# # Licensed to the Apache Software Foundation (ASF) under one or more # contributor license agreements. See the NOTICE file distributed with # this work for additional information regarding copyright ownership. # The ASF licenses this file to You under the Apache License, Version 2.0 # (the "License"); you may not use this file except in compliance with # the License. You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # import sys from pyspark import since from pyspark.rdd import PythonEvalType from pyspark.sql.column import Column from pyspark.sql.dataframe import DataFrame class PandasGroupedOpsMixin(object): """ Min-in for pandas grouped operations. Currently, only :class:`GroupedData` can use this class. """ def apply(self, udf): """ Maps each group of the current :class:`DataFrame` using a pandas udf and returns the result as a `DataFrame`. The user-defined function should take a `pandas.DataFrame` and return another `pandas.DataFrame`. For each group, all columns are passed together as a `pandas.DataFrame` to the user-function and the returned `pandas.DataFrame` are combined as a :class:`DataFrame`. The returned `pandas.DataFrame` can be of arbitrary length and its schema must match the returnType of the pandas udf. .. note:: This function requires a full shuffle. All the data of a group will be loaded into memory, so the user should be aware of the potential OOM risk if data is skewed and certain groups are too large to fit in memory. :param udf: a grouped map user-defined function returned by :func:`pyspark.sql.functions.pandas_udf`. >>> from pyspark.sql.functions import pandas_udf, PandasUDFType >>> df = spark.createDataFrame( ... [(1, 1.0), (1, 2.0), (2, 3.0), (2, 5.0), (2, 10.0)], ... ("id", "v")) >>> @pandas_udf("id long, v double", PandasUDFType.GROUPED_MAP) # doctest: +SKIP ... def normalize(pdf): ... v = pdf.v ... return pdf.assign(v=(v - v.mean()) / v.std()) >>> df.groupby("id").apply(normalize).show() # doctest: +SKIP +---+-------------------+ | id| v| +---+-------------------+ | 1|-0.7071067811865475| | 1| 0.7071067811865475| | 2|-0.8320502943378437| | 2|-0.2773500981126146| | 2| 1.1094003924504583| +---+-------------------+ .. seealso:: :meth:`pyspark.sql.functions.pandas_udf` """ from pyspark.sql import GroupedData assert isinstance(self, GroupedData) # Columns are special because hasattr always return True if isinstance(udf, Column) or not hasattr(udf, 'func') \ or udf.evalType != PythonEvalType.SQL_GROUPED_MAP_PANDAS_UDF: raise ValueError("Invalid udf: the udf argument must be a pandas_udf of type " "GROUPED_MAP.") df = self._df udf_column = udf(*[df[col] for col in df.columns]) jdf = self._jgd.flatMapGroupsInPandas(udf_column._jc.expr()) return DataFrame(jdf, self.sql_ctx) @since(3.0) def cogroup(self, other): """ Cogroups this group with another group so that we can run cogrouped operations. See :class:`CoGroupedData` for the operations that can be run. """ from pyspark.sql import GroupedData assert isinstance(self, GroupedData) return PandasCogroupedOps(self, other) class PandasCogroupedOps(object): """ A logical grouping of two :class:`GroupedData`, created by :func:`GroupedData.cogroup`. .. note:: Experimental .. versionadded:: 3.0 """ def __init__(self, gd1, gd2): self._gd1 = gd1 self._gd2 = gd2 self.sql_ctx = gd1.sql_ctx @since(3.0) def apply(self, udf): """ Applies a function to each cogroup using a pandas udf and returns the result as a `DataFrame`. The user-defined function should take two `pandas.DataFrame` and return another `pandas.DataFrame`. For each side of the cogroup, all columns are passed together as a `pandas.DataFrame` to the user-function and the returned `pandas.DataFrame` are combined as a :class:`DataFrame`. The returned `pandas.DataFrame` can be of arbitrary length and its schema must match the returnType of the pandas udf. .. note:: This function requires a full shuffle. All the data of a cogroup will be loaded into memory, so the user should be aware of the potential OOM risk if data is skewed and certain groups are too large to fit in memory. .. note:: Experimental :param udf: a cogrouped map user-defined function returned by :func:`pyspark.sql.functions.pandas_udf`. >>> from pyspark.sql.functions import pandas_udf, PandasUDFType >>> df1 = spark.createDataFrame( ... [(20000101, 1, 1.0), (20000101, 2, 2.0), (20000102, 1, 3.0), (20000102, 2, 4.0)], ... ("time", "id", "v1")) >>> df2 = spark.createDataFrame( ... [(20000101, 1, "x"), (20000101, 2, "y")], ... ("time", "id", "v2")) >>> @pandas_udf("time int, id int, v1 double, v2 string", ... PandasUDFType.COGROUPED_MAP) # doctest: +SKIP ... def asof_join(l, r): ... return pd.merge_asof(l, r, on="time", by="id") >>> df1.groupby("id").cogroup(df2.groupby("id")).apply(asof_join).show() # doctest: +SKIP +--------+---+---+---+ | time| id| v1| v2| +--------+---+---+---+ |20000101| 1|1.0| x| |20000102| 1|3.0| x| |20000101| 2|2.0| y| |20000102| 2|4.0| y| +--------+---+---+---+ Alternatively, the user can define a function that takes three arguments. In this case, the grouping key(s) will be passed as the first argument and the data will be passed as the second and third arguments. The grouping key(s) will be passed as a tuple of numpy data types, e.g., `numpy.int32` and `numpy.float64`. The data will still be passed in as two `pandas.DataFrame` containing all columns from the original Spark DataFrames. >>> @pandas_udf("time int, id int, v1 double, v2 string", ... PandasUDFType.COGROUPED_MAP) # doctest: +SKIP ... def asof_join(k, l, r): ... if k == (1,): ... return pd.merge_asof(l, r, on="time", by="id") ... else: ... return pd.DataFrame(columns=['time', 'id', 'v1', 'v2']) >>> df1.groupby("id").cogroup(df2.groupby("id")).apply(asof_join).show() # doctest: +SKIP +--------+---+---+---+ | time| id| v1| v2| +--------+---+---+---+ |20000101| 1|1.0| x| |20000102| 1|3.0| x| +--------+---+---+---+ .. seealso:: :meth:`pyspark.sql.functions.pandas_udf` """ # Columns are special because hasattr always return True if isinstance(udf, Column) or not hasattr(udf, 'func') \ or udf.evalType != PythonEvalType.SQL_COGROUPED_MAP_PANDAS_UDF: raise ValueError("Invalid udf: the udf argument must be a pandas_udf of type " "COGROUPED_MAP.") all_cols = self._extract_cols(self._gd1) + self._extract_cols(self._gd2) udf_column = udf(*all_cols) jdf = self._gd1._jgd.flatMapCoGroupsInPandas(self._gd2._jgd, udf_column._jc.expr()) return DataFrame(jdf, self.sql_ctx) @staticmethod def _extract_cols(gd): df = gd._df return [df[col] for col in df.columns] def _test(): import doctest from pyspark.sql import SparkSession import pyspark.sql.pandas.group_ops globs = pyspark.sql.pandas.group_ops.__dict__.copy() spark = SparkSession.builder\ .master("local[4]")\ .appName("sql.pandas.group tests")\ .getOrCreate() globs['spark'] = spark (failure_count, test_count) = doctest.testmod( pyspark.sql.pandas.group_ops, globs=globs, optionflags=doctest.ELLIPSIS | doctest.NORMALIZE_WHITESPACE | doctest.REPORT_NDIFF) spark.stop() if failure_count: sys.exit(-1) if __name__ == "__main__": _test()