# # Licensed to the Apache Software Foundation (ASF) under one or more # contributor license agreements. See the NOTICE file distributed with # this work for additional information regarding copyright ownership. # The ASF licenses this file to You under the Apache License, Version 2.0 # (the "License"); you may not use this file except in compliance with # the License. You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # import json from shutil import rmtree import tempfile import unittest from pyspark.ml import Transformer from pyspark.ml.classification import DecisionTreeClassifier, LogisticRegression, OneVsRest, \ OneVsRestModel from pyspark.ml.clustering import KMeans from pyspark.ml.feature import Binarizer, HashingTF, PCA from pyspark.ml.linalg import Vectors from pyspark.ml.param import Params from pyspark.ml.pipeline import Pipeline, PipelineModel from pyspark.ml.regression import DecisionTreeRegressor, LinearRegression from pyspark.ml.util import DefaultParamsReadable, DefaultParamsWriter from pyspark.ml.wrapper import JavaParams from pyspark.testing.mlutils import MockUnaryTransformer, SparkSessionTestCase class PersistenceTest(SparkSessionTestCase): def test_linear_regression(self): lr = LinearRegression(maxIter=1) path = tempfile.mkdtemp() lr_path = path + "/lr" lr.save(lr_path) lr2 = LinearRegression.load(lr_path) self.assertEqual(lr.uid, lr2.uid) self.assertEqual(type(lr.uid), type(lr2.uid)) self.assertEqual(lr2.uid, lr2.maxIter.parent, "Loaded LinearRegression instance uid (%s) did not match Param's uid (%s)" % (lr2.uid, lr2.maxIter.parent)) self.assertEqual(lr._defaultParamMap[lr.maxIter], lr2._defaultParamMap[lr2.maxIter], "Loaded LinearRegression instance default params did not match " + "original defaults") try: rmtree(path) except OSError: pass def test_linear_regression_pmml_basic(self): # Most of the validation is done in the Scala side, here we just check # that we output text rather than parquet (e.g. that the format flag # was respected). df = self.spark.createDataFrame([(1.0, 2.0, Vectors.dense(1.0)), (0.0, 2.0, Vectors.sparse(1, [], []))], ["label", "weight", "features"]) lr = LinearRegression(maxIter=1) model = lr.fit(df) path = tempfile.mkdtemp() lr_path = path + "/lr-pmml" model.write().format("pmml").save(lr_path) pmml_text_list = self.sc.textFile(lr_path).collect() pmml_text = "\n".join(pmml_text_list) self.assertIn("Apache Spark", pmml_text) self.assertIn("PMML", pmml_text) def test_logistic_regression(self): lr = LogisticRegression(maxIter=1) path = tempfile.mkdtemp() lr_path = path + "/logreg" lr.save(lr_path) lr2 = LogisticRegression.load(lr_path) self.assertEqual(lr2.uid, lr2.maxIter.parent, "Loaded LogisticRegression instance uid (%s) " "did not match Param's uid (%s)" % (lr2.uid, lr2.maxIter.parent)) self.assertEqual(lr._defaultParamMap[lr.maxIter], lr2._defaultParamMap[lr2.maxIter], "Loaded LogisticRegression instance default params did not match " + "original defaults") try: rmtree(path) except OSError: pass def test_kmeans(self): kmeans = KMeans(k=2, seed=1) path = tempfile.mkdtemp() km_path = path + "/km" kmeans.save(km_path) kmeans2 = KMeans.load(km_path) self.assertEqual(kmeans.uid, kmeans2.uid) self.assertEqual(type(kmeans.uid), type(kmeans2.uid)) self.assertEqual(kmeans2.uid, kmeans2.k.parent, "Loaded KMeans instance uid (%s) did not match Param's uid (%s)" % (kmeans2.uid, kmeans2.k.parent)) self.assertEqual(kmeans._defaultParamMap[kmeans.k], kmeans2._defaultParamMap[kmeans2.k], "Loaded KMeans instance default params did not match " + "original defaults") try: rmtree(path) except OSError: pass def test_kmean_pmml_basic(self): # Most of the validation is done in the Scala side, here we just check # that we output text rather than parquet (e.g. that the format flag # was respected). data = [(Vectors.dense([0.0, 0.0]),), (Vectors.dense([1.0, 1.0]),), (Vectors.dense([9.0, 8.0]),), (Vectors.dense([8.0, 9.0]),)] df = self.spark.createDataFrame(data, ["features"]) kmeans = KMeans(k=2, seed=1) model = kmeans.fit(df) path = tempfile.mkdtemp() km_path = path + "/km-pmml" model.write().format("pmml").save(km_path) pmml_text_list = self.sc.textFile(km_path).collect() pmml_text = "\n".join(pmml_text_list) self.assertIn("Apache Spark", pmml_text) self.assertIn("PMML", pmml_text) def _compare_params(self, m1, m2, param): """ Compare 2 ML Params instances for the given param, and assert both have the same param value and parent. The param must be a parameter of m1. """ # Prevent key not found error in case of some param in neither paramMap nor defaultParamMap. if m1.isDefined(param): paramValue1 = m1.getOrDefault(param) paramValue2 = m2.getOrDefault(m2.getParam(param.name)) if isinstance(paramValue1, Params): self._compare_pipelines(paramValue1, paramValue2) else: self.assertEqual(paramValue1, paramValue2) # for general types param # Assert parents are equal self.assertEqual(param.parent, m2.getParam(param.name).parent) else: # If m1 is not defined param, then m2 should not, too. See SPARK-14931. self.assertFalse(m2.isDefined(m2.getParam(param.name))) def _compare_pipelines(self, m1, m2): """ Compare 2 ML types, asserting that they are equivalent. This currently supports: - basic types - Pipeline, PipelineModel - OneVsRest, OneVsRestModel This checks: - uid - type - Param values and parents """ self.assertEqual(m1.uid, m2.uid) self.assertEqual(type(m1), type(m2)) if isinstance(m1, JavaParams) or isinstance(m1, Transformer): self.assertEqual(len(m1.params), len(m2.params)) for p in m1.params: self._compare_params(m1, m2, p) elif isinstance(m1, Pipeline): self.assertEqual(len(m1.getStages()), len(m2.getStages())) for s1, s2 in zip(m1.getStages(), m2.getStages()): self._compare_pipelines(s1, s2) elif isinstance(m1, PipelineModel): self.assertEqual(len(m1.stages), len(m2.stages)) for s1, s2 in zip(m1.stages, m2.stages): self._compare_pipelines(s1, s2) elif isinstance(m1, OneVsRest) or isinstance(m1, OneVsRestModel): for p in m1.params: self._compare_params(m1, m2, p) if isinstance(m1, OneVsRestModel): self.assertEqual(len(m1.models), len(m2.models)) for x, y in zip(m1.models, m2.models): self._compare_pipelines(x, y) else: raise RuntimeError("_compare_pipelines does not yet support type: %s" % type(m1)) def test_pipeline_persistence(self): """ Pipeline[HashingTF, PCA] """ temp_path = tempfile.mkdtemp() try: df = self.spark.createDataFrame([(["a", "b", "c"],), (["c", "d", "e"],)], ["words"]) tf = HashingTF(numFeatures=10, inputCol="words", outputCol="features") pca = PCA(k=2, inputCol="features", outputCol="pca_features") pl = Pipeline(stages=[tf, pca]) model = pl.fit(df) pipeline_path = temp_path + "/pipeline" pl.save(pipeline_path) loaded_pipeline = Pipeline.load(pipeline_path) self._compare_pipelines(pl, loaded_pipeline) model_path = temp_path + "/pipeline-model" model.save(model_path) loaded_model = PipelineModel.load(model_path) self._compare_pipelines(model, loaded_model) finally: try: rmtree(temp_path) except OSError: pass def test_nested_pipeline_persistence(self): """ Pipeline[HashingTF, Pipeline[PCA]] """ temp_path = tempfile.mkdtemp() try: df = self.spark.createDataFrame([(["a", "b", "c"],), (["c", "d", "e"],)], ["words"]) tf = HashingTF(numFeatures=10, inputCol="words", outputCol="features") pca = PCA(k=2, inputCol="features", outputCol="pca_features") p0 = Pipeline(stages=[pca]) pl = Pipeline(stages=[tf, p0]) model = pl.fit(df) pipeline_path = temp_path + "/pipeline" pl.save(pipeline_path) loaded_pipeline = Pipeline.load(pipeline_path) self._compare_pipelines(pl, loaded_pipeline) model_path = temp_path + "/pipeline-model" model.save(model_path) loaded_model = PipelineModel.load(model_path) self._compare_pipelines(model, loaded_model) finally: try: rmtree(temp_path) except OSError: pass def test_python_transformer_pipeline_persistence(self): """ Pipeline[MockUnaryTransformer, Binarizer] """ temp_path = tempfile.mkdtemp() try: df = self.spark.range(0, 10).toDF('input') tf = MockUnaryTransformer(shiftVal=2)\ .setInputCol("input").setOutputCol("shiftedInput") tf2 = Binarizer(threshold=6, inputCol="shiftedInput", outputCol="binarized") pl = Pipeline(stages=[tf, tf2]) model = pl.fit(df) pipeline_path = temp_path + "/pipeline" pl.save(pipeline_path) loaded_pipeline = Pipeline.load(pipeline_path) self._compare_pipelines(pl, loaded_pipeline) model_path = temp_path + "/pipeline-model" model.save(model_path) loaded_model = PipelineModel.load(model_path) self._compare_pipelines(model, loaded_model) finally: try: rmtree(temp_path) except OSError: pass def test_onevsrest(self): temp_path = tempfile.mkdtemp() df = self.spark.createDataFrame([(0.0, 0.5, Vectors.dense(1.0, 0.8)), (1.0, 0.5, Vectors.sparse(2, [], [])), (2.0, 1.0, Vectors.dense(0.5, 0.5))] * 10, ["label", "wt", "features"]) lr = LogisticRegression(maxIter=5, regParam=0.01) ovr = OneVsRest(classifier=lr) def reload_and_compare(ovr, suffix): model = ovr.fit(df) ovrPath = temp_path + "/{}".format(suffix) ovr.save(ovrPath) loadedOvr = OneVsRest.load(ovrPath) self._compare_pipelines(ovr, loadedOvr) modelPath = temp_path + "/{}Model".format(suffix) model.save(modelPath) loadedModel = OneVsRestModel.load(modelPath) self._compare_pipelines(model, loadedModel) reload_and_compare(OneVsRest(classifier=lr), "ovr") reload_and_compare(OneVsRest(classifier=lr).setWeightCol("wt"), "ovrw") def test_decisiontree_classifier(self): dt = DecisionTreeClassifier(maxDepth=1) path = tempfile.mkdtemp() dtc_path = path + "/dtc" dt.save(dtc_path) dt2 = DecisionTreeClassifier.load(dtc_path) self.assertEqual(dt2.uid, dt2.maxDepth.parent, "Loaded DecisionTreeClassifier instance uid (%s) " "did not match Param's uid (%s)" % (dt2.uid, dt2.maxDepth.parent)) self.assertEqual(dt._defaultParamMap[dt.maxDepth], dt2._defaultParamMap[dt2.maxDepth], "Loaded DecisionTreeClassifier instance default params did not match " + "original defaults") try: rmtree(path) except OSError: pass def test_decisiontree_regressor(self): dt = DecisionTreeRegressor(maxDepth=1) path = tempfile.mkdtemp() dtr_path = path + "/dtr" dt.save(dtr_path) dt2 = DecisionTreeClassifier.load(dtr_path) self.assertEqual(dt2.uid, dt2.maxDepth.parent, "Loaded DecisionTreeRegressor instance uid (%s) " "did not match Param's uid (%s)" % (dt2.uid, dt2.maxDepth.parent)) self.assertEqual(dt._defaultParamMap[dt.maxDepth], dt2._defaultParamMap[dt2.maxDepth], "Loaded DecisionTreeRegressor instance default params did not match " + "original defaults") try: rmtree(path) except OSError: pass def test_default_read_write(self): temp_path = tempfile.mkdtemp() lr = LogisticRegression() lr.setMaxIter(50) lr.setThreshold(.75) writer = DefaultParamsWriter(lr) savePath = temp_path + "/lr" writer.save(savePath) reader = DefaultParamsReadable.read() lr2 = reader.load(savePath) self.assertEqual(lr.uid, lr2.uid) self.assertEqual(lr.extractParamMap(), lr2.extractParamMap()) # test overwrite lr.setThreshold(.8) writer.overwrite().save(savePath) reader = DefaultParamsReadable.read() lr3 = reader.load(savePath) self.assertEqual(lr.uid, lr3.uid) self.assertEqual(lr.extractParamMap(), lr3.extractParamMap()) def test_default_read_write_default_params(self): lr = LogisticRegression() self.assertFalse(lr.isSet(lr.getParam("threshold"))) lr.setMaxIter(50) lr.setThreshold(.75) # `threshold` is set by user, default param `predictionCol` is not set by user. self.assertTrue(lr.isSet(lr.getParam("threshold"))) self.assertFalse(lr.isSet(lr.getParam("predictionCol"))) self.assertTrue(lr.hasDefault(lr.getParam("predictionCol"))) writer = DefaultParamsWriter(lr) metadata = json.loads(writer._get_metadata_to_save(lr, self.sc)) self.assertTrue("defaultParamMap" in metadata) reader = DefaultParamsReadable.read() metadataStr = json.dumps(metadata, separators=[',', ':']) loadedMetadata = reader._parseMetaData(metadataStr, ) reader.getAndSetParams(lr, loadedMetadata) self.assertTrue(lr.isSet(lr.getParam("threshold"))) self.assertFalse(lr.isSet(lr.getParam("predictionCol"))) self.assertTrue(lr.hasDefault(lr.getParam("predictionCol"))) # manually create metadata without `defaultParamMap` section. del metadata['defaultParamMap'] metadataStr = json.dumps(metadata, separators=[',', ':']) loadedMetadata = reader._parseMetaData(metadataStr, ) with self.assertRaisesRegexp(AssertionError, "`defaultParamMap` section not found"): reader.getAndSetParams(lr, loadedMetadata) # Prior to 2.4.0, metadata doesn't have `defaultParamMap`. metadata['sparkVersion'] = '2.3.0' metadataStr = json.dumps(metadata, separators=[',', ':']) loadedMetadata = reader._parseMetaData(metadataStr, ) reader.getAndSetParams(lr, loadedMetadata) if __name__ == "__main__": from pyspark.ml.tests.test_persistence import * try: import xmlrunner testRunner = xmlrunner.XMLTestRunner(output='target/test-reports', verbosity=2) except ImportError: testRunner = None unittest.main(testRunner=testRunner, verbosity=2)