SPARK-22894.
2017-12-26 09:40:41 -08:00
Wenchen Fan 9348e68420 [SPARK-22833][EXAMPLE] Improvement SparkHive Scala Examples
## What changes were proposed in this pull request?
Some improvements:
1. Point out we are using both Spark SQ native syntax and HQL syntax in the example
2. Avoid using the same table name with temp view, to not confuse users.
3. Create the external hive table with a directory that already has data, which is a more common use case.
4. Remove the usage of `spark.sql.parquet.writeLegacyFormat`. This config was introduced by https://github.com/apache/spark/pull/8566 and has nothing to do with Hive.
5. Remove `repartition` and `coalesce` example. These 2 are not Hive specific, we should put them in a different example file. BTW they can't accurately control the number of output files, `spark.sql.files.maxRecordsPerFile` also controls it.

## How was this patch tested?

N/A

Author: Wenchen Fan <wenchen@databricks.com>

Closes #20081 from cloud-fan/minor.
2017-12-26 09:37:39 -08:00
Marco Gaido ff48b1b338 [SPARK-22901][PYTHON] Add deterministic flag to pyspark UDF
## What changes were proposed in this pull request?

In SPARK-20586 the flag `deterministic` was added to Scala UDF, but it is not available for python UDF. This flag is useful for cases when the UDF's code can return different result with the same input. Due to optimization, duplicate invocations may be eliminated or the function may even be invoked more times than it is present in the query. This can lead to unexpected behavior.

This PR adds the deterministic flag, via the `asNondeterministic` method, to let the user mark the function as non-deterministic and therefore avoid the optimizations which might lead to strange behaviors.

## How was this patch tested?

Manual tests:
```
>>> from pyspark.sql.functions import *
>>> from pyspark.sql.types import *
>>> df_br = spark.createDataFrame([{'name': 'hello'}])
>>> import random
>>> udf_random_col =  udf(lambda: int(100*random.random()), IntegerType()).asNondeterministic()
>>> df_br = df_br.withColumn('RAND', udf_random_col())
>>> random.seed(1234)
>>> udf_add_ten =  udf(lambda rand: rand + 10, IntegerType())
>>> df_br.withColumn('RAND_PLUS_TEN', udf_add_ten('RAND')).show()
+-----+----+-------------+
| name|RAND|RAND_PLUS_TEN|
+-----+----+-------------+
|hello|   3|           13|
+-----+----+-------------+

```

Author: Marco Gaido <marcogaido91@gmail.com>
Author: Marco Gaido <mgaido@hortonworks.com>

Closes #19929 from mgaido91/SPARK-22629.
2017-12-26 06:39:40 -08:00
Takuya UESHIN eb386be1ed [SPARK-21552][SQL] Add DecimalType support to ArrowWriter.
## What changes were proposed in this pull request?

Decimal type is not yet supported in `ArrowWriter`.
This is adding the decimal type support.

## How was this patch tested?

Added a test to `ArrowConvertersSuite`.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #18754 from ueshin/issues/SPARK-21552.
2017-12-26 21:37:25 +09:00
Yash Sharma 0e6833006d [SPARK-20168][DSTREAM] Add changes to use kinesis fetches from specific timestamp
## What changes were proposed in this pull request?

Kinesis client can resume from a specified timestamp while creating a stream. We should have option to pass a timestamp in config to allow kinesis to resume from the given timestamp.

The patch introduces a new `KinesisInitialPositionInStream` that takes the `InitialPositionInStream` with the `timestamp` information that can be used to resume kinesis fetches from the provided timestamp.

## How was this patch tested?

Unit Tests

cc : budde brkyvz

Author: Yash Sharma <ysharma@atlassian.com>

Closes #18029 from yssharma/ysharma/kcl_resume.
2017-12-26 09:50:39 +02:00
Dongjoon Hyun be03d3ad79 [SPARK-22893][SQL][HOTFIX] Fix a error message of VersionsSuite
## What changes were proposed in this pull request?

https://github.com/apache/spark/pull/20064 breaks Jenkins tests because it missed to update one error message for Hive 0.12 and Hive 0.13. This PR fixes that.
- https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-sbt-hadoop-2.7/3924/
- https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-sbt-hadoop-2.6/3977/
- https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-maven-hadoop-2.7/4226/
- https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-maven-hadoop-2.6/4260/

## How was this patch tested?

Pass the Jenkins without failure.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #20079 from dongjoon-hyun/SPARK-22893.
2017-12-25 16:17:39 -08:00
Takuya UESHIN 12d20dd75b [SPARK-22874][PYSPARK][SQL][FOLLOW-UP] Modify error messages to show actual versions.
## What changes were proposed in this pull request?

This is a follow-up pr of #20054 modifying error messages for both pandas and pyarrow to show actual versions.

## How was this patch tested?

Existing tests.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #20074 from ueshin/issues/SPARK-22874_fup1.
2017-12-25 20:29:10 +09:00
Yuming Wang 33ae2437ba [SPARK-22893][SQL] Unified the data type mismatch message
## What changes were proposed in this pull request?

We should use `dataType.simpleString` to unified the data type mismatch message:
Before:
```
spark-sql> select cast(1 as binary);
Error in query: cannot resolve 'CAST(1 AS BINARY)' due to data type mismatch: cannot cast IntegerType to BinaryType; line 1 pos 7;
```
After:
```
park-sql> select cast(1 as binary);
Error in query: cannot resolve 'CAST(1 AS BINARY)' due to data type mismatch: cannot cast int to binary; line 1 pos 7;
```

## How was this patch tested?

Exist test.

Author: Yuming Wang <wgyumg@gmail.com>

Closes #20064 from wangyum/SPARK-22893.
2017-12-25 01:14:09 -08:00
WeichenXu fba03133d1 [SPARK-22707][ML] Optimize CrossValidator memory occupation by models in fitting
## What changes were proposed in this pull request?

Via some test I found CrossValidator still exists memory issue, it will still occupy `O(n*sizeof(model))` memory for holding models when fitting, if well optimized, it should be `O(parallelism*sizeof(model))`

This is because modelFutures will hold the reference to model object after future is complete (we can use `future.value.get.get` to fetch it), and the `Future.sequence` and the `modelFutures` array holds references to each model future. So all model object are keep referenced. So it will still occupy `O(n*sizeof(model))` memory.

I fix this by merging the `modelFuture` and `foldMetricFuture` together, and use `atomicInteger` to statistic complete fitting tasks and when all done, trigger `trainingDataset.unpersist`.

I ever commented this issue on the old PR [SPARK-19357]
https://github.com/apache/spark/pull/16774#pullrequestreview-53674264
unfortunately, at that time I do not realize that the issue still exists, but now I confirm it and create this PR to fix it.

## Discussion
I give 3 approaches which we can compare, after discussion I realized none of them is ideal, we have to make a trade-off.

**After discussion with jkbradley , choose approach 3**

### Approach 1
~~The approach proposed by MrBago at~~ https://github.com/apache/spark/pull/19904#discussion_r156751569
~~This approach resolve the model objects referenced issue, allow the model objects to be GCed in time. **BUT, in some cases, it still do not resolve the O(N) model memory occupation issue**. Let me use an extreme case to describe it:~~
~~suppose we set `parallelism = 1`, and there're 100 paramMaps. So we have 100 fitting & evaluation tasks. In this approach, because of `parallelism = 1`, the code have to wait 100 fitting tasks complete, **(at this time the memory occupation by models already reach 100 * sizeof(model) )** and then it will unpersist training dataset and then do 100 evaluation tasks.~~

### Approach 2
~~This approach is my PR old version code~~ 2cc7c28f38
~~This approach can make sure at any case, the peak memory occupation by models to be `O(numParallelism * sizeof(model))`, but, it exists an issue that, in some extreme case, the "unpersist training dataset" will be delayed until most of the evaluation tasks complete. Suppose the case
 `parallelism = 1`, and there're 100 fitting & evaluation tasks, each fitting&evaluation task have to be executed one by one, so only after the first 99 fitting&evaluation tasks and the 100th fitting task complete, the "unpersist training dataset" will be triggered.~~

### Approach 3
After I compared approach 1 and approach 2, I realized that, in the case which parallelism is low but there're many fitting & evaluation tasks, we cannot achieve both of the following two goals:
- Make the peak memory occupation by models(driver-side) to be O(parallelism * sizeof(model))
- unpersist training dataset before most of the evaluation tasks started.

So I vote for a simpler approach, move the unpersist training dataset to the end (Does this really matters ?)
Because the goal 1 is more important, we must make sure the peak memory occupation by models (driver-side) to be O(parallelism * sizeof(model)), otherwise it will bring high risk of OOM.
Like following code:
```
      val foldMetricFutures = epm.zipWithIndex.map { case (paramMap, paramIndex) =>
        Future[Double] {
          val model = est.fit(trainingDataset, paramMap).asInstanceOf[Model[_]]
          //...other minor codes
          val metric = eval.evaluate(model.transform(validationDataset, paramMap))
          logDebug(s"Got metric metricformodeltrainedwithparamMap.")
          metric
        } (executionContext)
      }
      val foldMetrics = foldMetricFutures.map(ThreadUtils.awaitResult(_, Duration.Inf))
      trainingDataset.unpersist() // <------- unpersist at the end
      validationDataset.unpersist()
```

## How was this patch tested?

N/A

Author: WeichenXu <weichen.xu@databricks.com>

Closes #19904 from WeichenXu123/fix_cross_validator_memory_issue.
2017-12-24 22:57:53 -08:00
sujithjay 0bf1a74a77 [SPARK-22465][CORE] Add a safety-check to RDD defaultPartitioner
## What changes were proposed in this pull request?
In choosing a Partitioner to use for a cogroup-like operation between a number of RDDs, the default behaviour was if some of the RDDs already have a partitioner, we choose the one amongst them with the maximum number of partitions.

This behaviour, in some cases, could hit the 2G limit (SPARK-6235). To illustrate one such scenario, consider two RDDs:
rDD1: with smaller data and smaller number of partitions, alongwith a Partitioner.
rDD2: with much larger data and a larger number of partitions, without a Partitioner.

The cogroup of these two RDDs could hit the 2G limit, as a larger amount of data is shuffled into a smaller number of partitions.

This PR introduces a safety-check wherein the Partitioner is chosen only if either of the following conditions are met:
1. if the number of partitions of the RDD associated with the Partitioner is greater than or equal to the max number of upstream partitions; or
2. if the number of partitions of the RDD associated with the Partitioner is less than and within a single order of magnitude of the max number of upstream partitions.

## How was this patch tested?
Unit tests in PartitioningSuite and PairRDDFunctionsSuite

Author: sujithjay <sujith@logistimo.com>

Closes #20002 from sujithjay/SPARK-22465.
2017-12-24 11:14:30 -08:00
Shivaram Venkataraman 1219d7a434 [SPARK-22889][SPARKR] Set overwrite=T when install SparkR in tests
## What changes were proposed in this pull request?

Since all CRAN checks go through the same machine, if there is an older partial download or partial install of Spark left behind the tests fail. This PR overwrites the install files when running tests. This shouldn't affect Jenkins as `SPARK_HOME` is set when running Jenkins tests.

## How was this patch tested?

Test manually by running `R CMD check --as-cran`

Author: Shivaram Venkataraman <shivaram@cs.berkeley.edu>

Closes #20060 from shivaram/sparkr-overwrite-cran.
2017-12-23 10:27:14 -08:00
hyukjinkwon aeb45df668 [SPARK-22844][R] Adds date_trunc in R API
## What changes were proposed in this pull request?

This PR adds `date_trunc` in R API as below:

```r
> df <- createDataFrame(list(list(a = as.POSIXlt("2012-12-13 12:34:00"))))
> head(select(df, date_trunc("hour", df$a)))
  date_trunc(hour, a)
1 2012-12-13 12:00:00
```

## How was this patch tested?

Unit tests added in `R/pkg/tests/fulltests/test_sparkSQL.R`.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #20031 from HyukjinKwon/r-datetrunc.
2017-12-24 01:18:11 +09:00
hyukjinkwon f6084a88f0 [HOTFIX] Fix Scala style checks
## What changes were proposed in this pull request?

This PR fixes a style that broke the build.

## How was this patch tested?

Manually tested.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #20065 from HyukjinKwon/minor-style.
2017-12-24 01:16:12 +09:00
CNRui ea2642eb0e [SPARK-20694][EXAMPLES] Update SQLDataSourceExample.scala
## What changes were proposed in this pull request?

Create table using the right DataFrame. peopleDF->usersDF

peopleDF:
+----+-------+
| age|   name|
+----+-------+
usersDF:
+------+--------------+----------------+
|  name|favorite_color|favorite_numbers|
+------+--------------+----------------+

## How was this patch tested?

Manually tested.

Author: CNRui <13266776177@163.com>

Closes #20052 from CNRui/patch-2.
2017-12-23 08:18:08 -06:00
chetkhatri 86db9b2d7d [SPARK-22833][IMPROVEMENT] in SparkHive Scala Examples
## What changes were proposed in this pull request?

SparkHive Scala Examples Improvement made:
* Writing DataFrame / DataSet to Hive Managed , Hive External table using different storage format.
* Implementation of Partition, Reparition, Coalesce with appropriate example.

## How was this patch tested?
* Patch has been tested manually and by running ./dev/run-tests.

Author: chetkhatri <ckhatrimanjal@gmail.com>

Closes #20018 from chetkhatri/scala-sparkhive-examples.
2017-12-23 08:13:34 -06:00
Jose Torres 8941a4abca [SPARK-22789] Map-only continuous processing execution
## What changes were proposed in this pull request?

Basic continuous execution, supporting map/flatMap/filter, with commits and advancement through RPC.

## How was this patch tested?

new unit-ish tests (exercising execution end to end)

Author: Jose Torres <jose@databricks.com>

Closes #19984 from jose-torres/continuous-impl.
2017-12-22 23:05:03 -08:00
Bago Amirbekian d23dc5b8ef [SPARK-22346][ML] VectorSizeHint Transformer for using VectorAssembler in StructuredSteaming
## What changes were proposed in this pull request?

A new VectorSizeHint transformer was added. This transformer is meant to be used as a pipeline stage ahead of VectorAssembler, on vector columns, so that VectorAssembler can join vectors in a streaming context where the size of the input vectors is otherwise not known.

## How was this patch tested?

Unit tests.

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: Bago Amirbekian <bago@databricks.com>

Closes #19746 from MrBago/vector-size-hint.
2017-12-22 14:05:57 -08:00
Takuya UESHIN 13190a4f60 [SPARK-22874][PYSPARK][SQL] Modify checking pandas version to use LooseVersion.
## What changes were proposed in this pull request?

Currently we check pandas version by capturing if `ImportError` for the specific imports is raised or not but we can compare `LooseVersion` of the version strings as the same as we're checking pyarrow version.

## How was this patch tested?

Existing tests.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #20054 from ueshin/issues/SPARK-22874.
2017-12-22 20:09:51 +09:00
Michael Armbrust 8df1da396f [SPARK-22862] Docs on lazy elimination of columns missing from an encoder
This behavior has confused some users, so lets clarify it.

Author: Michael Armbrust <michael@databricks.com>

Closes #20048 from marmbrus/datasetAsDocs.
2017-12-21 21:38:16 -08:00
Anirudh Ramanathan 22e1849bcf [SPARK-22866][K8S] Fix path issue in Kubernetes dockerfile
## What changes were proposed in this pull request?

The path was recently changed in https://github.com/apache/spark/pull/19946, but the dockerfile was not updated.
This is a trivial 1 line fix.

## How was this patch tested?

`./sbin/build-push-docker-images.sh -r spark-repo -t latest build`

cc/ vanzin mridulm rxin jiangxb1987 liyinan926

Author: Anirudh Ramanathan <ramanathana@google.com>
Author: foxish <ramanathana@google.com>

Closes #20051 from foxish/patch-1.
2017-12-21 21:03:10 -08:00
Zheng RuiFeng a36b78b0e4 [SPARK-22450][CORE][MLLIB][FOLLOWUP] safely register class for mllib - LabeledPoint/VectorWithNorm/TreePoint
## What changes were proposed in this pull request?
register following classes in Kryo:
`org.apache.spark.mllib.regression.LabeledPoint`
`org.apache.spark.mllib.clustering.VectorWithNorm`
`org.apache.spark.ml.feature.LabeledPoint`
`org.apache.spark.ml.tree.impl.TreePoint`

`org.apache.spark.ml.tree.impl.BaggedPoint` seems also need to be registered, but I don't know how to do it in this safe way.
WeichenXu123 cloud-fan

## How was this patch tested?
added tests

Author: Zheng RuiFeng <ruifengz@foxmail.com>

Closes #19950 from zhengruifeng/labeled_kryo.
2017-12-21 20:20:04 -06:00
Marco Gaido c6f01caded [SPARK-22750][SQL] Reuse mutable states when possible
## What changes were proposed in this pull request?

The PR introduces a new method `addImmutableStateIfNotExists ` to `CodeGenerator` to allow reusing and sharing the same global variable between different Expressions. This helps reducing the number of global variables needed, which is important to limit the impact on the constant pool.

## How was this patch tested?

added UTs

Author: Marco Gaido <marcogaido91@gmail.com>
Author: Marco Gaido <mgaido@hortonworks.com>

Closes #19940 from mgaido91/SPARK-22750.
2017-12-22 10:13:26 +08:00
Marcelo Vanzin c0abb1d994 [SPARK-22854][UI] Read Spark version from event logs.
The code was ignoring SparkListenerLogStart, which was added
somewhat recently to record the Spark version used to generate
an event log.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #20049 from vanzin/SPARK-22854.
2017-12-22 09:25:39 +08:00
foxish 7ab165b706 [SPARK-22648][K8S] Spark on Kubernetes - Documentation
What changes were proposed in this pull request?

This PR contains documentation on the usage of Kubernetes scheduler in Spark 2.3, and a shell script to make it easier to build docker images required to use the integration. The changes detailed here are covered by https://github.com/apache/spark/pull/19717 and https://github.com/apache/spark/pull/19468 which have merged already.

How was this patch tested?
The script has been in use for releases on our fork. Rest is documentation.

cc rxin mateiz (shepherd)
k8s-big-data SIG members & contributors: foxish ash211 mccheah liyinan926 erikerlandson ssuchter varunkatta kimoonkim tnachen ifilonenko
reviewers: vanzin felixcheung jiangxb1987 mridulm

TODO:
- [x] Add dockerfiles directory to built distribution. (https://github.com/apache/spark/pull/20007)
- [x] Change references to docker to instead say "container" (https://github.com/apache/spark/pull/19995)
- [x] Update configuration table.
- [x] Modify spark.kubernetes.allocation.batch.delay to take time instead of int (#20032)

Author: foxish <ramanathana@google.com>

Closes #19946 from foxish/update-k8s-docs.
2017-12-21 17:21:11 -08:00
Imran Rashid 7beb375bf4 [SPARK-22861][SQL] SQLAppStatusListener handles multi-job executions.
When one execution has multiple jobs, we need to append to the set of
stages, not replace them on every job.

Added unit test and ran existing tests on jenkins

Author: Imran Rashid <irashid@cloudera.com>

Closes #20047 from squito/SPARK-22861.
2017-12-21 15:37:55 -08:00
Tejas Patil fe65361b05 [SPARK-22042][FOLLOW-UP][SQL] ReorderJoinPredicates can break when child's partitioning is not decided
## What changes were proposed in this pull request?

This is a followup PR of https://github.com/apache/spark/pull/19257 where gatorsmile had left couple comments wrt code style.

## How was this patch tested?

Doesn't change any functionality. Will depend on build to see if no checkstyle rules are violated.

Author: Tejas Patil <tejasp@fb.com>

Closes #20041 from tejasapatil/followup_19257.
2017-12-21 09:22:08 -08:00
Yuming Wang 4e107fdb74 [SPARK-22822][TEST] Basic tests for WindowFrameCoercion and DecimalPrecision
## What changes were proposed in this pull request?

Test Coverage for `WindowFrameCoercion` and `DecimalPrecision`, this is a Sub-tasks for [SPARK-22722](https://issues.apache.org/jira/browse/SPARK-22722).

## How was this patch tested?

N/A

Author: Yuming Wang <wgyumg@gmail.com>

Closes #20008 from wangyum/SPARK-22822.
2017-12-21 09:18:27 -08:00
Wenchen Fan d3a1d9527b [SPARK-22786][SQL] only use AppStatusPlugin in history server
## What changes were proposed in this pull request?

In https://github.com/apache/spark/pull/19681 we introduced a new interface called `AppStatusPlugin`, to register listeners and set up the UI for both live and history UI.

However I think it's an overkill for live UI. For example, we should not register `SQLListener` if users are not using SQL functions. Previously we register the `SQLListener` and set up SQL tab when `SparkSession` is firstly created, which indicates users are going to use SQL functions. But in #19681 , we register the SQL functions during `SparkContext` creation. The same thing should apply to streaming too.

I think we should keep the previous behavior, and only use this new interface for history server.

To reflect this change, I also rename the new interface to `SparkHistoryUIPlugin`

This PR also refines the tests for sql listener.

## How was this patch tested?

existing tests

Author: Wenchen Fan <wenchen@databricks.com>

Closes #19981 from cloud-fan/listener.
2017-12-22 01:08:13 +08:00
Wenchen Fan 8a0ed5a5ee [SPARK-22668][SQL] Ensure no global variables in arguments of method split by CodegenContext.splitExpressions()
## What changes were proposed in this pull request?

Passing global variables to the split method is dangerous, as any mutating to it is ignored and may lead to unexpected behavior.

To prevent this, one approach is to make sure no expression would output global variables: Localizing lifetime of mutable states in expressions.

Another approach is, when calling `ctx.splitExpression`, make sure we don't use children's output as parameter names.

Approach 1 is actually hard to do, as we need to check all expressions and operators that support whole-stage codegen. Approach 2 is easier as the callers of `ctx.splitExpressions` are not too many.

Besides, approach 2 is more flexible, as children's output may be other stuff that can't be parameter name: literal, inlined statement(a + 1), etc.

close https://github.com/apache/spark/pull/19865
close https://github.com/apache/spark/pull/19938

## How was this patch tested?

existing tests

Author: Wenchen Fan <wenchen@databricks.com>

Closes #20021 from cloud-fan/codegen.
2017-12-22 00:21:27 +08:00
Erik LaBianca 4c2efde931 [SPARK-22855][BUILD] Add -no-java-comments to sbt docs/scalacOptions
Prevents Scala 2.12 scaladoc from blowing up attempting to parse java comments.

## What changes were proposed in this pull request?

Adds -no-java-comments to docs/scalacOptions under Scala 2.12. Also
moves scaladoc configs out of the TestSettings and into the standard sharedSettings
section in SparkBuild.scala.

## How was this patch tested?

SBT_OPTS=-Dscala-2.12 sbt
++2.12.4
tags/publishLocal

Author: Erik LaBianca <erik.labianca@gmail.com>

Closes #20042 from easel/scaladoc-212.
2017-12-21 10:08:38 -06:00
Erik LaBianca 0abaf31be7 [SPARK-22852][BUILD] Exclude -Xlint:unchecked from sbt javadoc flags
## What changes were proposed in this pull request?

Moves the -Xlint:unchecked flag in the sbt build configuration from Compile to (Compile, compile) scope, allowing publish and publishLocal commands to work.

## How was this patch tested?

Successfully published the spark-launcher subproject from within sbt successfully, where it fails without this patch.

Author: Erik LaBianca <erik.labianca@gmail.com>

Closes #20040 from easel/javadoc-xlint.
2017-12-21 09:38:21 -06:00
Bryan Cutler 59d52631eb [SPARK-22324][SQL][PYTHON] Upgrade Arrow to 0.8.0
## What changes were proposed in this pull request?

Upgrade Spark to Arrow 0.8.0 for Java and Python.  Also includes an upgrade of Netty to 4.1.17 to resolve dependency requirements.

The highlights that pertain to Spark for the update from Arrow versoin 0.4.1 to 0.8.0 include:

* Java refactoring for more simple API
* Java reduced heap usage and streamlined hot code paths
* Type support for DecimalType, ArrayType
* Improved type casting support in Python
* Simplified type checking in Python

## How was this patch tested?

Existing tests

Author: Bryan Cutler <cutlerb@gmail.com>
Author: Shixiong Zhu <zsxwing@gmail.com>

Closes #19884 from BryanCutler/arrow-upgrade-080-SPARK-22324.
2017-12-21 20:43:56 +09:00
Kazuaki Ishizaki cb9fc8d9b6 [SPARK-22848][SQL] Eliminate mutable state from Stack
## What changes were proposed in this pull request?

This PR eliminates mutable states from the generated code for `Stack`.

## How was this patch tested?

Existing test suites

Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com>

Closes #20035 from kiszk/SPARK-22848.
2017-12-21 14:54:38 +08:00
WeichenXu d3ae3e1e89 [SPARK-19634][SQL][ML][FOLLOW-UP] Improve interface of dataframe vectorized summarizer
## What changes were proposed in this pull request?

Make several improvements in dataframe vectorized summarizer.

1. Make the summarizer return `Vector` type for all metrics (except "count").
It will return "WrappedArray" type before which won't be very convenient.

2. Make `MetricsAggregate` inherit `ImplicitCastInputTypes` trait. So it can check and implicitly cast input values.

3. Add "weight" parameter for all single metric method.

4. Update doc and improve the example code in doc.

5. Simplified test cases.

## How was this patch tested?

Test added and simplified.

Author: WeichenXu <weichen.xu@databricks.com>

Closes #19156 from WeichenXu123/improve_vec_summarizer.
2017-12-20 19:53:35 -08:00
Xingbo Jiang 9c289a5cb4 [SPARK-22387][SQL] Propagate session configs to data source read/write options
## What changes were proposed in this pull request?

Introduce a new interface `SessionConfigSupport` for `DataSourceV2`, it can help to propagate session configs with the specified key-prefix to all data source operations in this session.

## How was this patch tested?

Add new test suite `DataSourceV2UtilsSuite`.

Author: Xingbo Jiang <xingbo.jiang@databricks.com>

Closes #19861 from jiangxb1987/datasource-configs.
2017-12-21 10:02:30 +08:00
Yanbo Liang fb0562f346 [SPARK-22810][ML][PYSPARK] Expose Python API for LinearRegression with huber loss.
## What changes were proposed in this pull request?
Expose Python API for _LinearRegression_ with _huber_ loss.

## How was this patch tested?
Unit test.

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #19994 from yanboliang/spark-22810.
2017-12-20 17:51:42 -08:00
foxish 0114c89d04 [SPARK-22845][SCHEDULER] Modify spark.kubernetes.allocation.batch.delay to take time instead of int
## What changes were proposed in this pull request?

Fixing configuration that was taking an int which should take time. Discussion in https://github.com/apache/spark/pull/19946#discussion_r156682354
Made the granularity milliseconds as opposed to seconds since there's a use-case for sub-second reactions to scale-up rapidly especially with dynamic allocation.

## How was this patch tested?

TODO: manual run of integration tests against this PR.
PTAL

cc/ mccheah liyinan926 kimoonkim vanzin mridulm jiangxb1987 ueshin

Author: foxish <ramanathana@google.com>

Closes #20032 from foxish/fix-time-conf.
2017-12-20 16:14:36 -08:00
wuyi b176014857 [SPARK-22847][CORE] Remove redundant code in AppStatusListener while assigning schedulingPool for stage
## What changes were proposed in this pull request?

In AppStatusListener's onStageSubmitted(event: SparkListenerStageSubmitted) method, there are duplicate code:
```
// schedulingPool was assigned twice with the same code
stage.schedulingPool = Option(event.properties).flatMap { p =>
      Option(p.getProperty("spark.scheduler.pool"))
    }.getOrElse(SparkUI.DEFAULT_POOL_NAME)
...
...
...
stage.schedulingPool = Option(event.properties).flatMap { p =>
      Option(p.getProperty("spark.scheduler.pool"))
    }.getOrElse(SparkUI.DEFAULT_POOL_NAME)

```
But, it does not make any sense to do this and there are no comment to explain for this.

## How was this patch tested?
N/A

Author: wuyi <ngone_5451@163.com>

Closes #20033 from Ngone51/dev-spark-22847.
2017-12-20 14:27:56 -08:00
chetkhatri 792915c844 [SPARK-22830] Scala Coding style has been improved in Spark Examples
## What changes were proposed in this pull request?

* Under Spark Scala Examples: Some of the syntax were written like Java way, It has been re-written as per scala style guide.
* Most of all changes are followed to println() statement.

## How was this patch tested?

Since, All changes proposed are re-writing println statements in scala way, manual run used to test println.

Author: chetkhatri <ckhatrimanjal@gmail.com>

Closes #20016 from chetkhatri/scala-style-spark-examples.
2017-12-20 14:47:49 -06:00
gatorsmile c89b431183 [SPARK-22849] ivy.retrieve pattern should also consider classifier
## What changes were proposed in this pull request?
In the previous PR https://github.com/apache/spark/pull/5755#discussion_r157848354, we dropped `(-[classifier])` from the retrieval pattern. We should add it back; otherwise,
> If this pattern for instance doesn't has the [type] or [classifier] token, Ivy will download the source/javadoc artifacts to the same file as the regular jar.

## How was this patch tested?
The existing tests

Author: gatorsmile <gatorsmile@gmail.com>

Closes #20037 from gatorsmile/addClassifier.
2017-12-20 11:19:57 -08:00
Zheng RuiFeng d762d110d4 [SPARK-22832][ML] BisectingKMeans unpersist unused datasets
## What changes were proposed in this pull request?
unpersist unused datasets

## How was this patch tested?
existing tests and local check in Spark-Shell

Author: Zheng RuiFeng <ruifengz@foxmail.com>

Closes #20017 from zhengruifeng/bkm_unpersist.
2017-12-20 12:50:03 -06:00
Jose Torres 7798c9e6ef [SPARK-22824] Restore old offset for binary compatibility
## What changes were proposed in this pull request?

Some users depend on source compatibility with the org.apache.spark.sql.execution.streaming.Offset class. Although this is not a stable interface, we can keep it in place for now to simplify upgrades to 2.3.

Author: Jose Torres <jose@databricks.com>

Closes #20012 from joseph-torres/binary-compat.
2017-12-20 10:43:10 -08:00
Marcelo Vanzin 7570eab6be [SPARK-22788][STREAMING] Use correct hadoop config for fs append support.
Still look at the old one in case any Spark user is setting it
explicitly, though.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #19983 from vanzin/SPARK-22788.
2017-12-20 11:31:11 -06:00