Commit graph

14 commits

Author SHA1 Message Date
Takuya UESHIN 04418e18d7 [SPARK-35638][PYTHON] Introduce InternalField to manage dtypes and StructFields
### What changes were proposed in this pull request?

Introduces `InternalField` to manage dtypes and `StructField`s.

`InternalFrame` is already managing dtypes, but when it checks the Spark's data types, column names, and nullabilities, it tries to run the analysis phase each time it needs, which will cause a performance issue.

It will use `InternalField` class which stores the retrieved Spark's data types, column names, and nullabilities, and reuse them. Also, in case those can be known, just update and reuse them without asking Spark.

### Why are the changes needed?

Currently there are some performance issues in the pandas-on-Spark layer.

One of them is accessing Java DataFrame and run analysis phase too many times, especially just for retrieving the current column names or data types.

We should reduce the amount of unnecessary access.

### Does this PR introduce _any_ user-facing change?

Improves the performance in pandas-on-Spark layer:

```py
df = ps.read_parquet("/path/to/test.parquet")  # contains ~75 columns
df = df[(df["col"] > 0) & (df["col"] < 10000)]
```

Before the PR, it took about **2.15 sec** and after **1.15 sec**.

### How was this patch tested?

Existing tests.

Closes #32775 from ueshin/issues/SPARK-35638/field.

Authored-by: Takuya UESHIN <ueshin@databricks.com>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
2021-06-08 11:57:28 +09:00
itholic b8740a1d1e [SPARK-35499][PYTHON] Apply black to pandas API on Spark codes
### What changes were proposed in this pull request?

This PR proposes applying `black` to pandas API on Spark codes, for improving static analysis.

By executing the `./dev/reformat-python` in the spark home directory, all the code of the pandas API on Spark is fixed according to the static analysis rules.

### Why are the changes needed?

This can be reduces the cost of static analysis during development.

It has been used continuously for about a year in the Koalas project and its convenience has been proven.

### Does this PR introduce _any_ user-facing change?

No, it's dev-only.

### How was this patch tested?

Manually reformat the pandas API on Spark codes by running the `./dev/reformat-python`, and checked the `./dev/lint-python` is passed.

Closes #32779 from itholic/SPARK-35499.

Authored-by: itholic <haejoon.lee@databricks.com>
Signed-off-by: Liang-Chi Hsieh <viirya@gmail.com>
2021-06-06 17:30:07 -07:00
itholic 0ad5ae54b2 [SPARK-35539][PYTHON] Restore to_koalas to keep the backward compatibility
### What changes were proposed in this pull request?

This PR proposes restoring `to_koalas` to keep the backward compatibility, with throwing deprecated warning.

### Why are the changes needed?

If we remove `to_koalas`, the existing Koalas codes that include `to_koalas` wouldn't work.

### Does this PR introduce _any_ user-facing change?

No. It's restoring the existing functionality.

### How was this patch tested?

Manually tested in local.

```shell
>>> sdf.to_koalas()
.../spark/python/pyspark/pandas/frame.py:4550: FutureWarning: DataFrame.to_koalas is deprecated as of DataFrame.to_pandas_on_spark. Please use the API instead.
  warnings.warn(
```

Closes #32729 from itholic/SPARK-35539.

Authored-by: itholic <haejoon.lee@databricks.com>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
2021-06-02 10:39:24 +09:00
itholic 7e2717333b [SPARK-35453][PYTHON] Move Koalas accessor to pandas_on_spark accessor
### What changes were proposed in this pull request?

This PR proposes renaming the existing "Koalas Accessor" to "Pandas API on Spark Accessor".

### Why are the changes needed?

Because we don't use name "Koalas" anymore, rather use "Pandas API on Spark".

So, the related code bases are all need to be changed.

### Does this PR introduce _any_ user-facing change?

Yes, the usage of pandas API on Spark accessor is changed from `df.koalas.[...]`. to `df.pandas_on_spark.[...]`.

**Note:** `df.koalas.[...]` is still available but with deprecated warnings.

### How was this patch tested?

Manually tested in local and checked one by one.

Closes #32674 from itholic/SPARK-35453.

Authored-by: itholic <haejoon.lee@databricks.com>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
2021-06-01 10:33:10 +09:00
Takuya UESHIN d67d73b708 [SPARK-35505][PYTHON] Remove APIs which have been deprecated in Koalas
### What changes were proposed in this pull request?

Removes APIs which have been deprecated in Koalas.

### Why are the changes needed?

There are some APIs that have been deprecated in Koalas. We shouldn't have those in pandas APIs on Spark.

### Does this PR introduce _any_ user-facing change?

Yes, the APIs deprecated in Koalas will be no longer available.

### How was this patch tested?

Modified some tests which use the deprecated APIs, and the other existing tests should pass.

Closes #32656 from ueshin/issues/SPARK-35505/remove_deprecated.

Authored-by: Takuya UESHIN <ueshin@databricks.com>
Signed-off-by: Takuya UESHIN <ueshin@databricks.com>
2021-05-25 11:16:27 -07:00
itholic 6b912e4179 [SPARK-35364][PYTHON] Renaming the existing Koalas related codes
### What changes were proposed in this pull request?

There are still naming related to Koalas in test and function name. This PR addressed them to fit pandas-on-spark.
- kdf -> psdf
- kser -> psser
- kidx -> psidx
- kmidx -> psmidx
- to_koalas() -> to_pandas_on_spark()

### Why are the changes needed?

This is because the name Koalas is no longer used in PySpark.

### Does this PR introduce _any_ user-facing change?

`to_koalas()` function is renamed to `to_pandas_on_spark()`

### How was this patch tested?

Tested in local manually.
After changing the related naming, I checked them one by one.

Closes #32516 from itholic/SPARK-35364.

Authored-by: itholic <haejoon.lee@databricks.com>
Signed-off-by: Takuya UESHIN <ueshin@databricks.com>
2021-05-20 15:08:30 -07:00
Takuya UESHIN 2a335f2d7d [SPARK-34941][PYTHON] Fix mypy errors and enable mypy check for pandas-on-Spark
### What changes were proposed in this pull request?

Fixes `mypy` errors and enables `mypy` check for pandas-on-Spark.

### Why are the changes needed?

The `mypy` check for pandas-on-Spark was disabled when the initial porting.
It should be enabled again; otherwise we will miss type checking errors.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

The enabled `mypy` check and existing unit tests should pass.

Closes #32540 from ueshin/issues/SPARK-34941/pandas_mypy.

Authored-by: Takuya UESHIN <ueshin@databricks.com>
Signed-off-by: Takuya UESHIN <ueshin@databricks.com>
2021-05-17 10:46:59 -07:00
Sean Owen a189be8754 [MINOR][DOCS] Avoid some python docs where first sentence has "e.g." or similar
### What changes were proposed in this pull request?

Avoid some python docs where first sentence has "e.g." or similar as the period causes the docs to show only half of the first sentence as the summary.

### Why are the changes needed?

See for example https://spark.apache.org/docs/latest/api/python/reference/api/pyspark.ml.regression.LinearRegressionModel.html?highlight=linearregressionmodel#pyspark.ml.regression.LinearRegressionModel.summary where the method description is clearly truncated.

### Does this PR introduce _any_ user-facing change?

Only changes docs.

### How was this patch tested?

Manual testing of docs.

Closes #32508 from srowen/TruncatedPythonDesc.

Authored-by: Sean Owen <srowen@gmail.com>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
2021-05-12 10:38:59 +09:00
Yikun Jiang 44b7931936 [SPARK-35176][PYTHON] Standardize input validation error type
### What changes were proposed in this pull request?
This PR corrects some exception type when the function input params are failed to validate due to TypeError.
In order to convenient to review, there are 3 commits in this PR:
- Standardize input validation error type on sql
- Standardize input validation error type on ml
- Standardize input validation error type on pandas

### Why are the changes needed?
As suggestion from Python exception doc [1]: "Raised when an operation or function is applied to an object of inappropriate type.", but there are many Value error are raised in some pyspark code, this patch fix them.

[1] https://docs.python.org/3/library/exceptions.html#TypeError

Note that: this patch only addresses the exsiting some wrong raise type for input validation, the input validation decorator/framework which mentioned in [SPARK-35176](https://issues.apache.org/jira/browse/SPARK-35176), would be submited in a speparated patch.

### Does this PR introduce _any_ user-facing change?
Yes, code can raise the right TypeError instead of ValueError.

### How was this patch tested?
Existing test case and UT

Closes #32368 from Yikun/SPARK-35176.

Authored-by: Yikun Jiang <yikunkero@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-05-03 15:34:24 +09:00
HyukjinKwon 7ff9d2e3ee [SPARK-35071][PYTHON] Rename Koalas to pandas-on-Spark in main codes
### What changes were proposed in this pull request?

This PR proposes to rename Koalas to pandas-on-Spark in main codes

### Why are the changes needed?

To have the correct name in PySpark. NOTE that the official name in the main documentation will be pandas APIs on Spark to be extra clear. pandas-on-Spark is not the official term.

### Does this PR introduce _any_ user-facing change?

No, it's master-only change. It changes the docstring and class names.

### How was this patch tested?

Manually tested via:

```bash
./python/run-tests --python-executable=python3 --modules pyspark-pandas
```

Closes #32166 from HyukjinKwon/rename-koalas.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-04-15 12:48:59 +09:00
Takuya UESHIN 4ae57d5b3a [SPARK-35039][PYTHON] Remove PySpark version dependent codes
### What changes were proposed in this pull request?

Removes PySpark version dependent codes from `pyspark.pandas` main codes.

### Why are the changes needed?

There are several places to check the PySpark version and switch the logic, but now those are not necessary.
We should remove them.

We will do the same thing after we finish porting tests.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Existing tests.

Closes #32138 from ueshin/issues/SPARK-35039/pyspark_version.

Authored-by: Takuya UESHIN <ueshin@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-04-14 14:30:48 +09:00
Luka Sturtewagen fd8081cd27 [SPARK-34983][PYTHON] Renaming the package alias from pp to ps
### What changes were proposed in this pull request?

This PR proposes to fix:

```python
import pyspark.pandas as pp
```

to

```python
import pyspark.pandas as ps
```

### Why are the changes needed?

`pp` might sound offensive in some contexts.

### Does this PR introduce _any_ user-facing change?

The change is in master only. We'll use `ps` as the short name instead of `pp`.

### How was this patch tested?

The CI in this PR will test it out.

Closes #32108 from LSturtew/renaming_pyspark.pandas.

Authored-by: Luka Sturtewagen <luka.sturtewagen@linkit.nl>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-04-12 11:18:08 +09:00
Takuya UESHIN 2635c3894f [SPARK-34972][PYTHON] Make pandas-on-Spark doctests work
### What changes were proposed in this pull request?

Now that we merged the Koalas main code into PySpark code base (#32036), we should enable doctests on the Spark's infrastructure.

### Why are the changes needed?

Currently the pandas-on-Spark modules are not tested at all.
We should enable doctests first, and we will port other unit tests separately later.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Enabled the whole doctests.

Closes #32069 from ueshin/issues/SPARK-34972/pyspark-pandas_doctests.

Authored-by: Takuya UESHIN <ueshin@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-04-07 20:50:41 +09:00
itholic caf04f9b77 [SPARK-34890][PYTHON] Port/integrate Koalas main codes into PySpark
### What changes were proposed in this pull request?

As a first step of [SPARK-34849](https://issues.apache.org/jira/browse/SPARK-34849), this PR proposes porting the Koalas main code into PySpark.

This PR contains minimal changes to the existing Koalas code as follows:
1. `databricks.koalas` -> `pyspark.pandas`
2. `from databricks import koalas as ks` -> `from pyspark import pandas as pp`
3. `ks.xxx -> pp.xxx`

Other than them:
1. Added a line to `python/mypy.ini` in order to ignore the mypy test. See related issue at [SPARK-34941](https://issues.apache.org/jira/browse/SPARK-34941).
2. Added a comment to several lines in several files to ignore the flake8 F401. See related issue at [SPARK-34943](https://issues.apache.org/jira/browse/SPARK-34943).

When this PR is merged, all the features that were previously used in [Koalas](https://github.com/databricks/koalas) will be available in PySpark as well.

Users can access to the pandas API in PySpark as below:

```python
>>> from pyspark import pandas as pp
>>> ppdf = pp.DataFrame({"A": [1, 2, 3], "B": [15, 20, 25]})
>>> ppdf
   A   B
0  1  15
1  2  20
2  3  25
```

The existing "options and settings" in Koalas are also available in the same way:

```python
>>> from pyspark.pandas.config import set_option, reset_option, get_option
>>> ppser1 = pp.Series([1, 2, 3])
>>> ppser2 = pp.Series([3, 4, 5])
>>> ppser1 + ppser2
Traceback (most recent call last):
...
ValueError: Cannot combine the series or dataframe because it comes from a different dataframe. In order to allow this operation, enable 'compute.ops_on_diff_frames' option.

>>> set_option("compute.ops_on_diff_frames", True)
>>> ppser1 + ppser2
0    4
1    6
2    8
dtype: int64
```

Please also refer to the [API Reference](https://koalas.readthedocs.io/en/latest/reference/index.html) and [Options and Settings](https://koalas.readthedocs.io/en/latest/user_guide/options.html) for more detail.

**NOTE** that this PR intentionally ports the main codes of Koalas first almost as are with minimal changes because:
- Koalas project is fairly large. Making some changes together for PySpark will make it difficult to review the individual change.
    Koalas dev includes multiple Spark committers who will review. By doing this, the committers will be able to more easily and effectively review and drive the development.
- Koalas tests and documentation require major changes to make it look great together with PySpark whereas main codes do not require.
- We lately froze the Koalas codebase, and plan to work together on the initial porting. By porting the main codes first as are, it unblocks the Koalas dev to work on other items in parallel.

I promise and will make sure on:
- Rename Koalas to PySpark pandas APIs and/or pandas-on-Spark accordingly in documentation, and the docstrings and comments in the main codes.
- Triage APIs to remove that don’t make sense when Koalas is in PySpark

The documentation changes will be tracked in [SPARK-34885](https://issues.apache.org/jira/browse/SPARK-34885), the test code changes will be tracked in [SPARK-34886](https://issues.apache.org/jira/browse/SPARK-34886).

### Why are the changes needed?

Please refer to:
- [[DISCUSS] Support pandas API layer on PySpark](http://apache-spark-developers-list.1001551.n3.nabble.com/DISCUSS-Support-pandas-API-layer-on-PySpark-td30945.html)
- [[VOTE] SPIP: Support pandas API layer on PySpark](http://apache-spark-developers-list.1001551.n3.nabble.com/VOTE-SPIP-Support-pandas-API-layer-on-PySpark-td30996.html)

### Does this PR introduce _any_ user-facing change?

Yes, now users can use the pandas APIs on Spark

### How was this patch tested?

Manually tested for exposed major APIs and options as described above.

### Koalas contributors

Koalas would not have been possible without the following contributors:

ueshin
HyukjinKwon
rxin
xinrong-databricks
RainFung
charlesdong1991
harupy
floscha
beobest2
thunterdb
garawalid
LucasG0
shril
deepyaman
gioa
fwani
90jam
thoo
AbdealiJK
abishekganesh72
gliptak
DumbMachine
dvgodoy
stbof
nitlev
hjoo
gatorsmile
tomspur
icexelloss
awdavidson
guyao
akhilputhiry
scook12
patryk-oleniuk
tracek
dennyglee
athena15
gstaubli
WeichenXu123
hsubbaraj
lfdversluis
ktksq
shengjh
margaret-databricks
LSturtew
sllynn
manuzhang
jijosg
sadikovi

Closes #32036 from itholic/SPARK-34890.

Authored-by: itholic <haejoon.lee@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-04-06 12:42:39 +09:00