Commit graph

885 commits

Author SHA1 Message Date
MechCoder db2fb84b4a [SPARK-6227][MLLIB][PYSPARK] Implement PySpark wrappers for SVD and PCA (v2)
Add PCA and SVD to PySpark's wrappers for `RowMatrix` and `IndexedRowMatrix` (SVD only).

Based on #7963, updated.

## How was this patch tested?

New doc tests and unit tests. Ran all examples locally.

Author: MechCoder <manojkumarsivaraj334@gmail.com>
Author: Nick Pentreath <nickp@za.ibm.com>

Closes #17621 from MLnick/SPARK-6227-pyspark-svd-pca.
2017-05-03 10:58:05 +02:00
Yuhao Yang add9d1bba5 [SPARK-19791][ML] Add doc and example for fpgrowth
## What changes were proposed in this pull request?

Add a new section for fpm
Add Example for FPGrowth in scala and Java

updated: Rewrite transform to be more compact.

## How was this patch tested?

local doc generation.

Author: Yuhao Yang <yuhao.yang@intel.com>

Closes #17130 from hhbyyh/fpmdoc.
2017-04-29 10:51:45 -07:00
Josh Rosen f44c8a843c [SPARK-20453] Bump master branch version to 2.3.0-SNAPSHOT
This patch bumps the master branch version to `2.3.0-SNAPSHOT`.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #17753 from JoshRosen/SPARK-20453.
2017-04-24 21:48:04 -07:00
zero323 702d85af2d [SPARK-20208][R][DOCS] Document R fpGrowth support
## What changes were proposed in this pull request?

Document  fpGrowth in:

- vignettes
- programming guide
- code example

## How was this patch tested?

Manual tests.

Author: zero323 <zero323@users.noreply.github.com>

Closes #17557 from zero323/SPARK-20208.
2017-04-18 19:59:18 -07:00
Tathagata Das 74aa0df8f7 [SPARK-20377][SS] Fix JavaStructuredSessionization example
## What changes were proposed in this pull request?

Extra accessors in java bean class causes incorrect encoder generation, which corrupted the state when using timeouts.

## How was this patch tested?
manually ran the example

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #17676 from tdas/SPARK-20377.
2017-04-18 16:10:40 -07:00
hyukjinkwon bca4259f12 [MINOR][DOCS] JSON APIs related documentation fixes
## What changes were proposed in this pull request?

This PR proposes corrections related to JSON APIs as below:

- Rendering links in Python documentation
- Replacing `RDD` to `Dataset` in programing guide
- Adding missing description about JSON Lines consistently in `DataFrameReader.json` in Python API
- De-duplicating little bit of `DataFrameReader.json` in Scala/Java API

## How was this patch tested?

Manually build the documentation via `jekyll build`. Corresponding snapstops will be left on the codes.

Note that currently there are Javadoc8 breaks in several places. These are proposed to be handled in https://github.com/apache/spark/pull/17477. So, this PR does not fix those.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #17602 from HyukjinKwon/minor-json-documentation.
2017-04-12 09:16:39 +01:00
Sean Owen a26e3ed5e4 [SPARK-20156][CORE][SQL][STREAMING][MLLIB] Java String toLowerCase "Turkish locale bug" causes Spark problems
## What changes were proposed in this pull request?

Add Locale.ROOT to internal calls to String `toLowerCase`, `toUpperCase`, to avoid inadvertent locale-sensitive variation in behavior (aka the "Turkish locale problem").

The change looks large but it is just adding `Locale.ROOT` (the locale with no country or language specified) to every call to these methods.

## How was this patch tested?

Existing tests.

Author: Sean Owen <sowen@cloudera.com>

Closes #17527 from srowen/SPARK-20156.
2017-04-10 20:11:56 +01:00
asmith26 34fc48fb59 [MINOR] Issue: Change "slice" vs "partition" in exception messages (and code?)
## What changes were proposed in this pull request?

Came across the term "slice" when running some spark scala code. Consequently, a Google search indicated that "slices" and "partitions" refer to the same things; indeed see:

- [This issue](https://issues.apache.org/jira/browse/SPARK-1701)
- [This pull request](https://github.com/apache/spark/pull/2305)
- [This StackOverflow answer](http://stackoverflow.com/questions/23436640/what-is-the-difference-between-an-rdd-partition-and-a-slice) and [this one](http://stackoverflow.com/questions/24269495/what-are-the-differences-between-slices-and-partitions-of-rdds)

Thus this pull request fixes the occurrence of slice I came accross. Nonetheless, [it would appear](https://github.com/apache/spark/search?utf8=%E2%9C%93&q=slice&type=) there are still many references to "slice/slices" - thus I thought I'd raise this Pull Request to address the issue (sorry if this is the wrong place, I'm not too familar with raising apache issues).

## How was this patch tested?

(Not tested locally - only a minor exception message change.)

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: asmith26 <asmith26@users.noreply.github.com>

Closes #17565 from asmith26/master.
2017-04-09 07:47:23 +01:00
actuaryzhang 1ad73f0a21 [SPARK-20258][DOC][SPARKR] Fix SparkR logistic regression example in programming guide (did not converge)
## What changes were proposed in this pull request?

SparkR logistic regression example did not converge in programming guide (for IRWLS). All estimates are essentially zero:

```
training2 <- read.df("data/mllib/sample_binary_classification_data.txt", source = "libsvm")
df_list2 <- randomSplit(training2, c(7,3), 2)
binomialDF <- df_list2[[1]]
binomialTestDF <- df_list2[[2]]
binomialGLM <- spark.glm(binomialDF, label ~ features, family = "binomial")

17/04/07 11:42:03 WARN WeightedLeastSquares: Cholesky solver failed due to singular covariance matrix. Retrying with Quasi-Newton solver.

> summary(binomialGLM)

Coefficients:
                 Estimate
(Intercept)    9.0255e+00
features_0     0.0000e+00
features_1     0.0000e+00
features_2     0.0000e+00
features_3     0.0000e+00
features_4     0.0000e+00
features_5     0.0000e+00
features_6     0.0000e+00
features_7     0.0000e+00
```

Author: actuaryzhang <actuaryzhang10@gmail.com>

Closes #17571 from actuaryzhang/programGuide2.
2017-04-07 12:29:45 -07:00
actuaryzhang 870b9d9aa0 [SPARK-20026][DOC][SPARKR] Add Tweedie example for SparkR in programming guide
## What changes were proposed in this pull request?
Add Tweedie example for SparkR in programming guide.
The doc was already updated in #17103.

Author: actuaryzhang <actuaryzhang10@gmail.com>

Closes #17553 from actuaryzhang/programGuide.
2017-04-07 10:57:12 -07:00
Dustin Koupal 8129d59d0e [MINOR][DOCS] Fix typo in Hive Examples
## What changes were proposed in this pull request?

Fix typo in hive examples from "DaraFrames" to "DataFrames"

## How was this patch tested?

N/A

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: Dustin Koupal <dkoupal@blizzard.com>

Closes #17554 from cooper6581/typo-daraframes.
2017-04-06 16:56:36 -07:00
Tathagata Das 9543fc0e08 [SPARK-20224][SS] Updated docs for streaming dropDuplicates and mapGroupsWithState
## What changes were proposed in this pull request?

- Fixed bug in Java API not passing timeout conf to scala API
- Updated markdown docs
- Updated scala docs
- Added scala and Java example

## How was this patch tested?
Manually ran examples.

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #17539 from tdas/SPARK-20224.
2017-04-05 16:03:04 -07:00
Yuhao Yang 4d28e8430d [SPARK-19969][ML] Imputer doc and example
## What changes were proposed in this pull request?

Add docs and examples for spark.ml.feature.Imputer. Currently scala and Java examples are included. Python example will be added after https://github.com/apache/spark/pull/17316

## How was this patch tested?

local doc generation and example execution

Author: Yuhao Yang <yuhao.yang@intel.com>

Closes #17324 from hhbyyh/imputerdoc.
2017-04-03 11:42:33 +02:00
Jacek Laskowski 0197262a35 [DOCS] Docs-only improvements
…adoc

## What changes were proposed in this pull request?

Use recommended values for row boundaries in Window's scaladoc, i.e. `Window.unboundedPreceding`, `Window.unboundedFollowing`, and `Window.currentRow` (that were introduced in 2.1.0).

## How was this patch tested?

Local build

Author: Jacek Laskowski <jacek@japila.pl>

Closes #17417 from jaceklaskowski/window-expression-scaladoc.
2017-03-30 16:07:27 +01:00
wm624@hotmail.com 471de5db53 [MINOR][SPARKR] Add run command comment in examples
## What changes were proposed in this pull request?

There are two examples in r folder missing the run commands.

In this PR, I just add the missing comment, which is consistent with other examples.

## How was this patch tested?

Manual test.

Author: wm624@hotmail.com <wm624@hotmail.com>

Closes #17474 from wangmiao1981/stat.
2017-03-29 21:38:26 -07:00
sureshthalamati c791180705 [SPARK-10849][SQL] Adds option to the JDBC data source write for user to specify database column type for the create table
## What changes were proposed in this pull request?
Currently JDBC data source creates tables in the target database using the default type mapping, and the JDBC dialect mechanism.  If users want to specify different database data type for only some of columns, there is no option available. In scenarios where default mapping does not work, users are forced to create tables on the target database before writing. This workaround is probably not acceptable from a usability point of view. This PR is to provide a user-defined type mapping for specific columns.

The solution is to allow users to specify database column data type for the create table  as JDBC datasource option(createTableColumnTypes) on write. Data type information can be specified in the same format as table schema DDL format (e.g: `name CHAR(64), comments VARCHAR(1024)`).

All supported target database types can not be specified ,  the data types has to be valid spark sql data types also.  For example user can not specify target database  CLOB data type. This will be supported in the follow-up PR.

Example:
```Scala
df.write
.option("createTableColumnTypes", "name CHAR(64), comments VARCHAR(1024)")
.jdbc(url, "TEST.DBCOLTYPETEST", properties)
```
## How was this patch tested?
Added new test cases to the JDBCWriteSuite

Author: sureshthalamati <suresh.thalamati@gmail.com>

Closes #16209 from sureshthalamati/jdbc_custom_dbtype_option_json-spark-10849.
2017-03-23 17:39:33 -07:00
Nick Pentreath 9cca3dbf4a [SPARK-19345][ML][DOC] Add doc for "coldStartStrategy" usage in ALS
[SPARK-14489](https://issues.apache.org/jira/browse/SPARK-14489) added the ability to skip `NaN` predictions during `ALSModel.transform`. This PR adds documentation for the `coldStartStrategy` param to the ALS user guide, and add code to the examples to illustrate usage.

## How was this patch tested?

Doc and example change only. Build HTML doc locally and verified example code builds, and runs in shell for Scala/Python.

Author: Nick Pentreath <nickp@za.ibm.com>

Closes #17102 from MLnick/SPARK-19345-coldstart-doc.
2017-03-02 15:51:16 +02:00
Yun Ni 3bd8ddf7c3 [MINOR][ML] Fix comments in LSH Examples and Python API
## What changes were proposed in this pull request?
Remove `org.apache.spark.examples.` in
Add slash in one of the python doc.

## How was this patch tested?
Run examples using the commands in the comments.

Author: Yun Ni <yunn@uber.com>

Closes #17104 from Yunni/yunn_minor.
2017-03-01 22:55:13 -08:00
wm624@hotmail.com 89cd3845b6 [SPARK-19460][SPARKR] Update dataset used in R documentation, examples to reduce warning noise and confusions
## What changes were proposed in this pull request?

Replace `iris` dataset with `Titanic` or other dataset in example and document.

## How was this patch tested?

Manual and existing test

Author: wm624@hotmail.com <wm624@hotmail.com>

Closes #17032 from wangmiao1981/example.
2017-02-28 22:31:35 -08:00
hyukjinkwon 8a5a58506c [SPARK-15615][SQL][BUILD][FOLLOW-UP] Replace deprecated usage of json(RDD[String]) API
## What changes were proposed in this pull request?

This PR proposes to replace the deprecated `json(RDD[String])` usage to `json(Dataset[String])`.

This currently produces so many warnings.

## How was this patch tested?

Fixed tests.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #17071 from HyukjinKwon/SPARK-15615-followup.
2017-02-27 14:33:02 -08:00
hyukjinkwon 4ba9c6c453 [MINOR][BUILD] Fix lint-java breaks in Java
## What changes were proposed in this pull request?

This PR proposes to fix the lint-breaks as below:

```
[ERROR] src/test/java/org/apache/spark/network/TransportResponseHandlerSuite.java:[29,8] (imports) UnusedImports: Unused import - org.apache.spark.network.buffer.ManagedBuffer.
[ERROR] src/main/java/org/apache/spark/unsafe/types/UTF8String.java:[156,10] (modifier) ModifierOrder: 'Nonnull' annotation modifier does not precede non-annotation modifiers.
[ERROR] src/main/java/org/apache/spark/SparkFirehoseListener.java:[122] (sizes) LineLength: Line is longer than 100 characters (found 105).
[ERROR] src/main/java/org/apache/spark/util/collection/unsafe/sort/UnsafeExternalSorter.java:[164,78] (coding) OneStatementPerLine: Only one statement per line allowed.
[ERROR] src/test/java/test/org/apache/spark/JavaAPISuite.java:[1157] (sizes) LineLength: Line is longer than 100 characters (found 121).
[ERROR] src/test/java/org/apache/spark/streaming/JavaMapWithStateSuite.java:[149] (sizes) LineLength: Line is longer than 100 characters (found 113).
[ERROR] src/test/java/test/org/apache/spark/streaming/Java8APISuite.java:[146] (sizes) LineLength: Line is longer than 100 characters (found 122).
[ERROR] src/test/java/test/org/apache/spark/streaming/JavaAPISuite.java:[32,8] (imports) UnusedImports: Unused import - org.apache.spark.streaming.Time.
[ERROR] src/test/java/test/org/apache/spark/streaming/JavaAPISuite.java:[611] (sizes) LineLength: Line is longer than 100 characters (found 101).
[ERROR] src/test/java/test/org/apache/spark/streaming/JavaAPISuite.java:[1317] (sizes) LineLength: Line is longer than 100 characters (found 102).
[ERROR] src/test/java/test/org/apache/spark/sql/JavaDatasetAggregatorSuite.java:[91] (sizes) LineLength: Line is longer than 100 characters (found 102).
[ERROR] src/test/java/test/org/apache/spark/sql/JavaDatasetSuite.java:[113] (sizes) LineLength: Line is longer than 100 characters (found 101).
[ERROR] src/test/java/test/org/apache/spark/sql/JavaDatasetSuite.java:[164] (sizes) LineLength: Line is longer than 100 characters (found 110).
[ERROR] src/test/java/test/org/apache/spark/sql/JavaDatasetSuite.java:[212] (sizes) LineLength: Line is longer than 100 characters (found 114).
[ERROR] src/test/java/org/apache/spark/mllib/tree/JavaDecisionTreeSuite.java:[36] (sizes) LineLength: Line is longer than 100 characters (found 101).
[ERROR] src/main/java/org/apache/spark/examples/streaming/JavaKinesisWordCountASL.java:[26,8] (imports) UnusedImports: Unused import - com.amazonaws.regions.RegionUtils.
[ERROR] src/test/java/org/apache/spark/streaming/kinesis/JavaKinesisStreamSuite.java:[20,8] (imports) UnusedImports: Unused import - com.amazonaws.regions.RegionUtils.
[ERROR] src/test/java/org/apache/spark/streaming/kinesis/JavaKinesisStreamSuite.java:[94] (sizes) LineLength: Line is longer than 100 characters (found 103).
[ERROR] src/main/java/org/apache/spark/examples/ml/JavaTokenizerExample.java:[30,8] (imports) UnusedImports: Unused import - org.apache.spark.sql.api.java.UDF1.
[ERROR] src/main/java/org/apache/spark/examples/ml/JavaTokenizerExample.java:[72] (sizes) LineLength: Line is longer than 100 characters (found 104).
[ERROR] src/main/java/org/apache/spark/examples/mllib/JavaRankingMetricsExample.java:[121] (sizes) LineLength: Line is longer than 100 characters (found 101).
[ERROR] src/main/java/org/apache/spark/examples/sql/JavaSQLDataSourceExample.java:[28,8] (imports) UnusedImports: Unused import - org.apache.spark.api.java.JavaRDD.
[ERROR] src/main/java/org/apache/spark/examples/sql/JavaSQLDataSourceExample.java:[29,8] (imports) UnusedImports: Unused import - org.apache.spark.api.java.JavaSparkContext.
```

## How was this patch tested?

Manually via

```bash
./dev/lint-java
```

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #17072 from HyukjinKwon/java-lint.
2017-02-27 08:44:26 +00:00
Boaz Mohar 061bcfb869 [MINOR][DOCS] Fixes two problems in the SQL programing guide page
## What changes were proposed in this pull request?

Removed duplicated lines in sql python example and found a typo.

## How was this patch tested?

Searched for other typo's in the page to minimize PR's.

Author: Boaz Mohar <boazmohar@gmail.com>

Closes #17066 from boazmohar/doc-fix.
2017-02-25 11:32:09 -08:00
Yuhao Yang 280afe0ef3 [SPARK-19337][ML][DOC] Documentation and examples for LinearSVC
## What changes were proposed in this pull request?

Documentation and examples (Java, scala, python, R) for LinearSVC

## How was this patch tested?
local doc generation

Author: Yuhao Yang <yuhao.yang@intel.com>

Closes #16968 from hhbyyh/mlsvmdoc.
2017-02-21 09:38:14 -08:00
Sean Owen de14d35f77
[SPARK-19533][EXAMPLES] Convert Java tests to use lambdas, Java 8 features
## What changes were proposed in this pull request?

Convert Java tests to use lambdas, Java 8 features.

## How was this patch tested?

Jenkins tests.

Author: Sean Owen <sowen@cloudera.com>

Closes #16961 from srowen/SPARK-19533.
2017-02-19 09:37:56 -08:00
wm624@hotmail.com 8b57ea4a1e [SPARK-19639][SPARKR][EXAMPLE] Add spark.svmLinear example and update vignettes
## What changes were proposed in this pull request?

We recently add the spark.svmLinear API for SparkR. We need to add an example and update the vignettes.

## How was this patch tested?

Manually run example.

Author: wm624@hotmail.com <wm624@hotmail.com>

Closes #16969 from wangmiao1981/example.
2017-02-17 21:21:10 -08:00
Felix Cheung 988f6d7ee8 [SPARKR][EXAMPLES] update examples to stop spark session
## What changes were proposed in this pull request?

stop session at end of example

## How was this patch tested?

manual

Author: Felix Cheung <felixcheung_m@hotmail.com>

Closes #16973 from felixcheung/rexamples.
2017-02-17 13:30:55 -08:00
Sean Owen 0e2405490f
[SPARK-19550][BUILD][CORE][WIP] Remove Java 7 support
- Move external/java8-tests tests into core, streaming, sql and remove
- Remove MaxPermGen and related options
- Fix some reflection / TODOs around Java 8+ methods
- Update doc references to 1.7/1.8 differences
- Remove Java 7/8 related build profiles
- Update some plugins for better Java 8 compatibility
- Fix a few Java-related warnings

For the future:

- Update Java 8 examples to fully use Java 8
- Update Java tests to use lambdas for simplicity
- Update Java internal implementations to use lambdas

## How was this patch tested?

Existing tests

Author: Sean Owen <sowen@cloudera.com>

Closes #16871 from srowen/SPARK-19493.
2017-02-16 12:32:45 +00:00
Yun Ni 08c1972a06 [SPARK-18080][ML][PYTHON] Python API & Examples for Locality Sensitive Hashing
## What changes were proposed in this pull request?
This pull request includes python API and examples for LSH. The API changes was based on yanboliang 's PR #15768 and resolved conflicts and API changes on the Scala API. The examples are consistent with Scala examples of MinHashLSH and BucketedRandomProjectionLSH.

## How was this patch tested?
API and examples are tested using spark-submit:
`bin/spark-submit examples/src/main/python/ml/min_hash_lsh.py`
`bin/spark-submit examples/src/main/python/ml/bucketed_random_projection_lsh.py`

User guide changes are generated and manually inspected:
`SKIP_API=1 jekyll build`

Author: Yun Ni <yunn@uber.com>
Author: Yanbo Liang <ybliang8@gmail.com>
Author: Yunni <Euler57721@gmail.com>

Closes #16715 from Yunni/spark-18080.
2017-02-15 16:26:05 -08:00
Xiao Li 855a1b7551
[SPARK-19574][ML][DOCUMENTATION] Fix Liquid Exception: Start indices amount is not equal to end indices amount
### What changes were proposed in this pull request?
```
Liquid Exception: Start indices amount is not equal to end indices amount, see /Users/xiao/IdeaProjects/sparkDelivery/docs/../examples/src/main/java/org/apache/spark/examples/ml/JavaTokenizerExample.java. in ml-features.md
```

So far, the build is broken after merging https://github.com/apache/spark/pull/16789

This PR is to fix it.

## How was this patch tested?
Manual

Author: Xiao Li <gatorsmile@gmail.com>

Closes #16908 from gatorsmile/docMLFix.
2017-02-13 11:18:31 +00:00
Aseem Bansal aee2bd2c7e
[SPARK-19444][ML][DOCUMENTATION] Fix imports not being present in documentation
## What changes were proposed in this pull request?

SPARK-19444 imports not being present in documentation

## How was this patch tested?

Manual

## Disclaimer

Contribution is original work and I license the work to the project under the project’s open source license

Author: Aseem Bansal <anshbansal@users.noreply.github.com>

Closes #16789 from anshbansal/patch-1.
2017-02-07 11:44:14 +00:00
krishnakalyan3 48aafeda7d [SPARK-19386][SPARKR][DOC] Bisecting k-means in SparkR documentation
## What changes were proposed in this pull request?
Update programming guide, example and vignette with Bisecting k-means.

Author: krishnakalyan3 <krishnakalyan3@gmail.com>

Closes #16767 from krishnakalyan3/bisecting-kmeans.
2017-02-03 12:19:47 -08:00
aokolnychyi 3fdce81434 [SPARK-16046][DOCS] Aggregations in the Spark SQL programming guide
## What changes were proposed in this pull request?

- A separate subsection for Aggregations under “Getting Started” in the Spark SQL programming guide. It mentions which aggregate functions are predefined and how users can create their own.
- Examples of using the `UserDefinedAggregateFunction` abstract class for untyped aggregations in Java and Scala.
- Examples of using the `Aggregator` abstract class for type-safe aggregations in Java and Scala.
- Python is not covered.
- The PR might not resolve the ticket since I do not know what exactly was planned by the author.

In total, there are four new standalone examples that can be executed via `spark-submit` or `run-example`. The updated Spark SQL programming guide references to these examples and does not contain hard-coded snippets.

## How was this patch tested?

The patch was tested locally by building the docs. The examples were run as well.

![image](https://cloud.githubusercontent.com/assets/6235869/21292915/04d9d084-c515-11e6-811a-999d598dffba.png)

Author: aokolnychyi <okolnychyyanton@gmail.com>

Closes #16329 from aokolnychyi/SPARK-16046.
2017-01-24 22:13:17 -08:00
uncleGen eefdf9f9dd
[SPARK-19227][SPARK-19251] remove unused imports and outdated comments
## What changes were proposed in this pull request?
remove ununsed imports and outdated comments, and fix some minor code style issue.

## How was this patch tested?
existing ut

Author: uncleGen <hustyugm@gmail.com>

Closes #16591 from uncleGen/SPARK-19227.
2017-01-18 09:44:32 +00:00
Yanbo Liang 2c586f506d [SPARK-19158][SPARKR][EXAMPLES] Fix ml.R example fails due to lack of e1071 package.
## What changes were proposed in this pull request?
```ml.R``` example depends on ```e1071``` package, if it's not available in users' environment, it will fail. I think the example should not depends on third-party packages, so I update it to remove the dependency.

## How was this patch tested?
Manual test.

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #16548 from yanboliang/spark-19158.
2017-01-12 00:58:30 -08:00
hyukjinkwon b0e5840d4b [SPARK-19134][EXAMPLE] Fix several sql, mllib and status api examples not working
## What changes were proposed in this pull request?

**binary_classification_metrics_example.py**

LibSVM datasource loads `ml.linalg.SparseVector` whereas the example requires it to be `mllib.linalg.SparseVector`.  For the equivalent Scala exmaple, `BinaryClassificationMetricsExample.scala` seems fine.

```
./bin/spark-submit examples/src/main/python/mllib/binary_classification_metrics_example.py
```

```
  File ".../spark/examples/src/main/python/mllib/binary_classification_metrics_example.py", line 39, in <lambda>
    .rdd.map(lambda row: LabeledPoint(row[0], row[1]))
  File ".../spark/python/pyspark/mllib/regression.py", line 54, in __init__
    self.features = _convert_to_vector(features)
  File ".../spark/python/pyspark/mllib/linalg/__init__.py", line 80, in _convert_to_vector
    raise TypeError("Cannot convert type %s into Vector" % type(l))
TypeError: Cannot convert type <class 'pyspark.ml.linalg.SparseVector'> into Vector
```

**status_api_demo.py** (this one does not work on Python 3.4.6)

It's `queue` in Python 3+.

```
PYSPARK_PYTHON=python3 ./bin/spark-submit examples/src/main/python/status_api_demo.py
```

```
Traceback (most recent call last):
  File ".../spark/examples/src/main/python/status_api_demo.py", line 22, in <module>
    import Queue
ImportError: No module named 'Queue'
```

**bisecting_k_means_example.py**

`BisectingKMeansModel` does not implement `save` and `load` in Python.

```bash
./bin/spark-submit examples/src/main/python/mllib/bisecting_k_means_example.py
```

```
Traceback (most recent call last):
  File ".../spark/examples/src/main/python/mllib/bisecting_k_means_example.py", line 46, in <module>
    model.save(sc, path)
AttributeError: 'BisectingKMeansModel' object has no attribute 'save'
```

**elementwise_product_example.py**

It calls `collect` from the vector.

```bash
./bin/spark-submit examples/src/main/python/mllib/elementwise_product_example.py
```

```
Traceback (most recent call last):
  File ".../spark/examples/src/main/python/mllib/elementwise_product_example.py", line 48, in <module>
    for each in transformedData2.collect():
  File ".../spark/python/pyspark/mllib/linalg/__init__.py", line 478, in __getattr__
    return getattr(self.array, item)
AttributeError: 'numpy.ndarray' object has no attribute 'collect'
```

**These three tests look throwing an exception for a relative path set in `spark.sql.warehouse.dir`.**

**hive.py**

```
./bin/spark-submit examples/src/main/python/sql/hive.py
```

```
Traceback (most recent call last):
  File ".../spark/examples/src/main/python/sql/hive.py", line 47, in <module>
    spark.sql("CREATE TABLE IF NOT EXISTS src (key INT, value STRING) USING hive")
  File ".../spark/python/lib/pyspark.zip/pyspark/sql/session.py", line 541, in sql
  File ".../spark/python/lib/py4j-0.10.4-src.zip/py4j/java_gateway.py", line 1133, in __call__
  File ".../spark/python/lib/pyspark.zip/pyspark/sql/utils.py", line 69, in deco
pyspark.sql.utils.AnalysisException: 'org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: java.net.URISyntaxException: Relative path in absolute URI: file:./spark-warehouse);'
```

**SparkHiveExample.scala**

```
./bin/run-example sql.hive.SparkHiveExample
```

```
Exception in thread "main" org.apache.hadoop.hive.ql.metadata.HiveException: Unable to alter table. java.lang.IllegalArgumentException: java.net.URISyntaxException: Relative path in absolute URI: file:./spark-warehouse
	at org.apache.hadoop.hive.ql.metadata.Hive.alterTable(Hive.java:498)
	at org.apache.hadoop.hive.ql.metadata.Hive.alterTable(Hive.java:484)
	at org.apache.hadoop.hive.ql.metadata.Hive.loadTable(Hive.java:1668)
```

**JavaSparkHiveExample.java**

```
./bin/run-example sql.hive.JavaSparkHiveExample
```

```
Exception in thread "main" org.apache.hadoop.hive.ql.metadata.HiveException: Unable to alter table. java.lang.IllegalArgumentException: java.net.URISyntaxException: Relative path in absolute URI: file:./spark-warehouse
	at org.apache.hadoop.hive.ql.metadata.Hive.alterTable(Hive.java:498)
	at org.apache.hadoop.hive.ql.metadata.Hive.alterTable(Hive.java:484)
	at org.apache.hadoop.hive.ql.metadata.Hive.loadTable(Hive.java:1668)
```

## How was this patch tested?

Manually via

```
./bin/spark-submit examples/src/main/python/mllib/binary_classification_metrics_example.py
```

```
PYSPARK_PYTHON=python3 ./bin/spark-submit examples/src/main/python/status_api_demo.py
```

```
./bin/spark-submit examples/src/main/python/mllib/bisecting_k_means_example.py
```

```
./bin/spark-submit examples/src/main/python/mllib/elementwise_product_example.py
```

```
./bin/spark-submit examples/src/main/python/sql/hive.py
```

```
./bin/run-example sql.hive.JavaSparkHiveExample
```

```
./bin/run-example sql.hive.SparkHiveExample
```

These were found via

```bash
find ./examples/src/main/python -name "*.py" -exec spark-submit {} \;
```

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #16515 from HyukjinKwon/minor-example-fix.
2017-01-10 02:18:07 -08:00
Wenchen Fan cca945b6aa [SPARK-18885][SQL] unify CREATE TABLE syntax for data source and hive serde tables
## What changes were proposed in this pull request?

Today we have different syntax to create data source or hive serde tables, we should unify them to not confuse users and step forward to make hive a data source.

Please read https://issues.apache.org/jira/secure/attachment/12843835/CREATE-TABLE.pdf for  details.

TODO(for follow-up PRs):
1. TBLPROPERTIES is not added to the new syntax, we should decide if we wanna add it later.
2. `SHOW CREATE TABLE` should be updated to use the new syntax.
3. we should decide if we wanna change the behavior of `SET LOCATION`.

## How was this patch tested?

new tests

Author: Wenchen Fan <wenchen@databricks.com>

Closes #16296 from cloud-fan/create-table.
2017-01-05 17:40:27 -08:00
Niranjan Padmanabhan a1e40b1f5d
[MINOR][DOCS] Remove consecutive duplicated words/typo in Spark Repo
## What changes were proposed in this pull request?
There are many locations in the Spark repo where the same word occurs consecutively. Sometimes they are appropriately placed, but many times they are not. This PR removes the inappropriately duplicated words.

## How was this patch tested?
N/A since only docs or comments were updated.

Author: Niranjan Padmanabhan <niranjan.padmanabhan@gmail.com>

Closes #16455 from neurons/np.structure_streaming_doc.
2017-01-04 15:07:29 +00:00
Weiqing Yang e5c307c50a
[MINOR] Add missing sc.stop() to end of examples
## What changes were proposed in this pull request?

Add `finally` clause for `sc.stop()` in the `test("register and deregister Spark listener from SparkContext")`.

## How was this patch tested?
Pass the build and unit tests.

Author: Weiqing Yang <yangweiqing001@gmail.com>

Closes #16426 from weiqingy/testIssue.
2017-01-03 09:56:42 +00:00
hyukjinkwon 46b2126024
[SPARK-19002][BUILD][PYTHON] Check pep8 against all Python scripts
## What changes were proposed in this pull request?

This PR proposes to check pep8 against all other Python scripts and fix the errors as below:

```bash
./dev/create-release/generate-contributors.py
./dev/create-release/releaseutils.py
./dev/create-release/translate-contributors.py
./dev/lint-python
./python/docs/epytext.py
./examples/src/main/python/mllib/decision_tree_classification_example.py
./examples/src/main/python/mllib/decision_tree_regression_example.py
./examples/src/main/python/mllib/gradient_boosting_classification_example.py
./examples/src/main/python/mllib/gradient_boosting_regression_example.py
./examples/src/main/python/mllib/linear_regression_with_sgd_example.py
./examples/src/main/python/mllib/logistic_regression_with_lbfgs_example.py
./examples/src/main/python/mllib/naive_bayes_example.py
./examples/src/main/python/mllib/random_forest_classification_example.py
./examples/src/main/python/mllib/random_forest_regression_example.py
./examples/src/main/python/mllib/svm_with_sgd_example.py
./examples/src/main/python/streaming/network_wordjoinsentiments.py
./sql/hive/src/test/resources/data/scripts/cat.py
./sql/hive/src/test/resources/data/scripts/cat_error.py
./sql/hive/src/test/resources/data/scripts/doubleescapedtab.py
./sql/hive/src/test/resources/data/scripts/dumpdata_script.py
./sql/hive/src/test/resources/data/scripts/escapedcarriagereturn.py
./sql/hive/src/test/resources/data/scripts/escapednewline.py
./sql/hive/src/test/resources/data/scripts/escapedtab.py
./sql/hive/src/test/resources/data/scripts/input20_script.py
./sql/hive/src/test/resources/data/scripts/newline.py
```

## How was this patch tested?

- `./python/docs/epytext.py`

  ```bash
  cd ./python/docs $$ make html
  ```

- pep8 check (Python 2.7 / Python 3.3.6)

  ```
  ./dev/lint-python
  ```

- `./dev/merge_spark_pr.py` (Python 2.7 only / Python 3.3.6 not working)

  ```bash
  python -m doctest -v ./dev/merge_spark_pr.py
  ```

- `./dev/create-release/releaseutils.py` `./dev/create-release/generate-contributors.py` `./dev/create-release/translate-contributors.py` (Python 2.7 only / Python 3.3.6 not working)

  ```bash
  python generate-contributors.py
  python translate-contributors.py
  ```

- Examples (Python 2.7 / Python 3.3.6)

  ```bash
  ./bin/spark-submit examples/src/main/python/mllib/decision_tree_classification_example.py
  ./bin/spark-submit examples/src/main/python/mllib/decision_tree_regression_example.py
  ./bin/spark-submit examples/src/main/python/mllib/gradient_boosting_classification_example.py
  ./bin/spark-submit examples/src/main/python/mllib/gradient_boosting_regression_example.p
  ./bin/spark-submit examples/src/main/python/mllib/random_forest_classification_example.py
  ./bin/spark-submit examples/src/main/python/mllib/random_forest_regression_example.py
  ```

- Examples (Python 2.7 only / Python 3.3.6 not working)
  ```
  ./bin/spark-submit examples/src/main/python/mllib/linear_regression_with_sgd_example.py
  ./bin/spark-submit examples/src/main/python/mllib/logistic_regression_with_lbfgs_example.py
  ./bin/spark-submit examples/src/main/python/mllib/naive_bayes_example.py
  ./bin/spark-submit examples/src/main/python/mllib/svm_with_sgd_example.py
  ```

- `sql/hive/src/test/resources/data/scripts/*.py` (Python 2.7 / Python 3.3.6 within suggested changes)

  Manually tested only changed ones.

- `./dev/github_jira_sync.py` (Python 2.7 only / Python 3.3.6 not working)

  Manually tested this after disabling actually adding comments and links.

And also via Jenkins tests.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #16405 from HyukjinKwon/minor-pep8.
2017-01-02 15:23:19 +00:00
Yanbo Liang 9bf8f3cd4f [SPARK-18325][SPARKR][ML] SparkR ML wrappers example code and user guide
## What changes were proposed in this pull request?
* Add all R examples for ML wrappers which were added during 2.1 release cycle.
* Split the whole ```ml.R``` example file into individual example for each algorithm, which will be convenient for users to rerun them.
* Add corresponding examples to ML user guide.
* Update ML section of SparkR user guide.

Note: MLlib Scala/Java/Python examples will be consistent, however, SparkR examples may different from them, since R users may use the algorithms in a different way, for example, using R ```formula``` to specify ```featuresCol``` and ```labelCol```.

## How was this patch tested?
Run all examples manually.

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #16148 from yanboliang/spark-18325.
2016-12-08 06:19:38 -08:00
wm624@hotmail.com aad11209eb [SPARK-18633][ML][EXAMPLE] Add multiclass logistic regression summary python example and document
## What changes were proposed in this pull request?
Logistic Regression summary is added in Python API. We need to add example and document for summary.

The newly added example is consistent with Scala and Java examples.

## How was this patch tested?

Manually tests: Run the example with spark-submit; copy & paste code into pyspark; build document and check the document.

Author: wm624@hotmail.com <wm624@hotmail.com>

Closes #16064 from wangmiao1981/py.
2016-12-07 18:12:49 -08:00
Yunni 34777184cd [SPARK-18081][ML][DOCS] Add user guide for Locality Sensitive Hashing(LSH)
## What changes were proposed in this pull request?
The user guide for LSH is added to ml-features.md, with several scala/java examples in spark-examples.

## How was this patch tested?
Doc has been generated through Jekyll, and checked through manual inspection.

Author: Yunni <Euler57721@gmail.com>
Author: Yun Ni <yunn@uber.com>
Author: Joseph K. Bradley <joseph@databricks.com>
Author: Yun Ni <Euler57721@gmail.com>

Closes #15795 from Yunni/SPARK-18081-lsh-guide.
2016-12-03 16:58:15 -08:00
Reynold Xin c7c7265950 [SPARK-18695] Bump master branch version to 2.2.0-SNAPSHOT
## What changes were proposed in this pull request?
This patch bumps master branch version to 2.2.0-SNAPSHOT.

## How was this patch tested?
N/A

Author: Reynold Xin <rxin@databricks.com>

Closes #16126 from rxin/SPARK-18695.
2016-12-02 21:09:37 -08:00
Xianyang Liu 7569cf6cb8
[SPARK-18420][BUILD] Fix the errors caused by lint check in Java
## What changes were proposed in this pull request?

Small fix, fix the errors caused by lint check in Java

- Clear unused objects and `UnusedImports`.
- Add comments around the method `finalize` of `NioBufferedFileInputStream`to turn off checkstyle.
- Cut the line which is longer than 100 characters into two lines.

## How was this patch tested?
Travis CI.
```
$ build/mvn -T 4 -q -DskipTests -Pyarn -Phadoop-2.3 -Pkinesis-asl -Phive -Phive-thriftserver install
$ dev/lint-java
```
Before:
```
Checkstyle checks failed at following occurrences:
[ERROR] src/main/java/org/apache/spark/network/util/TransportConf.java:[21,8] (imports) UnusedImports: Unused import - org.apache.commons.crypto.cipher.CryptoCipherFactory.
[ERROR] src/test/java/org/apache/spark/network/sasl/SparkSaslSuite.java:[516,5] (modifier) RedundantModifier: Redundant 'public' modifier.
[ERROR] src/main/java/org/apache/spark/io/NioBufferedFileInputStream.java:[133] (coding) NoFinalizer: Avoid using finalizer method.
[ERROR] src/main/java/org/apache/spark/sql/catalyst/expressions/UnsafeMapData.java:[71] (sizes) LineLength: Line is longer than 100 characters (found 113).
[ERROR] src/main/java/org/apache/spark/sql/catalyst/expressions/UnsafeArrayData.java:[112] (sizes) LineLength: Line is longer than 100 characters (found 110).
[ERROR] src/test/java/org/apache/spark/sql/catalyst/expressions/HiveHasherSuite.java:[31,17] (modifier) ModifierOrder: 'static' modifier out of order with the JLS suggestions.
[ERROR]src/main/java/org/apache/spark/examples/ml/JavaLogisticRegressionWithElasticNetExample.java:[64] (sizes) LineLength: Line is longer than 100 characters (found 103).
[ERROR] src/main/java/org/apache/spark/examples/ml/JavaInteractionExample.java:[22,8] (imports) UnusedImports: Unused import - org.apache.spark.ml.linalg.Vectors.
[ERROR] src/main/java/org/apache/spark/examples/ml/JavaInteractionExample.java:[51] (regexp) RegexpSingleline: No trailing whitespace allowed.
```

After:
```
$ build/mvn -T 4 -q -DskipTests -Pyarn -Phadoop-2.3 -Pkinesis-asl -Phive -Phive-thriftserver install
$ dev/lint-java
Using `mvn` from path: /home/travis/build/ConeyLiu/spark/build/apache-maven-3.3.9/bin/mvn
Checkstyle checks passed.
```

Author: Xianyang Liu <xyliu0530@icloud.com>

Closes #15865 from ConeyLiu/master.
2016-11-16 11:59:00 +00:00
uncleGen e6145772ed
[SPARK-18410][STREAMING] Add structured kafka example
## What changes were proposed in this pull request?

This PR provides structured kafka wordcount examples

## How was this patch tested?

Author: uncleGen <hustyugm@gmail.com>

Closes #15849 from uncleGen/SPARK-18410.
2016-11-16 10:19:10 +00:00
Zheng RuiFeng 33be4da539
[SPARK-18427][DOC] Update docs of mllib.KMeans
## What changes were proposed in this pull request?
1,Remove `runs` from docs of mllib.KMeans
2,Add notes for `k` according to comments in sources
## How was this patch tested?
existing tests

Author: Zheng RuiFeng <ruifengz@foxmail.com>

Closes #15873 from zhengruifeng/update_doc_mllib_kmeans.
2016-11-15 15:44:50 +01:00
wm624@hotmail.com 22a9d064e9
[SPARK-14914][CORE] Fix Resource not closed after using, for unit tests and example
## What changes were proposed in this pull request?

This is a follow-up work of #15618.

Close file source;
For any newly created streaming context outside the withContext, explicitly close the context.

## How was this patch tested?

Existing unit tests.

Author: wm624@hotmail.com <wm624@hotmail.com>

Closes #15818 from wangmiao1981/rtest.
2016-11-10 10:54:36 +00:00
chie8842 ee2e741ac1
[SPARK-13770][DOCUMENTATION][ML] Document the ML feature Interaction
I created Scala and Java example and added documentation.

Author: chie8842 <hayashidac@nttdata.co.jp>

Closes #15658 from hayashidac/SPARK-13770.
2016-11-08 13:45:37 +00:00
Maria Rydzy bcbe44440e
[MINOR] Use <= for clarity in Pi examples' Monte Carlo process
## What changes were proposed in this pull request?

If my understanding is correct we should be rather looking at closed disk than the opened one.
## How was this patch tested?

Run simple comparison, of the mean squared error of approaches with closed and opened disk.
https://gist.github.com/mrydzy/1cf0e5c316ef9d6fbd91426b91f1969f
The closed one performed slightly better, but the tested sample wasn't too big, so I rely mostly on the algorithm  understanding.

Author: Maria Rydzy <majrydzy+gh@gmail.com>

Closes #15687 from mrydzy/master.
2016-11-02 09:09:16 +00:00
Jagadeesan e9746f87d0 [SPARK-18133][EXAMPLES][ML] Python ML Pipeline Example has syntax e…
## What changes were proposed in this pull request?

In Python 3, there is only one integer type (i.e., int), which mostly behaves like the long type in Python 2. Since Python 3 won't accept "L", so removed "L" in all examples.

## How was this patch tested?

Unit tests.

…rrors]

Author: Jagadeesan <as2@us.ibm.com>

Closes #15660 from jagadeesanas2/SPARK-18133.
2016-10-28 02:26:55 -07:00