Commit graph

4952 commits

Author SHA1 Message Date
Reynold Xin e9ff13ec72 Consolidated both mapPartitions related RDDs into a single MapPartitionsRDD.
Also changed the semantics of the index parameter in mapPartitionsWithIndex from the partition index of the output partition to the partition index in the current RDD.
2013-11-24 17:56:43 +08:00
Reynold Xin 718cc803f7 Merge pull request #200 from mateiz/hash-fix
AppendOnlyMap fixes

- Chose a more random reshuffling step for values returned by Object.hashCode to avoid some long chaining that was happening for consecutive integers (e.g. `sc.makeRDD(1 to 100000000, 100).map(t => (t, t)).reduceByKey(_ + _).count`)
- Some other small optimizations throughout (see commit comments)
2013-11-24 11:02:02 +08:00
Matei Zaharia 9837a60234 Some other optimizations to AppendOnlyMap:
- Don't check keys for equality when re-inserting due to growing the
  table; the keys will already be unique
- Remember the grow threshold instead of recomputing it on each insert
2013-11-23 17:38:29 -08:00
Matei Zaharia 7535d7fbcb Fixes to AppendOnlyMap:
- Use Murmur Hash 3 finalization step to scramble the bits of HashCode
  instead of the simpler version in java.util.HashMap; the latter one
  had trouble with ranges of consecutive integers. Murmur Hash 3 is used
  by fastutil.
- Use Object.equals() instead of Scala's == to compare keys, because the
  latter does extra casts for numeric types (see the equals method in
  https://github.com/scala/scala/blob/master/src/library/scala/runtime/BoxesRunTime.java)
2013-11-23 17:21:37 -08:00
Harvey Feng 4f1c3fa5d7 Hadoop 2.2 YARN API migration for SPARK_HOME/new-yarn 2013-11-23 17:08:30 -08:00
Harvey Feng ab8652f2d3 Add a "new-yarn" directory in SPARK_HOME, intended to contain Hadoop-2.2 API changes. 2013-11-23 17:08:30 -08:00
Harvey Feng a67ebf4377 A few more style fixes in yarn package. 2013-11-23 17:08:30 -08:00
Reynold Xin 51aa9d6e99 Merge pull request #198 from ankurdave/zipPartitions-preservesPartitioning
Support preservesPartitioning in RDD.zipPartitions

In `RDD.zipPartitions`, add support for a `preservesPartitioning` option (similar to `RDD.mapPartitions`) that reuses the first RDD's partitioner.
2013-11-23 19:46:46 +08:00
Ankur Dave c1507afc6c Support preservesPartitioning in RDD.zipPartitions 2013-11-23 03:03:31 -08:00
Aaron Davidson ccea38b759 Fix 'timeWriting' stat for shuffle files
Due to concurrent git branches, changes from shuffle file consolidation patch
caused the shuffle write timing patch to no longer actually measure the time,
since it requires time be measured after the stream has been closed.
2013-11-21 21:36:08 -08:00
Reynold Xin 086b097e33 Merge pull request #193 from aoiwelle/patch-1
Fix Kryo Serializer buffer documentation inconsistency

The documentation here is inconsistent with the coded default and other documentation.
2013-11-22 10:26:39 +08:00
Reynold Xin f20093c3af Merge pull request #196 from pwendell/master
TimeTrackingOutputStream should pass on calls to close() and flush().

Without this fix you get a huge number of open files when running shuffles.
2013-11-22 10:12:13 +08:00
Raymond Liu ab3cefde53 Add YarnClientClusterScheduler and Backend.
With this scheduler, the user application is launched locally,
While the executor will be launched by YARN on remote nodes.

This enables spark-shell to run upon YARN.
2013-11-22 09:23:27 +08:00
Patrick Wendell 53b94ef2f5 TimeTrackingOutputStream should pass on calls to close() and flush().
Without this fix you get a huge number of open shuffles after running
shuffles.
2013-11-21 17:20:15 -08:00
Kay Ousterhout fc78f67da2 Added logging of scheduler delays to UI 2013-11-21 16:54:23 -08:00
dhardy92 92c7cc00fb [Deb] fix package of Spark classes adding org.apache prefix in scripts embeded in .deb 2013-11-21 18:51:36 +01:00
Harvey Feng 9eae80f111 Merge branch 'master' into yarn-cleanup
Conflicts:
	yarn/src/main/scala/org/apache/spark/deploy/yarn/ApplicationMaster.scala
	yarn/src/main/scala/org/apache/spark/deploy/yarn/Client.scala
	yarn/src/main/scala/org/apache/spark/deploy/yarn/WorkerRunnable.scala
	yarn/src/main/scala/org/apache/spark/deploy/yarn/YarnAllocationHandler.scala
2013-11-21 03:41:57 -08:00
Prashant Sharma 95d8dbce91 Merge branch 'master' of github.com:apache/incubator-spark into scala-2.10-temp
Conflicts:
	core/src/main/scala/org/apache/spark/util/collection/PrimitiveVector.scala
	streaming/src/main/scala/org/apache/spark/streaming/api/java/JavaStreamingContext.scala
2013-11-21 12:34:46 +05:30
Prashant Sharma 199e9cf02d Merge branch 'scala210-master' of github.com:colorant/incubator-spark into scala-2.10
Conflicts:
	core/src/main/scala/org/apache/spark/deploy/client/Client.scala
	core/src/main/scala/org/apache/spark/deploy/worker/Worker.scala
	core/src/main/scala/org/apache/spark/executor/CoarseGrainedExecutorBackend.scala
	core/src/test/scala/org/apache/spark/MapOutputTrackerSuite.scala
2013-11-21 11:55:48 +05:30
Neal Wiggins 21b5478ed6 Fix Kryo Serializer buffer inconsistency
The documentation here is inconsistent with the coded default and other documentation.
2013-11-20 16:19:25 -08:00
Reynold Xin 2fead510f7 Merge branch 'master' of github.com:tbfenet/incubator-spark
PartitionPruningRDD is using index from parent

I was getting a ArrayIndexOutOfBoundsException exception after doing union on pruned RDD. The index it was using on the partition was the index in the original RDD not the new pruned RDD.
2013-11-21 07:15:55 +08:00
Matei Zaharia 4b895013cc Merge pull request #191 from hsaputra/removesemicolonscala
Cleanup to remove semicolons (;) from Scala code

-) The main reason for this PR is to remove semicolons from single statements of Scala code.
-) Remove unused imports as I see them
-) Fix ASF comment header from some of files (bad copy paste I suppose)
2013-11-20 10:36:10 -08:00
Marek Kolodziej 22724659db Make XORShiftRandom explicit in KMeans and roll it back for RDD 2013-11-20 07:03:36 -05:00
Marek Kolodziej bcc6ed30bf Formatting and scoping (private[spark]) updates 2013-11-19 20:50:38 -05:00
Henry Saputra 43dfac5132 Merge branch 'master' into removesemicolonscala 2013-11-19 16:57:57 -08:00
Henry Saputra 10be58f251 Another set of changes to remove unnecessary semicolon (;) from Scala code.
Passed the sbt/sbt compile and test
2013-11-19 16:56:23 -08:00
Matei Zaharia f568912f85 Merge pull request #181 from BlackNiuza/fix_tasks_number
correct number of tasks in ExecutorsUI

Index `a` is not `execId` here
2013-11-19 16:11:31 -08:00
Matei Zaharia aa638ed9c1 Merge pull request #189 from tgravescs/sparkYarnErrorHandling
Impove Spark on Yarn Error handling

Improve cli error handling and only allow a certain number of worker failures before failing the application.  This will help prevent users from doing foolish things and their jobs running forever.  For instance using 32 bit java but trying to allocate 8G containers. This loops forever without this change, now it errors out after a certain number of retries.  The number of tries is configurable.  Also increase the frequency we ping the RM to increase speed at which we get containers if they die. The Yarn MR app defaults to pinging the RM every 1 seconds, so the default of 5 seconds here is fine. But that is configurable as well in case people want to change it.

I do want to make sure there aren't any cases that calling stopExecutors in CoarseGrainedSchedulerBackend would cause problems?  I couldn't think of any and testing on standalone cluster as well as yarn.
2013-11-19 16:05:44 -08:00
Matei Zaharia 55925805fc Merge pull request #187 from aarondav/example-bcast-test
Enable the Broadcast examples to work in a cluster setting

Since they rely on println to display results, we need to first collect those results to the driver to have them actually display locally.

This issue came up on the mailing lists [here](http://mail-archives.apache.org/mod_mbox/incubator-spark-user/201311.mbox/%3C2013111909591557147628%40ict.ac.cn%3E).
2013-11-19 16:04:01 -08:00
tgravescs 4093e9393a Impove Spark on Yarn Error handling 2013-11-19 12:44:00 -06:00
Henry Saputra 9c934b640f Remove the semicolons at the end of Scala code to make it more pure Scala code.
Also remove unused imports as I found them along the way.
Remove return statements when returning value in the Scala code.

Passing compile and tests.
2013-11-19 10:19:03 -08:00
Matthew Taylor f639b65eab PartitionPruningRDD is using index from parent(review changes) 2013-11-19 10:48:48 +00:00
Aaron Davidson 50fd8d98c0 Enable the Broadcast examples to work in a cluster setting
Since they rely on println to display results, we need to first collect
those results to the driver to have them actually display locally.
2013-11-18 22:51:35 -08:00
Matthew Taylor 13b9bf494b PartitionPruningRDD is using index from parent 2013-11-19 06:27:33 +00:00
Holden Karau e163e31c20 Add spaces 2013-11-18 20:13:25 -08:00
Holden Karau 7de180fd13 Remove explicit boxing 2013-11-18 20:05:05 -08:00
Marek Kolodziej 99cfe89c68 Updates to reflect pull request code review 2013-11-18 22:00:36 -05:00
Marek Kolodziej 09bdfe3b16 XORShift RNG with unit tests and benchmark
To run unit test, start SBT console and type:
compile
test-only org.apache.spark.util.XORShiftRandomSuite
To run benchmark, type:
project core
console
Once the Scala console starts, type:
org.apache.spark.util.XORShiftRandom.benchmark(100000000)
2013-11-18 15:21:43 -05:00
Russell Cardullo 1360f62d15 Cleanup GraphiteSink.scala based on feedback
* Reorder imports according to the style guide
* Consistently use propertyToOption in all places
2013-11-18 08:53:39 -08:00
Harvey Feng a98f5a0ebb Misc style changes in the 'yarn' package. 2013-11-17 22:35:56 -08:00
shiyun.wxm eda05fa439 use HashSet.empty[Long] instead of Seq[Long] 2013-11-18 13:31:14 +08:00
Reynold Xin e2ebc3a9d8 Merge pull request #182 from rxin/vector
Slightly enhanced PrimitiveVector:

1. Added trim() method
2. Added size method.
3. Renamed getUnderlyingArray to array.
4. Minor documentation update.
2013-11-17 18:42:18 -08:00
Reynold Xin 26f616d73a Merge pull request #3 from aarondav/pv-test
Add PrimitiveVectorSuite and fix bug in resize()
2013-11-17 18:18:16 -08:00
Aaron Davidson 85763f4942 Add PrimitiveVectorSuite and fix bug in resize() 2013-11-17 18:16:51 -08:00
Reynold Xin 16a2286d6d Return the vector itself for trim and resize method in PrimitiveVector. 2013-11-17 17:52:02 -08:00
BlackNiuza ecfbaf2442 rename "a" to "statusId" 2013-11-18 09:51:40 +08:00
Reynold Xin c30979c7d6 Slightly enhanced PrimitiveVector:
1. Added trim() method
2. Added size method.
3. Renamed getUnderlyingArray to array.
4. Minor documentation update.
2013-11-17 17:09:40 -08:00
BlackNiuza b60839e56a correct number of tasks in ExecutorsUI 2013-11-17 21:38:57 +08:00
Matei Zaharia 1b5b358309 Merge pull request #178 from hsaputra/simplecleanupcode
Simple cleanup on Spark's Scala code

Simple cleanup on Spark's Scala code while testing some modules:
-) Remove some of unused imports as I found them
-) Remove ";" in the imports statements
-) Remove () at the end of method calls like size that does not have size effect.
2013-11-16 11:44:10 -08:00
Kay Ousterhout 2b0a6e7d92 Fixed error message in ClusterScheduler to be consistent with the old LocalScheduler 2013-11-15 18:34:28 -08:00