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Author SHA1 Message Date
Shivaram Venkataraman 5e9a9317c5 Merge branch 'master' of git://github.com/mesos/spark into netty-dbg 2013-06-12 16:38:01 -07:00
ryanlecompte db5bca08ff add a new top K method to RDD using a bounded priority queue 2013-06-12 10:54:16 -07:00
Patrick Wendell fd6148c8b2 Removing print statement 2013-06-10 10:27:25 -07:00
Andrew xia 190ec61799 change code style and debug info 2013-06-10 15:27:02 +08:00
Patrick Wendell ef14dc2e77 Adding Java-API version of compression codec 2013-06-09 18:09:46 -07:00
Patrick Wendell df592192e7 Monads FTW 2013-06-09 18:09:24 -07:00
Patrick Wendell 083a3485ab Clean extra whitespace 2013-06-09 11:49:33 -07:00
Patrick Wendell d1bbcebae5 Adding compression to Hadoop save functions 2013-06-09 11:39:35 -07:00
Mingfei ade822011d not check return value of eventQueue.take 2013-06-08 16:26:45 +08:00
Mingfei 4fd86e0e10 delete test code for joblogger in SparkContext 2013-06-08 15:45:47 +08:00
Mingfei 362f0f93ac Merge branch 'master' of https://github.com/mesos/spark 2013-06-08 15:20:13 +08:00
Mingfei 1a4d93c025 modify to pass job annotation by localProperties and use daeamon thread to do joblogger's work 2013-06-08 14:23:39 +08:00
Matei Zaharia b58a29295b Small formatting and style fixes 2013-06-07 22:51:28 -07:00
Matei Zaharia c8fc423bc2 Merge pull request #631 from jerryshao/master 
Fix block manager UI display issue when enable spark.cleaner.ttl
 2013-06-07 22:43:18 -07:00
Matei Zaharia c9ca0a4a58 Small code style fix to SchedulingAlgorithm.scala 2013-06-07 22:40:44 -07:00
Matei Zaharia 1ae60bcb36 Merge pull request #634 from xiajunluan/master 
[Spark-753] Fix ClusterSchedulSuite unit test failed
 2013-06-07 22:39:06 -07:00
Shivaram Venkataraman ac480fd977 Clean up variables and counters in BlockFetcherIterator 2013-06-06 16:34:27 -07:00
Gavin Li e179ff8a32 update according to comments 2013-06-05 22:41:05 +00:00
Shivaram Venkataraman cb2f5046ee Pass in bufferSize to BufferedOutputStream 2013-06-05 15:09:02 -07:00
Shivaram Venkataraman c851957fe4 Don't write zero block files with java serializer 2013-06-05 14:28:38 -07:00
Christopher Nguyen 9d35904357 In the current code, when both partitions happen to have zero-length, the return mean will be NaN. 
Consequently, the result of mean after reducing over all partitions will also be NaN,
which is not correct if there are partitions with non-zero length. This patch fixes this issue.
 2013-06-04 22:12:47 -07:00
Matei Zaharia fff3728552 Merge pull request #640 from pwendell/timeout-update 
Fixing bug in BlockManager timeout
 2013-06-04 16:09:50 -07:00
Patrick Wendell 061fd3ae36 Fixing bug in BlockManager timeout 2013-06-04 19:02:44 -04:00
Matei Zaharia f420d4f228 Merge pull request #639 from pwendell/timeout-update 
Bump akka and blockmanager timeouts to 60 seconds
 2013-06-04 15:25:58 -07:00
Patrick Wendell 8bd4e12104 Bump akka and blockmanager timeouts to 60 seconds 2013-06-04 18:14:24 -04:00
Shivaram Venkataraman 96943a1cc0 var to val 2013-06-03 12:29:38 -07:00
Shivaram Venkataraman cd347f547a Reuse the file object as it is valid after delete 2013-06-03 12:27:51 -07:00
Shivaram Venkataraman a058b0acf3 Delete a file for a block if it already exists. 2013-06-03 12:10:00 -07:00
Andrew xia 606bb1b450 Fix schedulingAlgorithm bugs for unit test 2013-06-03 10:29:23 +08:00
Gavin Li 4a9913d66a add ut for pipe enhancement 2013-06-02 23:21:09 +00:00
Shivaram Venkataraman 038cfc1a9a Make connect timeout configurable 2013-05-31 23:32:18 -07:00
Shivaram Venkataraman 91aca92249 Another round of Netty fixes. 
1. Avoid race condition between stop and copier completion
2. Handle socket exceptions by reporting them and filling in a failed
FetchResult
 2013-05-31 23:21:38 -07:00
Gavin Li 9f84315c05 enhance pipe to support what we can do in hadoop streaming 2013-06-01 00:26:10 +00:00
Reynold Xin de1167bf2c Incorporated Charles' feedback to put rdd metadata removal in 
BlockManagerMasterActor.
 2013-05-31 15:54:57 -07:00
Reynold Xin ba5e544461 More block manager cleanup. 
Implemented a removeRdd method in BlockManager, and use that to
implement RDD.unpersist. Previously, unpersist needs to send B akka
messages, where B = number of blocks. Now unpersist only needs to send W
akka messages, where W = the number of workers.
 2013-05-31 01:48:16 -07:00
jerryshao 926f41cc52 fix block manager UI display issue when enable spark.cleaner.ttl 2013-05-31 09:32:52 +08:00
Reynold Xin f6ad3781b1 Fixed the flaky unpersist test in RDDSuite. 2013-05-30 16:28:08 -07:00
Reynold Xin bed1b08169 Do not create symlink for local add file. Instead, copy the file. 
This prevents Spark from changing the original file's permission, and
also allow add file to work on non-posix operating systems.
 2013-05-30 16:21:49 -07:00
Shivaram Venkataraman 3b0cd17343 Merge branch 'master' of git://github.com/mesos/spark 
Conflicts:
	core/src/test/scala/spark/ShuffleSuite.scala
 2013-05-30 14:36:24 -07:00
Andrew xia c3db3ea554 1. Add unit test for local scheduler 
2. Move localTaskSetManager to a new file
 2013-05-30 20:49:40 +08:00
Andrew xia ecceb101d3 implement FIFO and fair scheduler for spark local mode 2013-05-30 10:43:01 +08:00
Shivaram Venkataraman 19fd6d54c0 Also flush serializer in revertPartialWrites 2013-05-29 17:29:34 -07:00
Shivaram Venkataraman 618c8cae1e Skip fetching zero-sized blocks in OIO. 
Also unify splitLocalRemoteBlocks for netty/nio and add a test case
 2013-05-29 13:18:54 -07:00
Matei Zaharia 6ed71390d9 Merge pull request #626 from stephenh/remove-add-if-no-port 
Remove unused addIfNoPort.
 2013-05-29 10:14:22 -07:00
Shivaram Venkataraman b79b10a6d6 Flush serializer to fix zero-size kryo blocks bug. 
Also convert the local-cluster test case to check for non-zero block sizes
 2013-05-29 00:52:55 -07:00
Matei Zaharia 41d230ccb0 Merge pull request #611 from squito/classloader 
Use default classloaders for akka & deserializing task results
 2013-05-28 23:35:24 -07:00
Shivaram Venkataraman fbc1ab3468 Couple of Netty fixes 
a. Fix the port number by reading it from the bound channel
b. Fix the shutdown sequence to make sure we actually block on the channel
c. Fix the unit test to use two JVMs.
 2013-05-28 16:27:16 -07:00
Stephen Haberman 4fe1fbdd51 Remove unused addIfNoPort. 2013-05-28 16:26:32 -05:00
Matei Zaharia 3db1e17baa Merge pull request #620 from jerryshao/master 
Fix CheckpointRDD java.io.FileNotFoundException when calling getPreferredLocations
 2013-05-27 21:31:43 -07:00
Matei Zaharia e8d4b6c296 Merge pull request #529 from xiajunluan/master 
[SPARK-663]Implement Fair Scheduler in Spark Cluster Scheduler
 2013-05-25 21:09:03 -07:00
Reynold Xin 6bbbe01287 Fixed a stupid mistake that NonJavaSerializableClass was made Java 
serializable.
 2013-05-24 16:51:45 -07:00
Reynold Xin 26962c9340 Automatically configure Netty port. This makes unit tests using 
local-cluster pass. Previously they were failing because Netty was
trying to bind to the same port for all processes.

Pair programmed with @shivaram.
 2013-05-24 16:39:33 -07:00
Reynold Xin 6ea085169d Fixed the bug that shuffle serializer is ignored by the new shuffle 
block iterators for local blocks. Also added a unit test for that.
 2013-05-24 14:08:37 -07:00
jerryshao bd3ea8f2a6 fix CheckpointRDD getPreferredLocations java.io.FileNotFoundException 2013-05-24 14:26:19 +08:00
Matei Zaharia a2b0a7975c Merge pull request #619 from woggling/adjust-sampling 
Use ARRAY_SAMPLE_SIZE constant instead of hard-coded 100.0 in SizeEstimator
 2013-05-21 18:16:20 -07:00
Charles Reiss f350f14084 Use ARRAY_SAMPLE_SIZE constant instead of 100.0 2013-05-21 18:11:33 -07:00
Charles Reiss 786c97b87c DistributedSuite: remove dead test code 2013-05-21 11:35:49 -07:00
Andrew xia ecd6d75c6a fix bug of unit tests 2013-05-21 06:49:23 +08:00
Reynold Xin 5912cc4967 Merge pull request #610 from JoshRosen/spark-747 
Throw exception if TaskResult exceeds Akka frame size
 2013-05-17 19:58:40 -07:00
Reynold Xin 8d78c5f89f Changed the logging level from info to warning when addJar(null) is 
called.
 2013-05-17 18:51:35 -07:00
Andrew xia 3d4672eaa9 Merge branch 'master' into xiajunluan 
Conflicts:
	core/src/main/scala/spark/SparkContext.scala
	core/src/main/scala/spark/scheduler/cluster/ClusterScheduler.scala
	core/src/main/scala/spark/scheduler/cluster/TaskSetManager.scala
 2013-05-18 07:28:03 +08:00
Andrew xia d19753b9c7 expose TaskSetManager type to resourceOffer function in ClusterScheduler 2013-05-18 06:45:19 +08:00
Andrew xia c6e2770bfe Fix ClusterScheduler bug to avoid allocating tasks to same slave 2013-05-17 05:10:38 +08:00
Mridul Muralidharan f0881f8d48 Hope this does not turn into a bike shed change 2013-05-17 01:58:50 +05:30
Mridul Muralidharan feddd2530d Filter out nulls - prevent NPE 2013-05-16 17:49:14 +05:30
Josh Rosen b8e46b6074 Abort job if result exceeds Akka frame size; add test. 2013-05-16 01:57:57 -07:00
Matei Zaharia 2f576aba8f Merge pull request #602 from rxin/shufflemerge 
Manual merge & cleanup of Shane's Shuffle Performance Optimization
 2013-05-15 18:06:24 -07:00
Reynold Xin 203d7b7c14 Merge pull request #593 from squito/driver_ui_link 
Master UI has link to Application UI
 2013-05-15 00:47:20 -07:00
Reynold Xin f3491cb89b Merge branch 'master' of github.com:mesos/spark into shufflemerge 
Conflicts:
	core/src/main/scala/spark/storage/BlockManager.scala
	core/src/test/scala/spark/DistributedSuite.scala
	project/SparkBuild.scala
 2013-05-15 00:31:52 -07:00
Reynold Xin f9d40a5848 Added a comment in JdbcRDD for example usage. 2013-05-14 23:29:57 -07:00
Reynold Xin 81ad2fa331 Merge branch 'jdbc' of github.com:koeninger/spark 
Conflicts:
	project/SparkBuild.scala
 2013-05-14 23:12:00 -07:00
Imran Rashid 38d4b97c6d use threads classloader when deserializing task results; classnotfoundexception includes classloader 2013-05-14 22:32:14 -07:00
Imran Rashid d7d1da79d3 when akka starts, use akkas default classloader (current thread) 2013-05-14 22:32:09 -07:00
Cody Koeninger b16c4896f6 add test for JdbcRDD using embedded derby, per rxin suggestion 2013-05-14 23:44:04 -05:00
Matei Zaharia 016ac86830 Merge pull request #601 from rxin/emptyrdd-master 
EmptyRDD (master branch 0.8)
 2013-05-13 21:45:36 -07:00
Matei Zaharia 4b354e0a08 Merge pull request #589 from mridulm/master 
Add support for instance local scheduling
 2013-05-13 17:39:19 -07:00
Patrick Wendell 7f0833647b Capturing class name 2013-05-12 07:54:03 -07:00
Patrick Wendell 72b9c4cb6e Small fix 2013-05-11 23:53:50 -07:00
Patrick Wendell 1c15b85051 Removing import 2013-05-11 23:52:53 -07:00
Patrick Wendell 059ab88754 Changing technique to use same code path in all cases 2013-05-11 23:50:54 -07:00
Cody Koeninger 3da2305ed0 code cleanup per rxin comments 2013-05-11 23:59:07 -05:00
Josh Rosen 440719109e Throw exception if task result exceeds Akka frame size. 
This partially addresses SPARK-747.
 2013-05-11 19:17:13 -07:00
Patrick Wendell a5c28bb888 Removing unnecessary map 2013-05-11 14:20:39 -07:00
Patrick Wendell 0345954530 SPARK-738: Spark should detect and squash nonserializable exceptions 2013-05-11 14:17:09 -07:00
Mark Hamstra 6e6b3e0d7e Actually use the cleaned closure in foreachPartition 2013-05-10 13:02:34 -07:00
Mridul Muralidharan b05c9d22d7 Remove explicit hardcoding of yarn-standalone as args(0) if it is missing. 2013-05-09 18:49:12 +05:30
Imran Rashid 0ab818d508 fix linebreak 2013-05-09 00:38:59 -07:00
Reynold Xin 9cafacf32d Added test for Netty suite. 2013-05-07 22:42:37 -07:00
Reynold Xin 5d70ee4663 Cleaned up connection manager (moved many classes to their own files). 2013-05-07 22:42:15 -07:00
Reynold Xin 8388e8dd7a Minor style fix in DiskStore... 2013-05-07 18:40:35 -07:00
Reynold Xin 547dcbe494 Cleaned up Scala files in network/netty from Shane's PR. 2013-05-07 18:39:33 -07:00
Reynold Xin 9e64396ca4 Cleaned up the Java files from Shane's PR. 2013-05-07 18:30:54 -07:00
Reynold Xin 0e5cc30868 Cleaned up BlockManager and BlockFetcherIterator from Shane's PR. 2013-05-07 18:18:24 -07:00
Reynold Xin 8b79485171 Moved BlockFetcherIterator to its own file. 2013-05-07 17:02:32 -07:00
Reynold Xin 90577ada69 Merge branch 'shuffle-performance-fix-0.7' of github.com:shane-huang/spark into shufflemerge 
Conflicts:
	core/src/main/scala/spark/storage/BlockManager.scala
	core/src/main/scala/spark/storage/DiskStore.scala
	project/SparkBuild.scala
 2013-05-07 15:56:19 -07:00
Reynold Xin 64d4d2b036 Added tests for joins, cogroups, and unions for EmptyRDD. 2013-05-06 16:30:46 -07:00
Reynold Xin 0fd84965f6 Added EmptyRDD. 2013-05-06 15:40:34 -07:00
Imran Rashid 22a5063ae4 switch from separating appUI host & port to combining into just appUiUrl 2013-05-05 12:19:11 -07:00
Matei Zaharia 7af92f248b Merge pull request #597 from JoshRosen/webui-fixes 
Two minor bug fixes for Spark Web UI
 2013-05-04 22:29:17 -07:00
Reynold Xin 0a2bed356b Fixed flaky unpersist test in DistributedSuite. 2013-05-04 21:50:08 -07:00
Reynold Xin 62a077cd08 Merge branch 'unpersist-test' of github.com:shivaram/spark into blockmanager 2013-05-04 21:49:50 -07:00
Josh Rosen 42b1953c53 Fix SPARK-630: app details page shows finished executors as running. 2013-05-04 18:34:47 -07:00
Josh Rosen c0688451a6 Fix wrong closing tags in web UI HTML. 2013-05-04 18:34:46 -07:00
Josh Rosen d48e9fde01 Fix SPARK-629: weird number of cores in job details page. 2013-05-04 18:34:45 -07:00
Mridul Muralidharan 25198d7e9e Merge branch 'master' of github.com:mridulm/spark 2013-05-04 20:45:56 +05:30
Mridul Muralidharan 5b011d18d7 Merge from master 2013-05-04 20:41:27 +05:30
Mridul Muralidharan edb57c8331 Add support for instance local in getPreferredLocations of ZippedPartitionsBaseRDD. Add comments to both ZippedPartitionsBaseRDD and ZippedRDD to better describe the potential problem with the approach 2013-05-04 19:47:45 +05:30
Matei Zaharia 3bf2c868c3 Merge pull request #594 from shivaram/master 
Add zip partitions to Java API
 2013-05-03 18:27:30 -07:00
Shivaram Venkataraman 2274ad0786 Fix flaky test by changing catch and adding sleep 2013-05-03 16:35:35 -07:00
Shivaram Venkataraman bb8a434f9d Add zipPartitions to Java API. 2013-05-03 15:14:02 -07:00
Imran Rashid 6fae936088 applications (aka drivers) send their webUI address to master when registering so it can be displayed in the master web ui 2013-05-03 12:59:10 -07:00
Mridul Muralidharan ea2a6f91d3 pull from master 2013-05-04 00:35:59 +05:30
Reynold Xin 93091f6936 Merge branch 'master' of github.com:mesos/spark into blockmanager 2013-05-03 01:02:32 -07:00
Reynold Xin 2bc895a829 Updated according to Matei's code review comment. 2013-05-03 01:02:16 -07:00
Mridul Muralidharan 11589c39d9 Fix ZippedRDD as part Matei's suggestion 2013-05-03 12:23:30 +05:30
Matei Zaharia 6fe9d4e61e Merge pull request #592 from woggling/localdir-fix 
Don't accept generated local directory names that can't be created
 2013-05-02 21:33:56 -07:00
Matei Zaharia 538ee755b4 Merge pull request #581 from jerryshao/master 
fix [SPARK-740] block manage UI throws exception when enabling Spark Streaming
 2013-05-02 09:01:42 -07:00
Charles Reiss c847dd3da2 Don't accept generated temp directory names that can't be created successfully. 2013-05-01 23:19:10 -07:00
Reynold Xin 4a31877408 Added the unpersist api to JavaRDD. 2013-05-01 20:31:54 -07:00
Reynold Xin 98df9d2853 Added removeRdd function in BlockManager. 2013-05-01 20:17:09 -07:00
Mridul Muralidharan dfde9ce9dd comment out debug versions of checkHost, etc from Utils - which were used to test 2013-05-02 07:41:33 +05:30
Mridul Muralidharan 1b5aaeadc7 Integrate review comments 2 2013-05-02 07:30:06 +05:30
jerryshao c047f0e3ad filter out Spark streaming block RDD and sort RDDInfo with id 2013-05-02 09:48:32 +08:00
Mridul Muralidharan 609a817f52 Integrate review comments on pull request 2013-05-02 06:44:33 +05:30
Reynold Xin 204eb32e14 Changed the type of the persistentRdds hashmap back to 
TimeStampedHashMap.
 2013-05-01 16:14:58 -07:00
Reynold Xin 34637b97ec Added SparkContext.cleanup back. Not sure why it was removed before ... 2013-05-01 16:12:37 -07:00
Reynold Xin 3227ec8edd Cleaned up Ram's code. Moved SparkContext.remove to RDD.unpersist. 
Also updated unit tests to make sure they are properly testing for
concurrency.
 2013-05-01 16:07:44 -07:00
harshars 8481562731 Merged Ram's commit on removing RDDs. 
Conflicts:
	core/src/main/scala/spark/SparkContext.scala
 2013-05-01 14:42:17 -07:00
Mridul Muralidharan 27764a00f4 Fix some npe introduced accidentally 2013-05-01 20:56:05 +05:30
Mridul Muralidharan d960e7e0f8 a) Add support for hyper local scheduling - specific to a host + port - before trying host local scheduling. 
b) Add some fixes to test code to ensure it passes (and fixes some other issues).

c) Fix bug in task scheduling which incorrectly used availableCores instead of all cores on the node.
 2013-05-01 20:24:00 +05:30
Matei Zaharia aa8fe1a209 Merge pull request #586 from mridulm/master 
Pull request to address issues Reynold Xin reported
 2013-04-30 22:30:18 -07:00
Reynold Xin dd7bef3147 Two minor fixes according to Ryan LeCompte's review. 2013-04-30 15:02:32 -07:00
Reynold Xin cea6174573 Merge branch 'master' of github.com:mesos/spark into blockmanager 
Conflicts:
	core/src/main/scala/spark/BlockStoreShuffleFetcher.scala
 2013-04-30 13:28:35 -07:00
Mridul Muralidharan 60cabb35cb Add addition catch block for exception too 2013-05-01 01:17:14 +05:30
Mridul Muralidharan 3b748ced22 Be more aggressive and defensive in all uses of SelectionKey in select loop 2013-05-01 00:30:30 +05:30
Mridul Muralidharan 0f45477be1 Change indentation 2013-05-01 00:10:02 +05:30
Mridul Muralidharan 538614acfe Be more aggressive and defensive in select also 2013-05-01 00:05:32 +05:30
Mridul Muralidharan 48854e1dbf If key is not valid, close connection 2013-04-30 23:59:33 +05:30
Matei Zaharia f708dda81e Merge pull request #585 from pwendell/listener-perf 
[Fix SPARK-742] Task Metrics should not employ per-record timing by default
 2013-04-30 07:51:40 -07:00
Mridul Muralidharan e46d547ccd Fix issues reported by Reynold 2013-04-30 16:15:56 +05:30
Reynold Xin 1055785a83 Allow specifying the shuffle write file buffer size. The default buffer 
size is 8KB in FastBufferedOutputStream, which is too small and would
cause a lot of disk seeks.
 2013-04-29 23:33:56 -07:00
Reynold Xin 7007201201 Added a shuffle block manager so it is easier in the future to 
consolidate shuffle output files.
 2013-04-29 23:07:03 -07:00
Reynold Xin d3586ef438 Merge branch 'blockmanager' of github.com:rxin/spark into blockmanager 
Conflicts:
	core/src/main/scala/spark/storage/DiskStore.scala
 2013-04-29 15:44:18 -07:00
Patrick Wendell 016ce1fa9c Using full package name for util 2013-04-29 12:02:27 -07:00
Patrick Wendell 540be6b154 Modified version of the fix which just removes all per-record tracking. 2013-04-29 11:32:07 -07:00
Patrick Wendell 224fbac061 Spark-742: TaskMetrics should not employ per-record timing. 
This patch does three things:

1. Makes TimedIterator a trait with two implementations (one a no-op)
2. Makes the default behavior to use the no-op implementation
3. Removes DelegateBlockFetchTracker. This is just cleanup, but it seems like
   the triat doesn't really reduce complexity in any way.

In the future we can add other implementations, e.g. ones which perform sampling.
 2013-04-29 11:13:43 -07:00
Matei Zaharia 0f45347c7b More unit test fixes 2013-04-28 22:29:27 -07:00
Matei Zaharia bce4089f22 Fix BlockManagerSuite to deal with clearing spark.hostPort 2013-04-28 22:23:48 -07:00
Matei Zaharia 68c07ea198 Merge pull request #582 from shivaram/master 
Add zip partitions interface
 2013-04-28 20:19:33 -07:00
Shivaram Venkataraman 604d3bf56c Rename partition class and add scala doc 2013-04-28 16:31:07 -07:00
Shivaram Venkataraman 15acd49f07 Actually rename classes to ZippedPartitions* 
(the previous commit only renamed the file)
 2013-04-28 16:03:22 -07:00
Shivaram Venkataraman 6e84635ab9 Rename classes from MapZipped* to Zipped* 2013-04-28 15:58:40 -07:00
Mridul Muralidharan afee902443 Attempt to fix streaming test failures after yarn branch merge 2013-04-28 22:26:45 +05:30
Shivaram Venkataraman 0cc6642b7c Rename to zipPartitions and style changes 2013-04-28 05:11:03 -07:00
Shivaram Venkataraman c9c4954d99 Add an interface to zip iterators of multiple RDDs 
The current code supports 2, 3 or 4 arguments but can be extended
to more arguments if required.
 2013-04-26 16:57:46 -07:00
Matei Zaharia 6e6b5204ea Create an empty directory when checkpointing a 0-partition RDD (fixes a 
test failure on Hadoop 2.0)
 2013-04-25 00:42:37 -07:00
Reynold Xin ba6ffa6a5f Allow the specification of a shuffle serializer in the read path (for 
local block reads).
 2013-04-24 17:38:07 -07:00
Reynold Xin aa618ed2a2 Allow changing the serializer on a per shuffle basis. 2013-04-24 14:52:49 -07:00
Mridul Muralidharan dd515ca3ee Attempt at fixing merge conflict 2013-04-24 09:24:17 +05:30
Reynold Xin 31ce6c66d6 Added a BlockObjectWriter interface in block manager so ShuffleMapTask 
doesn't need to build up an array buffer for each shuffle bucket.
 2013-04-23 17:48:59 -07:00
Mridul Muralidharan 8faf5c51c3 Patch from Thomas Graves to improve the YARN Client, and move to more production ready hadoop yarn branch 2013-04-24 02:31:57 +05:30
koeninger dfac0aa5c2 prevent mysql driver from pulling entire resultset into memory. explicitly close resultset and statement. 2013-04-22 21:12:52 -05:00
Mridul Muralidharan 7acab3ab45 Fix review comments, add a new api to SparkHadoopUtil to create appropriate Configuration. Modify an example to show how to use SplitInfo 2013-04-22 08:01:13 +05:30
koeninger b2a3f24dde first attempt at an RDD to pull data from JDBC sources 2013-04-21 00:29:37 -05:00
Mridul Muralidharan ac2e8e8720 Add some basic documentation 2013-04-19 00:13:19 +05:30
Andrew xia 8436bd5d4a remove TaskSetQueueManager and update code style 2013-04-19 02:17:22 +08:00
Andrew xia e0603d7e8b refactor the Schedulable interface and add unit test for SchedulingAlgorithm 2013-04-18 13:13:54 +08:00
Mridul Muralidharan 5ee2f5c483 Cache pattern, add (commented out) alternatives for check* apis 2013-04-17 23:13:34 +05:30
Mridul Muralidharan f07961060d Add a small note on spark.tasks.schedule.aggression 2013-04-17 23:13:02 +05:30
Mridul Muralidharan 02dffd2eb0 Ensure all ask/await block for spark.akka.askTimeout - so that it is controllable : instead of arbitrary timeouts spread across codebase. In our tests, we use 30 seconds, though default of 10 is maintained 2013-04-17 05:52:57 +05:30
Mridul Muralidharan a402b23bcd Fudge order of classpath - so that our jars take precedence over what is in CLASSPATH variable. Sounds logical, hope there is no issue cos of it 2013-04-17 05:52:00 +05:30
Mridul Muralidharan bcdde331c3 Move from master to driver 2013-04-17 04:12:18 +05:30
Mridul Muralidharan ad80f68eb5 remove spurious debug statements 2013-04-16 22:15:34 +05:30
Mridul Muralidharan f7969f72ee Fix exception when checkpoint path does not exist (no data in rdd which is being checkpointed for example) 2013-04-16 21:51:38 +05:30
Mridul Muralidharan 323ab8ff3b Scala does not prevent variable shadowing ! Sick error due to it ... 2013-04-16 17:05:10 +05:30
shane-huang b493f55a4f fix a bug in netty Block Fetcher 
Signed-off-by: shane-huang <shengsheng.huang@intel.com>
 2013-04-16 10:01:01 +08:00
Mridul Muralidharan 59c380d69a Fix npe 2013-04-16 03:29:38 +05:30
Mridul Muralidharan dd2b64ec97 Fix bug with atomic update 2013-04-16 03:19:24 +05:30
Mridul Muralidharan 5540ab8243 Use hostname instead of hostport for executor, fix creation of workdir 2013-04-16 02:57:43 +05:30
Mridul Muralidharan eb7e95e833 Commit job to persist files 2013-04-16 02:56:36 +05:30
Matei Zaharia a64c107449 Make ShuffledRDD.prev transient 2013-04-15 16:41:51 -04:00
Mridul Muralidharan 19652a44be Fix issue with FileSuite failing 2013-04-15 19:16:36 +05:30
Mridul Muralidharan 54b3d45b81 Checkpoint commit - compiles and passes a lot of tests - not all though, looking into FileSuite issues 2013-04-15 18:26:50 +05:30
Mridul Muralidharan d90d2af103 Checkpoint commit - compiles and passes a lot of tests - not all though, looking into FileSuite issues 2013-04-15 18:12:11 +05:30
Matei Zaharia c35d530bcf Fix compile error 2013-04-13 12:43:12 -04:00
Andrew Ash 29d3440efb Add details when BlockManager heartbeats time out 
Makes it more clear what the threshold was for tuning spark.storage.blockManagerSlaveTimeoutMs

Before:
WARN  "Removing BlockManager BlockManagerId(201304022120-1976232532-5050-27464-0, myhostname, 51337) with no recent heart beats

After:
WARN  "Removing BlockManager BlockManagerId(201304022120-1976232532-5050-27464-0, myhostname, 51337) with no recent heart beats: 19216ms exceeds 15000ms
 2013-04-11 01:54:02 -03:00
Andrew xia 2f883c515f Contiue to update codes for scala code style 
1.refactor braces for "class" "if" "while" "for" "match"
2.make code lines less than 100
3.refactor class parameter and extends defination
 2013-04-09 13:02:50 +08:00
Matei Zaharia 054feb6448 Fixed a bug with zip 2013-04-07 21:15:21 -04:00
Matei Zaharia b5900d47b1 Fix compile warning 2013-04-07 20:55:42 -04:00
Matei Zaharia 6962d40b44 Fix deprecated warning 2013-04-07 20:27:33 -04:00
Mridul Muralidharan 6798a09df8 Add support for building against hadoop2-yarn : adding new maven profile for it 2013-04-07 17:47:38 +05:30
shane-huang df47b40b76 Shuffle Performance fix: Use netty embeded OIO file server instead of ConnectionManager 
Shuffle Performance Optimization: do not send 0-byte block requests to reduce network messages
change reference from io.Source to scala.io.Source to avoid looking into io.netty package

Signed-off-by: shane-huang <shengsheng.huang@intel.com>
 2013-04-07 14:37:12 +08:00
Andrew xia 2b373dd07a add properties default value null to fix sbt/sbt test errors 2013-04-02 12:11:14 +08:00
Mark Hamstra e215f67923 Correct sense of 'filter out' in comment. 2013-03-31 08:00:13 -07:00
Mark Hamstra 8bcdc64005 Fixed broken filter in getWritableClass[T] 2013-03-30 22:09:52 -07:00
Matei Zaharia 9831bc1a09 Merge pull request #539 from cgrothaus/fix-webui-workdirpath 
Bugfix: WorkerWebUI must respect workDirPath from Worker
 2013-03-29 22:16:22 -07:00
Matei Zaharia 3cc8ab6e29 Merge pull request #541 from stephenh/shufflecoalesce 
Add a shuffle parameter to coalesce.
 2013-03-29 22:14:07 -07:00
Andrew xia 1a28f92711 change some typo and some spacing 2013-03-29 08:34:28 +08:00
Andrew xia def3d1c84a 1.remove redundant spacing in source code 
2.replace get/set functions with val and var defination
 2013-03-29 08:20:35 +08:00
Holden Karau f5df729b12 Explicitly catch all throwables (warning in 2.10) 2013-03-24 16:15:32 -07:00
Stephen Haberman dd854d5b9f Use Boolean in the Java API, and != for assert. 2013-03-23 11:49:45 -05:00
Stephen Haberman 4ca273edc4 Merge branch 'master' into shufflecoalesce 
Conflicts:
	core/src/test/scala/spark/RDDSuite.scala
 2013-03-23 11:45:45 -05:00
Matei Zaharia b8949cab88 Merge pull request #505 from stephenh/volatile 
Make Executor fields volatile since they're read from the thread pool.
 2013-03-23 07:19:34 -07:00
Matei Zaharia fd53f2fc7b Merge pull request #510 from markhamstra/WithThing 
mapWith, flatMapWith and filterWith
 2013-03-23 07:13:21 -07:00
Andrew xia d1d9bdaabe Just update typo and comments 2013-03-23 07:25:30 +08:00
Stephen Haberman 00170eb0b9 Fix are/our typo. 2013-03-22 12:59:08 -05:00
Stephen Haberman 1c67c7dfd1 Add a shuffle parameter to coalesce. 
This is useful for when you want just 1 output file (part-00000) but
still up the upstream RDD to be computed in parallel.
 2013-03-22 08:54:44 -05:00
Christoph Grothaus 445f387ef4 Bugfix: WorkerWebUI must respect workDirPath from Worker 2013-03-22 11:08:40 +01:00
Matei Zaharia 35588490cb Merge pull request #538 from rxin/cogroup 
Added mapSideCombine flag to CoGroupedRDD. Added unit test for CoGroupedRDD.
 2013-03-20 19:27:47 -07:00
Stephen Haberman 4f4215311a Merge branch 'master' into volatile 2013-03-20 15:37:10 -05:00
Matei Zaharia b812e6b7bb Merge pull request #526 from markhamstra/foldByKey 
Add foldByKey
 2013-03-20 11:21:02 -07:00
Reynold Xin d48ee7e55e Merge branch 'master' of github.com:mesos/spark into cogroup 2013-03-20 14:00:28 +08:00
Reynold Xin 00a11304fd Added mapSideCombine flag to CoGroupedRDD. Added unit test for 
CoGroupedRDD.
 2013-03-20 13:49:51 +08:00
Matei Zaharia 945d1e720e Merge pull request #536 from sasurfer/master 
CoalescedRDD for many partitions
 2013-03-19 21:59:06 -07:00
Matei Zaharia 1cbbe94ac1 Merge pull request #534 from stephenh/removetrycatch 
Remove try/catch block that can't be hit.
 2013-03-19 21:34:34 -07:00
Andrey Kouznetsov bd167f83b0 call setConf from input format if it is Configurable 2013-03-19 17:15:15 +04:00
Giovanni Delussu aceae029f7 CoalescedRDD changed to work with a big number of partitions both in the original and the new coalesced RDD. 
The limitation was in the range that Scala.Int can represent.
 2013-03-19 11:25:45 +01:00
Stephen Haberman fb34967815 Remove try/catch block that can't be hit. 2013-03-18 01:55:50 -05:00
Mark Hamstra ab33e27cc9 constructorOfA -> constructA in doc comments 2013-03-16 15:29:15 -07:00
Mark Hamstra 9784fc1fcd fix wayward comma in doc comment 2013-03-16 15:25:02 -07:00
Mark Hamstra 32979b5e7d whitespace 2013-03-16 13:36:46 -07:00
Mark Hamstra ca9f81e8fc refactor foldByKey to use combineByKey 2013-03-16 13:31:01 -07:00
Mark Hamstra 1fb192ef40 Merge branch 'master' of https://github.com/mesos/spark into foldByKey 2013-03-16 12:17:13 -07:00
Mark Hamstra 80fc8c82ed _With[Matei] 2013-03-16 12:16:29 -07:00
Mark Hamstra 38454c4aed Merge branch 'master' of https://github.com/mesos/spark into WithThing 2013-03-16 11:54:44 -07:00
Matei Zaharia c1e9cdc49f Merge pull request #525 from stephenh/subtractByKey 
Add PairRDDFunctions.subtractByKey.
 2013-03-16 11:47:45 -07:00
Mark Hamstra ef75be3bf7 Merge branch 'master' of https://github.com/mesos/spark into foldByKey 2013-03-15 21:41:24 -07:00
Andrew xia 5892393140 refactor fair scheduler implementation 
1.Chage "pool" properties to be the memeber of ActiveJob
2.Abstract the Schedulable of Pool and TaskSetManager
3.Abstract the FIFO and FS comparator algorithm
4.Miscellaneous changing of class define and construction
 2013-03-16 11:13:38 +08:00
Matei Zaharia cdbfd1e196 Merge pull request #516 from squito/fix_local_metrics 
Fix local metrics
 2013-03-15 15:13:28 -07:00
Mark Hamstra 1a4070477d whitespace cleanup 2013-03-15 11:28:28 -07:00
Mark Hamstra 857010392b Fuller implementation of foldByKey 2013-03-15 10:56:05 -07:00
Mark Hamstra 16a4ca4537 restrict V type of foldByKey in order to retain ClassManifest; added foldByKey to Java API and test 2013-03-14 13:58:37 -07:00
Mark Hamstra b1422cbdd5 added foldByKey 2013-03-14 12:59:58 -07:00
Stephen Haberman 7786881f47 Fix tabs that snuck in. 2013-03-14 14:57:12 -05:00
Stephen Haberman 7d8bb4df3a Allow subtractByKey's other argument to have a different value type. 2013-03-14 14:44:15 -05:00
Stephen Haberman 4632c45af1 Finished subtractByKeys. 2013-03-14 10:35:34 -05:00
Matei Zaharia 4032beba49 Merge pull request #521 from stephenh/earlyclose 
Close the reader in HadoopRDD as soon as iteration end.
 2013-03-13 19:29:46 -07:00
Stephen Haberman 63fe225587 Simplify SubtractedRDD in preparation from subtractByKey. 2013-03-13 17:17:34 -05:00
Mark Hamstra cd5b947cf6 Merge branch 'master' of https://github.com/mesos/spark into WithThing 2013-03-13 13:16:14 -07:00
Stephen Haberman e7f1a69c6b Add a test for NextIterator. 2013-03-13 10:46:33 -05:00
Stephen Haberman 1a175d13b9 Add NextIterator.closeIfNeeded. 2013-03-13 10:17:39 -05:00
Stephen Haberman 8f00d23598 Remove NextIterator.close default implementation. 2013-03-12 12:30:10 -05:00
Harold Lim 0b64e5f1ac Removed some commented code 2013-03-12 13:31:27 +08:00
Harold Lim f5b1fecb9f Cleaned up the code 2013-03-12 13:31:27 +08:00
Harold Lim b5325182a3 Updated/Refactored the Fair Task Scheduler. It does not inherit ClusterScheduler anymore. Rather, ClusterScheduler internally uses TaskSetQueuesManager that handles the scheduling of taskset queues. This is the class that should be extended to support other scheduling policies 2013-03-12 13:31:27 +08:00
Harold Lim 54ed7c4af4 Changed the name of the system property to set the allocation xml 2013-03-12 13:31:27 +08:00
Harold Lim c07087364b Made changes to the SparkContext to have a DynamicVariable for setting local properties that can be passed down the stack. Added an implementation of the fair scheduler 2013-03-12 13:31:27 +08:00
Stephen Haberman 9e68f48625 More quickly call close in HadoopRDD. 
This also refactors out the common "gotNext" iterator pattern into
a shared utility class.
 2013-03-11 23:59:17 -05:00
Charles Reiss 769d399674 Send block sizes as longs. 2013-03-11 14:17:05 -07:00
Mark Hamstra 562893bea3 deleted excess curly braces 2013-03-10 22:43:08 -07:00