--- layout: global title: PySpark Usage Guide for Pandas with Apache Arrow displayTitle: PySpark Usage Guide for Pandas with Apache Arrow --- * Table of contents {:toc} ## Apache Arrow in Spark Apache Arrow is an in-memory columnar data format that is used in Spark to efficiently transfer data between JVM and Python processes. This currently is most beneficial to Python users that work with Pandas/NumPy data. Its usage is not automatic and might require some minor changes to configuration or code to take full advantage and ensure compatibility. This guide will give a high-level description of how to use Arrow in Spark and highlight any differences when working with Arrow-enabled data. ### Ensure PyArrow Installed If you install PySpark using pip, then PyArrow can be brought in as an extra dependency of the SQL module with the command `pip install pyspark[sql]`. Otherwise, you must ensure that PyArrow is installed and available on all cluster nodes. The current supported version is 0.8.0. You can install using pip or conda from the conda-forge channel. See PyArrow [installation](https://arrow.apache.org/docs/python/install.html) for details. ## Enabling for Conversion to/from Pandas Arrow is available as an optimization when converting a Spark DataFrame to a Pandas DataFrame using the call `toPandas()` and when creating a Spark DataFrame from a Pandas DataFrame with `createDataFrame(pandas_df)`. To use Arrow when executing these calls, users need to first set the Spark configuration 'spark.sql.execution.arrow.enabled' to 'true'. This is disabled by default. In addition, optimizations enabled by 'spark.sql.execution.arrow.enabled' could fallback automatically to non-Arrow optimization implementation if an error occurs before the actual computation within Spark. This can be controlled by 'spark.sql.execution.arrow.fallback.enabled'.
{% include_example dataframe_with_arrow python/sql/arrow.py %}
Using the above optimizations with Arrow will produce the same results as when Arrow is not enabled. Note that even with Arrow, `toPandas()` results in the collection of all records in the DataFrame to the driver program and should be done on a small subset of the data. Not all Spark data types are currently supported and an error can be raised if a column has an unsupported type, see [Supported SQL Types](#supported-sql-types). If an error occurs during `createDataFrame()`, Spark will fall back to create the DataFrame without Arrow. ## Pandas UDFs (a.k.a. Vectorized UDFs) Pandas UDFs are user defined functions that are executed by Spark using Arrow to transfer data and Pandas to work with the data. A Pandas UDF is defined using the keyword `pandas_udf` as a decorator or to wrap the function, no additional configuration is required. Currently, there are two types of Pandas UDF: Scalar and Grouped Map. ### Scalar Scalar Pandas UDFs are used for vectorizing scalar operations. They can be used with functions such as `select` and `withColumn`. The Python function should take `pandas.Series` as inputs and return a `pandas.Series` of the same length. Internally, Spark will execute a Pandas UDF by splitting columns into batches and calling the function for each batch as a subset of the data, then concatenating the results together. The following example shows how to create a scalar Pandas UDF that computes the product of 2 columns.
{% include_example scalar_pandas_udf python/sql/arrow.py %}
### Grouped Map Grouped map Pandas UDFs are used with `groupBy().apply()` which implements the "split-apply-combine" pattern. Split-apply-combine consists of three steps: * Split the data into groups by using `DataFrame.groupBy`. * Apply a function on each group. The input and output of the function are both `pandas.DataFrame`. The input data contains all the rows and columns for each group. * Combine the results into a new `DataFrame`. To use `groupBy().apply()`, the user needs to define the following: * A Python function that defines the computation for each group. * A `StructType` object or a string that defines the schema of the output `DataFrame`. The column labels of the returned `pandas.DataFrame` must either match the field names in the defined output schema if specified as strings, or match the field data types by position if not strings, e.g. integer indices. See [pandas.DataFrame](https://pandas.pydata.org/pandas-docs/stable/generated/pandas.DataFrame.html#pandas.DataFrame) on how to label columns when constructing a `pandas.DataFrame`. Note that all data for a group will be loaded into memory before the function is applied. This can lead to out of memory exceptions, especially if the group sizes are skewed. The configuration for [maxRecordsPerBatch](#setting-arrow-batch-size) is not applied on groups and it is up to the user to ensure that the grouped data will fit into the available memory. The following example shows how to use `groupby().apply()` to subtract the mean from each value in the group.
{% include_example grouped_map_pandas_udf python/sql/arrow.py %}
For detailed usage, please see [`pyspark.sql.functions.pandas_udf`](api/python/pyspark.sql.html#pyspark.sql.functions.pandas_udf) and [`pyspark.sql.GroupedData.apply`](api/python/pyspark.sql.html#pyspark.sql.GroupedData.apply). ### Grouped Aggregate Grouped aggregate Pandas UDFs are similar to Spark aggregate functions. Grouped aggregate Pandas UDFs are used with `groupBy().agg()` and [`pyspark.sql.Window`](api/python/pyspark.sql.html#pyspark.sql.Window). It defines an aggregation from one or more `pandas.Series` to a scalar value, where each `pandas.Series` represents a column within the group or window. Note that this type of UDF does not support partial aggregation and all data for a group or window will be loaded into memory. Also, only unbounded window is supported with Grouped aggregate Pandas UDFs currently. The following example shows how to use this type of UDF to compute mean with groupBy and window operations:
{% include_example grouped_agg_pandas_udf python/sql/arrow.py %}
For detailed usage, please see [`pyspark.sql.functions.pandas_udf`](api/python/pyspark.sql.html#pyspark.sql.functions.pandas_udf) ## Usage Notes ### Supported SQL Types Currently, all Spark SQL data types are supported by Arrow-based conversion except `MapType`, `ArrayType` of `TimestampType`, and nested `StructType`. `BinaryType` is supported only when installed PyArrow is equal to or higher then 0.10.0. ### Setting Arrow Batch Size Data partitions in Spark are converted into Arrow record batches, which can temporarily lead to high memory usage in the JVM. To avoid possible out of memory exceptions, the size of the Arrow record batches can be adjusted by setting the conf "spark.sql.execution.arrow.maxRecordsPerBatch" to an integer that will determine the maximum number of rows for each batch. The default value is 10,000 records per batch. If the number of columns is large, the value should be adjusted accordingly. Using this limit, each data partition will be made into 1 or more record batches for processing. ### Timestamp with Time Zone Semantics Spark internally stores timestamps as UTC values, and timestamp data that is brought in without a specified time zone is converted as local time to UTC with microsecond resolution. When timestamp data is exported or displayed in Spark, the session time zone is used to localize the timestamp values. The session time zone is set with the configuration 'spark.sql.session.timeZone' and will default to the JVM system local time zone if not set. Pandas uses a `datetime64` type with nanosecond resolution, `datetime64[ns]`, with optional time zone on a per-column basis. When timestamp data is transferred from Spark to Pandas it will be converted to nanoseconds and each column will be converted to the Spark session time zone then localized to that time zone, which removes the time zone and displays values as local time. This will occur when calling `toPandas()` or `pandas_udf` with timestamp columns. When timestamp data is transferred from Pandas to Spark, it will be converted to UTC microseconds. This occurs when calling `createDataFrame` with a Pandas DataFrame or when returning a timestamp from a `pandas_udf`. These conversions are done automatically to ensure Spark will have data in the expected format, so it is not necessary to do any of these conversions yourself. Any nanosecond values will be truncated. Note that a standard UDF (non-Pandas) will load timestamp data as Python datetime objects, which is different than a Pandas timestamp. It is recommended to use Pandas time series functionality when working with timestamps in `pandas_udf`s to get the best performance, see [here](https://pandas.pydata.org/pandas-docs/stable/timeseries.html) for details.