Commit graph

8 commits

Author SHA1 Message Date
wangmiao1981 a7b46c627b [SPARK-20307][SPARKR] SparkR: pass on setHandleInvalid to spark.mllib functions that use StringIndexer
## What changes were proposed in this pull request?

For randomForest classifier, if test data contains unseen labels, it will throw an error. The StringIndexer already has the handleInvalid logic. The patch add a new method to set the underlying StringIndexer handleInvalid logic.

This patch should also apply to other classifiers. This PR focuses on the main logic and randomForest classifier. I will do follow-up PR for other classifiers.

## How was this patch tested?

Add a new unit test based on the error case in the JIRA.

Author: wangmiao1981 <wm624@hotmail.com>

Closes #18496 from wangmiao1981/handle.
2017-07-07 23:51:32 -07:00
hyukjinkwon db44f5f3e8 [SPARK-21224][R] Specify a schema by using a DDL-formatted string when reading in R
## What changes were proposed in this pull request?

This PR proposes to support a DDL-formetted string as schema as below:

```r
mockLines <- c("{\"name\":\"Michael\"}",
               "{\"name\":\"Andy\", \"age\":30}",
               "{\"name\":\"Justin\", \"age\":19}")
jsonPath <- tempfile(pattern = "sparkr-test", fileext = ".tmp")
writeLines(mockLines, jsonPath)
df <- read.df(jsonPath, "json", "name STRING, age DOUBLE")
collect(df)
```

## How was this patch tested?

Tests added in `test_streaming.R` and `test_sparkSQL.R` and manual tests.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #18431 from HyukjinKwon/r-ddl-schema.
2017-06-28 19:36:00 -07:00
hyukjinkwon 07479b3cfb [SPARK-21149][R] Add job description API for R
## What changes were proposed in this pull request?

Extend `setJobDescription` to SparkR API.

## How was this patch tested?

It looks difficult to add a test. Manually tested as below:

```r
df <- createDataFrame(iris)
count(df)
setJobDescription("This is an example job.")
count(df)
```

prints ...

![2017-06-22 12 05 49](https://user-images.githubusercontent.com/6477701/27415670-2a649936-5743-11e7-8e95-312f1cd103af.png)

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #18382 from HyukjinKwon/SPARK-21149.
2017-06-23 09:59:24 -07:00
wangmiao1981 53543374ce [SPARK-20906][SPARKR] Constrained Logistic Regression for SparkR
## What changes were proposed in this pull request?

PR https://github.com/apache/spark/pull/17715 Added Constrained Logistic Regression for ML. We should add it to SparkR.

## How was this patch tested?

Add new unit tests.

Author: wangmiao1981 <wm624@hotmail.com>

Closes #18128 from wangmiao1981/test.
2017-06-21 20:42:45 -07:00
actuaryzhang ad459cfb1d [SPARK-20917][ML][SPARKR] SparkR supports string encoding consistent with R
## What changes were proposed in this pull request?

Add `stringIndexerOrderType` to `spark.glm` and `spark.survreg` to support string encoding that is consistent with default R.

## How was this patch tested?
new tests

Author: actuaryzhang <actuaryzhang10@gmail.com>

Closes #18140 from actuaryzhang/sparkRFormula.
2017-06-21 10:35:16 -07:00
actuaryzhang 110ce1f27b [SPARK-20892][SPARKR] Add SQL trunc function to SparkR
## What changes were proposed in this pull request?

Add SQL trunc function

## How was this patch tested?
standard test

Author: actuaryzhang <actuaryzhang10@gmail.com>

Closes #18291 from actuaryzhang/sparkRTrunc2.
2017-06-18 18:00:27 -07:00
Felix Cheung 9f4ff95524 [SPARK-20877][SPARKR][FOLLOWUP] clean up after test move
## What changes were proposed in this pull request?

clean up after big test move

## How was this patch tested?

unit tests, jenkins

Author: Felix Cheung <felixcheung_m@hotmail.com>

Closes #18267 from felixcheung/rtestset2.
2017-06-11 03:00:44 -07:00
Felix Cheung dc4c351837 [SPARK-20877][SPARKR] refactor tests to basic tests only for CRAN
## What changes were proposed in this pull request?

Move all existing tests to non-installed directory so that it will never run by installing SparkR package

For a follow-up PR:
- remove all skip_on_cran() calls in tests
- clean up test timer
- improve or change basic tests that do run on CRAN (if anyone has suggestion)

It looks like `R CMD build pkg` will still put pkg\tests (ie. the full tests) into the source package but `R CMD INSTALL` on such source package does not install these tests (and so `R CMD check` does not run them)

## How was this patch tested?

- [x] unit tests, Jenkins
- [x] AppVeyor
- [x] make a source package, install it, `R CMD check` it - verify the full tests are not installed or run

Author: Felix Cheung <felixcheung_m@hotmail.com>

Closes #18264 from felixcheung/rtestset.
2017-06-11 00:00:33 -07:00