### What changes were proposed in this pull request?
This PR intends to fix typos in the sub-modules:
* `R`
* `common`
* `dev`
* `mlib`
* `external`
* `project`
* `streaming`
* `resource-managers`
* `python`
Split per srowen https://github.com/apache/spark/pull/30323#issuecomment-728981618
NOTE: The misspellings have been reported at 706a726f87 (commitcomment-44064356)
### Why are the changes needed?
Misspelled words make it harder to read / understand content.
### Does this PR introduce _any_ user-facing change?
There are various fixes to documentation, etc...
### How was this patch tested?
No testing was performed
Closes #30402 from jsoref/spelling-R_common_dev_mlib_external_project_streaming_resource-managers_python.
Authored-by: Josh Soref <jsoref@users.noreply.github.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
661 lines
20 KiB
Python
661 lines
20 KiB
Python
#
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# Licensed to the Apache Software Foundation (ASF) under one or more
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# contributor license agreements. See the NOTICE file distributed with
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# this work for additional information regarding copyright ownership.
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# The ASF licenses this file to You under the Apache License, Version 2.0
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# (the "License"); you may not use this file except in compliance with
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# the License. You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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#
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import sys
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from pyspark import since
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from pyspark.mllib.common import JavaModelWrapper, callMLlibFunc
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from pyspark.sql import SQLContext
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from pyspark.sql.types import ArrayType, StructField, StructType, DoubleType
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__all__ = ['BinaryClassificationMetrics', 'RegressionMetrics',
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'MulticlassMetrics', 'RankingMetrics']
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class BinaryClassificationMetrics(JavaModelWrapper):
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"""
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Evaluator for binary classification.
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.. versionadded:: 1.4.0
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Parameters
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----------
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scoreAndLabels : :py:class:`pyspark.RDD`
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an RDD of score, label and optional weight.
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Examples
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--------
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>>> scoreAndLabels = sc.parallelize([
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... (0.1, 0.0), (0.1, 1.0), (0.4, 0.0), (0.6, 0.0), (0.6, 1.0), (0.6, 1.0), (0.8, 1.0)], 2)
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>>> metrics = BinaryClassificationMetrics(scoreAndLabels)
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>>> metrics.areaUnderROC
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0.70...
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>>> metrics.areaUnderPR
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0.83...
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>>> metrics.unpersist()
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>>> scoreAndLabelsWithOptWeight = sc.parallelize([
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... (0.1, 0.0, 1.0), (0.1, 1.0, 0.4), (0.4, 0.0, 0.2), (0.6, 0.0, 0.6), (0.6, 1.0, 0.9),
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... (0.6, 1.0, 0.5), (0.8, 1.0, 0.7)], 2)
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>>> metrics = BinaryClassificationMetrics(scoreAndLabelsWithOptWeight)
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>>> metrics.areaUnderROC
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0.79...
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>>> metrics.areaUnderPR
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0.88...
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"""
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def __init__(self, scoreAndLabels):
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sc = scoreAndLabels.ctx
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sql_ctx = SQLContext.getOrCreate(sc)
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numCol = len(scoreAndLabels.first())
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schema = StructType([
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StructField("score", DoubleType(), nullable=False),
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StructField("label", DoubleType(), nullable=False)])
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if numCol == 3:
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schema.add("weight", DoubleType(), False)
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df = sql_ctx.createDataFrame(scoreAndLabels, schema=schema)
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java_class = sc._jvm.org.apache.spark.mllib.evaluation.BinaryClassificationMetrics
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java_model = java_class(df._jdf)
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super(BinaryClassificationMetrics, self).__init__(java_model)
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@property
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@since('1.4.0')
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def areaUnderROC(self):
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"""
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Computes the area under the receiver operating characteristic
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(ROC) curve.
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"""
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return self.call("areaUnderROC")
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@property
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@since('1.4.0')
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def areaUnderPR(self):
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"""
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Computes the area under the precision-recall curve.
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"""
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return self.call("areaUnderPR")
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@since('1.4.0')
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def unpersist(self):
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"""
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Unpersists intermediate RDDs used in the computation.
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"""
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self.call("unpersist")
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class RegressionMetrics(JavaModelWrapper):
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"""
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Evaluator for regression.
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.. versionadded:: 1.4.0
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Parameters
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----------
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predictionAndObservations : :py:class:`pyspark.RDD`
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an RDD of prediction, observation and optional weight.
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Examples
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--------
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>>> predictionAndObservations = sc.parallelize([
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... (2.5, 3.0), (0.0, -0.5), (2.0, 2.0), (8.0, 7.0)])
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>>> metrics = RegressionMetrics(predictionAndObservations)
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>>> metrics.explainedVariance
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8.859...
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>>> metrics.meanAbsoluteError
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0.5...
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>>> metrics.meanSquaredError
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0.37...
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>>> metrics.rootMeanSquaredError
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0.61...
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>>> metrics.r2
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0.94...
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>>> predictionAndObservationsWithOptWeight = sc.parallelize([
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... (2.5, 3.0, 0.5), (0.0, -0.5, 1.0), (2.0, 2.0, 0.3), (8.0, 7.0, 0.9)])
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>>> metrics = RegressionMetrics(predictionAndObservationsWithOptWeight)
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>>> metrics.rootMeanSquaredError
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0.68...
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"""
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def __init__(self, predictionAndObservations):
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sc = predictionAndObservations.ctx
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sql_ctx = SQLContext.getOrCreate(sc)
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numCol = len(predictionAndObservations.first())
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schema = StructType([
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StructField("prediction", DoubleType(), nullable=False),
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StructField("observation", DoubleType(), nullable=False)])
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if numCol == 3:
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schema.add("weight", DoubleType(), False)
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df = sql_ctx.createDataFrame(predictionAndObservations, schema=schema)
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java_class = sc._jvm.org.apache.spark.mllib.evaluation.RegressionMetrics
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java_model = java_class(df._jdf)
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super(RegressionMetrics, self).__init__(java_model)
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@property
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@since('1.4.0')
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def explainedVariance(self):
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r"""
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Returns the explained variance regression score.
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explainedVariance = :math:`1 - \frac{variance(y - \hat{y})}{variance(y)}`
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"""
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return self.call("explainedVariance")
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@property
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@since('1.4.0')
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def meanAbsoluteError(self):
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"""
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Returns the mean absolute error, which is a risk function corresponding to the
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expected value of the absolute error loss or l1-norm loss.
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"""
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return self.call("meanAbsoluteError")
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@property
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@since('1.4.0')
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def meanSquaredError(self):
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"""
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Returns the mean squared error, which is a risk function corresponding to the
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expected value of the squared error loss or quadratic loss.
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"""
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return self.call("meanSquaredError")
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@property
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@since('1.4.0')
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def rootMeanSquaredError(self):
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"""
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Returns the root mean squared error, which is defined as the square root of
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the mean squared error.
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"""
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return self.call("rootMeanSquaredError")
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@property
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@since('1.4.0')
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def r2(self):
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"""
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Returns R^2^, the coefficient of determination.
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"""
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return self.call("r2")
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class MulticlassMetrics(JavaModelWrapper):
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"""
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Evaluator for multiclass classification.
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.. versionadded:: 1.4.0
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Parameters
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----------
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predictionAndLabels : :py:class:`pyspark.RDD`
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an RDD of prediction, label, optional weight and optional probability.
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Examples
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--------
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>>> predictionAndLabels = sc.parallelize([(0.0, 0.0), (0.0, 1.0), (0.0, 0.0),
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... (1.0, 0.0), (1.0, 1.0), (1.0, 1.0), (1.0, 1.0), (2.0, 2.0), (2.0, 0.0)])
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>>> metrics = MulticlassMetrics(predictionAndLabels)
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>>> metrics.confusionMatrix().toArray()
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array([[ 2., 1., 1.],
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[ 1., 3., 0.],
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[ 0., 0., 1.]])
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>>> metrics.falsePositiveRate(0.0)
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0.2...
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>>> metrics.precision(1.0)
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0.75...
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>>> metrics.recall(2.0)
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1.0...
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>>> metrics.fMeasure(0.0, 2.0)
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0.52...
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>>> metrics.accuracy
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0.66...
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>>> metrics.weightedFalsePositiveRate
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0.19...
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>>> metrics.weightedPrecision
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0.68...
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>>> metrics.weightedRecall
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0.66...
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>>> metrics.weightedFMeasure()
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0.66...
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>>> metrics.weightedFMeasure(2.0)
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0.65...
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>>> predAndLabelsWithOptWeight = sc.parallelize([(0.0, 0.0, 1.0), (0.0, 1.0, 1.0),
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... (0.0, 0.0, 1.0), (1.0, 0.0, 1.0), (1.0, 1.0, 1.0), (1.0, 1.0, 1.0), (1.0, 1.0, 1.0),
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... (2.0, 2.0, 1.0), (2.0, 0.0, 1.0)])
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>>> metrics = MulticlassMetrics(predAndLabelsWithOptWeight)
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>>> metrics.confusionMatrix().toArray()
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array([[ 2., 1., 1.],
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[ 1., 3., 0.],
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[ 0., 0., 1.]])
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>>> metrics.falsePositiveRate(0.0)
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0.2...
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>>> metrics.precision(1.0)
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0.75...
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>>> metrics.recall(2.0)
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1.0...
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>>> metrics.fMeasure(0.0, 2.0)
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0.52...
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>>> metrics.accuracy
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0.66...
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>>> metrics.weightedFalsePositiveRate
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0.19...
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>>> metrics.weightedPrecision
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0.68...
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>>> metrics.weightedRecall
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0.66...
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>>> metrics.weightedFMeasure()
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0.66...
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>>> metrics.weightedFMeasure(2.0)
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0.65...
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>>> predictionAndLabelsWithProbabilities = sc.parallelize([
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... (1.0, 1.0, 1.0, [0.1, 0.8, 0.1]), (0.0, 2.0, 1.0, [0.9, 0.05, 0.05]),
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... (0.0, 0.0, 1.0, [0.8, 0.2, 0.0]), (1.0, 1.0, 1.0, [0.3, 0.65, 0.05])])
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>>> metrics = MulticlassMetrics(predictionAndLabelsWithProbabilities)
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>>> metrics.logLoss()
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0.9682...
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"""
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def __init__(self, predictionAndLabels):
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sc = predictionAndLabels.ctx
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sql_ctx = SQLContext.getOrCreate(sc)
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numCol = len(predictionAndLabels.first())
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schema = StructType([
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StructField("prediction", DoubleType(), nullable=False),
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StructField("label", DoubleType(), nullable=False)])
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if numCol >= 3:
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schema.add("weight", DoubleType(), False)
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if numCol == 4:
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schema.add("probability", ArrayType(DoubleType(), False), False)
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df = sql_ctx.createDataFrame(predictionAndLabels, schema)
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java_class = sc._jvm.org.apache.spark.mllib.evaluation.MulticlassMetrics
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java_model = java_class(df._jdf)
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super(MulticlassMetrics, self).__init__(java_model)
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@since('1.4.0')
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def confusionMatrix(self):
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"""
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Returns confusion matrix: predicted classes are in columns,
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they are ordered by class label ascending, as in "labels".
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"""
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return self.call("confusionMatrix")
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@since('1.4.0')
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def truePositiveRate(self, label):
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"""
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Returns true positive rate for a given label (category).
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"""
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return self.call("truePositiveRate", label)
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@since('1.4.0')
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def falsePositiveRate(self, label):
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"""
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Returns false positive rate for a given label (category).
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"""
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return self.call("falsePositiveRate", label)
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@since('1.4.0')
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def precision(self, label):
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"""
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Returns precision.
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"""
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return self.call("precision", float(label))
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@since('1.4.0')
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def recall(self, label):
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"""
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Returns recall.
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"""
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return self.call("recall", float(label))
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@since('1.4.0')
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def fMeasure(self, label, beta=None):
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"""
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Returns f-measure.
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"""
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if beta is None:
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return self.call("fMeasure", label)
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else:
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return self.call("fMeasure", label, beta)
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@property
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@since('2.0.0')
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def accuracy(self):
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"""
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Returns accuracy (equals to the total number of correctly classified instances
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out of the total number of instances).
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"""
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return self.call("accuracy")
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@property
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@since('1.4.0')
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def weightedTruePositiveRate(self):
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"""
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Returns weighted true positive rate.
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(equals to precision, recall and f-measure)
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"""
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return self.call("weightedTruePositiveRate")
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@property
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@since('1.4.0')
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def weightedFalsePositiveRate(self):
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"""
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Returns weighted false positive rate.
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"""
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return self.call("weightedFalsePositiveRate")
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@property
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@since('1.4.0')
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def weightedRecall(self):
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"""
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Returns weighted averaged recall.
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(equals to precision, recall and f-measure)
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"""
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return self.call("weightedRecall")
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@property
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@since('1.4.0')
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def weightedPrecision(self):
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"""
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Returns weighted averaged precision.
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"""
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return self.call("weightedPrecision")
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@since('1.4.0')
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def weightedFMeasure(self, beta=None):
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"""
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Returns weighted averaged f-measure.
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"""
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if beta is None:
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return self.call("weightedFMeasure")
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else:
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return self.call("weightedFMeasure", beta)
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@since('3.0.0')
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def logLoss(self, eps=1e-15):
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"""
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Returns weighted logLoss.
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"""
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return self.call("logLoss", eps)
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class RankingMetrics(JavaModelWrapper):
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"""
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Evaluator for ranking algorithms.
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.. versionadded:: 1.4.0
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Parameters
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----------
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predictionAndLabels : :py:class:`pyspark.RDD`
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an RDD of (predicted ranking, ground truth set) pairs.
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Examples
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--------
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>>> predictionAndLabels = sc.parallelize([
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... ([1, 6, 2, 7, 8, 3, 9, 10, 4, 5], [1, 2, 3, 4, 5]),
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... ([4, 1, 5, 6, 2, 7, 3, 8, 9, 10], [1, 2, 3]),
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... ([1, 2, 3, 4, 5], [])])
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>>> metrics = RankingMetrics(predictionAndLabels)
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>>> metrics.precisionAt(1)
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0.33...
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>>> metrics.precisionAt(5)
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0.26...
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>>> metrics.precisionAt(15)
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0.17...
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>>> metrics.meanAveragePrecision
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0.35...
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>>> metrics.meanAveragePrecisionAt(1)
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0.3333333333333333...
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>>> metrics.meanAveragePrecisionAt(2)
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0.25...
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>>> metrics.ndcgAt(3)
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0.33...
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>>> metrics.ndcgAt(10)
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0.48...
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>>> metrics.recallAt(1)
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0.06...
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>>> metrics.recallAt(5)
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0.35...
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>>> metrics.recallAt(15)
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0.66...
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"""
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def __init__(self, predictionAndLabels):
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sc = predictionAndLabels.ctx
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sql_ctx = SQLContext.getOrCreate(sc)
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df = sql_ctx.createDataFrame(predictionAndLabels,
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schema=sql_ctx._inferSchema(predictionAndLabels))
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java_model = callMLlibFunc("newRankingMetrics", df._jdf)
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super(RankingMetrics, self).__init__(java_model)
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@since('1.4.0')
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def precisionAt(self, k):
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"""
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Compute the average precision of all the queries, truncated at ranking position k.
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If for a query, the ranking algorithm returns n (n < k) results, the precision value
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will be computed as #(relevant items retrieved) / k. This formula also applies when
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the size of the ground truth set is less than k.
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If a query has an empty ground truth set, zero will be used as precision together
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with a log warning.
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"""
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return self.call("precisionAt", int(k))
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@property
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@since('1.4.0')
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def meanAveragePrecision(self):
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"""
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Returns the mean average precision (MAP) of all the queries.
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If a query has an empty ground truth set, the average precision will be zero and
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a log warning is generated.
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"""
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return self.call("meanAveragePrecision")
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@since('3.0.0')
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def meanAveragePrecisionAt(self, k):
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"""
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Returns the mean average precision (MAP) at first k ranking of all the queries.
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If a query has an empty ground truth set, the average precision will be zero and
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a log warning is generated.
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"""
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return self.call("meanAveragePrecisionAt", int(k))
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@since('1.4.0')
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def ndcgAt(self, k):
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"""
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Compute the average NDCG value of all the queries, truncated at ranking position k.
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The discounted cumulative gain at position k is computed as:
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sum,,i=1,,^k^ (2^{relevance of ''i''th item}^ - 1) / log(i + 1),
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and the NDCG is obtained by dividing the DCG value on the ground truth set.
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In the current implementation, the relevance value is binary.
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If a query has an empty ground truth set, zero will be used as NDCG together with
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a log warning.
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"""
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return self.call("ndcgAt", int(k))
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@since('3.0.0')
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def recallAt(self, k):
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"""
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Compute the average recall of all the queries, truncated at ranking position k.
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If for a query, the ranking algorithm returns n results, the recall value
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will be computed as #(relevant items retrieved) / #(ground truth set).
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This formula also applies when the size of the ground truth set is less than k.
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If a query has an empty ground truth set, zero will be used as recall together
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with a log warning.
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"""
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return self.call("recallAt", int(k))
|
|
|
|
|
|
class MultilabelMetrics(JavaModelWrapper):
|
|
"""
|
|
Evaluator for multilabel classification.
|
|
|
|
.. versionadded:: 1.4.0
|
|
|
|
Parameters
|
|
----------
|
|
predictionAndLabels : :py:class:`pyspark.RDD`
|
|
an RDD of (predictions, labels) pairs,
|
|
both are non-null Arrays, each with unique elements.
|
|
|
|
Examples
|
|
--------
|
|
>>> predictionAndLabels = sc.parallelize([([0.0, 1.0], [0.0, 2.0]), ([0.0, 2.0], [0.0, 1.0]),
|
|
... ([], [0.0]), ([2.0], [2.0]), ([2.0, 0.0], [2.0, 0.0]),
|
|
... ([0.0, 1.0, 2.0], [0.0, 1.0]), ([1.0], [1.0, 2.0])])
|
|
>>> metrics = MultilabelMetrics(predictionAndLabels)
|
|
>>> metrics.precision(0.0)
|
|
1.0
|
|
>>> metrics.recall(1.0)
|
|
0.66...
|
|
>>> metrics.f1Measure(2.0)
|
|
0.5
|
|
>>> metrics.precision()
|
|
0.66...
|
|
>>> metrics.recall()
|
|
0.64...
|
|
>>> metrics.f1Measure()
|
|
0.63...
|
|
>>> metrics.microPrecision
|
|
0.72...
|
|
>>> metrics.microRecall
|
|
0.66...
|
|
>>> metrics.microF1Measure
|
|
0.69...
|
|
>>> metrics.hammingLoss
|
|
0.33...
|
|
>>> metrics.subsetAccuracy
|
|
0.28...
|
|
>>> metrics.accuracy
|
|
0.54...
|
|
"""
|
|
|
|
def __init__(self, predictionAndLabels):
|
|
sc = predictionAndLabels.ctx
|
|
sql_ctx = SQLContext.getOrCreate(sc)
|
|
df = sql_ctx.createDataFrame(predictionAndLabels,
|
|
schema=sql_ctx._inferSchema(predictionAndLabels))
|
|
java_class = sc._jvm.org.apache.spark.mllib.evaluation.MultilabelMetrics
|
|
java_model = java_class(df._jdf)
|
|
super(MultilabelMetrics, self).__init__(java_model)
|
|
|
|
@since('1.4.0')
|
|
def precision(self, label=None):
|
|
"""
|
|
Returns precision or precision for a given label (category) if specified.
|
|
"""
|
|
if label is None:
|
|
return self.call("precision")
|
|
else:
|
|
return self.call("precision", float(label))
|
|
|
|
@since('1.4.0')
|
|
def recall(self, label=None):
|
|
"""
|
|
Returns recall or recall for a given label (category) if specified.
|
|
"""
|
|
if label is None:
|
|
return self.call("recall")
|
|
else:
|
|
return self.call("recall", float(label))
|
|
|
|
@since('1.4.0')
|
|
def f1Measure(self, label=None):
|
|
"""
|
|
Returns f1Measure or f1Measure for a given label (category) if specified.
|
|
"""
|
|
if label is None:
|
|
return self.call("f1Measure")
|
|
else:
|
|
return self.call("f1Measure", float(label))
|
|
|
|
@property
|
|
@since('1.4.0')
|
|
def microPrecision(self):
|
|
"""
|
|
Returns micro-averaged label-based precision.
|
|
(equals to micro-averaged document-based precision)
|
|
"""
|
|
return self.call("microPrecision")
|
|
|
|
@property
|
|
@since('1.4.0')
|
|
def microRecall(self):
|
|
"""
|
|
Returns micro-averaged label-based recall.
|
|
(equals to micro-averaged document-based recall)
|
|
"""
|
|
return self.call("microRecall")
|
|
|
|
@property
|
|
@since('1.4.0')
|
|
def microF1Measure(self):
|
|
"""
|
|
Returns micro-averaged label-based f1-measure.
|
|
(equals to micro-averaged document-based f1-measure)
|
|
"""
|
|
return self.call("microF1Measure")
|
|
|
|
@property
|
|
@since('1.4.0')
|
|
def hammingLoss(self):
|
|
"""
|
|
Returns Hamming-loss.
|
|
"""
|
|
return self.call("hammingLoss")
|
|
|
|
@property
|
|
@since('1.4.0')
|
|
def subsetAccuracy(self):
|
|
"""
|
|
Returns subset accuracy.
|
|
(for equal sets of labels)
|
|
"""
|
|
return self.call("subsetAccuracy")
|
|
|
|
@property
|
|
@since('1.4.0')
|
|
def accuracy(self):
|
|
"""
|
|
Returns accuracy.
|
|
"""
|
|
return self.call("accuracy")
|
|
|
|
|
|
def _test():
|
|
import doctest
|
|
import numpy
|
|
from pyspark.sql import SparkSession
|
|
import pyspark.mllib.evaluation
|
|
try:
|
|
# Numpy 1.14+ changed it's string format.
|
|
numpy.set_printoptions(legacy='1.13')
|
|
except TypeError:
|
|
pass
|
|
globs = pyspark.mllib.evaluation.__dict__.copy()
|
|
spark = SparkSession.builder\
|
|
.master("local[4]")\
|
|
.appName("mllib.evaluation tests")\
|
|
.getOrCreate()
|
|
globs['sc'] = spark.sparkContext
|
|
(failure_count, test_count) = doctest.testmod(globs=globs, optionflags=doctest.ELLIPSIS)
|
|
spark.stop()
|
|
if failure_count:
|
|
sys.exit(-1)
|
|
|
|
|
|
if __name__ == "__main__":
|
|
_test()
|