Apache Spark - A unified analytics engine for large-scale data processing
Go to file
Felix Cheung 3180272d2d [SPARKR] fix warnings
## What changes were proposed in this pull request?

Fix for a bunch of test warnings that were added recently.
We need to investigate why warnings are not turning into errors.

```
Warnings -----------------------------------------------------------------------
1. createDataFrame uses files for large objects (test_sparkSQL.R#215) - Use Sepal_Length instead of Sepal.Length  as column name

2. createDataFrame uses files for large objects (test_sparkSQL.R#215) - Use Sepal_Width instead of Sepal.Width  as column name

3. createDataFrame uses files for large objects (test_sparkSQL.R#215) - Use Petal_Length instead of Petal.Length  as column name

4. createDataFrame uses files for large objects (test_sparkSQL.R#215) - Use Petal_Width instead of Petal.Width  as column name

Consider adding
  importFrom("utils", "object.size")
to your NAMESPACE file.
```

## How was this patch tested?

unit tests

Author: Felix Cheung <felixcheung_m@hotmail.com>

Closes #15560 from felixcheung/rwarnings.
2016-10-20 21:12:55 -07:00
.github [SPARK-17840][DOCS] Add some pointers for wiki/CONTRIBUTING.md in README.md and some warnings in PULL_REQUEST_TEMPLATE 2016-10-12 11:14:03 -07:00
assembly [SPARK-16967] move mesos to module 2016-08-26 12:25:22 -07:00
bin [SPARK-16781][PYSPARK] java launched by PySpark as gateway may not be the same java used in the spark environment 2016-08-24 20:04:09 +01:00
build [SPARK-14279][BUILD] Pick the spark version from pom 2016-06-06 09:42:50 -07:00
common [SPARK-17800] Introduce InterfaceStability annotation 2016-10-07 10:24:42 -07:00
conf [SPARK-11653][DEPLOY] Allow spark-daemon.sh to run in the foreground 2016-10-20 09:49:58 +01:00
core [SPARK-18003][SPARK CORE] Fix bug of RDD zipWithIndex & zipWithUniqueId index value overflowing 2016-10-19 23:41:38 -07:00
data [SPARK-16421][EXAMPLES][ML] Improve ML Example Outputs 2016-08-05 20:57:46 +01:00
dev [SPARK-17985][CORE] Bump commons-lang3 version to 3.5. 2016-10-19 10:06:43 +01:00
docs [DOCS] Update docs to not suggest to package Spark before running tests. 2016-10-20 15:30:01 -07:00
examples Fix example of tf_idf with minDocFreq 2016-10-17 10:56:22 +01:00
external [SPARK-17999][KAFKA][SQL] Add getPreferredLocations for KafkaSourceRDD 2016-10-20 10:50:34 -07:00
graphx [SPARK-11496][GRAPHX] Parallel implementation of personalized pagerank 2016-09-10 00:15:59 -07:00
launcher [SPARK-17178][SPARKR][SPARKSUBMIT] Allow to set sparkr shell command through --conf 2016-08-31 00:20:41 -07:00
licenses [MINOR][BUILD] Add modernizr MIT license; specify "2014 and onwards" in license copyright 2016-06-04 21:41:27 +01:00
mesos [SPARK-14082][MESOS] Enable GPU support with Mesos 2016-10-10 23:20:15 +02:00
mllib [SPARK-18021][SQL] Refactor file name specification for data sources 2016-10-20 12:18:56 -07:00
mllib-local [SPARK-17721][MLLIB][ML] Fix for multiplying transposed SparseMatrix with SparseVector 2016-09-29 15:39:57 -07:00
project [SPARK-17731][SQL][STREAMING][FOLLOWUP] Refactored StreamingQueryListener APIs 2016-10-18 17:32:16 -07:00
python [SPARK-17817] [PYSPARK] [FOLLOWUP] PySpark RDD Repartitioning Results in Highly Skewed Partition Sizes 2016-10-18 14:25:10 -07:00
R [SPARKR] fix warnings 2016-10-20 21:12:55 -07:00
repl [SPARK-17720][SQL] introduce static SQL conf 2016-10-11 20:27:08 -07:00
sbin [SPARK-11653][DEPLOY] Allow spark-daemon.sh to run in the foreground 2016-10-20 09:49:58 +01:00
sql [SPARK-18030][TESTS] Adds more checks to collect more info about FileStreamSourceSuite failure 2016-10-20 20:44:32 -07:00
streaming [SPARK-17638][STREAMING] Stop JVM StreamingContext when the Python process is dead 2016-09-22 14:26:45 -07:00
tools [SPARK-16535][BUILD] In pom.xml, remove groupId which is redundant definition and inherited from the parent 2016-07-19 11:59:46 +01:00
yarn [SPARK-16757] Set up Spark caller context to HDFS and YARN 2016-09-27 08:10:38 -05:00
.gitattributes [SPARK-3870] EOL character enforcement 2014-10-31 12:39:52 -07:00
.gitignore [MINOR][SPARKR] Add sparkr-vignettes.html to gitignore. 2016-09-24 01:03:11 -07:00
.travis.yml [SPARK-16967] move mesos to module 2016-08-26 12:25:22 -07:00
appveyor.yml [SPARK-17200][PROJECT INFRA][BUILD][SPARKR] Automate building and testing on Windows (currently SparkR only) 2016-09-08 08:26:59 -07:00
CONTRIBUTING.md [SPARK-17445][DOCS] Reference an ASF page as the main place to find third-party packages 2016-09-14 10:10:16 +01:00
LICENSE [SPARK-16781][PYSPARK] java launched by PySpark as gateway may not be the same java used in the spark environment 2016-08-24 20:04:09 +01:00
NOTICE [MINOR][BUILD] Add modernizr MIT license; specify "2014 and onwards" in license copyright 2016-06-04 21:41:27 +01:00
pom.xml [SPARK-17985][CORE] Bump commons-lang3 version to 3.5. 2016-10-19 10:06:43 +01:00
README.md [SPARK-17840][DOCS] Add some pointers for wiki/CONTRIBUTING.md in README.md and some warnings in PULL_REQUEST_TEMPLATE 2016-10-12 11:14:03 -07:00
scalastyle-config.xml [SPARK-16877][BUILD] Add rules for preventing to use Java annotations (Deprecated and Override) 2016-08-04 21:43:05 +01:00

Apache Spark

Spark is a fast and general cluster computing system for Big Data. It provides high-level APIs in Scala, Java, Python, and R, and an optimized engine that supports general computation graphs for data analysis. It also supports a rich set of higher-level tools including Spark SQL for SQL and DataFrames, MLlib for machine learning, GraphX for graph processing, and Spark Streaming for stream processing.

http://spark.apache.org/

Online Documentation

You can find the latest Spark documentation, including a programming guide, on the project web page and project wiki. This README file only contains basic setup instructions.

Building Spark

Spark is built using Apache Maven. To build Spark and its example programs, run:

build/mvn -DskipTests clean package

(You do not need to do this if you downloaded a pre-built package.)

You can build Spark using more than one thread by using the -T option with Maven, see "Parallel builds in Maven 3". More detailed documentation is available from the project site, at "Building Spark". For developing Spark using an IDE, see Eclipse and IntelliJ.

Interactive Scala Shell

The easiest way to start using Spark is through the Scala shell:

./bin/spark-shell

Try the following command, which should return 1000:

scala> sc.parallelize(1 to 1000).count()

Interactive Python Shell

Alternatively, if you prefer Python, you can use the Python shell:

./bin/pyspark

And run the following command, which should also return 1000:

>>> sc.parallelize(range(1000)).count()

Example Programs

Spark also comes with several sample programs in the examples directory. To run one of them, use ./bin/run-example <class> [params]. For example:

./bin/run-example SparkPi

will run the Pi example locally.

You can set the MASTER environment variable when running examples to submit examples to a cluster. This can be a mesos:// or spark:// URL, "yarn" to run on YARN, and "local" to run locally with one thread, or "local[N]" to run locally with N threads. You can also use an abbreviated class name if the class is in the examples package. For instance:

MASTER=spark://host:7077 ./bin/run-example SparkPi

Many of the example programs print usage help if no params are given.

Running Tests

Testing first requires building Spark. Once Spark is built, tests can be run using:

./dev/run-tests

Please see the guidance on how to run tests for a module, or individual tests.

A Note About Hadoop Versions

Spark uses the Hadoop core library to talk to HDFS and other Hadoop-supported storage systems. Because the protocols have changed in different versions of Hadoop, you must build Spark against the same version that your cluster runs.

Please refer to the build documentation at "Specifying the Hadoop Version" for detailed guidance on building for a particular distribution of Hadoop, including building for particular Hive and Hive Thriftserver distributions.

Configuration

Please refer to the Configuration Guide in the online documentation for an overview on how to configure Spark.

## Contributing

Please review the Contribution to Spark wiki for information on how to get started contributing to the project.