spark-instrumented-optimizer/docs
Peng, Meng 32286ba68a
[SPARK-17645][MLLIB][ML][FOLLOW-UP] document minor change
## What changes were proposed in this pull request?
Add FDR test case in ml/feature/ChiSqSelectorSuite.
Improve some comments in the code.
This is a follow-up pr for #15212.

## How was this patch tested?
ut

Author: Peng, Meng <peng.meng@intel.com>

Closes #16434 from mpjlu/fdr_fwe_update.
2017-01-10 13:09:58 +00:00
..
_data [SPARK-14817][ML][MLLIB][DOC] Made DataFrame-based API primary in MLlib guide 2016-07-15 13:38:23 -07:00
_includes [SPARK-14817][ML][MLLIB][DOC] Made DataFrame-based API primary in MLlib guide 2016-07-15 13:38:23 -07:00
_layouts [SPARK-18073][DOCS][WIP] Migrate wiki to spark.apache.org web site 2016-11-23 11:25:47 +00:00
_plugins [SPARK-18923][DOC][BUILD] Support skipping R/Python API docs 2016-12-21 08:59:38 +00:00
css [SPARK-12324][MLLIB][DOC] Fixes the sidebar in the ML documentation 2015-12-16 10:12:33 -08:00
img [SPARK-19074][SS][DOCS] Updated Structured Streaming Programming Guide for update mode and source/sink options 2017-01-06 11:29:01 -08:00
js [SPARK-16822][DOC] Support latex in scaladoc. 2016-08-02 09:14:08 -07:00
_config.yml [SPARK-18695] Bump master branch version to 2.2.0-SNAPSHOT 2016-12-02 21:09:37 -08:00
api.md [SPARK-8639] [DOCS] Fixed Minor Typos in Documentation 2015-06-27 08:47:00 +03:00
building-spark.md [DOC][BUILD][MINOR] add doc on new make-distribution switches 2016-12-27 22:37:37 -08:00
cluster-overview.md [SPARK-7997][CORE] Remove Akka from Spark Core and Streaming 2016-01-22 21:20:04 -08:00
configuration.md [SPARK-19106][DOCS] Styling for the configuration docs is broken 2017-01-07 19:15:51 +00:00
contributing-to-spark.md [SPARK-18073][DOCS][WIP] Migrate wiki to spark.apache.org web site 2016-11-23 11:25:47 +00:00
ec2-scripts.md [SPARK-14742][DOCS] Redirect spark-ec2 doc to new location 2016-04-20 10:46:02 -07:00
graphx-programming-guide.md [SPARK-18480][DOCS] Fix wrong links for ML guide docs 2016-11-17 13:40:16 +00:00
hadoop-provided.md [SPARK-6511] [docs] Fix example command in hadoop-provided docs. 2015-06-11 15:29:03 -07:00
hardware-provisioning.md [MINOR] fix typo in documents 2016-06-07 13:29:27 +01:00
index.md [MINOR][DOCS] Remove Apache Spark Wiki address 2016-12-10 16:40:10 +00:00
java-programming-guide.md [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
job-scheduling.md [SPARK-16505][YARN] Optionally propagate error during shuffle service startup. 2016-07-14 09:42:32 -05:00
ml-advanced.md [SPARK-18705][ML][DOC] Update user guide to reflect one pass solver for L1 and elastic-net 2016-12-07 19:41:32 -08:00
ml-ann.md [SPARK-14817][ML][MLLIB][DOC] Made DataFrame-based API primary in MLlib guide 2016-07-15 13:38:23 -07:00
ml-classification-regression.md [SPARK-18325][SPARKR][ML] SparkR ML wrappers example code and user guide 2016-12-08 06:19:38 -08:00
ml-clustering.md [SPARK-18325][SPARKR][ML] SparkR ML wrappers example code and user guide 2016-12-08 06:19:38 -08:00
ml-collaborative-filtering.md [SPARK-18325][SPARKR][ML] SparkR ML wrappers example code and user guide 2016-12-08 06:19:38 -08:00
ml-decision-tree.md [SPARK-14817][ML][MLLIB][DOC] Made DataFrame-based API primary in MLlib guide 2016-07-15 13:38:23 -07:00
ml-ensembles.md [SPARK-14817][ML][MLLIB][DOC] Made DataFrame-based API primary in MLlib guide 2016-07-15 13:38:23 -07:00
ml-features.md [SPARK-17645][MLLIB][ML][FOLLOW-UP] document minor change 2017-01-10 13:09:58 +00:00
ml-guide.md [SPARK-18812][MLLIB] explain "Spark ML" 2016-12-09 17:34:52 -08:00
ml-linear-methods.md [SPARK-14817][ML][MLLIB][DOC] Made DataFrame-based API primary in MLlib guide 2016-07-15 13:38:23 -07:00
ml-migration-guides.md [SPARK-18324][ML][DOC] Update ML programming and migration guide for 2.1 release 2016-12-02 16:28:01 -08:00
ml-pipeline.md [SPARK-18480][DOCS] Fix wrong links for ML guide docs 2016-11-17 13:40:16 +00:00
ml-survival-regression.md [SPARK-14817][ML][MLLIB][DOC] Made DataFrame-based API primary in MLlib guide 2016-07-15 13:38:23 -07:00
ml-tuning.md [SPARK-18446][ML][DOCS] Add links to API docs for ML algos 2016-11-16 10:53:23 +00:00
mllib-classification-regression.md [SPARK-14817][ML][MLLIB][DOC] Made DataFrame-based API primary in MLlib guide 2016-07-15 13:38:23 -07:00
mllib-clustering.md [SPARK-18427][DOC] Update docs of mllib.KMeans 2016-11-15 15:44:50 +01:00
mllib-collaborative-filtering.md [SPARK-14817][ML][MLLIB][DOC] Made DataFrame-based API primary in MLlib guide 2016-07-15 13:38:23 -07:00
mllib-data-types.md [MINOR][DOCS] Fix minor typos in python example code 2016-08-30 11:23:37 +01:00
mllib-decision-tree.md [SPARK-14817][ML][MLLIB][DOC] Made DataFrame-based API primary in MLlib guide 2016-07-15 13:38:23 -07:00
mllib-dimensionality-reduction.md [SPARK-14817][ML][MLLIB][DOC] Made DataFrame-based API primary in MLlib guide 2016-07-15 13:38:23 -07:00
mllib-ensembles.md [SPARK-14817][ML][MLLIB][DOC] Made DataFrame-based API primary in MLlib guide 2016-07-15 13:38:23 -07:00
mllib-evaluation-metrics.md [SPARK-14817][ML][MLLIB][DOC] Made DataFrame-based API primary in MLlib guide 2016-07-15 13:38:23 -07:00
mllib-feature-extraction.md [SPARK-17645][MLLIB][ML][FOLLOW-UP] document minor change 2017-01-10 13:09:58 +00:00
mllib-frequent-pattern-mining.md [SPARK-14817][ML][MLLIB][DOC] Made DataFrame-based API primary in MLlib guide 2016-07-15 13:38:23 -07:00
mllib-guide.md [SPARK-14817][ML][MLLIB][DOC] Made DataFrame-based API primary in MLlib guide 2016-07-15 13:38:23 -07:00
mllib-isotonic-regression.md [SPARK-18445][BUILD][DOCS] Fix the markdown for Note:/NOTE:/Note that/'''Note:''' across Scala/Java API documentation 2016-11-19 11:24:15 +00:00
mllib-linear-methods.md [SPARK-18480][DOCS] Fix wrong links for ML guide docs 2016-11-17 13:40:16 +00:00
mllib-migration-guides.md [SPARK-14817][ML][MLLIB][DOC] Made DataFrame-based API primary in MLlib guide 2016-07-15 13:38:23 -07:00
mllib-naive-bayes.md [SPARK-14817][ML][MLLIB][DOC] Made DataFrame-based API primary in MLlib guide 2016-07-15 13:38:23 -07:00
mllib-optimization.md [SPARK-14817][ML][MLLIB][DOC] Made DataFrame-based API primary in MLlib guide 2016-07-15 13:38:23 -07:00
mllib-pmml-model-export.md [SPARK-14817][ML][MLLIB][DOC] Made DataFrame-based API primary in MLlib guide 2016-07-15 13:38:23 -07:00
mllib-statistics.md [MINOR][DOCS] Remove consecutive duplicated words/typo in Spark Repo 2017-01-04 15:07:29 +00:00
monitoring.md [SPARK-19033][CORE] Add admin acls for history server 2017-01-06 10:07:54 -06:00
programming-guide.md [SPARK-18723][DOC] Expanded programming guide information on wholeTex… 2016-12-16 17:43:39 +00:00
python-programming-guide.md [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
quick-start.md [SPARK][EXAMPLE] Added missing semicolon in quick-start-guide example 2016-11-30 14:46:50 -05:00
README.md [SPARK-18923][DOC][BUILD] Support skipping R/Python API docs 2016-12-21 08:59:38 +00:00
running-on-mesos.md [SPARK-18232][MESOS] Support CNI 2016-11-14 23:46:54 -08:00
running-on-yarn.md [MINOR][DOC] Minor doc change for YARN credential providers 2017-01-02 14:41:57 +00:00
scala-programming-guide.md [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
security.md Update docs to include SASL support for RPC 2016-08-08 16:07:51 -07:00
spark-standalone.md [SPARK-17711] Compress rolled executor log 2016-10-18 13:23:31 -07:00
sparkr.md [SPARK-18849][ML][SPARKR][DOC] vignettes final check reorg 2016-12-17 14:37:34 -08:00
sql-programming-guide.md [SPARK-18941][SQL][DOC] Add a new behavior document on CREATE/DROP TABLE with LOCATION 2017-01-07 18:55:01 -08:00
storage-openstack-swift.md [SPARK-938][doc] Add OpenStack Swift support 2014-09-07 20:56:04 -07:00
streaming-custom-receivers.md [SPARK-12370][DOCUMENTATION] Documentation should link to examples … 2016-08-13 11:25:03 +01:00
streaming-flume-integration.md [SPARK-17985][CORE] Bump commons-lang3 version to 3.5. 2016-10-19 10:06:43 +01:00
streaming-kafka-0-8-integration.md [SPARK-17331][CORE][MLLIB] Avoid allocating 0-length arrays 2016-09-01 12:13:07 -07:00
streaming-kafka-0-10-integration.md [SPARK-18198][DOC][STREAMING] Highlight code snippets 2016-11-02 09:10:34 +00:00
streaming-kafka-integration.md [SPARK-16312][STREAMING][KAFKA][DOC] Doc for Kafka 0.10 integration 2016-08-05 10:13:32 +01:00
streaming-kinesis-integration.md [MINOR][DOCS] Fix th doc. of spark-streaming with kinesis 2016-09-29 08:26:03 -04:00
streaming-programming-guide.md [SPARK-19003][DOCS] Add Java example in Spark Streaming Guide, section Design Patterns for using foreachRDD 2016-12-29 22:03:34 +00:00
structured-streaming-kafka-integration.md [MINOR][DOCS] Remove consecutive duplicated words/typo in Spark Repo 2017-01-04 15:07:29 +00:00
structured-streaming-programming-guide.md [SPARK-19074][SS][DOCS] Updated Structured Streaming Programming Guide for update mode and source/sink options 2017-01-06 11:29:01 -08:00
submitting-applications.md [SPARK-17898][DOCS] repositories needs username and password 2016-10-22 09:39:07 +01:00
tuning.md [SPARK-18432][DOC] Changed HDFS default block size from 64MB to 128MB 2016-11-14 21:07:59 +09:00

Welcome to the Spark documentation!

This readme will walk you through navigating and building the Spark documentation, which is included here with the Spark source code. You can also find documentation specific to release versions of Spark at http://spark.apache.org/documentation.html.

Read on to learn more about viewing documentation in plain text (i.e., markdown) or building the documentation yourself. Why build it yourself? So that you have the docs that corresponds to whichever version of Spark you currently have checked out of revision control.

Prerequisites

The Spark documentation build uses a number of tools to build HTML docs and API docs in Scala, Python and R.

You need to have Ruby and Python installed. Also install the following libraries:

    $ sudo gem install jekyll jekyll-redirect-from pygments.rb
    $ sudo pip install Pygments
    # Following is needed only for generating API docs
    $ sudo pip install sphinx pypandoc
    $ sudo Rscript -e 'install.packages(c("knitr", "devtools", "roxygen2", "testthat", "rmarkdown"), repos="http://cran.stat.ucla.edu/")'

(Note: If you are on a system with both Ruby 1.9 and Ruby 2.0 you may need to replace gem with gem2.0)

Generating the Documentation HTML

We include the Spark documentation as part of the source (as opposed to using a hosted wiki, such as the github wiki, as the definitive documentation) to enable the documentation to evolve along with the source code and be captured by revision control (currently git). This way the code automatically includes the version of the documentation that is relevant regardless of which version or release you have checked out or downloaded.

In this directory you will find textfiles formatted using Markdown, with an ".md" suffix. You can read those text files directly if you want. Start with index.md.

Execute jekyll build from the docs/ directory to compile the site. Compiling the site with Jekyll will create a directory called _site containing index.html as well as the rest of the compiled files.

$ cd docs
$ jekyll build

You can modify the default Jekyll build as follows:

    # Skip generating API docs (which takes a while)
    $ SKIP_API=1 jekyll build
    
    # Serve content locally on port 4000
    $ jekyll serve --watch
    
    # Build the site with extra features used on the live page
    $ PRODUCTION=1 jekyll build

API Docs (Scaladoc, Sphinx, roxygen2)

You can build just the Spark scaladoc by running build/sbt unidoc from the SPARK_PROJECT_ROOT directory.

Similarly, you can build just the PySpark docs by running make html from the SPARK_PROJECT_ROOT/python/docs directory. Documentation is only generated for classes that are listed as public in __init__.py. The SparkR docs can be built by running SPARK_PROJECT_ROOT/R/create-docs.sh.

When you run jekyll in the docs directory, it will also copy over the scaladoc for the various Spark subprojects into the docs directory (and then also into the _site directory). We use a jekyll plugin to run build/sbt unidoc before building the site so if you haven't run it (recently) it may take some time as it generates all of the scaladoc. The jekyll plugin also generates the PySpark docs using Sphinx.

NOTE: To skip the step of building and copying over the Scala, Python, R API docs, run SKIP_API=1 jekyll. In addition, SKIP_SCALADOC=1, SKIP_PYTHONDOC=1, and SKIP_RDOC=1 can be used to skip a single step of the corresponding language.