spark-instrumented-optimizer/python/pyspark/ml/wrapper.py
Joseph K. Bradley 7e3423b9c0 [SPARK-13951][ML][PYTHON] Nested Pipeline persistence
Adds support for saving and loading nested ML Pipelines from Python.  Pipeline and PipelineModel do not extend JavaWrapper, but they are able to utilize the JavaMLWriter, JavaMLReader implementations.

Also:
* Separates out interfaces from Java wrapper implementations for MLWritable, MLReadable, MLWriter, MLReader.
* Moves methods _stages_java2py, _stages_py2java into Pipeline, PipelineModel as _transfer_stage_from_java, _transfer_stage_to_java

Added new unit test for nested Pipelines.  Abstracted validity check into a helper method for the 2 unit tests.

Author: Joseph K. Bradley <joseph@databricks.com>

Closes #11866 from jkbradley/nested-pipeline-io.
Closes #11835
2016-03-22 12:11:37 -07:00

245 lines
8.4 KiB
Python

#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use this file except in compliance with
# the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
from abc import ABCMeta, abstractmethod
from pyspark import SparkContext
from pyspark.sql import DataFrame
from pyspark.ml import Estimator, Transformer, Model
from pyspark.ml.param import Params
from pyspark.ml.util import _jvm
from pyspark.mllib.common import inherit_doc, _java2py, _py2java
@inherit_doc
class JavaWrapper(Params):
"""
Utility class to help create wrapper classes from Java/Scala
implementations of pipeline components.
"""
__metaclass__ = ABCMeta
def __init__(self):
"""
Initialize the wrapped java object to None
"""
super(JavaWrapper, self).__init__()
#: The wrapped Java companion object. Subclasses should initialize
#: it properly. The param values in the Java object should be
#: synced with the Python wrapper in fit/transform/evaluate/copy.
self._java_obj = None
@staticmethod
def _new_java_obj(java_class, *args):
"""
Construct a new Java object.
"""
sc = SparkContext._active_spark_context
java_obj = _jvm()
for name in java_class.split("."):
java_obj = getattr(java_obj, name)
java_args = [_py2java(sc, arg) for arg in args]
return java_obj(*java_args)
def _make_java_param_pair(self, param, value):
"""
Makes a Java parm pair.
"""
sc = SparkContext._active_spark_context
param = self._resolveParam(param)
java_param = self._java_obj.getParam(param.name)
java_value = _py2java(sc, value)
return java_param.w(java_value)
def _transfer_params_to_java(self):
"""
Transforms the embedded params to the companion Java object.
"""
paramMap = self.extractParamMap()
for param in self.params:
if param in paramMap:
pair = self._make_java_param_pair(param, paramMap[param])
self._java_obj.set(pair)
def _transfer_params_from_java(self):
"""
Transforms the embedded params from the companion Java object.
"""
sc = SparkContext._active_spark_context
for param in self.params:
if self._java_obj.hasParam(param.name):
java_param = self._java_obj.getParam(param.name)
if self._java_obj.isDefined(java_param):
value = _java2py(sc, self._java_obj.getOrDefault(java_param))
self._paramMap[param] = value
@staticmethod
def _empty_java_param_map():
"""
Returns an empty Java ParamMap reference.
"""
return _jvm().org.apache.spark.ml.param.ParamMap()
def _to_java(self):
"""
Transfer this instance's Params to the wrapped Java object, and return the Java object.
Used for ML persistence.
Meta-algorithms such as Pipeline should override this method.
:return: Java object equivalent to this instance.
"""
self._transfer_params_to_java()
return self._java_obj
@staticmethod
def _from_java(java_stage):
"""
Given a Java object, create and return a Python wrapper of it.
Used for ML persistence.
Meta-algorithms such as Pipeline should override this method as a classmethod.
"""
def __get_class(clazz):
"""
Loads Python class from its name.
"""
parts = clazz.split('.')
module = ".".join(parts[:-1])
m = __import__(module)
for comp in parts[1:]:
m = getattr(m, comp)
return m
stage_name = java_stage.getClass().getName().replace("org.apache.spark", "pyspark")
# Generate a default new instance from the stage_name class.
py_type = __get_class(stage_name)
if issubclass(py_type, JavaWrapper):
# Load information from java_stage to the instance.
py_stage = py_type()
py_stage._java_obj = java_stage
py_stage._resetUid(java_stage.uid())
py_stage._transfer_params_from_java()
elif hasattr(py_type, "_from_java"):
py_stage = py_type._from_java(java_stage)
else:
raise NotImplementedError("This Java stage cannot be loaded into Python currently: %r"
% stage_name)
return py_stage
@inherit_doc
class JavaEstimator(Estimator, JavaWrapper):
"""
Base class for :py:class:`Estimator`s that wrap Java/Scala
implementations.
"""
__metaclass__ = ABCMeta
@abstractmethod
def _create_model(self, java_model):
"""
Creates a model from the input Java model reference.
"""
raise NotImplementedError()
def _fit_java(self, dataset):
"""
Fits a Java model to the input dataset.
:param dataset: input dataset, which is an instance of
:py:class:`pyspark.sql.DataFrame`
:param params: additional params (overwriting embedded values)
:return: fitted Java model
"""
self._transfer_params_to_java()
return self._java_obj.fit(dataset._jdf)
def _fit(self, dataset):
java_model = self._fit_java(dataset)
return self._create_model(java_model)
@inherit_doc
class JavaTransformer(Transformer, JavaWrapper):
"""
Base class for :py:class:`Transformer`s that wrap Java/Scala
implementations. Subclasses should ensure they have the transformer Java object
available as _java_obj.
"""
__metaclass__ = ABCMeta
def _transform(self, dataset):
self._transfer_params_to_java()
return DataFrame(self._java_obj.transform(dataset._jdf), dataset.sql_ctx)
@inherit_doc
class JavaModel(Model, JavaTransformer):
"""
Base class for :py:class:`Model`s that wrap Java/Scala
implementations. Subclasses should inherit this class before
param mix-ins, because this sets the UID from the Java model.
"""
__metaclass__ = ABCMeta
def __init__(self, java_model=None):
"""
Initialize this instance with a Java model object.
Subclasses should call this constructor, initialize params,
and then call _transformer_params_from_java.
This instance can be instantiated without specifying java_model,
it will be assigned after that, but this scenario only used by
:py:class:`JavaMLReader` to load models. This is a bit of a
hack, but it is easiest since a proper fix would require
MLReader (in pyspark.ml.util) to depend on these wrappers, but
these wrappers depend on pyspark.ml.util (both directly and via
other ML classes).
"""
super(JavaModel, self).__init__()
if java_model is not None:
self._java_obj = java_model
self.uid = java_model.uid()
def copy(self, extra=None):
"""
Creates a copy of this instance with the same uid and some
extra params. This implementation first calls Params.copy and
then make a copy of the companion Java model with extra params.
So both the Python wrapper and the Java model get copied.
:param extra: Extra parameters to copy to the new instance
:return: Copy of this instance
"""
if extra is None:
extra = dict()
that = super(JavaModel, self).copy(extra)
if self._java_obj is not None:
that._java_obj = self._java_obj.copy(self._empty_java_param_map())
that._transfer_params_to_java()
return that
def _call_java(self, name, *args):
m = getattr(self._java_obj, name)
sc = SparkContext._active_spark_context
java_args = [_py2java(sc, arg) for arg in args]
return _java2py(sc, m(*java_args))