## What changes were proposed in this pull request?
This change extends YARN resource allocation handling with blacklisting functionality.
This handles cases when node is messed up or misconfigured such that a container won't launch on it. Before this change backlisting only focused on task execution but this change introduces YarnAllocatorBlacklistTracker which tracks allocation failures per host (when enabled via "spark.yarn.blacklist.executor.launch.blacklisting.enabled").
## How was this patch tested?
### With unit tests
Including a new suite: YarnAllocatorBlacklistTrackerSuite.
#### Manually
It was tested on a cluster by deleting the Spark jars on one of the node.
#### Behaviour before these changes
Starting Spark as:
```
spark2-shell --master yarn --deploy-mode client --num-executors 4 --conf spark.executor.memory=4g --conf "spark.yarn.max.executor.failures=6"
```
Log is:
```
18/04/12 06:49:36 INFO yarn.ApplicationMaster: Final app status: FAILED, exitCode: 11, (reason: Max number of executor failures (6) reached)
18/04/12 06:49:39 INFO yarn.ApplicationMaster: Unregistering ApplicationMaster with FAILED (diag message: Max number of executor failures (6) reached)
18/04/12 06:49:39 INFO impl.AMRMClientImpl: Waiting for application to be successfully unregistered.
18/04/12 06:49:39 INFO yarn.ApplicationMaster: Deleting staging directory hdfs://apiros-1.gce.test.com:8020/user/systest/.sparkStaging/application_1523459048274_0016
18/04/12 06:49:39 INFO util.ShutdownHookManager: Shutdown hook called
```
#### Behaviour after these changes
Starting Spark as:
```
spark2-shell --master yarn --deploy-mode client --num-executors 4 --conf spark.executor.memory=4g --conf "spark.yarn.max.executor.failures=6" --conf "spark.yarn.blacklist.executor.launch.blacklisting.enabled=true"
```
And the log is:
```
18/04/13 05:37:43 INFO yarn.YarnAllocator: Will request 1 executor container(s), each with 1 core(s) and 4505 MB memory (including 409 MB of overhead)
18/04/13 05:37:43 INFO yarn.YarnAllocator: Submitted 1 unlocalized container requests.
18/04/13 05:37:43 INFO yarn.YarnAllocator: Launching container container_1523459048274_0025_01_000008 on host apiros-4.gce.test.com for executor with ID 6
18/04/13 05:37:43 INFO yarn.YarnAllocator: Received 1 containers from YARN, launching executors on 1 of them.
18/04/13 05:37:43 INFO yarn.YarnAllocator: Completed container container_1523459048274_0025_01_000007 on host: apiros-4.gce.test.com (state: COMPLETE, exit status: 1)
18/04/13 05:37:43 INFO yarn.YarnAllocatorBlacklistTracker: blacklisting host as YARN allocation failed: apiros-4.gce.test.com
18/04/13 05:37:43 INFO yarn.YarnAllocatorBlacklistTracker: adding nodes to YARN application master's blacklist: List(apiros-4.gce.test.com)
18/04/13 05:37:43 WARN yarn.YarnAllocator: Container marked as failed: container_1523459048274_0025_01_000007 on host: apiros-4.gce.test.com. Exit status: 1. Diagnostics: Exception from container-launch.
Container id: container_1523459048274_0025_01_000007
Exit code: 1
Stack trace: ExitCodeException exitCode=1:
at org.apache.hadoop.util.Shell.runCommand(Shell.java:604)
at org.apache.hadoop.util.Shell.run(Shell.java:507)
at org.apache.hadoop.util.Shell$ShellCommandExecutor.execute(Shell.java:789)
at org.apache.hadoop.yarn.server.nodemanager.DefaultContainerExecutor.launchContainer(DefaultContainerExecutor.java:213)
at org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:302)
at org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:82)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
```
Where the most important part is:
```
18/04/13 05:37:43 INFO yarn.YarnAllocatorBlacklistTracker: blacklisting host as YARN allocation failed: apiros-4.gce.test.com
18/04/13 05:37:43 INFO yarn.YarnAllocatorBlacklistTracker: adding nodes to YARN application master's blacklist: List(apiros-4.gce.test.com)
```
And execution was continued (no shutdown called).
### Testing the backlisting of the whole cluster
Starting Spark with YARN blacklisting enabled then removing a the Spark core jar one by one from all the cluster nodes. Then executing a simple spark job which fails checking the yarn log the expected exit status is contained:
```
18/06/15 01:07:10 INFO yarn.ApplicationMaster: Final app status: FAILED, exitCode: 11, (reason: Due to executor failures all available nodes are blacklisted)
18/06/15 01:07:13 INFO util.ShutdownHookManager: Shutdown hook called
```
Author: “attilapiros” <piros.attila.zsolt@gmail.com>
Closes#21068 from attilapiros/SPARK-16630.
## What changes were proposed in this pull request?
spark.blacklist.killBlacklistedExecutors is defined as
(Experimental) If set to "true", allow Spark to automatically kill, and attempt to re-create, executors when they are blacklisted. Note that, when an entire node is added to the blacklist, all of the executors on that node will be killed.
I presume the killing of blacklisted executors only happens after the stage completes successfully and all tasks have completed or on fetch failures (updateBlacklistForFetchFailure/updateBlacklistForSuccessfulTaskSet). It is confusing because the definition states that the executor will be attempted to be recreated as soon as it is blacklisted. This is not true while the stage is in progress and an executor is blacklisted, it will not attempt to cleanup until the stage finishes.
Author: Sanket Chintapalli <schintap@yahoo-inc.com>
Closes#21475 from redsanket/SPARK-24416.
There are double braces in the markdown, which break the link.
## What changes were proposed in this pull request?
(Please fill in changes proposed in this fix)
## How was this patch tested?
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: Fokko Driesprong <fokkodriesprong@godatadriven.com>
Closes#21528 from Fokko/patch-1.
## What changes were proposed in this pull request?
Introducing Python Bindings for PySpark.
- [x] Running PySpark Jobs
- [x] Increased Default Memory Overhead value
- [ ] Dependency Management for virtualenv/conda
## How was this patch tested?
This patch was tested with
- [x] Unit Tests
- [x] Integration tests with [this addition](https://github.com/apache-spark-on-k8s/spark-integration/pull/46)
```
KubernetesSuite:
- Run SparkPi with no resources
- Run SparkPi with a very long application name.
- Run SparkPi with a master URL without a scheme.
- Run SparkPi with an argument.
- Run SparkPi with custom labels, annotations, and environment variables.
- Run SparkPi with a test secret mounted into the driver and executor pods
- Run extraJVMOptions check on driver
- Run SparkRemoteFileTest using a remote data file
- Run PySpark on simple pi.py example
- Run PySpark with Python2 to test a pyfiles example
- Run PySpark with Python3 to test a pyfiles example
Run completed in 4 minutes, 28 seconds.
Total number of tests run: 11
Suites: completed 2, aborted 0
Tests: succeeded 11, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
```
Author: Ilan Filonenko <if56@cornell.edu>
Author: Ilan Filonenko <ifilondz@gmail.com>
Closes#21092 from ifilonenko/master.
## What changes were proposed in this pull request?
PR https://github.com/apache/spark/pull/20811 introduced a new Spark configuration property `spark.kubernetes.container.image.pullSecrets` for specifying image pull secrets. However, the documentation wasn't updated accordingly. This PR adds the property introduced into running-on-kubernetes.md.
## How was this patch tested?
N/A.
foxish mccheah please help merge this. Thanks!
Author: Yinan Li <ynli@google.com>
Closes#21480 from liyinan926/master.
## What changes were proposed in this pull request?
Currently we only clean up the local directories on application removed. However, when executors die and restart repeatedly, many temp files are left untouched in the local directories, which is undesired behavior and could cause disk space used up gradually.
We can detect executor death in the Worker, and clean up the non-shuffle files (files not ended with ".index" or ".data") in the local directories, we should not touch the shuffle files since they are expected to be used by the external shuffle service.
Scope of this PR is limited to only implement the cleanup logic on a Standalone cluster, we defer to experts familiar with other cluster managers(YARN/Mesos/K8s) to determine whether it's worth to add similar support.
## How was this patch tested?
Add new test suite to cover.
Author: Xingbo Jiang <xingbo.jiang@databricks.com>
Closes#21390 from jiangxb1987/cleanupNonshuffleFiles.
## What changes were proposed in this pull request?
* Adds support for local:// scheme like in k8s case for image based deployments where the jar is already in the image. Affects cluster mode and the mesos dispatcher. Covers also file:// scheme. Keeps the default case where jar resolution happens on the host.
## How was this patch tested?
Dispatcher image with the patch, use it to start DC/OS Spark service:
skonto/spark-local-disp:test
Test image with my application jar located at the root folder:
skonto/spark-local:test
Dockerfile for that image.
From mesosphere/spark:2.3.0-2.2.1-2-hadoop-2.6
COPY spark-examples_2.11-2.2.1.jar /
WORKDIR /opt/spark/dist
Tests:
The following work as expected:
* local normal example
```
dcos spark run --submit-args="--conf spark.mesos.appJar.local.resolution.mode=container --conf spark.executor.memory=1g --conf spark.mesos.executor.docker.image=skonto/spark-local:test
--conf spark.executor.cores=2 --conf spark.cores.max=8
--class org.apache.spark.examples.SparkPi local:///spark-examples_2.11-2.2.1.jar"
```
* make sure the flag does not affect other uris
```
dcos spark run --submit-args="--conf spark.mesos.appJar.local.resolution.mode=container --conf spark.executor.memory=1g --conf spark.executor.cores=2 --conf spark.cores.max=8
--class org.apache.spark.examples.SparkPi https://s3-eu-west-1.amazonaws.com/fdp-stavros-test/spark-examples_2.11-2.1.1.jar"
```
* normal example no local
```
dcos spark run --submit-args="--conf spark.executor.memory=1g --conf spark.executor.cores=2 --conf spark.cores.max=8
--class org.apache.spark.examples.SparkPi https://s3-eu-west-1.amazonaws.com/fdp-stavros-test/spark-examples_2.11-2.1.1.jar"
```
The following fails
* uses local with no setting, default is host.
```
dcos spark run --submit-args="--conf spark.executor.memory=1g --conf spark.mesos.executor.docker.image=skonto/spark-local:test
--conf spark.executor.cores=2 --conf spark.cores.max=8
--class org.apache.spark.examples.SparkPi local:///spark-examples_2.11-2.2.1.jar"
```
Author: Stavros Kontopoulos <stavros.kontopoulos@lightbend.com>
Closes#21378 from skonto/local-upstream.
## What changes were proposed in this pull request?
Added sections to pandas_udf docs, in the grouped map section, to indicate columns are assigned by position.
## How was this patch tested?
NA
Author: Bryan Cutler <cutlerb@gmail.com>
Closes#21471 from BryanCutler/arrow-doc-pandas_udf-column_by_pos-SPARK-21427.
## What changes were proposed in this pull request?
The pandas_udf functionality was introduced in 2.3.0, but is not completely stable and still evolving. This adds a label to indicate it is still an experimental API.
## How was this patch tested?
NA
Author: Bryan Cutler <cutlerb@gmail.com>
Closes#21435 from BryanCutler/arrow-pandas_udf-experimental-SPARK-24392.
## What changes were proposed in this pull request?
Spark provides four codecs: `lz4`, `lzf`, `snappy`, and `zstd`. This pr add missing shortCompressionCodecNames to configuration.
## How was this patch tested?
manually tested
Author: Yuming Wang <yumwang@ebay.com>
Closes#21431 from wangyum/SPARK-19112.
## What changes were proposed in this pull request?
uniVocity parser allows to specify only required column names or indexes for [parsing](https://www.univocity.com/pages/parsers-tutorial) like:
```
// Here we select only the columns by their indexes.
// The parser just skips the values in other columns
parserSettings.selectIndexes(4, 0, 1);
CsvParser parser = new CsvParser(parserSettings);
```
In this PR, I propose to extract indexes from required schema and pass them into the CSV parser. Benchmarks show the following improvements in parsing of 1000 columns:
```
Select 100 columns out of 1000: x1.76
Select 1 column out of 1000: x2
```
**Note**: Comparing to current implementation, the changes can return different result for malformed rows in the `DROPMALFORMED` and `FAILFAST` modes if only subset of all columns is requested. To have previous behavior, set `spark.sql.csv.parser.columnPruning.enabled` to `false`.
## How was this patch tested?
It was tested by new test which selects 3 columns out of 15, by existing tests and by new benchmarks.
Author: Maxim Gekk <maxim.gekk@databricks.com>
Author: Maxim Gekk <max.gekk@gmail.com>
Closes#21415 from MaxGekk/csv-column-pruning2.
## What changes were proposed in this pull request?
uniVocity parser allows to specify only required column names or indexes for [parsing](https://www.univocity.com/pages/parsers-tutorial) like:
```
// Here we select only the columns by their indexes.
// The parser just skips the values in other columns
parserSettings.selectIndexes(4, 0, 1);
CsvParser parser = new CsvParser(parserSettings);
```
In this PR, I propose to extract indexes from required schema and pass them into the CSV parser. Benchmarks show the following improvements in parsing of 1000 columns:
```
Select 100 columns out of 1000: x1.76
Select 1 column out of 1000: x2
```
**Note**: Comparing to current implementation, the changes can return different result for malformed rows in the `DROPMALFORMED` and `FAILFAST` modes if only subset of all columns is requested. To have previous behavior, set `spark.sql.csv.parser.columnPruning.enabled` to `false`.
## How was this patch tested?
It was tested by new test which selects 3 columns out of 15, by existing tests and by new benchmarks.
Author: Maxim Gekk <maxim.gekk@databricks.com>
Closes#21296 from MaxGekk/csv-column-pruning.
## What changes were proposed in this pull request?
This change changes spark behavior to use the correct environment variable set by Mesos in the container on startup.
Author: Jake Charland <jakec@uber.com>
Closes#18894 from jakecharland/MesosSandbox.
## What changes were proposed in this pull request?
This pr added an option `queryTimeout` for the number of seconds the the driver will wait for a Statement object to execute.
## How was this patch tested?
Added tests in `JDBCSuite`.
Author: Takeshi Yamamuro <yamamuro@apache.org>
Closes#21173 from maropu/SPARK-23856.
## What changes were proposed in this pull request?
Hadoop 3 introduces HDFS federation. This means that multiple namespaces are allowed on the same HDFS cluster. In Spark, we need to ask the delegation token for all the namenodes (for each namespace), otherwise accessing any other namespace different from the default one (for which we already fetch the delegation token) fails.
The PR adds the automatic discovery of all the namenodes related to all the namespaces available according to the configs in hdfs-site.xml.
## How was this patch tested?
manual tests in dockerized env
Author: Marco Gaido <marcogaido91@gmail.com>
Closes#21216 from mgaido91/SPARK-24149.
Instead of always throwing a generic exception when the AM fails,
print a generic error and throw the exception with the YARN
diagnostics containing the reason for the failure.
There was an issue with YARN sometimes providing a generic diagnostic
message, even though the AM provides a failure reason when
unregistering. That was happening because the AM was registering
too late, and if errors happened before the registration, YARN would
just create a generic "ExitCodeException" which wasn't very helpful.
Since most errors in this path are a result of not being able to
connect to the driver, this change modifies the AM registration
a bit so that the AM is registered before the connection to the
driver is established. That way, errors are properly propagated
through YARN back to the driver.
As part of that, I also removed the code that retried connections
to the driver from the client AM. At that point, the driver should
already be up and waiting for connections, so it's unlikely that
retrying would help - and in case it does, that means a flaky
network, which would mean problems would probably show up again.
The effect of that is that connection-related errors are reported
back to the driver much faster now (through the YARN report).
One thing to note is that there seems to be a race on the YARN
side that causes a report to be sent to the client without the
corresponding diagnostics string from the AM; the diagnostics are
available later from the RM web page. For that reason, the generic
error messages are kept in the Spark scheduler code, to help
guide users to a way of debugging their failure.
Also of note is that if YARN's max attempts configuration is lower
than Spark's, Spark will not unregister the AM with a proper
diagnostics message. Unfortunately there seems to be no way to
unregister the AM and still allow further re-attempts to happen.
Testing:
- existing unit tests
- some of our integration tests
- hardcoded an invalid driver address in the code and verified
the error in the shell. e.g.
```
scala> 18/05/04 15:09:34 ERROR cluster.YarnClientSchedulerBackend: YARN application has exited unexpectedly with state FAILED! Check the YARN application logs for more details.
18/05/04 15:09:34 ERROR cluster.YarnClientSchedulerBackend: Diagnostics message: Uncaught exception: org.apache.spark.SparkException: Exception thrown in awaitResult:
<AM stack trace>
Caused by: java.io.IOException: Failed to connect to localhost/127.0.0.1:1234
<More stack trace>
```
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#21243 from vanzin/SPARK-24182.
## What changes were proposed in this pull request?
We reverted `spark.sql.hive.convertMetastoreOrc` at https://github.com/apache/spark/pull/20536 because we should not ignore the table-specific compression conf. Now, it's resolved via [SPARK-23355](8aa1d7b0ed).
## How was this patch tested?
Pass the Jenkins.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#21186 from dongjoon-hyun/SPARK-24112.
## What changes were proposed in this pull request?
This copies the material from the spark.mllib user guide page for Naive Bayes to the spark.ml user guide page. I also improved the wording and organization slightly.
## How was this patch tested?
Built docs locally.
Author: Joseph K. Bradley <joseph@databricks.com>
Closes#21272 from jkbradley/nb-doc-update.
## What changes were proposed in this pull request?
This updates Parquet to 1.10.0 and updates the vectorized path for buffer management changes. Parquet 1.10.0 uses ByteBufferInputStream instead of byte arrays in encoders. This allows Parquet to break allocations into smaller chunks that are better for garbage collection.
## How was this patch tested?
Existing Parquet tests. Running in production at Netflix for about 3 months.
Author: Ryan Blue <blue@apache.org>
Closes#21070 from rdblue/SPARK-23972-update-parquet-to-1.10.0.
## What changes were proposed in this pull request?
In Apache Spark 2.4, [SPARK-23355](https://issues.apache.org/jira/browse/SPARK-23355) fixes a bug which ignores table properties during convertMetastore for tables created by STORED AS ORC/PARQUET.
For some Parquet tables having table properties like TBLPROPERTIES (parquet.compression 'NONE'), it was ignored by default before Apache Spark 2.4. After upgrading cluster, Spark will write uncompressed file which is different from Apache Spark 2.3 and old.
This PR adds a migration note for that.
## How was this patch tested?
N/A
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#21269 from dongjoon-hyun/SPARK-23355-DOC.
## What changes were proposed in this pull request?
This PR fixes the migration note for SPARK-23291 since it's going to backport to 2.3.1. See the discussion in https://issues.apache.org/jira/browse/SPARK-23291
## How was this patch tested?
N/A
Author: hyukjinkwon <gurwls223@apache.org>
Closes#21249 from HyukjinKwon/SPARK-23291.
## What changes were proposed in this pull request?
`from_utc_timestamp` assumes its input is in UTC timezone and shifts it to the specified timezone. When the timestamp contains timezone(e.g. `2018-03-13T06:18:23+00:00`), Spark breaks the semantic and respect the timezone in the string. This is not what user expects and the result is different from Hive/Impala. `to_utc_timestamp` has the same problem.
More details please refer to the JIRA ticket.
This PR fixes this by returning null if the input timestamp contains timezone.
## How was this patch tested?
new tests
Author: Wenchen Fan <wenchen@databricks.com>
Closes#21169 from cloud-fan/from_utc_timezone.
## What changes were proposed in this pull request?
Added support to specify the 'spark.executor.extraJavaOptions' value in terms of the `{{APP_ID}}` and/or `{{EXECUTOR_ID}}`, `{{APP_ID}}` will be replaced by Application Id and `{{EXECUTOR_ID}}` will be replaced by Executor Id while starting the executor.
## How was this patch tested?
I have verified this by checking the executor process command and gc logs. I verified the same in different deployment modes(Standalone, YARN, Mesos) client and cluster modes.
Author: Devaraj K <devaraj@apache.org>
Closes#21088 from devaraj-kavali/SPARK-24003.
## What changes were proposed in this pull request?
By default, the dynamic allocation will request enough executors to maximize the
parallelism according to the number of tasks to process. While this minimizes the
latency of the job, with small tasks this setting can waste a lot of resources due to
executor allocation overhead, as some executor might not even do any work.
This setting allows to set a ratio that will be used to reduce the number of
target executors w.r.t. full parallelism.
The number of executors computed with this setting is still fenced by
`spark.dynamicAllocation.maxExecutors` and `spark.dynamicAllocation.minExecutors`
## How was this patch tested?
Units tests and runs on various actual workloads on a Yarn Cluster
Author: Julien Cuquemelle <j.cuquemelle@criteo.com>
Closes#19881 from jcuquemelle/AddTaskPerExecutorSlot.
## What changes were proposed in this pull request?
Currently we find the wider common type by comparing the two types from left to right, this can be a problem when you have two data types which don't have a common type but each can be promoted to StringType.
For instance, if you have a table with the schema:
[c1: date, c2: string, c3: int]
The following succeeds:
SELECT coalesce(c1, c2, c3) FROM table
While the following produces an exception:
SELECT coalesce(c1, c3, c2) FROM table
This is only a issue when the seq of dataTypes contains `StringType` and all the types can do string promotion.
close#19033
## How was this patch tested?
Add test in `TypeCoercionSuite`
Author: Xingbo Jiang <xingbo.jiang@databricks.com>
Closes#21074 from jiangxb1987/typeCoercion.
## What changes were proposed in this pull request?
This PR proposes to fix `roxygen2` to `5.0.1` in `docs/README.md` for SparkR documentation generation.
If I use higher version and creates the doc, it shows the diff below. Not a big deal but it bothered me.
```diff
diff --git a/R/pkg/DESCRIPTION b/R/pkg/DESCRIPTION
index 855eb5bf77f..159fca61e06 100644
--- a/R/pkg/DESCRIPTION
+++ b/R/pkg/DESCRIPTION
-57,6 +57,6 Collate:
'types.R'
'utils.R'
'window.R'
-RoxygenNote: 5.0.1
+RoxygenNote: 6.0.1
VignetteBuilder: knitr
NeedsCompilation: no
```
## How was this patch tested?
Manually tested. I met this every time I set the new environment for Spark dev but I have kept forgetting to fix it.
Author: hyukjinkwon <gurwls223@apache.org>
Closes#21020 from HyukjinKwon/minor-r-doc.
## What changes were proposed in this pull request?
Easy fix in the documentation.
## How was this patch tested?
N/A
Closes#20948
Author: Daniel Sakuma <dsakuma@gmail.com>
Closes#20928 from dsakuma/fix_typo_configuration_docs.
## What changes were proposed in this pull request?
This PR is to finish https://github.com/apache/spark/pull/17272
This JIRA is a follow up work after SPARK-19583
As we discussed in that PR
The following DDL for a managed table with an existed default location should throw an exception:
CREATE TABLE ... (PARTITIONED BY ...) AS SELECT ...
CREATE TABLE ... (PARTITIONED BY ...)
Currently there are some situations which are not consist with above logic:
CREATE TABLE ... (PARTITIONED BY ...) succeed with an existed default location
situation: for both hive/datasource(with HiveExternalCatalog/InMemoryCatalog)
CREATE TABLE ... (PARTITIONED BY ...) AS SELECT ...
situation: hive table succeed with an existed default location
This PR is going to make above two situations consist with the logic that it should throw an exception
with an existed default location.
## How was this patch tested?
unit test added
Author: Gengliang Wang <gengliang.wang@databricks.com>
Closes#20886 from gengliangwang/pr-17272.
## What changes were proposed in this pull request?
Easy fix in the markdown.
## How was this patch tested?
jekyII build test manually.
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: lemonjing <932191671@qq.com>
Closes#20897 from Lemonjing/master.
## What changes were proposed in this pull request?
As mentioned in SPARK-23285, this PR introduces a new configuration property `spark.kubernetes.executor.cores` for specifying the physical CPU cores requested for each executor pod. This is to avoid changing the semantics of `spark.executor.cores` and `spark.task.cpus` and their role in task scheduling, task parallelism, dynamic resource allocation, etc. The new configuration property only determines the physical CPU cores available to an executor. An executor can still run multiple tasks simultaneously by using appropriate values for `spark.executor.cores` and `spark.task.cpus`.
## How was this patch tested?
Unit tests.
felixcheung srowen jiangxb1987 jerryshao mccheah foxish
Author: Yinan Li <ynli@google.com>
Author: Yinan Li <liyinan926@gmail.com>
Closes#20553 from liyinan926/master.
This change basically rewrites the security documentation so that it's
up to date with new features, more correct, and more complete.
Because security is such an important feature, I chose to move all the
relevant configuration documentation to the security page, instead of
having them peppered all over the place in the configuration page. This
allows an almost one-stop shop for security configuration in Spark. The
only exceptions are some YARN-specific minor features which I left in
the YARN page.
I also re-organized the page's topics, since they didn't make a lot of
sense. You had kerberos features described inside paragraphs talking
about UI access control, and other oddities. It should be easier now
to find information about specific Spark security features. I also
enabled TOCs for both the Security and YARN pages, since that makes it
easier to see what is covered.
I removed most of the comments from the SecurityManager javadoc since
they just replicated information in the security doc, with different
levels of out-of-dateness.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#20742 from vanzin/SPARK-23572.
## What changes were proposed in this pull request?
This PR fixes an incorrect comparison in SQL between timestamp and date. This is because both of them are casted to `string` and then are compared lexicographically. This implementation shows `false` regarding this query `spark.sql("select cast('2017-03-01 00:00:00' as timestamp) between cast('2017-02-28' as date) and cast('2017-03-01' as date)").show`.
This PR shows `true` for this query by casting `date("2017-03-01")` to `timestamp("2017-03-01 00:00:00")`.
(Please fill in changes proposed in this fix)
## How was this patch tested?
Added new UTs to `TypeCoercionSuite`.
Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com>
Closes#20774 from kiszk/SPARK-23549.
## What changes were proposed in this pull request?
Currently we allow writing data frames with empty schema into a file based datasource for certain file formats such as JSON, ORC etc. For formats such as Parquet and Text, we raise error at different times of execution. For text format, we return error from the driver early on in processing where as for format such as parquet, the error is raised from executor.
**Example**
spark.emptyDataFrame.write.format("parquet").mode("overwrite").save(path)
**Results in**
``` SQL
org.apache.parquet.schema.InvalidSchemaException: Cannot write a schema with an empty group: message spark_schema {
}
at org.apache.parquet.schema.TypeUtil$1.visit(TypeUtil.java:27)
at org.apache.parquet.schema.TypeUtil$1.visit(TypeUtil.java:37)
at org.apache.parquet.schema.MessageType.accept(MessageType.java:58)
at org.apache.parquet.schema.TypeUtil.checkValidWriteSchema(TypeUtil.java:23)
at org.apache.parquet.hadoop.ParquetFileWriter.<init>(ParquetFileWriter.java:225)
at org.apache.parquet.hadoop.ParquetOutputFormat.getRecordWriter(ParquetOutputFormat.java:342)
at org.apache.parquet.hadoop.ParquetOutputFormat.getRecordWriter(ParquetOutputFormat.java:302)
at org.apache.spark.sql.execution.datasources.parquet.ParquetOutputWriter.<init>(ParquetOutputWriter.scala:37)
at org.apache.spark.sql.execution.datasources.parquet.ParquetFileFormat$$anon$1.newInstance(ParquetFileFormat.scala:151)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$SingleDirectoryWriteTask.newOutputWriter(FileFormatWriter.scala:376)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$SingleDirectoryWriteTask.execute(FileFormatWriter.scala:387)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask$3.apply(FileFormatWriter.scala:278)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask$3.apply(FileFormatWriter.scala:276)
at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1411)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask(FileFormatWriter.scala:281)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1.apply(FileFormatWriter.scala:206)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1.apply(FileFormatWriter.scala:205)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
at org.apache.spark.scheduler.Task.run(Task.scala:109)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.
```
In this PR, we unify the error processing and raise error on attempt to write empty schema based dataframes into file based datasource (orc, parquet, text , csv, json etc) early on in the processing.
## How was this patch tested?
Unit tests added in FileBasedDatasourceSuite.
Author: Dilip Biswal <dbiswal@us.ibm.com>
Closes#20579 from dilipbiswal/spark-23372.
## What changes were proposed in this pull request?
To drop `exprId`s for `Alias` in user-facing info., this pr added an entry for `Alias` in `NonSQLExpression.sql`
## How was this patch tested?
Added tests in `UDFSuite`.
Author: Takeshi Yamamuro <yamamuro@apache.org>
Closes#20827 from maropu/SPARK-23666.
## What changes were proposed in this pull request?
Removal of the init-container for downloading remote dependencies. Built off of the work done by vanzin in an attempt to refactor driver/executor configuration elaborated in [this](https://issues.apache.org/jira/browse/SPARK-22839) ticket.
## How was this patch tested?
This patch was tested with unit and integration tests.
Author: Ilan Filonenko <if56@cornell.edu>
Closes#20669 from ifilonenko/remove-init-container.
## What changes were proposed in this pull request?
In the PR https://github.com/apache/spark/pull/20671, I forgot to update the doc about this new support.
## How was this patch tested?
N/A
Author: gatorsmile <gatorsmile@gmail.com>
Closes#20789 from gatorsmile/docUpdate.
## What changes were proposed in this pull request?
Below are the two cases.
``` SQL
case 1
scala> List.empty[String].toDF().rdd.partitions.length
res18: Int = 1
```
When we write the above data frame as parquet, we create a parquet file containing
just the schema of the data frame.
Case 2
``` SQL
scala> val anySchema = StructType(StructField("anyName", StringType, nullable = false) :: Nil)
anySchema: org.apache.spark.sql.types.StructType = StructType(StructField(anyName,StringType,false))
scala> spark.read.schema(anySchema).csv("/tmp/empty_folder").rdd.partitions.length
res22: Int = 0
```
For the 2nd case, since number of partitions = 0, we don't call the write task (the task has logic to create the empty metadata only parquet file)
The fix is to create a dummy single partition RDD and set up the write task based on it to ensure
the metadata-only file.
## How was this patch tested?
A new test is added to DataframeReaderWriterSuite.
Author: Dilip Biswal <dbiswal@us.ibm.com>
Closes#20525 from dilipbiswal/spark-23271.
## What changes were proposed in this pull request?
This PR adds a configuration to control the fallback of Arrow optimization for `toPandas` and `createDataFrame` with Pandas DataFrame.
## How was this patch tested?
Manually tested and unit tests added.
You can test this by:
**`createDataFrame`**
```python
spark.conf.set("spark.sql.execution.arrow.enabled", False)
pdf = spark.createDataFrame([[{'a': 1}]]).toPandas()
spark.conf.set("spark.sql.execution.arrow.enabled", True)
spark.conf.set("spark.sql.execution.arrow.fallback.enabled", True)
spark.createDataFrame(pdf, "a: map<string, int>")
```
```python
spark.conf.set("spark.sql.execution.arrow.enabled", False)
pdf = spark.createDataFrame([[{'a': 1}]]).toPandas()
spark.conf.set("spark.sql.execution.arrow.enabled", True)
spark.conf.set("spark.sql.execution.arrow.fallback.enabled", False)
spark.createDataFrame(pdf, "a: map<string, int>")
```
**`toPandas`**
```python
spark.conf.set("spark.sql.execution.arrow.enabled", True)
spark.conf.set("spark.sql.execution.arrow.fallback.enabled", True)
spark.createDataFrame([[{'a': 1}]]).toPandas()
```
```python
spark.conf.set("spark.sql.execution.arrow.enabled", True)
spark.conf.set("spark.sql.execution.arrow.fallback.enabled", False)
spark.createDataFrame([[{'a': 1}]]).toPandas()
```
Author: hyukjinkwon <gurwls223@gmail.com>
Closes#20678 from HyukjinKwon/SPARK-23380-conf.
## What changes were proposed in this pull request?
Seems R's substr API treats Scala substr API as zero based and so subtracts the given starting position by 1.
Because Scala's substr API also accepts zero-based starting position (treated as the first element), so the current R's substr test results are correct as they all use 1 as starting positions.
## How was this patch tested?
Modified tests.
Author: Liang-Chi Hsieh <viirya@gmail.com>
Closes#20464 from viirya/SPARK-23291.
These options were used to configure the built-in JRE SSL libraries
when downloading files from HTTPS servers. But because they were also
used to set up the now (long) removed internal HTTPS file server,
their default configuration chose convenience over security by having
overly lenient settings.
This change removes the configuration options that affect the JRE SSL
libraries. The JRE trust store can still be configured via system
properties (or globally in the JRE security config). The only lost
functionality is not being able to disable the default hostname
verifier when using spark-submit, which should be fine since Spark
itself is not using https for any internal functionality anymore.
I also removed the HTTP-related code from the REPL class loader, since
we haven't had a HTTP server for REPL-generated classes for a while.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#20723 from vanzin/SPARK-23538.
## What changes were proposed in this pull request?
If spark is run with "spark.authenticate=true", then it will fail to start in local mode.
This PR generates secret in local mode when authentication on.
## How was this patch tested?
Modified existing unit test.
Manually started spark-shell.
Author: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Closes#20652 from gaborgsomogyi/SPARK-23476.
## What changes were proposed in this pull request?
- Added clear information about triggers
- Made the semantics guarantees of watermarks more clear for streaming aggregations and stream-stream joins.
## How was this patch tested?
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: Tathagata Das <tathagata.das1565@gmail.com>
Closes#20631 from tdas/SPARK-23454.
