`ReadContext.init` calls `InitContext.getMergedKeyValueMetadata`, which doesn't know how to merge conflicting user defined key-value metadata and throws exception. In our case, when dealing with different but compatible schemas, we have different Spark SQL schema JSON strings in different Parquet part-files, thus causes this problem. Reading similar Parquet files generated by Hive doesn't suffer from this issue.
In this PR, we manually merge the schemas before passing it to `ReadContext` to avoid the exception.
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Author: Cheng Lian <lian@databricks.com>
Closes#4768 from liancheng/spark-6010 and squashes the following commits:
9002f0a [Cheng Lian] Fixes SPARK-6010
Author: Michael Armbrust <michael@databricks.com>
Closes#4757 from marmbrus/udtConversions and squashes the following commits:
3714aad [Michael Armbrust] [SPARK-5996][SQL] Fix specialized outbound conversions
https://issues.apache.org/jira/browse/SPARK-5286
Author: Yin Huai <yhuai@databricks.com>
Closes#4755 from yhuai/SPARK-5286-throwable and squashes the following commits:
4c0c450 [Yin Huai] Catch Throwable instead of Exception.
Also added desc/asc function for constructing sorting expressions more conveniently. And added a small fix to lift alias out of cast expression.
Author: Reynold Xin <rxin@databricks.com>
Closes#4752 from rxin/SPARK-5985 and squashes the following commits:
aeda5ae [Reynold Xin] Added Experimental flag to ColumnName.
047ad03 [Reynold Xin] Lift alias out of cast.
c9cf17c [Reynold Xin] [SPARK-5985][SQL] DataFrame sortBy -> orderBy in Python.
Added a new test suite to make sure Java DF programs can use varargs properly.
Also moved all suites into test.org.apache.spark package to make sure the suites also test for method visibility.
Author: Reynold Xin <rxin@databricks.com>
Closes#4751 from rxin/df-tests and squashes the following commits:
1e8b8e4 [Reynold Xin] Fixed imports and renamed JavaAPISuite.
a6ca53b [Reynold Xin] [SPARK-5904][SQL] DataFrame Java API test suites.
**NOTICE** Do NOT merge this, as we're waiting for #3881 to be merged.
`HiveThriftServer2Suite` has been notorious for its flakiness for a while. This was mostly due to spawning and communicate with external server processes. This PR revamps this test suite for better robustness:
1. Fixes a racing condition occurred while using `tail -f` to check log file
It's possible that the line we are looking for has already been printed into the log file before we start the `tail -f` process. This PR uses `tail -n +0 -f` to ensure all lines are checked.
2. Retries up to 3 times if the server fails to start
In most of the cases, the server fails to start because of port conflict. This PR no longer asks the system to choose an available TCP port, but uses a random port first, and retries up to 3 times if the server fails to start.
3. A server instance is reused among all test cases within a single suite
The original `HiveThriftServer2Suite` is splitted into two test suites, `HiveThriftBinaryServerSuite` and `HiveThriftHttpServerSuite`. Each suite starts a `HiveThriftServer2` instance and reuses it for all of its test cases.
**TODO**
- [ ] Starts the Thrift server in foreground once #3881 is merged (adding `--foreground` flag to `spark-daemon.sh`)
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Author: Cheng Lian <lian@databricks.com>
Closes#4720 from liancheng/revamp-thrift-server-tests and squashes the following commits:
d6c80eb [Cheng Lian] Relaxes server startup timeout
6f14eb1 [Cheng Lian] Revamped HiveThriftServer2Suite for robustness
Author: Michael Armbrust <michael@databricks.com>
Closes#4746 from marmbrus/hiveLock and squashes the following commits:
8b871cf [Michael Armbrust] [SPARK-5952][SQL] Lock when using hive metastore client
Author: Michael Armbrust <michael@databricks.com>
Closes#4738 from marmbrus/udtRepart and squashes the following commits:
c06d7b5 [Michael Armbrust] fix compilation
91c8829 [Michael Armbrust] [SQL][SPARK-5532] Repartition should not use external rdd representation
Author: Michael Armbrust <michael@databricks.com>
Closes#4736 from marmbrus/asExprs and squashes the following commits:
5ba97e4 [Michael Armbrust] [SPARK-5910][SQL] Support for as in selectExpr
1. Column is no longer a DataFrame to simplify class hierarchy.
2. Don't use varargs on abstract methods (see Scala compiler bug SI-9013).
Author: Reynold Xin <rxin@databricks.com>
Closes#4686 from rxin/SPARK-5904 and squashes the following commits:
fd9b199 [Reynold Xin] Fixed Python tests.
df25cef [Reynold Xin] Non final.
5221530 [Reynold Xin] [SPARK-5904][SQL] DataFrame API fixes.
marmbrus am I missing something obvious here? I verified that this fixes the problem for me (on 1.2.1) on EC2, but I'm confused about how others wouldn't have noticed this?
Author: Kay Ousterhout <kayousterhout@gmail.com>
Closes#4630 from kayousterhout/SPARK-5846_1.3 and squashes the following commits:
2022ad4 [Kay Ousterhout] [SPARK-5846] Correctly set job description and pool for SQL jobs
The `int` is 64-bit on 64-bit machine (very common now), we should infer it as LongType for it in Spark SQL.
Also, LongType in SQL will come back as `int`.
Author: Davies Liu <davies@databricks.com>
Closes#4666 from davies/long and squashes the following commits:
6bc6cc4 [Davies Liu] infer int as LongType
Also added test cases for checking the serializability of HiveContext and SQLContext.
Author: Reynold Xin <rxin@databricks.com>
Closes#4628 from rxin/SPARK-5840 and squashes the following commits:
ecb3bcd [Reynold Xin] test cases and reviews.
55eb822 [Reynold Xin] [SPARK-5840][SQL] HiveContext cannot be serialized due to tuple extraction.
This pull request replaces calls to deprecated methods from `java.util.Date` with near-equivalents in `java.util.Calendar`.
Author: Tor Myklebust <tmyklebu@gmail.com>
Closes#4668 from tmyklebu/master and squashes the following commits:
66215b1 [Tor Myklebust] Use GregorianCalendar instead of Timestamp get methods.
Although we've migrated to the DataFrame API, lots of code still uses `rdd` or `srdd` as local variable names. This PR tries to address these naming inconsistencies and some other minor DataFrame related style issues.
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Author: Cheng Lian <lian@databricks.com>
Closes#4670 from liancheng/df-cleanup and squashes the following commits:
3e14448 [Cheng Lian] Cleans up DataFrame variable names and toDF() calls
JIRA: https://issues.apache.org/jira/browse/SPARK-5723
Author: Yin Huai <yhuai@databricks.com>
This patch had conflicts when merged, resolved by
Committer: Michael Armbrust <michael@databricks.com>
Closes#4639 from yhuai/defaultCTASFileFormat and squashes the following commits:
a568137 [Yin Huai] Merge remote-tracking branch 'upstream/master' into defaultCTASFileFormat
ad2b07d [Yin Huai] Update tests and error messages.
8af5b2a [Yin Huai] Update conf key and unit test.
5a67903 [Yin Huai] Use data source write path for Hive's CTAS statements when no storage format/handler is specified.
https://issues.apache.org/jira/browse/SPARK-5875 has a case to reproduce the bug and explain the root cause.
Author: Yin Huai <yhuai@databricks.com>
Closes#4663 from yhuai/projectResolved and squashes the following commits:
472f7b6 [Yin Huai] If a logical.Project has any AggregateExpression or Generator, it's resolved field should be false.
The problem is that after we create an empty hive metastore parquet table (e.g. `CREATE TABLE test (a int) STORED AS PARQUET`), Hive will create an empty dir for us, which cause our data source `ParquetRelation2` fail to get the schema of the table. See JIRA for the case to reproduce the bug and the exception.
This PR is based on #4562 from chenghao-intel.
JIRA: https://issues.apache.org/jira/browse/SPARK-5852
Author: Yin Huai <yhuai@databricks.com>
Author: Cheng Hao <hao.cheng@intel.com>
Closes#4655 from yhuai/CTASParquet and squashes the following commits:
b8b3450 [Yin Huai] Update tests.
2ac94f7 [Yin Huai] Update tests.
3db3d20 [Yin Huai] Minor update.
d7e2308 [Yin Huai] Revert changes in HiveMetastoreCatalog.scala.
36978d1 [Cheng Hao] Update the code as feedback
a04930b [Cheng Hao] fix bug of scan an empty parquet based table
442ffe0 [Cheng Hao] passdown the schema for Parquet File in HiveContext
Author: Michael Armbrust <michael@databricks.com>
Closes#4657 from marmbrus/pythonUdfs and squashes the following commits:
a7823a8 [Michael Armbrust] [SPARK-5868][SQL] Fix python UDFs in HiveContext and checks in SQLContext
In unit test, the table src(key INT, value STRING) is not the same as HIVE src(key STRING, value STRING)
https://github.com/apache/hive/blob/branch-0.13/data/scripts/q_test_init.sql
And in the reflect.q, test failed for expression `reflect("java.lang.Integer", "valueOf", key, 16)`, which expect the argument `key` as STRING not INT.
This PR doesn't aim to change the `src` schema, we can do that after 1.3 released, however, we probably need to re-generate all the golden files.
Author: Cheng Hao <hao.cheng@intel.com>
Closes#4584 from chenghao-intel/reflect and squashes the following commits:
e5bdc3a [Cheng Hao] Move the test case reflect into blacklist
184abfd [Cheng Hao] revert the change to table src1
d9bcf92 [Cheng Hao] Update the HiveContext Unittest
Author: Liang-Chi Hsieh <viirya@gmail.com>
Closes#4649 from viirya/use_checkpath and squashes the following commits:
0f9a1a1 [Liang-Chi Hsieh] Use same function to check path parameter.
Current `ParquetConversions` in `HiveMetastoreCatalog` will transformUp the given plan multiple times if there are many Metastore Parquet tables. Since the transformUp operation is recursive, it should be better to only perform it once.
Author: Liang-Chi Hsieh <viirya@gmail.com>
Closes#4651 from viirya/parquet_atonce and squashes the following commits:
c1ed29d [Liang-Chi Hsieh] Fix bug.
e0f919b [Liang-Chi Hsieh] Only transformUp the given plan once.
Author: Reynold Xin <rxin@databricks.com>
Closes#4640 from rxin/SPARK-5853 and squashes the following commits:
9c6f569 [Reynold Xin] [SPARK-5853][SQL] Schema support in Row.
Added a bunch of tags.
Also changed parquetFile to take varargs rather than a string followed by varargs.
Author: Reynold Xin <rxin@databricks.com>
Closes#4636 from rxin/df-doc and squashes the following commits:
651f80c [Reynold Xin] Fixed parquetFile in PySpark.
8dc3024 [Reynold Xin] [SQL] Various DataFrame doc changes.
This PR adds a `ShowTablesCommand` to support `SHOW TABLES [IN databaseName]` SQL command. The result of `SHOW TABLE` has two columns, `tableName` and `isTemporary`. For temporary tables, the value of `isTemporary` column will be `false`.
JIRA: https://issues.apache.org/jira/browse/SPARK-4865
Author: Yin Huai <yhuai@databricks.com>
Closes#4618 from yhuai/showTablesCommand and squashes the following commits:
0c09791 [Yin Huai] Use ShowTablesCommand.
85ee76d [Yin Huai] Since SHOW TABLES is not a Hive native command any more and we will not see "OK" (originally generated by Hive's driver), use SHOW DATABASES in the test.
94bacac [Yin Huai] Add SHOW TABLES to the list of noExplainCommands.
d71ed09 [Yin Huai] Fix test.
a4a6ec3 [Yin Huai] Add SHOW TABLE command.
Existing implementation of arithmetic operators and BinaryComparison operators have redundant type checking codes, e.g.:
Expression.n2 is used by Add/Subtract/Multiply.
(1) n2 always checks left.dataType == right.dataType. However, this checking should be done once when we resolve expression types;
(2) n2 requires dataType is a NumericType. This can be done once.
This PR optimizes arithmetic and predicate operators by removing such redundant type-checking codes.
Some preliminary benchmarking on 10G TPC-H data over 5 r3.2xlarge EC2 machines shows that this PR can reduce the query time by 5.5% to 11%.
The benchmark queries follow the template below, where OP is plus/minus/times/divide/remainder/bitwise and/bitwise or/bitwise xor.
SELECT l_returnflag, l_linestatus, SUM(l_quantity OP cnt1), SUM(l_quantity OP cnt2), ...., SUM(l_quantity OP cnt700)
FROM (
SELECT l_returnflag, l_linestatus, l_quantity, 1 AS cnt1, 2 AS cnt2, ..., 700 AS cnt700
FROM lineitem
WHERE l_shipdate <= '1998-09-01'
)
GROUP BY l_returnflag, l_linestatus;
Author: kai <kaizeng@eecs.berkeley.edu>
Closes#4472 from kai-zeng/arithmetic-optimize and squashes the following commits:
fef0cf1 [kai] Merge branch 'master' of github.com:apache/spark into arithmetic-optimize
4b3a1bb [kai] chmod a-x
5a41e49 [kai] chmod a-x Expression.scala
cb37c94 [kai] rebase onto spark master
7f6e968 [kai] chmod 100755 -> 100644
6cddb46 [kai] format
7490dbc [kai] fix unresolved-expression exception for EqualTo
9c40bc0 [kai] fix bitwisenot
3cbd363 [kai] clean up test code
ca47801 [kai] override evalInternal for bitwise ops
8fa84a1 [kai] add bitwise or and xor
6892fc4 [kai] revert override evalInternal
f8eba24 [kai] override evalInternal
31ccdd4 [kai] rewrite all bitwise op and remove evalInternal
86297e2 [kai] generalized
cb92ae1 [kai] bitwise-and: override eval
97a7d6c [kai] bitwise-and: override evalInternal using and func
0906c39 [kai] add bitwise test
62abbbc [kai] clean up predicate and arithmetic
b34d58d [kai] add caching and benmark option
12c5b32 [kai] override eval
1cd7571 [kai] fix sqrt and maxof
03fd0c3 [kai] fix predicate
16fd84c [kai] optimize + - * / % -(unary) abs < > <= >=
fd95823 [kai] remove unnecessary type checking
24d062f [kai] test suite
JIRA: https://issues.apache.org/jira/browse/SPARK-5839
Author: Yin Huai <yhuai@databricks.com>
Closes#4626 from yhuai/SPARK-5839 and squashes the following commits:
f779d85 [Yin Huai] Use subqeury to wrap replaced ParquetRelation.
2695f13 [Yin Huai] Merge remote-tracking branch 'upstream/master' into SPARK-5839
f1ba6ca [Yin Huai] Address comment.
2c7fa08 [Yin Huai] Use Subqueries to wrap a data source table.
JIRA: https://issues.apache.org/jira/browse/SPARK-5746
liancheng marmbrus
Author: Yin Huai <yhuai@databricks.com>
Closes#4617 from yhuai/insertOverwrite and squashes the following commits:
8e3019d [Yin Huai] Fix compilation error.
499e8e7 [Yin Huai] Merge remote-tracking branch 'upstream/master' into insertOverwrite
e76e85a [Yin Huai] Address comments.
ac31b3c [Yin Huai] Merge remote-tracking branch 'upstream/master' into insertOverwrite
f30bdad [Yin Huai] Use toDF.
99da57e [Yin Huai] Merge remote-tracking branch 'upstream/master' into insertOverwrite
6b7545c [Yin Huai] Add a pre write check to the data source API.
a88c516 [Yin Huai] DDLParser will take a parsering function to take care CTAS statements.
Lifts `HiveMetastoreCatalog.refreshTable` to `Catalog`. Adds `RefreshTable` command to refresh (possibly cached) metadata in external data sources tables.
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Author: Cheng Lian <lian@databricks.com>
Closes#4624 from liancheng/refresh-table and squashes the following commits:
8d1aa4c [Cheng Lian] Adds REFRESH TABLE command
This PR adds the following filter types for data sources API:
- `IsNull`
- `IsNotNull`
- `Not`
- `And`
- `Or`
The code which converts Catalyst predicate expressions to data sources filters is very similar to filter conversion logics in `ParquetFilters` which converts Catalyst predicates to Parquet filter predicates. In this way we can support nested AND/OR/NOT predicates without changing current `BaseScan` type hierarchy.
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Author: Cheng Lian <lian@databricks.com>
This patch had conflicts when merged, resolved by
Committer: Michael Armbrust <michael@databricks.com>
Closes#4623 from liancheng/more-fiters and squashes the following commits:
1b296f4 [Cheng Lian] Add more filter types for data sources API
before this change:
```scala
Time taken: 0.619 seconds
```
after this change :
```scala
Time taken: 0.619 seconds, Fetched: 4 row(s)
```
Author: OopsOutOfMemory <victorshengli@126.com>
Closes#4604 from OopsOutOfMemory/rowcount and squashes the following commits:
7252dea [OopsOutOfMemory] add fetched row count
Author: Michael Armbrust <michael@databricks.com>
Closes#4587 from marmbrus/position and squashes the following commits:
0810052 [Michael Armbrust] fix tests
395c019 [Michael Armbrust] Merge remote-tracking branch 'marmbrus/position' into position
e155dce [Michael Armbrust] more errors
f3efa51 [Michael Armbrust] Update AnalysisException.scala
d45ff60 [Michael Armbrust] [SQL] Initial support for reporting location of error in sql string
Author: Daoyuan Wang <daoyuan.wang@intel.com>
Closes#4609 from adrian-wang/ctas and squashes the following commits:
0a75d5a [Daoyuan Wang] reorder import
93d1863 [Daoyuan Wang] add null format in ctas and set default col comment to null
When profiling the Join / Aggregate queries via VisualVM, I noticed lots of `SpecificMutableRow` objects created, as well as the `MutableValue`, since the `SpecificMutableRow` are mostly used in data source implementation, but the `copy` method could be called multiple times in upper modules (e.g. in Join / aggregation etc.), duplicated instances created should be avoid.
Author: Cheng Hao <hao.cheng@intel.com>
Closes#4619 from chenghao-intel/specific_mutable_row and squashes the following commits:
9300d23 [Cheng Hao] update the SpecificMutableRow.copy
This PR migrates the Parquet data source to the new data source write support API. Now users can also overwriting and appending to existing tables. Notice that inserting into partitioned tables is not supported yet.
When Parquet data source is enabled, insertion to Hive Metastore Parquet tables is also fullfilled by the Parquet data source. This is done by the newly introduced `HiveMetastoreCatalog.ParquetConversions` rule, which is a "proper" implementation of the original hacky `HiveStrategies.ParquetConversion`. The latter is still preserved, and can be removed together with the old Parquet support in the future.
TODO:
- [x] Update outdated comments in `newParquet.scala`.
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Author: Cheng Lian <lian@databricks.com>
Closes#4563 from liancheng/parquet-refining and squashes the following commits:
fa98d27 [Cheng Lian] Fixes test cases which should disable off Parquet data source
2476e82 [Cheng Lian] Fixes compilation error introduced during rebasing
a83d290 [Cheng Lian] Passes Hive Metastore partitioning information to ParquetRelation2
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Author: Cheng Lian <lian@databricks.com>
Closes#4613 from liancheng/df-implicit-rename and squashes the following commits:
db8bdd3 [Cheng Lian] Renames stringRddToDataFrame to stringRddToDataFrameHolder for consistency
If one tries an example by using copy&paste, throw an exception.
Author: Takeshi Yamamuro <linguin.m.s@gmail.com>
Closes#4615 from maropu/AddMissingImportInSqlContext and squashes the following commits:
ab21b66 [Takeshi Yamamuro] Add missing import in the example of SqlContext
Author: Yin Huai <yhuai@databricks.com>
Closes#4582 from yhuai/jsonErrorMessage and squashes the following commits:
152dbd4 [Yin Huai] Update error message.
1466256 [Yin Huai] Throw a better error message when a JSON object in the input dataset span multiple records (lines for files or strings for an RDD of strings).
select k from (select key k, max(value) v from src group by k) t
Author: Daoyuan Wang <daoyuan.wang@intel.com>
Author: Michael Armbrust <michael@databricks.com>
Closes#4415 from adrian-wang/groupprune and squashes the following commits:
5d2d8a3 [Daoyuan Wang] address Michael's comments
61f8ef7 [Daoyuan Wang] add a unit test
80ddcc6 [Daoyuan Wang] keep project
b69d385 [Daoyuan Wang] add a prune rule for grouping set
This PR fix the issue SPARK-3365.
The reason is Spark generated wrong schema for the type `List` in `ScalaReflection.scala`
for example:
the generated schema for type `Seq[String]` is:
```
{"name":"x","type":{"type":"array","elementType":"string","containsNull":true},"nullable":true,"metadata":{}}`
```
the generated schema for type `List[String]` is:
```
{"name":"x","type":{"type":"struct","fields":[]},"nullable":true,"metadata":{}}`
```
Author: tianyi <tianyi.asiainfo@gmail.com>
Closes#4581 from tianyi/SPARK-3365 and squashes the following commits:
a097e86 [tianyi] change the order of resolution in ScalaReflection.scala
