Commit graph

25534 commits

Author SHA1 Message Date
Sean Owen ee83d09b53 [SPARK-29401][CORE][ML][SQL][GRAPHX][TESTS] Replace calls to .parallelize Arrays of tuples, ambiguous in Scala 2.13, with Seqs of tuples
### What changes were proposed in this pull request?

Invocations like `sc.parallelize(Array((1,2)))` cause a compile error in 2.13, like:
```
[ERROR] [Error] /Users/seanowen/Documents/spark_2.13/core/src/test/scala/org/apache/spark/ShuffleSuite.scala:47: overloaded method value apply with alternatives:
  (x: Unit,xs: Unit*)Array[Unit] <and>
  (x: Double,xs: Double*)Array[Double] <and>
  (x: Float,xs: Float*)Array[Float] <and>
  (x: Long,xs: Long*)Array[Long] <and>
  (x: Int,xs: Int*)Array[Int] <and>
  (x: Char,xs: Char*)Array[Char] <and>
  (x: Short,xs: Short*)Array[Short] <and>
  (x: Byte,xs: Byte*)Array[Byte] <and>
  (x: Boolean,xs: Boolean*)Array[Boolean]
 cannot be applied to ((Int, Int), (Int, Int), (Int, Int), (Int, Int))
```
Using a `Seq` instead appears to resolve it, and is effectively equivalent.

### Why are the changes needed?

To better cross-build for 2.13.

### Does this PR introduce any user-facing change?

None.

### How was this patch tested?

Existing tests.

Closes #26062 from srowen/SPARK-29401.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-10-08 20:22:02 -07:00
Sean Owen 2d871ad0e7 [SPARK-29392][CORE][SQL][STREAMING] Remove symbol literal syntax 'foo, deprecated in Scala 2.13, in favor of Symbol("foo")
### What changes were proposed in this pull request?

Syntax like `'foo` is deprecated in Scala 2.13. Replace usages with `Symbol("foo")`

### Why are the changes needed?

Avoids ~50 deprecation warnings when attempting to build with 2.13.

### Does this PR introduce any user-facing change?

None, should be no functional change at all.

### How was this patch tested?

Existing tests.

Closes #26061 from srowen/SPARK-29392.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-10-08 20:15:37 -07:00
sandeep katta 69b0cc1962 [SPARK-28797][DOC] Document DROP FUNCTION statement in SQL Reference
### What changes were proposed in this pull request?
Add DROP FUNCTION sql description in SQL reference

### Why are the changes needed?
Currently from spark there is no complete sql guide is present, so it is better to document all the sql commands, this jira is sub part of this task.

### Does this PR introduce any user-facing change?
Yes before user cannot find any reference for drop function command in the spark docs.

After Fix:
![image](https://user-images.githubusercontent.com/35216143/66134570-240cd300-e616-11e9-9c78-259c0d355378.png)

![image](https://user-images.githubusercontent.com/35216143/65397825-d059e880-ddd0-11e9-8bd3-a65ccae56063.png)

![image](https://user-images.githubusercontent.com/35216143/66404731-9f032e80-ea06-11e9-8fef-1e266efa4c66.png)

### How was this patch tested?
tested with jekyll build

Closes #25553 from sandeep-katta/28797.

Authored-by: sandeep katta <sandeep.katta2007@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-10-08 19:47:39 -05:00
gwang3 b3eba29493 [SPARK-29189][FOLLOW-UP][SQL] Beautify config name
### What changes were proposed in this pull request?
Beautify comment

### Why are the changes needed?
The config name now is pretty weird.

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
No test.

Closes #26054 from wangshisan/SPARK-29189.

Authored-by: gwang3 <gwang3@ebay.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-10-08 15:44:42 -07:00
Imran Rashid 0da667d314 [SPARK-28917][CORE] Synchronize access to RDD mutable state
RDD dependencies and partitions can be simultaneously
accessed and mutated by user threads and spark's scheduler threads, so
access must be thread-safe.  In particular, as partitions and
dependencies are lazily-initialized, before this change they could get
initialized multiple times, which would lead to the scheduler having an
inconsistent view of the pendings stages and get stuck.

Tested with existing unit tests.

Closes #25951 from squito/SPARK-28917.

Authored-by: Imran Rashid <irashid@cloudera.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-10-08 11:35:54 -07:00
Guilherme de360e96d7 [SPARK-29336][SQL] Fix the implementation of QuantileSummaries.merge (guarantee that the relativeError will be respected)
### What changes were proposed in this pull request?

Reimplement `org.apache.spark.sql.catalyst.util.QuantileSummaries#merge` and add a test-case showing the previous bug.

### Why are the changes needed?

The original Greenwald-Khanna paper, from which the algorithm behind `approxQuantile` was taken, does not cover how to merge the result of multiple parallel QuantileSummaries. The current implementation violates some invariants and therefore the effective error can be larger than the specified.

### Does this PR introduce any user-facing change?

Yes, for same cases, the results from `approxQuantile` (`percentile_approx` in SQL) will now be within the expected error margin. For example:

```scala
var values = (1 to 100).toArray
val all_quantiles = values.indices.map(i => (i+1).toDouble / values.length).toArray
for (n <- 0 until 5) {
  var df = spark.sparkContext.makeRDD(values).toDF("value").repartition(5)
  val all_answers = df.stat.approxQuantile("value", all_quantiles, 0.1)
  val all_answered_ranks = all_answers.map(ans => values.indexOf(ans)).toArray
  val error = all_answered_ranks.zipWithIndex.map({ case (answer, expected) => Math.abs(expected - answer) }).toArray
  val max_error = error.max
  print(max_error + "\n")
}
```

In the current build it returns:

```
16
12
10
11
17
```

I couldn't run the code with this patch applied to double check the implementation. Can someone please confirm it now outputs at most `10`, please?

### How was this patch tested?

A new unit test was added to uncover the previous bug.

Closes #26029 from sitegui/SPARK-29336.

Authored-by: Guilherme <sitegui@sitegui.com.br>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-10-08 08:11:10 -05:00
Maxim Gekk 4e6d31f570 [SPARK-24640][SQL] Return NULL from size(NULL) by default
### What changes were proposed in this pull request?
Set the default value of the `spark.sql.legacy.sizeOfNull` config to `false`. That changes behavior of the `size()` function for `NULL`. The function will return `NULL` for `NULL` instead of `-1`.

### Why are the changes needed?
There is the agreement in the PR https://github.com/apache/spark/pull/21598#issuecomment-399695523 to change behavior in Spark 3.0.

### Does this PR introduce any user-facing change?
Yes.
Before:
```sql
spark-sql> select size(NULL);
-1
```
After:
```sql
spark-sql> select size(NULL);
NULL
```

### How was this patch tested?
By the `check outputs of expression examples` test in `SQLQuerySuite` which runs expression examples.

Closes #26051 from MaxGekk/sizeof-null-returns-null.

Authored-by: Maxim Gekk <max.gekk@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2019-10-08 20:57:10 +09:00
Dilip Biswal ef1e8495ba [SPARK-29366][SQL] Subqueries created for DPP are not printed in EXPLAIN FORMATTED
### What changes were proposed in this pull request?
The subquery expressions introduced by DPP are not printed in the newer explain command.
This PR fixes the code that computes the list of subqueries in the plan.

**SQL**
df1 and df2 are partitioned on k.
```
SELECT df1.id, df2.k
FROM df1 JOIN df2 ON df1.k = df2.k AND df2.id < 2
```

**Before**
```
|== Physical Plan ==
* Project (9)
+- * BroadcastHashJoin Inner BuildRight (8)
   :- * ColumnarToRow (2)
   :  +- Scan parquet default.df1 (1)
   +- BroadcastExchange (7)
      +- * Project (6)
         +- * Filter (5)
            +- * ColumnarToRow (4)
               +- Scan parquet default.df2 (3)

(1) Scan parquet default.df1
Output: [id#19L, k#20L]

(2) ColumnarToRow [codegen id : 2]
Input: [id#19L, k#20L]

(3) Scan parquet default.df2
Output: [id#21L, k#22L]

(4) ColumnarToRow [codegen id : 1]
Input: [id#21L, k#22L]

(5) Filter [codegen id : 1]
Input     : [id#21L, k#22L]
Condition : (isnotnull(id#21L) AND (id#21L < 2))

(6) Project [codegen id : 1]
Output    : [k#22L]
Input     : [id#21L, k#22L]

(7) BroadcastExchange
Input: [k#22L]

(8) BroadcastHashJoin [codegen id : 2]
Left keys: List(k#20L)
Right keys: List(k#22L)
Join condition: None

(9) Project [codegen id : 2]
Output    : [id#19L, k#22L]
Input     : [id#19L, k#20L, k#22L]
```
**After**
```
|== Physical Plan ==
* Project (9)
+- * BroadcastHashJoin Inner BuildRight (8)
   :- * ColumnarToRow (2)
   :  +- Scan parquet default.df1 (1)
   +- BroadcastExchange (7)
      +- * Project (6)
         +- * Filter (5)
            +- * ColumnarToRow (4)
               +- Scan parquet default.df2 (3)

(1) Scan parquet default.df1
Output: [id#19L, k#20L]

(2) ColumnarToRow [codegen id : 2]
Input: [id#19L, k#20L]

(3) Scan parquet default.df2
Output: [id#21L, k#22L]

(4) ColumnarToRow [codegen id : 1]
Input: [id#21L, k#22L]

(5) Filter [codegen id : 1]
Input     : [id#21L, k#22L]
Condition : (isnotnull(id#21L) AND (id#21L < 2))

(6) Project [codegen id : 1]
Output    : [k#22L]
Input     : [id#21L, k#22L]

(7) BroadcastExchange
Input: [k#22L]

(8) BroadcastHashJoin [codegen id : 2]
Left keys: List(k#20L)
Right keys: List(k#22L)
Join condition: None

(9) Project [codegen id : 2]
Output    : [id#19L, k#22L]
Input     : [id#19L, k#20L, k#22L]

===== Subqueries =====

Subquery:1 Hosting operator id = 1 Hosting Expression = k#20L IN subquery25
* HashAggregate (16)
+- Exchange (15)
   +- * HashAggregate (14)
      +- * Project (13)
         +- * Filter (12)
            +- * ColumnarToRow (11)
               +- Scan parquet default.df2 (10)

(10) Scan parquet default.df2
Output: [id#21L, k#22L]

(11) ColumnarToRow [codegen id : 1]
Input: [id#21L, k#22L]

(12) Filter [codegen id : 1]
Input     : [id#21L, k#22L]
Condition : (isnotnull(id#21L) AND (id#21L < 2))

(13) Project [codegen id : 1]
Output    : [k#22L]
Input     : [id#21L, k#22L]

(14) HashAggregate [codegen id : 1]
Input: [k#22L]

(15) Exchange
Input: [k#22L]

(16) HashAggregate [codegen id : 2]
Input: [k#22L]
```
### Why are the changes needed?
Without the fix, the subqueries are not printed in the explain plan.

### Does this PR introduce any user-facing change?
Yes. the explain output will be different.

### How was this patch tested?
Added a test case in ExplainSuite.

Closes #26039 from dilipbiswal/explain_subquery_issue.

Authored-by: Dilip Biswal <dkbiswal@gmail.com>
Signed-off-by: Xiao Li <gatorsmile@gmail.com>
2019-10-07 23:39:05 -07:00
Wenchen Fan 948a6e80fe [SPARK-28892][SQL][FOLLOWUP] add resolved logical plan for UPDATE TABLE
### What changes were proposed in this pull request?

Add back the resolved logical plan for UPDATE TABLE. It was in https://github.com/apache/spark/pull/25626 before but was removed later.

### Why are the changes needed?

In https://github.com/apache/spark/pull/25626 , we decided to not add the update API in DS v2, but we still want to implement UPDATE for builtin source like JDBC. We should at least add the resolved logical plan.

### Does this PR introduce any user-facing change?

no, UPDATE is still not supported yet.

### How was this patch tested?

new tests.

Closes #26025 from cloud-fan/update.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Xiao Li <gatorsmile@gmail.com>
2019-10-07 23:36:26 -07:00
Huaxin Gao ffddfc8584 [SPARK-29269][PYTHON][ML] Pyspark ALSModel support getters/setters
### What changes were proposed in this pull request?
Add getters/setters in Pyspark ALSModel.

### Why are the changes needed?
To keep parity between python and scala.

### Does this PR introduce any user-facing change?
Yes.
add the following getters/setters to ALSModel
```
get/setUserCol
get/setItemCol
get/setColdStartStrategy
get/setPredictionCol
```

### How was this patch tested?
add doctest

Closes #25947 from huaxingao/spark-29269.

Authored-by: Huaxin Gao <huaxing@us.ibm.com>
Signed-off-by: zhengruifeng <ruifengz@foxmail.com>
2019-10-08 14:05:09 +08:00
gengjiaan 7d80aa553a [MINOR][BUILD] Fix an incorrect path in license file
### What changes were proposed in this pull request?
The `LICENSE` file exists a minor issue has an incorrect path.
This PR will fix it.

### Why are the changes needed?
This is a minor bug.

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
Exists UT.

Closes #26050 from beliefer/resolve-minor-license-issue.

Authored-by: gengjiaan <gengjiaan@360.cn>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2019-10-08 14:33:03 +09:00
Dongjoon Hyun cb501771fa [SPARK-25668][SQL][TESTS] Refactor TPCDSQueryBenchmark to use main method
### What changes were proposed in this pull request?

This PR aims the followings.
- Refactor `TPCDSQueryBenchmark` to use main method to improve the usability.
- Reduce the number of iteration from 5 to 2 because it takes too long. (2 is okay because we have `Stdev` field now. If there is an irregular run, we can notice easily with that).
- Generate one result file for TPCDS scale factor 1. (Note that this test suite can be used for the other scale factors, too.)
  - AWS EC2 `r3.xlarge` with `ami-06f2f779464715dc5 (ubuntu-bionic-18.04-amd64-server-20190722.1)` is used.

This PR adds a JDK8 result based on the TPCDS ScaleFactor 1G data generated by the following.
```
# `spark-tpcds-datagen` needs this. (JDK8)
$ git clone https://github.com/apache/spark.git -b branch-2.4 --depth 1 spark-2.4
$ export SPARK_HOME=$PWD
$ ./build/mvn clean package -DskipTests

# Generate data. (JDK8)
$ git clone gitgithub.com:maropu/spark-tpcds-datagen.git
$ cd spark-tpcds-datagen/
$ build/mvn clean package
$ mkdir -p /data/tpcds
$ ./bin/dsdgen --output-location /data/tpcds/s1  // This need `Spark 2.4`
```

### Why are the changes needed?

Although the generated TPCDS data is random, we can keep the record.

### Does this PR introduce any user-facing change?

No. (This is dev-only test benchmark).

### How was this patch tested?

Manually run the benchmark. Please note that you need to have TPCDS data.
```
SPARK_GENERATE_BENCHMARK_FILES=1 build/sbt "sql/test:runMain org.apache.spark.sql.execution.benchmark.TPCDSQueryBenchmark --data-location /data/tpcds/s1"
```

Closes #26049 from dongjoon-hyun/SPARK-25668.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2019-10-08 13:33:42 +09:00
Xingbo Jiang 56a3bebb1b [SPARK-27492][DOC][FOLLOWUP] Update resource scheduling user docs
### What changes were proposed in this pull request?

Fix a config name typo from the resource scheduling user docs. In case users might get confused with the wrong config name, we'd better fix this typo.

### How was this patch tested?

Document change, no need to run test.

Closes #26047 from jiangxb1987/doc.

Authored-by: Xingbo Jiang <xingbo.jiang@databricks.com>
Signed-off-by: Xingbo Jiang <xingbo.jiang@databricks.com>
2019-10-07 16:21:39 -07:00
Marcelo Vanzin d2f21b0199 [SPARK-27468][CORE] Track correct storage level of RDDs and partitions
Previously, the RDD level would change depending on the status reported
by executors for the block they were storing, and individual blocks would
reflect that. That is wrong because different blocks may be stored differently
in different executors.

So now the RDD tracks the user-provided storage level, while the individual
partitions reflect the current storage level of that particular block,
including the current number of replicas.

Closes #25779 from vanzin/SPARK-27468.

Authored-by: Marcelo Vanzin <vanzin@cloudera.com>
Signed-off-by: Imran Rashid <irashid@cloudera.com>
2019-10-07 16:07:00 -05:00
gwang3 64fe82b519 [SPARK-29189][SQL] Add an option to ignore block locations when listing file
### What changes were proposed in this pull request?
In our PROD env, we have a pure Spark cluster, I think this is also pretty common, where computation is separated from storage layer. In such deploy mode, data locality is never reachable.
And there are some configurations in Spark scheduler to reduce waiting time for data locality(e.g. "spark.locality.wait"). While, problem is that, in listing file phase, the location informations of all the files, with all the blocks inside each file, are all fetched from the distributed file system. Actually, in a PROD environment, a table can be so huge that even fetching all these location informations need take tens of seconds.
To improve such scenario, Spark need provide an option, where data locality can be totally ignored, all we need in the listing file phase are the files locations, without any block location informations.

### Why are the changes needed?
And we made a benchmark in our PROD env, after ignore the block locations, we got a pretty huge improvement.

Table Size | Total File Number | Total Block Number | List File Duration(With Block Location) | List File Duration(Without Block Location)
-- | -- | -- | -- | --
22.6T | 30000 | 120000 | 16.841s | 1.730s
28.8 T | 42001 | 148964 | 10.099s | 2.858s
3.4 T | 20000 | 20000 | 5.833s | 4.881s

### Does this PR introduce any user-facing change?
No.

### How was this patch tested?
Via ut.

Closes #25869 from wangshisan/SPARK-29189.

Authored-by: gwang3 <gwang3@ebay.com>
Signed-off-by: Imran Rashid <irashid@cloudera.com>
2019-10-07 14:52:55 -05:00
Huaxin Gao f0534fb9e5 [SPARK-28816][DOC][SQL] Document ADD JAR statement in SQL Reference
### What changes were proposed in this pull request?
document ADD JAR statement in SQL Reference

### Why are the changes needed?
To complete SQL reference

### Does this PR introduce any user-facing change?
yes

after change:
![image](https://user-images.githubusercontent.com/13592258/66337691-80147780-e8f4-11e9-9d7c-7c1e7ff5379a.png)

![image](https://user-images.githubusercontent.com/13592258/66337704-860a5880-e8f4-11e9-93fa-789695de29d7.png)

![image](https://user-images.githubusercontent.com/13592258/66337721-8b67a300-e8f4-11e9-9056-998187a16c7b.png)

![image](https://user-images.githubusercontent.com/13592258/66337736-928eb100-e8f4-11e9-91c5-d8935a7b93b5.png)

### How was this patch tested?
Tested using jykyll build --serve

Closes #25895 from huaxingao/spark_28816.

Authored-by: Huaxin Gao <huaxing@us.ibm.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-10-07 13:39:03 -05:00
Maxim Gekk b10344956d [SPARK-29342][SQL] Make casting of string values to intervals case insensitive
### What changes were proposed in this pull request?

In the PR, I propose to pass the `Pattern.CASE_INSENSITIVE` flag while compiling interval patterns in `CalendarInterval`. This makes casting string values to intervals case insensitive and tolerant to case of the `interval`, `year(s)`, `month(s)`, `week(s)`, `day(s)`, `hour(s)`, `minute(s)`, `second(s)`, `millisecond(s)` and `microsecond(s)`.

### Why are the changes needed?
There are at least 2 reasons:
- To maintain feature parity with PostgreSQL which is not sensitive to case:
```sql
 # select cast('10 Days' as INTERVAL);
 interval
----------
 10 days
(1 row)
```
- Spark is tolerant to case of interval literals. Case insensitivity in casting should be convenient for Spark users.
```sql
spark-sql> SELECT INTERVAL 1 YEAR 1 WEEK;
interval 1 years 1 weeks
```

### Does this PR introduce any user-facing change?
Yes, current implementation produces `NULL` for `interval`, `year`, ... `microsecond` that are not in lower case.
Before:
```sql
spark-sql> SELECT CAST('INTERVAL 10 DAYS' as INTERVAL);
NULL
```
After:
```sql
spark-sql> SELECT CAST('INTERVAL 10 DAYS' as INTERVAL);
interval 1 weeks 3 days
```

### How was this patch tested?
- by new tests in `CalendarIntervalSuite.java`
- new test in `CastSuite`

Closes #26010 from MaxGekk/interval-case-insensitive.

Authored-by: Maxim Gekk <max.gekk@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-10-07 09:33:01 -07:00
Huaxin Gao 2399134456 [SPARK-29143][PYTHON][ML] Pyspark feature models support column setters/getters
### What changes were proposed in this pull request?
add column setters/getters support in Pyspark feature models

### Why are the changes needed?
keep parity between Pyspark and Scala

### Does this PR introduce any user-facing change?
Yes.
After the change, Pyspark feature models have column setters/getters support.

### How was this patch tested?
Add some doctests

Closes #25908 from huaxingao/spark-29143.

Authored-by: Huaxin Gao <huaxing@us.ibm.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-10-07 10:55:48 -05:00
Huaxin Gao bd213a0850 [SPARK-29360][PYTHON][ML] PySpark FPGrowthModel supports getter/setter
### What changes were proposed in this pull request?

### Why are the changes needed?
Keep parity between Scala and Python

### Does this PR introduce any user-facing change?
add the following getters/setter to FPGrowthModel
```
getMinSupport
getNumPartitions
getMinConfidence
getItemsCol
getPredictionCol
setItemsCol
setMinConfidence
setPredictionCol
```
add following getters/setters to PrefixSpan
```
set/getMinSupport
set/getMaxPatternLength
set/getMaxLocalProjDBSize
set/getSequenceCol
```

### How was this patch tested?
add doctest

Closes #26035 from huaxingao/spark-29360.

Authored-by: Huaxin Gao <huaxing@us.ibm.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-10-07 10:53:59 -05:00
Liang-Chi Hsieh ea8b5df474 [SPARK-28938][K8S] Move to supported OpenJDK docker image for Kubernetes
### What changes were proposed in this pull request?

The current docker image used by Kubernetes is `openjdk:8-alpine`. It was not supported and  was removed with the commit 3eb0351b20 (diff-f95ffa3d1377774732c33f7b8368e099).

This PR proposes to move to a supported docker image.

### Why are the changes needed?

I think there are at least two reasons:

1. According to the commit, Alpine/musl is not officially supported by the OpenJDK project.
2. As no more OpenJDK 8 Alpine images, new JDK updates including security fixes
, are not applied to it. See below:

```
docker run -it --rm openjdk:8-alpine java -version
openjdk version "1.8.0_212"
OpenJDK Runtime Environment (IcedTea 3.12.0) (Alpine 8.212.04-r0)
OpenJDK 64-Bit Server VM (build 25.212-b04, mixed mode)
```
```
docker run -it --rm openjdk:8-jdk-slim java -version
openjdk version "1.8.0_222"
OpenJDK Runtime Environment (build 1.8.0_222-b10)
OpenJDK 64-Bit Server VM (build 25.222-b10, mixed mode)
```

### Does this PR introduce any user-facing change?

Yes. This changes the base docker image of Spark.

### How was this patch tested?

Existing tests.

Closes #26037 from viirya/SPARK-28938.

Authored-by: Liang-Chi Hsieh <viirya@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-10-07 08:52:35 -07:00
Maxim Gekk 18b7ad2fc5 [SPARK-29328][SQL] Fix calculation of mean seconds per month
### What changes were proposed in this pull request?
I introduced new constants `SECONDS_PER_MONTH` and `MILLIS_PER_MONTH`, and reused it in calculations of seconds/milliseconds per month. `SECONDS_PER_MONTH` is 2629746 because the average year of the Gregorian calendar is 365.2425 days long or 60 * 60 * 24 * 365.2425 = 31556952.0 = 12 * 2629746 seconds per year.

### Why are the changes needed?
Spark uses the proleptic Gregorian calendar (see https://issues.apache.org/jira/browse/SPARK-26651) in which the average year is 365.2425 days (see https://en.wikipedia.org/wiki/Gregorian_calendar) but existing implementation assumes 31 days per months or 12 * 31 = 372 days. That's far away from the the truth.

### Does this PR introduce any user-facing change?
 Yes, the changes affect at least 3 methods in `GroupStateImpl`, `EventTimeWatermark` and `MonthsBetween`. For example, the `month_between()` function will return different result in some cases.

Before:
```sql
spark-sql> select months_between('2019-09-15', '1970-01-01');
596.4516129
```
After:
```sql
spark-sql> select months_between('2019-09-15', '1970-01-01');
596.45996838
```

### How was this patch tested?
By existing test suite `DateTimeUtilsSuite`, `DateFunctionsSuite` and `DateExpressionsSuite`.

Closes #25998 from MaxGekk/days-in-year.

Authored-by: Maxim Gekk <max.gekk@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-10-07 08:47:46 -05:00
Maxim Gekk 932e2619ce [SPARK-29365][SQL] Support dates and timestamps subtraction
### What changes were proposed in this pull request?
Added new rules to `TypeCoercion.DateTimeOperations` for the `Subtract` expression which is replaced by existing `TimestampDiff` expression if one of its parameter has the `DATE` type and another one is the `TIMESTAMP` type. The date argument is casted to timestamp.

### Why are the changes needed?
- To maintain feature parity with PostgreSQL which supports subtraction of a date from a timestamp and a timestamp from a date:
```sql
maxim=# select timestamp'now' - date'epoch';
          ?column?
----------------------------
 18175 days 21:07:33.412875
(1 row)

maxim=# select date'2020-01-01' - timestamp'now';
        ?column?
-------------------------
 86 days 02:52:00.945296
(1 row)
```
- To conform to the SQL standard which defines datetime subtraction as an interval.

### Does this PR introduce any user-facing change?
Yes, currently the queries bellow fails with the error:
```sql
spark-sql> select timestamp'now' - date'2019-10-01';
Error in query: cannot resolve '(TIMESTAMP('2019-10-06 21:05:07.234') - DATE '2019-10-01')' due to data type mismatch: differing types in '(TIMESTAMP('2019-10-06 21:05:07.234') - DATE '2019-10-01')' (timestamp and date).; line 1 pos 7;
'Project [unresolvedalias((1570385107234000 - 18170), None)]
+- OneRowRelation
```
after the changes:
```sql
spark-sql> select timestamp'now' - date'2019-10-01';
interval 5 days 21 hours 4 minutes 55 seconds 878 milliseconds
```

### How was this patch tested?
- Add new cases to the `rule for date/timestamp operations` test in `TypeCoercionSuite`
- by 2 new test in `datetime.sql`

Closes #26036 from MaxGekk/date-timestamp-subtract.

Authored-by: Maxim Gekk <max.gekk@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2019-10-07 16:47:00 +09:00
Huaxin Gao 5a512e86e9 [SPARK-28800][DOC][SQL] Document REPAIR TABLE statement in SQL Reference
### What changes were proposed in this pull request?
Document REPAIR TABLE statement in SQL Reference.

### Why are the changes needed?
To complete SQL reference.

### Does this PR introduce any user-facing change?
Yes.

After the change, we will have the following
![image](https://user-images.githubusercontent.com/13592258/66271480-461f7480-e813-11e9-9b40-cbffec1221ae.png)

![image](https://user-images.githubusercontent.com/13592258/66261968-4fb1c980-e78c-11e9-9db0-fcd6f458fd39.png)

### How was this patch tested?
Tested using jykyll build --serve

Closes #25884 from huaxingao/spark-28800.

Authored-by: Huaxin Gao <huaxing@us.ibm.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-10-06 11:19:13 -05:00
maruilei 77510c602a [SPARK-29233][K8S] Add regex expression checks for executorEnv…
### What changes were proposed in this pull request?

In kubernetes, there are some naming regular expression requirements and restrictions on environment variable names, such as:

- In kubernetes version release-1.7 and earlier, the naming rules of pod environment variable names should meet the requirements of regular expressions: [[A-Za-z_] [A-Za-z0-9_]*](https://github.com/kubernetes/kubernetes/blob/release-1.7/staging/src/k8s.io/apimachinery/pkg/util/validation/validation.go#L169)
- In kubernetes version release-1.8 and later, the naming rules of pod environment variable names should meet the requirements of regular expressions: [[-. _ A-ZA-Z][-. _ A-ZA-Z0-9].*](https://github.com/kubernetes/kubernetes/blob/release-1.8/staging/src/k8s.io/apimachinery/pkg/util/validation/validation.go#L305)

However, in spark on k8s mode, spark should add restrictions on environmental variable names when creating executorEnv.

In addition, we need to use regular expressions adapted to the high version of k8s to increase the restrictions on the names of environmental variables.

Otherwise, the pod will not be created properly and the spark application will be suspended.

To solve the problem above, a regular validation to executorEnv is added and committed. 

### Why are the changes needed?

If no validation rules are added, the environment variable names that don't meet the requirements will cause the pod to not be created properly and the application will be suspended.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Add unit tests and manually run.

Closes #25920 from merrily01/SPARK-29233.

Authored-by: maruilei <maruilei@jd.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-10-06 09:41:11 -05:00
zero323 7c5db4515e [SPARK-29363][MLLIB] Make o.a.s.regression.Regressor public
### What changes were proposed in this pull request?

- Removal of `private[ml]` modifier from `Regressor`.
- Marking `Regressor` as  `DeveloperApi`.

### Why are the changes needed?
Consistency with the rest of ML API as described in [the corresponding JIRA ticket](https://issues.apache.org/jira/browse/SPARK-29363).

### Does this PR introduce any user-facing change?
Yes, as described above.

### How was this patch tested?
Existing tests.

Closes #26033 from zero323/SPARK-29363.

Authored-by: zero323 <mszymkiewicz@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-10-05 18:16:28 -07:00
Xingbo Jiang 80afc79d89 [SPARK-29263][SCHEDULER][FOLLOWUP][TEST] Update FakeTask.createTaskSet() method
### What changes were proposed in this pull request?

Update `FakeTask.createTaskSet()` method to make the generated TaskSet makes use of the `priority` param.

### How was this patch tested?

All the places referring to this method pass `priority = 0`, but we still need to fix this to avoid future test failure.

Closes #26030 from jiangxb1987/SPARK-292630-FOLLOWUP.

Authored-by: Xingbo Jiang <xingbo.jiang@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-10-05 14:44:58 -07:00
zero323 8556710409 [SPARK-28985][PYTHON][ML][FOLLOW-UP] Add _IsotonicRegressionBase
### What changes were proposed in this pull request?

Adds

```python
class _IsotonicRegressionBase(HasFeaturesCol, HasLabelCol, HasPredictionCol, HasWeightCol): ...
```

with related `Params` and uses it to replace `JavaPredictor` and `HasWeightCol` in `IsotonicRegression` base classes and `JavaPredictionModel,` in `IsotonicRegressionModel` base classes.

### Why are the changes needed?

Previous work (#25776) on [SPARK-28985](https://issues.apache.org/jira/browse/SPARK-28985) replaced `JavaEstimator`, `HasFeaturesCol`, `HasLabelCol`, `HasPredictionCol` in `IsotonicRegression` and `JavaModel` in `IsotonicRegressionModel` with newly added `JavaPredictor`:

e97b55d322/python/pyspark/ml/wrapper.py (L377)

and `JavaPredictionModel`

e97b55d322/python/pyspark/ml/wrapper.py (L405)

respectively.

This however is inconsistent with Scala counterpart where both  classes extend private `IsotonicRegressionBase`

3cb1b57809/mllib/src/main/scala/org/apache/spark/ml/regression/IsotonicRegression.scala (L42-L43)

This preserves some of the existing inconsistencies (`model` as defined in [the official example](https://github.com/apache/spark/blob/master/examples/src/main/python/ml/isotonic_regression_example.py)), i.e.

```python
from pyspark.ml.regression impor IsotonicRegressionMode
from pyspark.ml.param.shared import HasWeightCol

issubclass(IsotonicRegressionModel, HasWeightCol)
# False

hasattr(model, "weightCol")
# True
```

as well as introduces a bug, by adding unsupported `predict` method:

```python
import inspect

hasattr(model, "predict")
# True

inspect.getfullargspec(IsotonicRegressionModel.predict)
# FullArgSpec(args=['self', 'value'], varargs=None, varkw=None, defaults=None, kwonlyargs=[], kwonlydefaults=None, annotations={})

IsotonicRegressionModel.predict.__doc__
# Predict label for the given features.\n\n        .. versionadded:: 3.0.0'

model.predict(dataset.first().features)

# Py4JError: An error occurred while calling o49.predict. Trace:
# py4j.Py4JException: Method predict([class org.apache.spark.ml.linalg.SparseVector]) does not exist
# ...

```

Furthermore existing implementation can cause further problems in the future, if `Predictor` / `PredictionModel` API changes.

### Does this PR introduce any user-facing change?

Yes. It:

- Removes invalid `IsotonicRegressionModel.predict` method.
- Adds `HasWeightColumn` to `IsotonicRegressionModel`.

however the faulty implementation hasn't been released yet, and proposed additions have negligible potential for breaking existing code (and none, compared to changes already made in #25776).

### How was this patch tested?

- Existing unit tests.
- Manual testing.

CC huaxingao, zhengruifeng

Closes #26023 from zero323/SPARK-28985-FOLLOW-UP-isotonic-regression.

Authored-by: zero323 <mszymkiewicz@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-10-04 18:06:10 -05:00
zero323 df22535bbd [SPARK-28985][PYTHON][ML][FOLLOW-UP] Add _AFTSurvivalRegressionParams
### What changes were proposed in this pull request?

Adds

```python
_AFTSurvivalRegressionParams(HasFeaturesCol, HasLabelCol, HasPredictionCol,
                                   HasMaxIter, HasTol, HasFitIntercept,
                                   HasAggregationDepth): ...
```

with related Params and uses it to replace `HasFitIntercept`, `HasMaxIter`, `HasTol` and  `HasAggregationDepth` in `AFTSurvivalRegression` base classes and `JavaPredictionModel,` in `AFTSurvivalRegressionModel` base classes.

### Why are the changes needed?

Previous work (#25776) on [SPARK-28985](https://issues.apache.org/jira/browse/SPARK-28985) replaced `JavaEstimator`, `HasFeaturesCol`, `HasLabelCol`, `HasPredictionCol` in `AFTSurvivalRegression` and  `JavaModel` in `AFTSurvivalRegressionModel` with newly added `JavaPredictor`:

e97b55d322/python/pyspark/ml/wrapper.py (L377)

and `JavaPredictionModel`

e97b55d322/python/pyspark/ml/wrapper.py (L405)

respectively.

This however is inconsistent with Scala counterpart where both classes extend private `AFTSurvivalRegressionBase`

eb037a8180/mllib/src/main/scala/org/apache/spark/ml/regression/AFTSurvivalRegression.scala (L48-L50)

This preserves some of the existing inconsistencies (variables as defined in [the official example](https://github.com/apache/spark/blob/master/examples/src/main/python/ml/aft_survival_regression.p))

```
from pyspark.ml.regression import AFTSurvivalRegression, AFTSurvivalRegressionModel
from pyspark.ml.param.shared import HasMaxIter, HasTol, HasFitIntercept, HasAggregationDepth
from pyspark.ml.param import Param

issubclass(AFTSurvivalRegressionModel, HasMaxIter)
# False
hasattr(model, "maxIter")  and isinstance(model.maxIter, Param)
# True

issubclass(AFTSurvivalRegressionModel, HasTol)
# False
hasattr(model, "tol")  and isinstance(model.tol, Param)
# True
```

and can cause problems in the future, if Predictor / PredictionModel API changes (unlike [`IsotonicRegression`](https://github.com/apache/spark/pull/26023), current implementation is technically speaking correct, though incomplete).

### Does this PR introduce any user-facing change?

Yes, it adds a number of base classes to `AFTSurvivalRegressionModel`. These change purely additive and have negligible potential for breaking existing code (and none, compared to changes already made in #25776). Additionally affected API hasn't been released in the current form yet.

### How was this patch tested?

- Existing unit tests.
- Manual testing.

CC huaxingao, zhengruifeng

Closes #26024 from zero323/SPARK-28985-FOLLOW-UP-aftsurival-regression.

Authored-by: zero323 <mszymkiewicz@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-10-04 18:04:21 -05:00
Huaxin Gao 228b1ea96c [SPARK-28813][DOC][SQL] Document SHOW CREATE TABLE in SQL Reference
### What changes were proposed in this pull request?
Document SHOW CREATE TABLE statement in SQL Reference

### Why are the changes needed?
To complete the SQL reference.

### Does this PR introduce any user-facing change?
Yes.

after the change:

![image](https://user-images.githubusercontent.com/13592258/66239427-b2349800-e6ae-11e9-8f78-f9e8ed85ab3b.png)

### How was this patch tested?
Tested using jykyll build --serve

Closes #25885 from huaxingao/spark-28813.

Authored-by: Huaxin Gao <huaxing@us.ibm.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-10-04 16:16:00 -05:00
Yuanjian Li 130e9ae5dc [SPARK-29357][SQL][TESTS] Fix flaky test by changing to use AtomicLong
### What changes were proposed in this pull request?
Change to use AtomicLong instead of a var in the test.

### Why are the changes needed?
Fix flaky test.

### Does this PR introduce any user-facing change?
No.

### How was this patch tested?
Existing UT.

Closes #26020 from xuanyuanking/SPARK-25159.

Authored-by: Yuanjian Li <xyliyuanjian@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-10-04 10:11:31 -07:00
HyukjinKwon 20ee2f5dcb [SPARK-29286][PYTHON][TESTS] Uses UTF-8 with 'replace' on errors at Python testing script
### What changes were proposed in this pull request?

This PR proposes to let Python 2 uses UTF-8, instead of ASCII, with permissively replacing non-UDF-8 unicodes into unicode points in Python testing script.

### Why are the changes needed?

When Python 2 is used to run the Python testing script, with `decode(encoding='ascii')`, it fails whenever non-ascii codes are printed out.

### Does this PR introduce any user-facing change?

To dev, it will enable to support to print out non-ASCII characters.

### How was this patch tested?

Jenkins will test it for our existing test codes. Also, manually tested with UTF-8 output.

Closes #26021 from HyukjinKwon/SPARK-29286.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-10-04 10:04:28 -07:00
Maxim Gekk eecef75350 [SPARK-29355][SQL] Support timestamps subtraction
### What changes were proposed in this pull request?

Added new expression `TimestampDiff` for timestamp subtractions. It accepts 2 timestamp expressions and returns another one of the `CalendarIntervalType`. While creating an instance of `CalendarInterval`, it initializes only the microsecond field by difference of the given timestamps in microseconds, and set the `months` field to zero. Also I added an rule for conversion `Subtract` to `TimestampDiff`, and enabled already ported test queries in `postgreSQL/timestamp.sql`.

### Why are the changes needed?
To maintain feature parity with PostgreSQL which allows to get timestamp difference:
```sql
# select timestamp'today' - timestamp'yesterday';
 ?column?
----------
 1 day
(1 row)
```

### Does this PR introduce any user-facing change?
Yes, previously users got the following error from timestamp subtraction:
```sql
spark-sql> select timestamp'today' - timestamp'yesterday';
Error in query: cannot resolve '(TIMESTAMP('2019-10-04 00:00:00') - TIMESTAMP('2019-10-03 00:00:00'))' due to data type mismatch: '(TIMESTAMP('2019-10-04 00:00:00') - TIMESTAMP('2019-10-03 00:00:00'))' requires (numeric or interval) type, not timestamp; line 1 pos 7;
'Project [unresolvedalias((1570136400000000 - 1570050000000000), None)]
+- OneRowRelation
```
after the changes they should get an interval:
```sql
spark-sql> select timestamp'today' - timestamp'yesterday';
interval 1 days
```

### How was this patch tested?
- Added tests for `TimestampDiff` to `DateExpressionsSuite`
- By new test in `TypeCoercionSuite`.
- Enabled tests in `postgreSQL/timestamp.sql`.

Closes #26022 from MaxGekk/timestamp-diff.

Authored-by: Maxim Gekk <max.gekk@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-10-04 09:39:19 -07:00
Wenchen Fan 275e044ba8 [SPARK-29039][SQL] centralize the catalog and table lookup logic
### What changes were proposed in this pull request?

Currently we deal with different `ParsedStatement` in many places and write duplicated catalog/table lookup logic. In general the lookup logic is
1. try look up the catalog by name. If no such catalog, and default catalog is not set, convert `ParsedStatement` to v1 command like `ShowDatabasesCommand`. Otherwise, convert `ParsedStatement` to v2 command like `ShowNamespaces`.
2. try look up the table by name. If no such table, fail. If the table is a `V1Table`, convert `ParsedStatement` to v1 command like `CreateTable`. Otherwise, convert `ParsedStatement` to v2 command like `CreateV2Table`.

However, since the code is duplicated we don't apply this lookup logic consistently. For example, we forget to consider the v2 session catalog in several places.

This PR centralizes the catalog/table lookup logic by 3 rules.
1. `ResolveCatalogs` (in catalyst). This rule resolves v2 catalog from the multipart identifier in SQL statements, and convert the statement to v2 command if the resolved catalog is not session catalog. If the command needs to resolve the table (e.g. ALTER TABLE), put an `UnresolvedV2Table` in the command.
2. `ResolveTables` (in catalyst). It resolves `UnresolvedV2Table` to `DataSourceV2Relation`.
3. `ResolveSessionCatalog` (in sql/core). This rule is only effective if the resolved catalog is session catalog. For commands that don't need to resolve the table, this rule converts the statement to v1 command directly. Otherwise, it converts the statement to v1 command if the resolved table is v1 table, and convert to v2 command if the resolved table is v2 table. Hopefully we can remove this rule eventually when v1 fallback is not needed anymore.

### Why are the changes needed?

Reduce duplicated code and make the catalog/table lookup logic consistent.

### Does this PR introduce any user-facing change?

no

### How was this patch tested?

existing tests

Closes #25747 from cloud-fan/lookup.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-10-04 16:21:13 +08:00
Yuanjian Li 93289b54f5 [SPARK-29203][TESTS][MINOR][FOLLOW UP] Add access modifier for sparkConf in SQLQueryTestSuite
### What changes were proposed in this pull request?
Add access modifier `protected` for `sparkConf` in SQLQueryTestSuite, because in the parent trait SharedSparkSession, it is protected.

### Why are the changes needed?
Code consistency.

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
Existing UT.

Closes #26019 from xuanyuanking/SPARK-29203.

Authored-by: Yuanjian Li <xyliyuanjian@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2019-10-04 16:54:47 +09:00
Gengliang Wang 91747bd91b [SPARK-29326][SQL] ANSI store assignment policy: throw exception on casting failure
### What changes were proposed in this pull request?

1. With ANSI store assignment policy,  an exception is thrown on casting failure
2. Introduce a new expression `AnsiCast` for the ANSI store assignment policy, so that the store assignment policy configuration won't affect the general `Cast`.

### Why are the changes needed?

As per ANSI SQL standard, ANSI store assignment policy should throw an exception on insertion failure, such as inserting out-of-range value to a numeric field.

### Does this PR introduce any user-facing change?

With ANSI store assignment policy,  an exception is thrown on casting failure

### How was this patch tested?

Unit test

Closes #25997 from gengliangwang/newCast.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-10-04 15:53:38 +08:00
DB Tsai 8b71e545d5 [SPARK-29351][CORE] Avoid Full Synchronization in ShuffleMapStage
### What changes were proposed in this pull request?

This PR use read/write locks instead of `synchronized`.

### Why are the changes needed?

In one of our production streaming jobs that has more than 1k executors, and each has 20 cores, Spark spends significant portion of time (30s) in sending out the `ShuffeStatus`. We find there are two issues.

1. In driver's message loop, it's calling `serializedMapStatus` which is in sync block. When the job scales really big, it can cause the contention.
2. When the job is big, the `MapStatus` is huge as well, the serialization time and compression time is slow.

This PR aims to address the first problem.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Test with existing test cases.

Closes #26017 from dbtsai/readWriteLock.

Authored-by: DB Tsai <d_tsai@apple.com>
Signed-off-by: DB Tsai <d_tsai@apple.com>
2019-10-04 03:14:10 +00:00
HyukjinKwon 0f48aafab8 [SPARK-29339][R] Support Arrow 0.14 in vectoried dapply and gapply (test it in AppVeyor build)
### What changes were proposed in this pull request?

This PR proposes:

1. Use `is.data.frame` to check if it is a DataFrame.
2. to install Arrow and test Arrow optimization in AppVeyor build. We're currently not testing this in CI.

### Why are the changes needed?

1. To support SparkR with Arrow 0.14
2. To check if there's any regression and if it works correctly.

### Does this PR introduce any user-facing change?

```r
df <- createDataFrame(mtcars)
collect(dapply(df, function(rdf) { data.frame(rdf$gear + 1) }, structType("gear double")))
```

**Before:**

```
Error in readBin(con, raw(), as.integer(dataLen), endian = "big") :
  invalid 'n' argument
```

**After:**

```
   gear
1     5
2     5
3     5
4     4
5     4
6     4
7     4
8     5
9     5
...
```

### How was this patch tested?

AppVeyor

Closes #25993 from HyukjinKwon/arrow-r-appveyor.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2019-10-04 08:56:45 +09:00
maryannxue 8fabbab299 [SPARK-29350] Fix BroadcastExchange reuse in Dynamic Partition Pruning
### What changes were proposed in this pull request?
Dynamic partition pruning filters are added as an in-subquery containing a `BroadcastExchangeExec` in case of a broadcast hash join. This PR makes the `ReuseExchange` rule visit in-subquery nodes, to ensure the new `BroadcastExchangeExec` added by dynamic partition pruning can be reused.

### Why are the changes needed?
This initial dynamic partition pruning PR did not enable this reuse, which means a broadcast exchange would be executed twice, in the main query and in the DPP filter.

### Does this PR introduce any user-facing change?
No.

### How was this patch tested?
Added broadcast exchange reuse check in `DynamicPartitionPruningSuite`

Closes #26015 from maryannxue/exchange-reuse.

Authored-by: maryannxue <maryannxue@apache.org>
Signed-off-by: Xiao Li <gatorsmile@gmail.com>
2019-10-03 16:11:32 -07:00
zhouyongjin aedf090ab7 [SPARK-25468][WEBUI][FOLLOWUP] Current page index keep style with dataTable in the spark UI
### What changes were proposed in this pull request?
Current page index keep style with dataTable  in the spark UI.
https://issues.apache.org/jira/browse/SPARK-25468

move
.paginate_button.active > a {
    color: #999999;
    text-decoration: underline;
}

add
.paginate_button.active {
  border: 1px solid #979797 !important;
  background: white linear-gradient(to bottom, #fff 0%, #dcdcdc 100%);
}

### How was this patch tested?
![image](https://user-images.githubusercontent.com/8166352/65872683-b5303f80-e3b3-11e9-9785-9e1d15b0b3cf.png)
![image](https://user-images.githubusercontent.com/8166352/65872692-ba8d8a00-e3b3-11e9-8cf6-db6f905d3387.png)

Closes #25976 from YongjinZhou/master.

Authored-by: zhouyongjin <zhouyongjin@inspur.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-10-03 14:03:21 -05:00
Nik Vanderhoof 6f687691ef [SPARK-28962][SPARK-27297][SQL] Add overload for filter with index to functions object
### What changes were proposed in this pull request?
Add an overload for the higher order function `filter` that takes array index as its second argument to `org.apache.spark.sql.functions`.

### Why are the changes needed?
See: SPARK-28962 and SPARK-27297. Specifically ueshin pointing out the discrepency here: https://github.com/apache/spark/pull/24232#issuecomment-533288653

### Does this PR introduce any user-facing change?

### How was this patch tested?
Updated the these test suites:

`test.org.apache.spark.sql.JavaHigherOrderFunctionsSuite`
and
`org.apache.spark.sql.DataFrameFunctionsSuite`

Closes #26007 from nvander1/add_index_overload_for_filter.

Authored-by: Nik Vanderhoof <nikolasrvanderhoof@gmail.com>
Signed-off-by: Takuya UESHIN <ueshin@databricks.com>
2019-10-03 11:12:14 -07:00
Gabor Somogyi 6b5e0e2469 [SPARK-29054][SS] Invalidate Kafka consumer when new delegation token available
### What changes were proposed in this pull request?
Kafka consumers are cached. If delegation token is used and the token is expired, then exception is thrown. Such case new consumer is created in a Task retry with the latest delegation token. This can be enhanced by detecting the existence of a new delegation token. In this PR I'm detecting whether the token in the consumer is the same as the latest stored in the `UGI` (`targetServersRegex` must match not to create a consumer with another cluster's token).

### Why are the changes needed?
It would be good to avoid Task retry to pick up the latest delegation token.

### Does this PR introduce any user-facing change?
No.

### How was this patch tested?
Existing + new unit tests.
Additionally executed the following code snippet to measure `ensureConsumerHasLatestToken` time consumption:
```
    val startTimeNs = System.nanoTime()
    for (i <- 0 until 10000) {
      consumer.ensureConsumerHasLatestToken()
    }
    logInfo(s"It took ${TimeUnit.NANOSECONDS.toMillis(System.nanoTime() - startTimeNs)} ms" +
      " to call ensureConsumerHasLatestToken 10000 times")
```

And here are the results:
```
19/09/11 14:58:22 INFO KafkaDataConsumerSuite: It took 1058 ms to call ensureConsumerHasLatestToken 10000 times
...
19/09/11 14:58:23 INFO KafkaDataConsumerSuite: It took 780 ms to call ensureConsumerHasLatestToken 10000 times
...
19/09/11 15:12:11 INFO KafkaDataConsumerSuite: It took 1032 ms to call ensureConsumerHasLatestToken 10000 times
...
19/09/11 15:12:11 INFO KafkaDataConsumerSuite: It took 679 ms to call ensureConsumerHasLatestToken 10000 times
```

Closes #25760 from gaborgsomogyi/SPARK-29054.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
2019-10-03 09:34:31 -07:00
Dongjoon Hyun 4e0e4e51c4 [MINOR][TESTS] Rename JSONBenchmark to JsonBenchmark
### What changes were proposed in this pull request?

This PR renames `object JSONBenchmark` to `object JsonBenchmark` and the benchmark result file `JSONBenchmark-results.txt` to `JsonBenchmark-results.txt`.

### Why are the changes needed?

Since the file name doesn't match with `object JSONBenchmark`, it makes a confusion when we run the benchmark. In addition, this makes the automation difficult.
```
$ find . -name JsonBenchmark.scala
./sql/core/src/test/scala/org/apache/spark/sql/execution/datasources/json/JsonBenchmark.scala
```
```
$ build/sbt "sql/test:runMain org.apache.spark.sql.execution.datasources.json.JsonBenchmark"
[info] Running org.apache.spark.sql.execution.datasources.json.JsonBenchmark
[error] Error: Could not find or load main class org.apache.spark.sql.execution.datasources.json.JsonBenchmark
```

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

This is just renaming.

Closes #26008 from dongjoon-hyun/SPARK-RENAME-JSON.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-10-03 09:02:06 -07:00
Dongjoon Hyun 854a0f752e [SPARK-29320][TESTS] Compare sql/core module in JDK8/11 (Part 1)
### What changes were proposed in this pull request?

This PR regenerates the `sql/core` benchmarks in JDK8/11 to compare the result. In general, we compare the ratio instead of the time. However, in this PR, the average time is compared. This PR should be considered as a rough comparison.

**A. EXPECTED CASES(JDK11 is faster in general)**
- [x] BloomFilterBenchmark (JDK11 is faster except one case)
- [x] BuiltInDataSourceWriteBenchmark (JDK11 is faster at CSV/ORC)
- [x] CSVBenchmark (JDK11 is faster except five cases)
- [x] ColumnarBatchBenchmark (JDK11 is faster at `boolean`/`string` and some cases in `int`/`array`)
- [x] DatasetBenchmark (JDK11 is faster with `string`, but is slower for `long` type)
- [x] ExternalAppendOnlyUnsafeRowArrayBenchmark (JDK11 is faster except two cases)
- [x] ExtractBenchmark (JDK11 is faster except HOUR/MINUTE/SECOND/MILLISECONDS/MICROSECONDS)
- [x] HashedRelationMetricsBenchmark (JDK11 is faster)
- [x] JSONBenchmark (JDK11 is much faster except eight cases)
- [x] JoinBenchmark (JDK11 is faster except five cases)
- [x] OrcNestedSchemaPruningBenchmark (JDK11 is faster in nine cases)
- [x] PrimitiveArrayBenchmark (JDK11 is faster)
- [x] SortBenchmark (JDK11 is faster except `Arrays.sort` case)
- [x] UDFBenchmark (N/A, values are too small)
- [x] UnsafeArrayDataBenchmark (JDK11 is faster except one case)
- [x] WideTableBenchmark (JDK11 is faster except two cases)

**B. CASES WE NEED TO INVESTIGATE MORE LATER**
- [x] AggregateBenchmark (JDK11 is slower in general)
- [x] CompressionSchemeBenchmark (JDK11 is slower in general except `string`)
- [x] DataSourceReadBenchmark (JDK11 is slower in general)
- [x] DateTimeBenchmark (JDK11 is slightly slower in general except `parsing`)
- [x] MakeDateTimeBenchmark (JDK11 is slower except two cases)
- [x] MiscBenchmark (JDK11 is slower except ten cases)
- [x] OrcV2NestedSchemaPruningBenchmark (JDK11 is slower)
- [x] ParquetNestedSchemaPruningBenchmark (JDK11 is slower except six cases)
- [x] RangeBenchmark (JDK11 is slower except one case)

`FilterPushdownBenchmark/InExpressionBenchmark/WideSchemaBenchmark` will be compared later because it took long timer.

### Why are the changes needed?

According to the result, there are some difference between JDK8/JDK11.
This will be a baseline for the future improvement and comparison. Also, as a reproducible  environment, the following environment is used.
- Instance: `r3.xlarge`
- OS: `CentOS Linux release 7.5.1804 (Core)`
- JDK:
  - `OpenJDK Runtime Environment (build 1.8.0_222-b10)`
  - `OpenJDK Runtime Environment 18.9 (build 11.0.4+11-LTS)`

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

This is a test-only PR. We need to run benchmark.

Closes #26003 from dongjoon-hyun/SPARK-29320.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-10-03 08:58:25 -07:00
Sean Owen 7aca0dd658 [SPARK-29296][BUILD][CORE] Remove use of .par to make 2.13 support easier; add scala-2.13 profile to enable pulling in par collections library separately, for the future
### What changes were proposed in this pull request?

Scala 2.13 removes the parallel collections classes to a separate library, so first, this establishes a `scala-2.13` profile to bring it back, for future use.

However the library enables use of `.par` implicit conversions via a new class that is not in 2.12, which makes cross-building hard. This implements a suggested workaround from https://github.com/scala/scala-parallel-collections/issues/22 to avoid `.par` entirely.

### Why are the changes needed?

To compile for 2.13 and later to work with 2.13.

### Does this PR introduce any user-facing change?

Should not, no.

### How was this patch tested?

Existing tests.

Closes #25980 from srowen/SPARK-29296.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-10-03 08:56:08 -05:00
Liang-Chi Hsieh 2bc3fff13b [SPARK-29341][PYTHON] Upgrade cloudpickle to 1.0.0
### What changes were proposed in this pull request?

This patch upgrades cloudpickle to 1.0.0 version.

Main changes:

1. cleanup unused functions: 936f16fac8
2. Fix relative imports inside function body: 31ecdd6f57
3. Write kw only arguments to pickle: 6cb4718528

### Why are the changes needed?

We should include new bug fix like 6cb4718528, because users might use such python function in PySpark.

```python
>>> def f(a, *, b=1):
...   return a + b
...
>>> rdd = sc.parallelize([1, 2, 3])
>>> rdd.map(f).collect()
[Stage 0:>                                                        (0 + 12) / 12]19/10/03 00:42:24 ERROR Executor: Exception in task 3.0 in stage 0.0 (TID 3)
org.apache.spark.api.python.PythonException: Traceback (most recent call last):
  File "/spark/python/lib/pyspark.zip/pyspark/worker.py", line 598, in main
    process()
  File "/spark/python/lib/pyspark.zip/pyspark/worker.py", line 590, in process
    serializer.dump_stream(out_iter, outfile)
  File "/spark/python/lib/pyspark.zip/pyspark/serializers.py", line 513, in dump_stream
    vs = list(itertools.islice(iterator, batch))
  File "/spark/python/lib/pyspark.zip/pyspark/util.py", line 99, in wrapper
    return f(*args, **kwargs)
TypeError: f() missing 1 required keyword-only argument: 'b'
```

After:

```python
>>> def f(a, *, b=1):
...   return a + b
...
>>> rdd = sc.parallelize([1, 2, 3])
>>> rdd.map(f).collect()
[2, 3, 4]
```

### Does this PR introduce any user-facing change?

Yes. This fixes two bugs when pickling Python functions.

### How was this patch tested?

Existing tests.

Closes #26009 from viirya/upgrade-cloudpickle.

Authored-by: Liang-Chi Hsieh <viirya@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2019-10-03 19:20:51 +09:00
zero323 858bf76e35 [SPARK-29142][PYTHON][ML][FOLLOWUP][DOC] Replace incorrect :py:attr: applications
### What changes were proposed in this pull request?

This PR replaces some references with correct ones (`:py:class:`).

### Why are the changes needed?

Newly added mixins from the original PR incorrectly reference classes with `:py:attr:`.  While these classes are marked as internal, and not rendered in the standard documentation, it still makes sense to use correct roles.

### Does this PR introduce any user-facing change?

No. The changed part is not a part of generated PySpark documents.

### How was this patch tested?

Since this PR is a kind of typo fix, manually checking the patch.
We can build document for compilation test although there is no UI change.

Closes #26004 from zero323/SPARK-29142-FOLLOWUP.

Authored-by: zero323 <mszymkiewicz@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-10-03 02:45:44 -07:00
s71955 ee66890f30 [SPARK-28084][SQL] Resolving the partition column name based on the resolver in sql load command
### What changes were proposed in this pull request?

LOAD DATA command resolves the partition column name as case sensitive manner,
where as in insert commandthe partition column name will be resolved using
the SQLConf resolver where the names will be resolved based on `spark.sql.caseSensitive` property. Same logic can be applied for resolving the partition column names in LOAD COMMAND.

### Why are the changes needed?

It's to handle the partition column name correctly according to the configuration.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Existing UT and manual testing.

Closes #24903 from sujith71955/master_paritionColName.

Lead-authored-by: s71955 <sujithchacko.2010@gmail.com>
Co-authored-by: sujith71955 <sujithchacko.2010@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-10-03 01:11:48 -07:00
HyukjinKwon 40485f4656 [SPARK-29317][SQL][PYTHON] Avoid inheritance hierarchy in pandas CoGroup arrow runner and its plan
### What changes were proposed in this pull request?

This PR proposes to avoid abstract classes introduced at https://github.com/apache/spark/pull/24965 but instead uses trait and object.

- `abstract class BaseArrowPythonRunner` -> `trait PythonArrowOutput` to allow mix-in

    **Before:**

    ```
    BasePythonRunner
    ├── BaseArrowPythonRunner
    │   ├── ArrowPythonRunner
    │   └── CoGroupedArrowPythonRunner
    ├── PythonRunner
    └── PythonUDFRunner
    ```

    **After:**

    ```
    └── BasePythonRunner
        ├── ArrowPythonRunner
        ├── CoGroupedArrowPythonRunner
        ├── PythonRunner
        └── PythonUDFRunner
    ```
- `abstract class BasePandasGroupExec ` -> `object PandasGroupUtils` to decouple

    **Before:**

    ```
    └── BasePandasGroupExec
        ├── FlatMapGroupsInPandasExec
        └── FlatMapCoGroupsInPandasExec
    ```

    **After:**

    ```
    ├── FlatMapGroupsInPandasExec
    └── FlatMapCoGroupsInPandasExec
    ```

### Why are the changes needed?

The problem is that R code path is being matched with Python side:

**Python:**

```
└── BasePythonRunner
    ├── ArrowPythonRunner
    ├── CoGroupedArrowPythonRunner
    ├── PythonRunner
    └── PythonUDFRunner
```

**R:**

```
└── BaseRRunner
    ├── ArrowRRunner
    └── RRunner
```

I would like to match the hierarchy and decouple other stuff for now if possible. Ideally we should deduplicate both code paths. Internal implementation is also similar intentionally.

`BasePandasGroupExec` case is similar as well. R (with Arrow optimization, in particular) has some duplicated codes with Pandas UDFs.

`FlatMapGroupsInRWithArrowExec` <> `FlatMapGroupsInPandasExec`
`MapPartitionsInRWithArrowExec` <> `ArrowEvalPythonExec`

In order to prepare deduplication here as well, it might better avoid changing hierarchy alone in Python side.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Locally tested existing tests. Jenkins tests should verify this too.

Closes #25989 from HyukjinKwon/SPARK-29317.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2019-10-03 16:42:37 +09:00
angerszhu 178a1f3558 [SPARK-29305][BUILD] Update LICENSE and NOTICE for Hadoop 3.2
### What changes were proposed in this pull request?
This PR update LICENSE and NOTICE for Hadoop 3.2. Hadoop 3.2 newly added jars:

```
com.fasterxml.jackson.jaxrs:jackson-jaxrs-base:2.9.5
com.fasterxml.jackson.jaxrs:jackson-jaxrs-json-provider:2.9.5
com.fasterxml.woodstox:woodstox-core:5.0.3
com.github.stephenc.jcip:jcip-annotations:1.0-1
com.google.re2j:re2j:1.1
com.microsoft.sqlserver:mssql-jdbc:6.2.1.jre7
com.nimbusds:nimbus-jose-jwt:4.41.1
dnsjava:dnsjava:2.1.7
net.minidev:accessors-smart:1.2
net.minidev:json-smart:2.3
org.apache.commons:commons-configuration2:2.1.1
org.apache.geronimo.specs:geronimo-jcache_1.0_spec:1.0-alpha-1
org.apache.hadoop:hadoop-hdfs-client:3.2.0
org.apache.kerby:kerb-admin:1.0.1
org.apache.kerby:kerb-client:1.0.1
org.apache.kerby:kerb-common:1.0.1
org.apache.kerby:kerb-core:1.0.1
org.apache.kerby:kerb-crypto:1.0.1
org.apache.kerby:kerb-identity:1.0.1
org.apache.kerby:kerb-server:1.0.1
org.apache.kerby:kerb-simplekdc:1.0.1
org.apache.kerby:kerb-util:1.0.1
org.apache.kerby:kerby-asn1:1.0.1
org.apache.kerby:kerby-config:1.0.1
org.apache.kerby:kerby-pkix:1.0.1
org.apache.kerby:kerby-util:1.0.1
org.apache.kerby:kerby-xdr:1.0.1
org.apache.kerby:token-provider:1.0.1
org.codehaus.woodstox:stax2-api:3.1.4
org.ehcache:ehcache:3.3.1
```
### Why are the changes needed?
We will distribute a binary release based on Hadoop 3.2 / Hive 2.3 in future.

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
N/A

Closes #25978 from AngersZhuuuu/SPARK-29035.

Authored-by: angerszhu <angers.zhu@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-10-03 01:02:41 -05:00
Jungtaek Lim (HeartSaVioR) e44d191bf7 [SPARK-29322][CORE] Enable closeFrameOnFlush on ZstdOutputStream for event log file
### What changes were proposed in this pull request?

This patch proposes to enable `closeFrameOnFlush` for ZstdOutputStream specific to event logger, so that continuous input stream of zstd is not stuck when reading "inprogress" event log file.

The issue seems to be introduced from [SPARK-26283](https://issues.apache.org/jira/browse/SPARK-26283) which addressed some bug via reading event log file with enabling continuous mode, but it changed the behavior of input stream to read open frame, which seem to wait for frame to be closed. Enabling `closeFrameOnFlush` would close frame whenever flush is called, so input stream could read the frame sooner.

As a pair of `compressedContinuousInputStream`, this patch adds `compressedContinuousOutputStream` which will be only used for event logging.

### Why are the changes needed?

Without this patch, the reader thread in SHS is stuck on reading inprogress event log file compressed with zstd until the application becomes finished.

### Does this PR introduce any user-facing change?

It might bring some overhead on each flush when writing zstd compressed event log, so some sort of performance hit could be introduced. I've restricted the case to only event logging.

### How was this patch tested?

Manually tested, via setting Spark configuration as below:

```
spark.eventLog.enabled                     true
spark.eventLog.compress                  true
spark.eventLog.compression.codec zstd
```

and start Spark application. While the application is running, load the application in SHS webpage.

Before this patch, it may succeed to replay the event log, but high likely it will be stuck and loading page will be also stuck. After this patch, SHS can properly reads the inprogress event log file.

Closes #25996 from HeartSaVioR/SPARK-29322.

Authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan.opensource@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2019-10-02 20:48:38 -07:00