Apache Spark - A unified analytics engine for large-scale data processing
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Sean Owen 2b7bd29eb6 SPARK-1789. Multiple versions of Netty dependencies cause FlumeStreamSuite failure
TL;DR is there is a bit of JAR hell trouble with Netty, that can be mostly resolved and will resolve a test failure.

I hit the error described at http://apache-spark-user-list.1001560.n3.nabble.com/SparkContext-startup-time-out-td1753.html while running FlumeStreamingSuite, and have for a short while (is it just me?)

velvia notes:
"I have found a workaround.  If you add akka 2.2.4 to your dependencies, then everything works, probably because akka 2.2.4 brings in newer version of Jetty."

There are at least 3 versions of Netty in play in the build:

- the new Flume 1.4.0 dependency brings in io.netty:netty:3.4.0.Final, and that is the immediate problem
- the custom version of akka 2.2.3 depends on io.netty:netty:3.6.6.
- but, Spark Core directly uses io.netty:netty-all:4.0.17.Final

The POMs try to exclude other versions of netty, but are excluding org.jboss.netty:netty, when in fact older versions of io.netty:netty (not netty-all) are also an issue.

The org.jboss.netty:netty excludes are largely unnecessary. I replaced many of them with io.netty:netty exclusions until everything agreed on io.netty:netty-all:4.0.17.Final.

But this didn't work, since Akka 2.2.3 doesn't work with Netty 4.x. Down-grading to 3.6.6.Final across the board made some Spark code not compile.

If the build *keeps* io.netty:netty:3.6.6.Final as well, everything seems to work. Part of the reason seems to be that Netty 3.x used the old `org.jboss.netty` packages. This is less than ideal, but is no worse than the current situation.

So this PR resolves the issue and improves the JAR hell, even if it leaves the existing theoretical Netty 3-vs-4 conflict:

- Remove org.jboss.netty excludes where possible, for clarity; they're not needed except with Hadoop artifacts
- Add io.netty:netty excludes where needed -- except, let akka keep its io.netty:netty
- Change a bit of test code that actually depended on Netty 3.x, to use 4.x equivalent
- Update SBT build accordingly

A better change would be to update Akka far enough such that it agrees on Netty 4.x, but I don't know if that's feasible.

Author: Sean Owen <sowen@cloudera.com>

Closes #723 from srowen/SPARK-1789 and squashes the following commits:

43661b7 [Sean Owen] Update and add Netty excludes to prevent some JAR conflicts that cause test issues
2014-05-10 20:50:40 -07:00
assembly [SPARK-1644] The org.datanucleus:* should not be packaged into spark-assembly-*.jar 2014-05-10 10:15:04 -07:00
bagel Improved build configuration 2014-04-28 22:51:46 -07:00
bin SPARK-1565 (Addendum): Replace run-example with spark-submit. 2014-05-08 22:26:36 -07:00
conf Assorted clean-up for Spark-on-YARN. 2014-04-22 19:22:06 -07:00
core SPARK-1789. Multiple versions of Netty dependencies cause FlumeStreamSuite failure 2014-05-10 20:50:40 -07:00
data moved user scripts to bin folder 2013-09-23 12:46:48 +08:00
dev HOTFIX: minor change to release script 2014-04-29 00:59:38 -07:00
docker [SPARK-1342] Scala 2.10.4 2014-04-01 18:35:50 -07:00
docs Unify GraphImpl RDDs + other graph load optimizations 2014-05-10 14:48:07 -07:00
ec2 Address SPARK-1717 2014-05-04 21:59:10 -07:00
examples SPARK-1789. Multiple versions of Netty dependencies cause FlumeStreamSuite failure 2014-05-10 20:50:40 -07:00
external SPARK-1789. Multiple versions of Netty dependencies cause FlumeStreamSuite failure 2014-05-10 20:50:40 -07:00
extras SPARK-1695: java8-tests compiler error: package com.google.common.co... 2014-05-02 12:40:27 -07:00
graphx Unify GraphImpl RDDs + other graph load optimizations 2014-05-10 14:48:07 -07:00
mllib Bug fix of sparse vector conversion 2014-05-08 17:54:10 -07:00
project SPARK-1789. Multiple versions of Netty dependencies cause FlumeStreamSuite failure 2014-05-10 20:50:40 -07:00
python [SPARK-1690] Tolerating empty elements when saving Python RDD to text files 2014-05-10 14:01:08 -07:00
repl [SPARK-1549] Add Python support to spark-submit 2014-05-06 15:12:35 -07:00
sbin Include the sbin/spark-config.sh in spark-executor 2014-05-08 20:43:37 -07:00
sbt [SQL] Un-ignore a test that is now passing. 2014-03-26 18:19:15 -07:00
sql SPARK-1708. Add a ClassTag on Serializer and things that depend on it 2014-05-10 12:10:24 -07:00
streaming SPARK-1637: Clean up examples for 1.0 2014-05-06 17:27:52 -07:00
tools Improved build configuration 2014-04-28 22:51:46 -07:00
yarn [SPARK-1631] Correctly set the Yarn app name when launching the AM. 2014-05-08 20:46:11 -07:00
.gitignore SPARK-1565, update examples to be used with spark-submit script. 2014-05-08 10:23:05 -07:00
.rat-excludes Clean up and simplify Spark configuration 2014-04-21 10:26:33 -07:00
.travis.yml Cut down the granularity of travis tests. 2014-03-27 08:53:42 -07:00
LICENSE Merge the old sbt-launch-lib.bash with the new sbt-launcher jar downloading logic. 2014-03-02 00:35:23 -08:00
make-distribution.sh SPARK-1565 (Addendum): Replace run-example with spark-submit. 2014-05-08 22:26:36 -07:00
NOTICE [SPARK-1212] Adding sparse data support and update KMeans 2014-03-23 17:34:02 -07:00
pom.xml SPARK-1789. Multiple versions of Netty dependencies cause FlumeStreamSuite failure 2014-05-10 20:50:40 -07:00
README.md SPARK-1565 (Addendum): Replace run-example with spark-submit. 2014-05-08 22:26:36 -07:00
scalastyle-config.xml SPARK-1096, a space after comment start style checker. 2014-03-28 00:21:49 -07:00

Apache Spark

Lightning-Fast Cluster Computing - http://spark.apache.org/

Online Documentation

You can find the latest Spark documentation, including a programming guide, on the project webpage at http://spark.apache.org/documentation.html. This README file only contains basic setup instructions.

Building Spark

Spark is built on Scala 2.10. To build Spark and its example programs, run:

./sbt/sbt assembly

Interactive Scala Shell

The easiest way to start using Spark is through the Scala shell:

./bin/spark-shell

Try the following command, which should return 1000:

scala> sc.parallelize(1 to 1000).count()

Interactive Python Shell

Alternatively, if you prefer Python, you can use the Python shell:

./bin/pyspark

And run the following command, which should also return 1000:

>>> sc.parallelize(range(1000)).count()

Example Programs

Spark also comes with several sample programs in the examples directory. To run one of them, use ./bin/run-example <class> [params]. For example:

./bin/run-example org.apache.spark.examples.SparkLR

will run the Logistic Regression example locally.

You can set the MASTER environment variable when running examples to submit examples to a cluster. This can be a mesos:// or spark:// URL, "yarn-cluster" or "yarn-client" to run on YARN, and "local" to run locally with one thread, or "local[N]" to run locally with N threads. You can also use an abbreviated class name if the class is in the examples package. For instance:

MASTER=spark://host:7077 ./bin/run-example SparkPi

Many of the example programs print usage help if no params are given.

Running Tests

Testing first requires building Spark. Once Spark is built, tests can be run using:

./sbt/sbt test

A Note About Hadoop Versions

Spark uses the Hadoop core library to talk to HDFS and other Hadoop-supported storage systems. Because the protocols have changed in different versions of Hadoop, you must build Spark against the same version that your cluster runs. You can change the version by setting the SPARK_HADOOP_VERSION environment when building Spark.

For Apache Hadoop versions 1.x, Cloudera CDH MRv1, and other Hadoop versions without YARN, use:

# Apache Hadoop 1.2.1
$ SPARK_HADOOP_VERSION=1.2.1 sbt/sbt assembly

# Cloudera CDH 4.2.0 with MapReduce v1
$ SPARK_HADOOP_VERSION=2.0.0-mr1-cdh4.2.0 sbt/sbt assembly

For Apache Hadoop 2.2.X, 2.1.X, 2.0.X, 0.23.x, Cloudera CDH MRv2, and other Hadoop versions with YARN, also set SPARK_YARN=true:

# Apache Hadoop 2.0.5-alpha
$ SPARK_HADOOP_VERSION=2.0.5-alpha SPARK_YARN=true sbt/sbt assembly

# Cloudera CDH 4.2.0 with MapReduce v2
$ SPARK_HADOOP_VERSION=2.0.0-cdh4.2.0 SPARK_YARN=true sbt/sbt assembly

# Apache Hadoop 2.2.X and newer
$ SPARK_HADOOP_VERSION=2.2.0 SPARK_YARN=true sbt/sbt assembly

When developing a Spark application, specify the Hadoop version by adding the "hadoop-client" artifact to your project's dependencies. For example, if you're using Hadoop 1.2.1 and build your application using SBT, add this entry to libraryDependencies:

"org.apache.hadoop" % "hadoop-client" % "1.2.1"

If your project is built with Maven, add this to your POM file's <dependencies> section:

<dependency>
  <groupId>org.apache.hadoop</groupId>
  <artifactId>hadoop-client</artifactId>
  <version>1.2.1</version>
</dependency>

Configuration

Please refer to the Configuration guide in the online documentation for an overview on how to configure Spark.

Contributing to Spark

Contributions via GitHub pull requests are gladly accepted from their original author. Along with any pull requests, please state that the contribution is your original work and that you license the work to the project under the project's open source license. Whether or not you state this explicitly, by submitting any copyrighted material via pull request, email, or other means you agree to license the material under the project's open source license and warrant that you have the legal authority to do so.