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6769 commits

Author SHA1 Message Date
Tathagata Das b3d88ac029 [SPARK-22187][SS] Update unsaferow format for saved state in flatMapGroupsWithState to allow timeouts with deleted state
## What changes were proposed in this pull request?

Currently, the group state of user-defined-type is encoded as top-level columns in the UnsafeRows stores in the state store. The timeout timestamp is also saved as (when needed) as the last top-level column. Since the group state is serialized to top-level columns, you cannot save "null" as a value of state (setting null in all the top-level columns is not equivalent). So we don't let the user set the timeout without initializing the state for a key. Based on user experience, this leads to confusion.

This PR is to change the row format such that the state is saved as nested columns. This would allow the state to be set to null, and avoid these confusing corner cases. However, queries recovering from existing checkpoint will use the previous format to maintain compatibility with existing production queries.

## How was this patch tested?
Refactored existing end-to-end tests and added new tests for explicitly testing obj-to-row conversion for both state formats.

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #21739 from tdas/SPARK-22187-1.
2018-07-19 13:17:28 -07:00
Gengliang Wang 6a9a058e09 [SPARK-24858][SQL] Avoid unnecessary parquet footer reads
## What changes were proposed in this pull request?

Currently the same Parquet footer is read twice in the function `buildReaderWithPartitionValues` of ParquetFileFormat if filter push down is enabled.

Fix it with simple changes.
## How was this patch tested?

Unit test

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21814 from gengliangwang/parquetFooter.
2018-07-19 22:24:53 +08:00
Jungtaek Lim 8b7d4f842f [SPARK-24717][SS] Split out max retain version of state for memory in HDFSBackedStateStoreProvider
## What changes were proposed in this pull request?

This patch proposes breaking down configuration of retaining batch size on state into two pieces: files and in memory (cache). While this patch reuses existing configuration for files, it introduces new configuration, "spark.sql.streaming.maxBatchesToRetainInMemory" to configure max count of batch to retain in memory.

## How was this patch tested?

Apply this patch on top of SPARK-24441 (https://github.com/apache/spark/pull/21469), and manually tested in various workloads to ensure overall size of states in memory is around 2x or less of the size of latest version of state, while it was 10x ~ 80x before applying the patch.

Author: Jungtaek Lim <kabhwan@gmail.com>

Closes #21700 from HeartSaVioR/SPARK-24717.
2018-07-19 00:07:35 -07:00
Wenchen Fan d05a926e78 [SPARK-24840][SQL] do not use dummy filter to switch codegen on/of
## What changes were proposed in this pull request?

It's a little tricky and fragile to use a dummy filter to switch codegen on/off. For now we should use local/cached relation to switch. In the future when we are able to use a config to turn off codegen, we shall use that.

## How was this patch tested?

test only PR.

Author: Wenchen Fan <wenchen@databricks.com>

Closes #21795 from cloud-fan/follow.
2018-07-19 11:54:41 +08:00
Sean Owen 753f115162 [SPARK-21261][DOCS][SQL] SQL Regex document fix
## What changes were proposed in this pull request?

Fix regexes in spark-sql command examples.
This takes over https://github.com/apache/spark/pull/18477

## How was this patch tested?

Existing tests. I verified the existing example doesn't work in spark-sql, but new ones does.

Author: Sean Owen <srowen@gmail.com>

Closes #21808 from srowen/SPARK-21261.
2018-07-18 18:39:23 -05:00
maryannxue cd203e0dfc [SPARK-24163][SPARK-24164][SQL] Support column list as the pivot column in Pivot
## What changes were proposed in this pull request?

1. Extend the Parser to enable parsing a column list as the pivot column.
2. Extend the Parser and the Pivot node to enable parsing complex expressions with aliases as the pivot value.
3. Add type check and constant check in Analyzer for Pivot node.

## How was this patch tested?

Add tests in pivot.sql

Author: maryannxue <maryannxue@apache.org>

Closes #21720 from maryannxue/spark-24164.
2018-07-18 13:33:26 -07:00
韩田田00222924 002300dd41 [SPARK-24804] There are duplicate words in the test title in the DatasetSuite
## What changes were proposed in this pull request?
In DatasetSuite.scala, in the 1299 line,
test("SPARK-19896: cannot have circular references in in case class") ,
there are  duplicate words "in in".  We can get rid of one.

## How was this patch tested?

(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: 韩田田00222924 <han.tiantian@zte.com.cn>

Closes #21767 from httfighter/inin.
2018-07-18 09:40:36 -05:00
Takuya UESHIN 34cb3b54e9 [SPARK-24386][SPARK-24768][BUILD][FOLLOWUP] Fix lint-java and Scala 2.12 build.
## What changes were proposed in this pull request?

This pr fixes lint-java and Scala 2.12 build.

lint-java:

```
[ERROR] src/test/resources/log4j.properties:[0] (misc) NewlineAtEndOfFile: File does not end with a newline.
```

Scala 2.12 build:

```
[error] /.../sql/core/src/main/scala/org/apache/spark/sql/execution/streaming/continuous/ContinuousCoalesceRDD.scala:121: overloaded method value addTaskCompletionListener with alternatives:
[error]   (f: org.apache.spark.TaskContext => Unit)org.apache.spark.TaskContext <and>
[error]   (listener: org.apache.spark.util.TaskCompletionListener)org.apache.spark.TaskContext
[error]  cannot be applied to (org.apache.spark.TaskContext => java.util.List[Runnable])
[error]       context.addTaskCompletionListener { ctx =>
[error]               ^
```

## How was this patch tested?

Manually executed lint-java and Scala 2.12 build in my local environment.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #21801 from ueshin/issues/SPARK-24386_24768/fix_build.
2018-07-18 19:17:18 +08:00
Dongjoon Hyun 3b59d326c7 [SPARK-24576][BUILD] Upgrade Apache ORC to 1.5.2
## What changes were proposed in this pull request?

This issue aims to upgrade Apache ORC library from 1.4.4 to 1.5.2 in order to bring the following benefits into Apache Spark.

- [ORC-91](https://issues.apache.org/jira/browse/ORC-91) Support for variable length blocks in HDFS (The current space wasted in ORC to padding is known to be 5%.)
- [ORC-344](https://issues.apache.org/jira/browse/ORC-344) Support for using Decimal64ColumnVector

In addition to that, Apache Hive 3.1 and 3.2 will use ORC 1.5.1 ([HIVE-19669](https://issues.apache.org/jira/browse/HIVE-19465)) and 1.5.2 ([HIVE-19792](https://issues.apache.org/jira/browse/HIVE-19792)) respectively. This will improve the compatibility between Apache Spark and Apache Hive by sharing the common library.

## How was this patch tested?

Pass the Jenkins with all existing tests.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #21582 from dongjoon-hyun/SPARK-24576.
2018-07-17 23:52:17 -07:00
DB Tsai 681845fd62
[SPARK-24402][SQL] Optimize In expression when only one element in the collection or collection is empty
## What changes were proposed in this pull request?

Two new rules in the logical plan optimizers are added.

1. When there is only one element in the **`Collection`**, the
physical plan will be optimized to **`EqualTo`**, so predicate
pushdown can be used.

```scala
    profileDF.filter( $"profileID".isInCollection(Set(6))).explain(true)
    """
      |== Physical Plan ==
      |*(1) Project [profileID#0]
      |+- *(1) Filter (isnotnull(profileID#0) && (profileID#0 = 6))
      |   +- *(1) FileScan parquet [profileID#0] Batched: true, Format: Parquet,
      |     PartitionFilters: [],
      |     PushedFilters: [IsNotNull(profileID), EqualTo(profileID,6)],
      |     ReadSchema: struct<profileID:int>
    """.stripMargin
```

2. When the **`Collection`** is empty, and the input is nullable, the
logical plan will be simplified to

```scala
    profileDF.filter( $"profileID".isInCollection(Set())).explain(true)
    """
      |== Optimized Logical Plan ==
      |Filter if (isnull(profileID#0)) null else false
      |+- Relation[profileID#0] parquet
    """.stripMargin
```

TODO:

1. For multiple conditions with numbers less than certain thresholds,
we should still allow predicate pushdown.
2. Optimize the **`In`** using **`tableswitch`** or **`lookupswitch`**
when the numbers of the categories are low, and they are **`Int`**,
**`Long`**.
3. The default immutable hash trees set is slow for query, and we
should do benchmark for using different set implementation for faster
query.
4. **`filter(if (condition) null else false)`** can be optimized to false.

## How was this patch tested?

Couple new tests are added.

Author: DB Tsai <d_tsai@apple.com>

Closes #21797 from dbtsai/optimize-in.
2018-07-17 17:33:52 -07:00
Takeshi Yamamuro 2a4dd6f06c [SPARK-24681][SQL] Verify nested column names in Hive metastore
## What changes were proposed in this pull request?
This pr added code to check if nested column names do not include ',', ':', and ';' because Hive metastore can't handle these characters in nested column names;
ref: https://github.com/apache/hive/blob/release-1.2.1/serde/src/java/org/apache/hadoop/hive/serde2/typeinfo/TypeInfoUtils.java#L239

## How was this patch tested?
Added tests in `HiveDDLSuite`.

Author: Takeshi Yamamuro <yamamuro@apache.org>

Closes #21711 from maropu/SPARK-24681.
2018-07-17 14:15:30 -07:00
HanShuliang 7688ce88b2 [SPARK-21590][SS] Window start time should support negative values
## What changes were proposed in this pull request?

Remove the non-negative checks of window start time to make window support negative start time, and add a check to guarantee the absolute value of start time is less than slide duration.

## How was this patch tested?

New unit tests.

Author: HanShuliang <kevinzwx1992@gmail.com>

Closes #18903 from KevinZwx/dev.
2018-07-17 11:25:23 -05:00
Sean Owen 5215344dea [SPARK-24813][BUILD][FOLLOW-UP][HOTFIX] HiveExternalCatalogVersionsSuite still flaky; fall back to Apache archive
## What changes were proposed in this pull request?

Test HiveExternalCatalogVersionsSuite vs only current Spark releases

## How was this patch tested?

`HiveExternalCatalogVersionsSuite`

Author: Sean Owen <srowen@gmail.com>

Closes #21793 from srowen/SPARK-24813.3.
2018-07-17 11:23:34 -05:00
Marek Novotny 4cf1bec4dc [SPARK-24305][SQL][FOLLOWUP] Avoid serialization of private fields in collection expressions.
## What changes were proposed in this pull request?

The PR tries to avoid serialization of private fields of already added collection functions and follows up on comments in [SPARK-23922](https://github.com/apache/spark/pull/21028) and [SPARK-23935](https://github.com/apache/spark/pull/21236)

## How was this patch tested?

Run tests from:
- CollectionExpressionSuite.scala
- DataFrameFunctionsSuite.scala

Author: Marek Novotny <mn.mikke@gmail.com>

Closes #21352 from mn-mikke/SPARK-24305.
2018-07-17 23:07:18 +08:00
hyukjinkwon 0ca16f6e14 Revert "[SPARK-24402][SQL] Optimize In expression when only one element in the collection or collection is empty"
This reverts commit 0f0d1865f5.
2018-07-17 11:30:53 +08:00
Feng Liu d57a267b79 [SPARK-23259][SQL] Clean up legacy code around hive external catalog and HiveClientImpl
## What changes were proposed in this pull request?

Three legacy statements are removed by this patch:

- in HiveExternalCatalog: The withClient wrapper is not necessary for the private method getRawTable.

- in HiveClientImpl: There are some redundant code in both the tableExists and getTableOption method.

This PR takes over https://github.com/apache/spark/pull/20425

## How was this patch tested?

Existing tests

Closes #20425

Author: hyukjinkwon <gurwls223@apache.org>

Closes #21780 from HyukjinKwon/SPARK-23259.
2018-07-17 09:13:35 +08:00
DB Tsai 0f0d1865f5 [SPARK-24402][SQL] Optimize In expression when only one element in the collection or collection is empty
## What changes were proposed in this pull request?

Two new rules in the logical plan optimizers are added.

1. When there is only one element in the **`Collection`**, the
physical plan will be optimized to **`EqualTo`**, so predicate
pushdown can be used.

```scala
    profileDF.filter( $"profileID".isInCollection(Set(6))).explain(true)
    """
      |== Physical Plan ==
      |*(1) Project [profileID#0]
      |+- *(1) Filter (isnotnull(profileID#0) && (profileID#0 = 6))
      |   +- *(1) FileScan parquet [profileID#0] Batched: true, Format: Parquet,
      |     PartitionFilters: [],
      |     PushedFilters: [IsNotNull(profileID), EqualTo(profileID,6)],
      |     ReadSchema: struct<profileID:int>
    """.stripMargin
```

2. When the **`Collection`** is empty, and the input is nullable, the
logical plan will be simplified to

```scala
    profileDF.filter( $"profileID".isInCollection(Set())).explain(true)
    """
      |== Optimized Logical Plan ==
      |Filter if (isnull(profileID#0)) null else false
      |+- Relation[profileID#0] parquet
    """.stripMargin
```

TODO:

1. For multiple conditions with numbers less than certain thresholds,
we should still allow predicate pushdown.
2. Optimize the **`In`** using **`tableswitch`** or **`lookupswitch`**
when the numbers of the categories are low, and they are **`Int`**,
**`Long`**.
3. The default immutable hash trees set is slow for query, and we
should do benchmark for using different set implementation for faster
query.
4. **`filter(if (condition) null else false)`** can be optimized to false.

## How was this patch tested?

Couple new tests are added.

Author: DB Tsai <d_tsai@apple.com>

Closes #21442 from dbtsai/optimize-in.
2018-07-16 15:33:39 -07:00
Marek Novotny b0c95a1d69 [SPARK-23901][SQL] Removing masking functions
The PR reverts #21246.

Author: Marek Novotny <mn.mikke@gmail.com>

Closes #21786 from mn-mikke/SPARK-23901.
2018-07-16 14:28:35 -07:00
Takuya UESHIN b045315e5d [SPARK-24734][SQL] Fix type coercions and nullabilities of nested data types of some functions.
## What changes were proposed in this pull request?

We have some functions which need to aware the nullabilities of all children, such as `CreateArray`, `CreateMap`, `Concat`, and so on. Currently we add casts to fix the nullabilities, but the casts might be removed during the optimization phase.
After the discussion, we decided to not add extra casts for just fixing the nullabilities of the nested types, but handle them by functions themselves.

## How was this patch tested?

Modified and added some tests.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #21704 from ueshin/issues/SPARK-24734/concat_containsnull.
2018-07-16 23:16:25 +08:00
Yuming Wang 9549a28149 [SPARK-24549][SQL] Support Decimal type push down to the parquet data sources
## What changes were proposed in this pull request?

Support Decimal type push down to the parquet data sources.
The Decimal comparator used is: [`BINARY_AS_SIGNED_INTEGER_COMPARATOR`](c6764c4a08/parquet-column/src/main/java/org/apache/parquet/schema/PrimitiveComparator.java (L224-L292)).

## How was this patch tested?

unit tests and manual tests.

**manual tests**:
```scala
spark.range(10000000).selectExpr("id", "cast(id as decimal(9)) as d1", "cast(id as decimal(9, 2)) as d2", "cast(id as decimal(18)) as d3", "cast(id as decimal(18, 4)) as d4", "cast(id as decimal(38)) as d5", "cast(id as decimal(38, 18)) as d6").coalesce(1).write.option("parquet.block.size", 1048576).parquet("/tmp/spark/parquet/decimal")
val df = spark.read.parquet("/tmp/spark/parquet/decimal/")
spark.sql("set spark.sql.parquet.filterPushdown.decimal=true")
// Only read about 1 MB data
df.filter("d2 = 10000").show
// Only read about 1 MB data
df.filter("d4 = 10000").show
spark.sql("set spark.sql.parquet.filterPushdown.decimal=false")
// Read 174.3 MB data
df.filter("d2 = 10000").show
// Read 174.3 MB data
df.filter("d4 = 10000").show
```

Author: Yuming Wang <yumwang@ebay.com>

Closes #21556 from wangyum/SPARK-24549.
2018-07-16 15:44:51 +08:00
Maxim Gekk 9f929458fb [SPARK-24810][SQL] Fix paths to test files in AvroSuite
## What changes were proposed in this pull request?

In the PR, I propose to move `testFile()` to the common trait `SQLTestUtilsBase` and wrap test files in `AvroSuite` by the method `testFile()` which returns full paths to test files in the resource folder.

Author: Maxim Gekk <maxim.gekk@databricks.com>

Closes #21773 from MaxGekk/test-file.
2018-07-15 23:01:36 -07:00
Takeshi Yamamuro d463533ded [SPARK-24676][SQL] Project required data from CSV parsed data when column pruning disabled
## What changes were proposed in this pull request?
This pr modified code to project required data from CSV parsed data when column pruning disabled.
In the current master, an exception below happens if `spark.sql.csv.parser.columnPruning.enabled` is false. This is because required formats and CSV parsed formats are different from each other;
```
./bin/spark-shell --conf spark.sql.csv.parser.columnPruning.enabled=false
scala> val dir = "/tmp/spark-csv/csv"
scala> spark.range(10).selectExpr("id % 2 AS p", "id").write.mode("overwrite").partitionBy("p").csv(dir)
scala> spark.read.csv(dir).selectExpr("sum(p)").collect()
18/06/25 13:48:46 ERROR Executor: Exception in task 2.0 in stage 2.0 (TID 7)
java.lang.ClassCastException: org.apache.spark.unsafe.types.UTF8String cannot be cast to java.lang.Integer
        at scala.runtime.BoxesRunTime.unboxToInt(BoxesRunTime.java:101)
        at org.apache.spark.sql.catalyst.expressions.BaseGenericInternalRow$class.getInt(rows.scala:41)
        ...
```

## How was this patch tested?
Added tests in `CSVSuite`.

Author: Takeshi Yamamuro <yamamuro@apache.org>

Closes #21657 from maropu/SPARK-24676.
2018-07-15 20:22:09 -07:00
Sean Owen bbc2ffc8ab [SPARK-24813][TESTS][HIVE][HOTFIX] HiveExternalCatalogVersionsSuite still flaky; fall back to Apache archive
## What changes were proposed in this pull request?

Try only unique ASF mirrors to download Spark release; fall back to Apache archive if no mirrors available or release is not mirrored

## How was this patch tested?

Existing HiveExternalCatalogVersionsSuite

Author: Sean Owen <srowen@gmail.com>

Closes #21776 from srowen/SPARK-24813.
2018-07-16 09:29:51 +08:00
Yuming Wang 43e4e851b6 [SPARK-24718][SQL] Timestamp support pushdown to parquet data source
## What changes were proposed in this pull request?

`Timestamp` support pushdown to parquet data source.
Only `TIMESTAMP_MICROS` and `TIMESTAMP_MILLIS` support push down.

## How was this patch tested?

unit tests and benchmark tests

Author: Yuming Wang <yumwang@ebay.com>

Closes #21741 from wangyum/SPARK-24718.
2018-07-15 11:13:49 +08:00
Yuming Wang e1de34113e [SPARK-17091][SQL] Add rule to convert IN predicate to equivalent Parquet filter
## What changes were proposed in this pull request?

The original pr is: https://github.com/apache/spark/pull/18424

Add a new optimizer rule to convert an IN predicate to an equivalent Parquet filter and add `spark.sql.parquet.pushdown.inFilterThreshold` to control limit thresholds. Different data types have different limit thresholds, this is a copy of data for reference:

Type | limit threshold
-- | --
string | 370
int | 210
long | 285
double | 270
float | 220
decimal | Won't provide better performance before [SPARK-24549](https://issues.apache.org/jira/browse/SPARK-24549)

## How was this patch tested?
unit tests and manual tests

Author: Yuming Wang <yumwang@ebay.com>

Closes #21603 from wangyum/SPARK-17091.
2018-07-14 17:50:54 +08:00
Yuming Wang a75571b46f [SPARK-23831][SQL] Add org.apache.derby to IsolatedClientLoader
## What changes were proposed in this pull request?

Add `org.apache.derby` to `IsolatedClientLoader`, otherwise it may throw an exception:
```scala
...
[info] Cause: java.sql.SQLException: Failed to start database 'metastore_db' with class loader org.apache.spark.sql.hive.client.IsolatedClientLoader$$anon$12439ab23, see the next exception for details.
[info] at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
[info] at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
[info] at org.apache.derby.impl.jdbc.Util.seeNextException(Unknown Source)
[info] at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown Source)
[info] at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
[info] at org.apache.derby.jdbc.InternalDriver$1.run(Unknown Source)
...
```

## How was this patch tested?

unit tests and manual tests

Author: Yuming Wang <yumwang@ebay.com>

Closes #20944 from wangyum/SPARK-23831.
2018-07-13 14:07:52 -07:00
Liang-Chi Hsieh dfd7ac9887 [SPARK-24781][SQL] Using a reference from Dataset in Filter/Sort might not work
## What changes were proposed in this pull request?

When we use a reference from Dataset in filter or sort, which was not used in the prior select, an AnalysisException occurs, e.g.,

```scala
val df = Seq(("test1", 0), ("test2", 1)).toDF("name", "id")
df.select(df("name")).filter(df("id") === 0).show()
```

```scala
org.apache.spark.sql.AnalysisException: Resolved attribute(s) id#6 missing from name#5 in operator !Filter (id#6 = 0).;;
!Filter (id#6 = 0)
   +- AnalysisBarrier
      +- Project [name#5]
         +- Project [_1#2 AS name#5, _2#3 AS id#6]
            +- LocalRelation [_1#2, _2#3]
```
This change updates the rule `ResolveMissingReferences` so `Filter` and `Sort` with non-empty `missingInputs` will also be transformed.

## How was this patch tested?

Added tests.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #21745 from viirya/SPARK-24781.
2018-07-13 08:25:00 -07:00
Kevin Yu 0ce11d0e3a [SPARK-23486] cache the function name from the external catalog for lookupFunctions
## What changes were proposed in this pull request?

This PR will cache the function name from external catalog, it is used by lookupFunctions in the analyzer, and it is cached for each query plan. The original problem is reported in the [ spark-19737](https://issues.apache.org/jira/browse/SPARK-19737)

## How was this patch tested?

create new test file LookupFunctionsSuite and add test case in SessionCatalogSuite

Author: Kevin Yu <qyu@us.ibm.com>

Closes #20795 from kevinyu98/spark-23486.
2018-07-12 22:20:06 -07:00
maryannxue 75725057b3 [SPARK-24790][SQL] Allow complex aggregate expressions in Pivot
## What changes were proposed in this pull request?

Relax the check to allow complex aggregate expressions, like `ceil(sum(col1))` or `sum(col1) + 1`, which roughly means any aggregate expression that could appear in an Aggregate plan except pandas UDF (due to the fact that it is not supported in pivot yet).

## How was this patch tested?

Added 2 tests in pivot.sql

Author: maryannxue <maryannxue@apache.org>

Closes #21753 from maryannxue/pivot-relax-syntax.
2018-07-12 16:54:03 -07:00
Marco Gaido 11384893b6 [SPARK-24208][SQL][FOLLOWUP] Move test cases to proper locations
## What changes were proposed in this pull request?

The PR is a followup to move the test cases introduced by the original PR in their proper location.

## How was this patch tested?

moved UTs

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21751 from mgaido91/SPARK-24208_followup.
2018-07-12 15:13:26 -07:00
Dongjoon Hyun 07704c971c [SPARK-23007][SQL][TEST] Add read schema suite for file-based data sources
## What changes were proposed in this pull request?

The reader schema is said to be evolved (or projected) when it changed after the data is written. The followings are already supported in file-based data sources. Note that partition columns are not maintained in files. In this PR, `column` means `non-partition column`.

   1. Add a column
   2. Hide a column
   3. Change a column position
   4. Change a column type (upcast)

This issue aims to guarantee users a backward-compatible read-schema test coverage on file-based data sources and to prevent future regressions by *adding read schema tests explicitly*.

Here, we consider safe changes without data loss. For example, data type change should be from small types to larger types like `int`-to-`long`, not vice versa.

As of today, in the master branch, file-based data sources have the following coverage.

File Format | Coverage  | Note
----------- | ---------- | ------------------------------------------------
TEXT          | N/A            | Schema consists of a single string column.
CSV            | 1, 2, 4        |
JSON          | 1, 2, 3, 4    |
ORC            | 1, 2, 3, 4    | Native vectorized ORC reader has the widest coverage among ORC formats.
PARQUET   | 1, 2, 3        |

## How was this patch tested?

Pass the Jenkins with newly added test suites.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #20208 from dongjoon-hyun/SPARK-SCHEMA-EVOLUTION.
2018-07-12 14:08:49 -07:00
Gengliang Wang e6c6f90a55 [SPARK-24691][SQL] Dispatch the type support check in FileFormat implementation
## What changes were proposed in this pull request?

With https://github.com/apache/spark/pull/21389,  data source schema is validated on driver side before launching read/write tasks.
However,

1. Putting all the validations together in `DataSourceUtils` is tricky and hard to maintain. On second thought after review, I find that the `OrcFileFormat` in hive package is not matched, so that its validation wrong.
2.  `DataSourceUtils.verifyWriteSchema` and `DataSourceUtils.verifyReadSchema` is not supposed to be called in every file format. We can move them to some upper entry.

So, I propose we can add a new method `validateDataType` in FileFormat. File format implementation can override the method to specify its supported/non-supported data types.
Although we should focus on data source V2 API, `FileFormat` should remain workable for some time. Adding this new method should be helpful.

## How was this patch tested?

Unit test

Author: Gengliang Wang <gengliang.wang@databricks.com>

Closes #21667 from gengliangwang/refactorSchemaValidate.
2018-07-13 00:26:49 +08:00
Kazuaki Ishizaki 301bff7063 [SPARK-23914][SQL] Add array_union function
## What changes were proposed in this pull request?

The PR adds the SQL function `array_union`. The behavior of the function is based on Presto's one.

This function returns returns an array of the elements in the union of array1 and array2.

Note: The order of elements in the result is not defined.

## How was this patch tested?

Added UTs

Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com>

Closes #21061 from kiszk/SPARK-23914.
2018-07-12 17:42:29 +09:00
Kazuaki Ishizaki 5ad4735bda [SPARK-24529][BUILD][TEST-MAVEN] Add spotbugs into maven build process
## What changes were proposed in this pull request?

This PR enables a Java bytecode check tool [spotbugs](https://spotbugs.github.io/) to avoid possible integer overflow at multiplication. When an violation is detected, the build process is stopped.
Due to the tool limitation, some other checks will be enabled. In this PR, [these patterns](http://spotbugs-in-kengo-toda.readthedocs.io/en/lqc-list-detectors/detectors.html#findpuzzlers) in `FindPuzzlers` can be detected.

This check is enabled at `compile` phase. Thus, `mvn compile` or `mvn package` launches this check.

## How was this patch tested?

Existing UTs

Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com>

Closes #21542 from kiszk/SPARK-24529.
2018-07-12 09:52:23 +08:00
Maxim Gekk 3ab48f985c [SPARK-24761][SQL] Adding of isModifiable() to RuntimeConfig
## What changes were proposed in this pull request?

In the PR, I propose to extend `RuntimeConfig` by new method `isModifiable()` which returns `true` if a config parameter can be modified at runtime (for current session state). For static SQL and core parameters, the method returns `false`.

## How was this patch tested?

Added new test to `RuntimeConfigSuite` for checking Spark core and SQL parameters.

Author: Maxim Gekk <maxim.gekk@databricks.com>

Closes #21730 from MaxGekk/is-modifiable.
2018-07-11 17:38:43 -07:00
Marco Gaido e008ad1752 [SPARK-24782][SQL] Simplify conf retrieval in SQL expressions
## What changes were proposed in this pull request?

The PR simplifies the retrieval of config in `size`, as we can access them from tasks too thanks to SPARK-24250.

## How was this patch tested?

existing UTs

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21736 from mgaido91/SPARK-24605_followup.
2018-07-11 17:30:43 -07:00
Tathagata Das ff7f6ef75c [SPARK-24697][SS] Fix the reported start offsets in streaming query progress
## What changes were proposed in this pull request?

In ProgressReporter for streams, we use the `committedOffsets` as the startOffset and `availableOffsets` as the end offset when reporting the status of a trigger in `finishTrigger`. This is a bad pattern that has existed since the beginning of ProgressReporter and it is bad because its super hard to reason about when `availableOffsets` and `committedOffsets` are updated, and when they are recorded. Case in point, this bug silently existed in ContinuousExecution, since before MicroBatchExecution was refactored.

The correct fix it to record the offsets explicitly. This PR adds a simple method which is explicitly called from MicroBatch/ContinuousExecition before updating the `committedOffsets`.

## How was this patch tested?
Added new tests

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #21744 from tdas/SPARK-24697.
2018-07-11 12:44:42 -07:00
Marco Gaido ebf4bfb966 [SPARK-24208][SQL] Fix attribute deduplication for FlatMapGroupsInPandas
## What changes were proposed in this pull request?

A self-join on a dataset which contains a `FlatMapGroupsInPandas` fails because of duplicate attributes. This happens because we are not dealing with this specific case in our `dedupAttr` rules.

The PR fix the issue by adding the management of the specific case

## How was this patch tested?

added UT + manual tests

Author: Marco Gaido <marcogaido91@gmail.com>
Author: Marco Gaido <mgaido@hortonworks.com>

Closes #21737 from mgaido91/SPARK-24208.
2018-07-11 09:29:19 -07:00
Marco Gaido 592cc84583 [SPARK-24562][TESTS] Support different configs for same test in SQLQueryTestSuite
## What changes were proposed in this pull request?

The PR proposes to add support for running the same SQL test input files against different configs leading to the same result.

## How was this patch tested?

Involved UTs

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21568 from mgaido91/SPARK-24562.
2018-07-11 23:43:06 +08:00
Marek Novotny 74a8d6308b [SPARK-24165][SQL] Fixing conditional expressions to handle nullability of nested types
## What changes were proposed in this pull request?
This PR is proposing a fix for the output data type of ```If``` and ```CaseWhen``` expression. Upon till now, the implementation of exprassions has ignored nullability of nested types from different execution branches and returned the type of the first branch.

This could lead to an unwanted ```NullPointerException``` from other expressions depending on a ```If```/```CaseWhen``` expression.

Example:
```
val rows = new util.ArrayList[Row]()
rows.add(Row(true, ("a", 1)))
rows.add(Row(false, (null, 2)))
val schema = StructType(Seq(
  StructField("cond", BooleanType, false),
  StructField("s", StructType(Seq(
    StructField("val1", StringType, true),
    StructField("val2", IntegerType, false)
  )), false)
))

val df = spark.createDataFrame(rows, schema)

df
  .select(when('cond, struct(lit("x").as("val1"), lit(10).as("val2"))).otherwise('s) as "res")
  .select('res.getField("val1"))
  .show()
```
Exception:
```
Exception in thread "main" java.lang.NullPointerException
	at org.apache.spark.sql.catalyst.expressions.codegen.UnsafeWriter.write(UnsafeWriter.java:109)
	at org.apache.spark.sql.catalyst.expressions.GeneratedClass$SpecificUnsafeProjection.apply(Unknown Source)
	at org.apache.spark.sql.execution.LocalTableScanExec$$anonfun$unsafeRows$1.apply(LocalTableScanExec.scala:44)
	at org.apache.spark.sql.execution.LocalTableScanExec$$anonfun$unsafeRows$1.apply(LocalTableScanExec.scala:44)
...
```
Output schema:
```
root
 |-- res.val1: string (nullable = false)
```

## How was this patch tested?
New test cases added into
- DataFrameSuite.scala
- conditionalExpressions.scala

Author: Marek Novotny <mn.mikke@gmail.com>

Closes #21687 from mn-mikke/SPARK-24165.
2018-07-11 12:21:03 +08:00
Tathagata Das 6078b891da [SPARK-24730][SS] Add policy to choose max as global watermark when streaming query has multiple watermarks
## What changes were proposed in this pull request?

Currently, when a streaming query has multiple watermark, the policy is to choose the min of them as the global watermark. This is safe to do as the global watermark moves with the slowest stream, and is therefore is safe as it does not unexpectedly drop some data as late, etc. While this is indeed the safe thing to do, in some cases, you may want the watermark to advance with the fastest stream, that is, take the max of multiple watermarks. This PR is to add that configuration. It makes the following changes.

- Adds a configuration to specify max as the policy.
- Saves the configuration in OffsetSeqMetadata because changing it in the middle can lead to unpredictable results.
   - For old checkpoints without the configuration, it assumes the default policy as min (irrespective of the policy set at the session where the query is being restarted). This is to ensure that existing queries are affected in any way.

TODO
- [ ] Add a test for recovery from existing checkpoints.

## How was this patch tested?
New unit test

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #21701 from tdas/SPARK-24730.
2018-07-10 18:03:40 -07:00
Mukul Murthy 32cb50835e [SPARK-24662][SQL][SS] Support limit in structured streaming
## What changes were proposed in this pull request?

Support the LIMIT operator in structured streaming.

For streams in append or complete output mode, a stream with a LIMIT operator will return no more than the specified number of rows. LIMIT is still unsupported for the update output mode.

This change reverts e4fee395ec as part of it because it is a better and more complete implementation.

## How was this patch tested?

New and existing unit tests.

Author: Mukul Murthy <mukul.murthy@gmail.com>

Closes #21662 from mukulmurthy/SPARK-24662.
2018-07-10 11:08:04 -07:00
Wenchen Fan e0559f2380 [SPARK-21743][SQL][FOLLOWUP] free aggregate map when task ends
## What changes were proposed in this pull request?

This is the first follow-up of https://github.com/apache/spark/pull/21573 , which was only merged to 2.3.

This PR fixes the memory leak in another way: free the `UnsafeExternalMap` when the task ends. All the data buffers in Spark SQL are using `UnsafeExternalMap` and `UnsafeExternalSorter` under the hood, e.g. sort, aggregate, window, SMJ, etc. `UnsafeExternalSorter` registers a task completion listener to free the resource, we should apply the same thing to `UnsafeExternalMap`.

TODO in the next PR:
do not consume all the inputs when having limit in whole stage codegen.

## How was this patch tested?

existing tests

Author: Wenchen Fan <wenchen@databricks.com>

Closes #21738 from cloud-fan/limit.
2018-07-10 23:07:10 +08:00
Yuming Wang a289009567 [SPARK-24706][SQL] ByteType and ShortType support pushdown to parquet
## What changes were proposed in this pull request?

`ByteType` and `ShortType` support pushdown to parquet data source.
[Benchmark result](https://issues.apache.org/jira/browse/SPARK-24706?focusedCommentId=16528878&page=com.atlassian.jira.plugin.system.issuetabpanels%3Acomment-tabpanel#comment-16528878).

## How was this patch tested?

unit tests

Author: Yuming Wang <yumwang@ebay.com>

Closes #21682 from wangyum/SPARK-24706.
2018-07-10 15:58:14 +08:00
Xiao Li eb6e988039 [SPARK-24759][SQL] No reordering keys for broadcast hash join
## What changes were proposed in this pull request?

As the implementation of the broadcast hash join is independent of the input hash partitioning, reordering keys is not necessary. Thus, we solve this issue by simply removing the broadcast hash join from the reordering rule in EnsureRequirements.

## How was this patch tested?
N/A

Author: Xiao Li <gatorsmile@gmail.com>

Closes #21728 from gatorsmile/cleanER.
2018-07-09 14:53:14 -07:00
Xiao Li aec966b05e Revert "[SPARK-24268][SQL] Use datatype.simpleString in error messages"
This reverts commit 1bd3d61f41.
2018-07-09 14:24:23 -07:00
Marco Gaido 1bd3d61f41 [SPARK-24268][SQL] Use datatype.simpleString in error messages
## What changes were proposed in this pull request?

SPARK-22893 tried to unify error messages about dataTypes. Unfortunately, still many places were missing the `simpleString` method in other to have the same representation everywhere.

The PR unified the messages using alway the simpleString representation of the dataTypes in the messages.

## How was this patch tested?

existing/modified UTs

Author: Marco Gaido <marcogaido91@gmail.com>

Closes #21321 from mgaido91/SPARK-24268.
2018-07-09 22:59:05 +08:00
Bruce Robbins 034913b62b [SPARK-23936][SQL] Implement map_concat
## What changes were proposed in this pull request?

Implement map_concat high order function.

This implementation does not pick a winner when the specified maps have overlapping keys. Therefore, this implementation preserves existing duplicate keys in the maps and potentially introduces new duplicates (After discussion with ueshin, we settled on option 1 from [here](https://issues.apache.org/jira/browse/SPARK-23936?focusedCommentId=16464245&page=com.atlassian.jira.plugin.system.issuetabpanels%3Acomment-tabpanel#comment-16464245)).

## How was this patch tested?

New tests
Manual tests
Run all sbt SQL tests
Run all pyspark sql tests

Author: Bruce Robbins <bersprockets@gmail.com>

Closes #21073 from bersprockets/SPARK-23936.
2018-07-09 21:21:38 +09:00
Maxim Gekk 79c6689429 [SPARK-24757][SQL] Improving the error message for broadcast timeouts
## What changes were proposed in this pull request?

In the PR, I propose to provide a tip to user how to resolve the issue of timeout expiration for broadcast joins. In particular, they can increase the timeout via **spark.sql.broadcastTimeout** or disable the broadcast at all by setting **spark.sql.autoBroadcastJoinThreshold** to `-1`.

## How was this patch tested?

It tested manually from `spark-shell`:
```
scala> spark.conf.set("spark.sql.broadcastTimeout", 1)
scala> val df = spark.range(100).join(spark.range(15).as[Long].map { x =>
               Thread.sleep(5000)
               x
            }).where("id = value")
scala> df.count()
```
```
org.apache.spark.SparkException: Could not execute broadcast in 1 secs. You can increase the timeout for broadcasts via spark.sql.broadcastTimeout or disable broadcast join by setting spark.sql.autoBroadcastJoinThreshold to -1
  at org.apache.spark.sql.execution.exchange.BroadcastExchangeExec.doExecuteBroadcast(BroadcastExchangeExec.scala:150)
```

Author: Maxim Gekk <maxim.gekk@databricks.com>

Closes #21727 from MaxGekk/broadcast-timeout-error.
2018-07-07 22:16:48 +02:00
Liang-Chi Hsieh fc43690d36 [SPARK-24749][SQL] Use sameType to compare Array's element type in ArrayContains
## What changes were proposed in this pull request?

We should use `DataType.sameType` to compare element type in `ArrayContains`, otherwise nullability affects comparison result.

## How was this patch tested?

Added test.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #21724 from viirya/SPARK-24749.
2018-07-07 11:34:30 +08:00