Apache Spark - A unified analytics engine for large-scale data processing
Go to file
Marcelo Vanzin 38112905bc [SPARK-5479] [YARN] Handle --py-files correctly in YARN.
The bug description is a little misleading: the actual issue is that
.py files are not handled correctly when distributed by YARN. They're
added to "spark.submit.pyFiles", which, when processed by context.py,
explicitly whitelists certain extensions (see PACKAGE_EXTENSIONS),
and that does not include .py files.

On top of that, archives were not handled at all! They made it to the
driver's python path, but never made it to executors, since the mechanism
used to propagate their location (spark.submit.pyFiles) only works on
the driver side.

So, instead, ignore "spark.submit.pyFiles" and just build PYTHONPATH
correctly for both driver and executors. Individual .py files are
placed in a subdirectory of the container's local dir in the cluster,
which is then added to the python path. Archives are added directly.

The change, as a side effect, ends up solving the symptom described
in the bug. The issue was not that the files were not being distributed,
but that they were never made visible to the python application
running under Spark.

Also included is a proper unit test for running python on YARN, which
broke in several different ways with the previous code.

A short walk around of the changes:
- SparkSubmit does not try to be smart about how YARN handles python
  files anymore. It just passes down the configs to the YARN client
  code.
- The YARN client distributes python files and archives differently,
  placing the files in a subdirectory.
- The YARN client now sets PYTHONPATH for the processes it launches;
  to properly handle different locations, it uses YARN's support for
  embedding env variables, so to avoid YARN expanding those at the
  wrong time, SparkConf is now propagated to the AM using a conf file
  instead of command line options.
- Because the Client initialization code is a maze of implicit
  dependencies, some code needed to be moved around to make sure
  all needed state was available when the code ran.
- The pyspark tests in YarnClusterSuite now actually distribute and try
  to use both a python file and an archive containing a different python
  module. Also added a yarn-client tests for completeness.
- I cleaned up some of the code around distributing files to YARN, to
  avoid adding more copied & pasted code to handle the new files being
  distributed.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #6360 from vanzin/SPARK-5479 and squashes the following commits:

bcaf7e6 [Marcelo Vanzin] Feedback.
c47501f [Marcelo Vanzin] Fix yarn-client mode.
46b1d0c [Marcelo Vanzin] Merge branch 'master' into SPARK-5479
c743778 [Marcelo Vanzin] Only pyspark cares about python archives.
c8e5a82 [Marcelo Vanzin] Actually run pyspark in client mode.
705571d [Marcelo Vanzin] Move some code to the YARN module.
1dd4d0c [Marcelo Vanzin] Review feedback.
71ee736 [Marcelo Vanzin] Merge branch 'master' into SPARK-5479
220358b [Marcelo Vanzin] Scalastyle.
cdbb990 [Marcelo Vanzin] Merge branch 'master' into SPARK-5479
7fe3cd4 [Marcelo Vanzin] No need to distribute primary file to executors.
09045f1 [Marcelo Vanzin] Style.
943cbf4 [Marcelo Vanzin] [SPARK-5479] [yarn] Handle --py-files correctly in YARN.
2015-06-10 13:17:29 -07:00
assembly [SPARK-7801] [BUILD] Updating versions to SPARK 1.5.0 2015-06-03 10:11:27 -07:00
bagel [SPARK-7801] [BUILD] Updating versions to SPARK 1.5.0 2015-06-03 10:11:27 -07:00
bin [SPARK-7733] [CORE] [BUILD] Update build, code to use Java 7 for 1.5.0+ 2015-06-07 20:18:13 +01:00
build SPARK-5856: In Maven build script, launch Zinc with more memory 2015-02-17 10:10:01 -08:00
conf [DOC][Minor]Specify the common sources available for collecting 2015-06-05 07:45:25 +02:00
core [SPARK-5479] [YARN] Handle --py-files correctly in YARN. 2015-06-10 13:17:29 -07:00
data/mllib [SPARK-7574] [ML] [DOC] User guide for OneVsRest 2015-05-22 13:18:08 -07:00
dev [MINOR] [BUILD] Change link to jenkins builds on github. 2015-06-05 10:32:33 +02:00
docker [SPARK-2691] [MESOS] Support for Mesos DockerInfo 2015-05-01 18:41:22 -07:00
docs [SQL] [MINOR] Fixes a minor Java example error in SQL programming guide 2015-06-10 11:48:14 -07:00
ec2 [SPARK-3674] [EC2] Clear SPARK_WORKER_INSTANCES when using YARN 2015-06-03 15:14:38 -07:00
examples [SPARK-7743] [SQL] Parquet 1.7 2015-06-04 11:32:03 -07:00
external [SPARK-2808] [STREAMING] [KAFKA] cleanup tests from 2015-06-07 21:42:45 +01:00
extras [BUILD] Fix Maven build for Kinesis 2015-06-03 20:45:31 -07:00
graphx [SPARK-7801] [BUILD] Updating versions to SPARK 1.5.0 2015-06-03 10:11:27 -07:00
launcher [SPARK-6324] [CORE] Centralize handling of script usage messages. 2015-06-05 14:32:00 +02:00
mllib [SPARK-8140] [MLLIB] Remove construct to get weights in StreamingLinearAlgorithm 2015-06-09 15:00:35 +01:00
network [SPARK-7801] [BUILD] Updating versions to SPARK 1.5.0 2015-06-03 10:11:27 -07:00
project [SPARK-8126] [BUILD] Use custom temp directory during build. 2015-06-08 15:37:28 +01:00
python [SPARK-7886] Add built-in expressions to FunctionRegistry. 2015-06-09 16:24:38 +08:00
R [SPARK-6820] [SPARKR] Convert NAs to null type in SparkR DataFrames 2015-06-08 21:40:12 -07:00
repl [SPARK-7801] [BUILD] Updating versions to SPARK 1.5.0 2015-06-03 10:11:27 -07:00
sbin [SPARK-5412] [DEPLOY] Cannot bind Master to a specific hostname as per the documentation 2015-05-15 11:30:19 -07:00
sbt Adde LICENSE Header to build/mvn, build/sbt and sbt/sbt 2014-12-29 10:48:53 -08:00
sql [SPARK-8215] [SPARK-8212] [SQL] add leaf math expression for e and pi 2015-06-10 09:45:45 -07:00
streaming [SPARK-8112] [STREAMING] Fix the negative event count issue 2015-06-05 12:46:02 -07:00
tools [SPARK-7801] [BUILD] Updating versions to SPARK 1.5.0 2015-06-03 10:11:27 -07:00
unsafe [SPARK-7733] [CORE] [BUILD] Update build, code to use Java 7 for 1.5.0+ 2015-06-07 20:18:13 +01:00
yarn [SPARK-5479] [YARN] Handle --py-files correctly in YARN. 2015-06-10 13:17:29 -07:00
.gitattributes [SPARK-3870] EOL character enforcement 2014-10-31 12:39:52 -07:00
.gitignore [MINOR] Ignore python/lib/pyspark.zip 2015-05-08 14:06:02 -07:00
.rat-excludes [SPARK-7161] [HISTORY SERVER] Provide REST api to download event logs fro... 2015-06-03 13:43:13 -05:00
CONTRIBUTING.md [SPARK-6889] [DOCS] CONTRIBUTING.md updates to accompany contribution doc updates 2015-04-21 22:34:31 -07:00
LICENSE [MINOR] Add license for dagre-d3 and graphlib-dot 2015-05-31 11:18:12 -07:00
make-distribution.sh [SPARK-7733] [CORE] [BUILD] Update build, code to use Java 7 for 1.5.0+ 2015-06-07 20:18:13 +01:00
NOTICE SPARK-1827. LICENSE and NOTICE files need a refresh to contain transitive dependency info 2014-05-14 09:38:33 -07:00
pom.xml [SPARK-8101] [CORE] Upgrade netty to avoid memory leak accord to netty #3837 issues 2015-06-09 08:00:04 +01:00
README.md Update README to include DataFrames and zinc. 2015-05-31 23:55:45 -07:00
scalastyle-config.xml [SPARK-7986] Split scalastyle config into 3 sections. 2015-05-31 18:04:57 -07:00
tox.ini [SPARK-7427] [PYSPARK] Make sharedParams match in Scala, Python 2015-05-10 19:18:32 -07:00

Apache Spark

Spark is a fast and general cluster computing system for Big Data. It provides high-level APIs in Scala, Java, and Python, and an optimized engine that supports general computation graphs for data analysis. It also supports a rich set of higher-level tools including Spark SQL for SQL and DataFrames, MLlib for machine learning, GraphX for graph processing, and Spark Streaming for stream processing.

http://spark.apache.org/

Online Documentation

You can find the latest Spark documentation, including a programming guide, on the project web page and project wiki. This README file only contains basic setup instructions.

Building Spark

Spark is built using Apache Maven. To build Spark and its example programs, run:

build/mvn -DskipTests clean package

(You do not need to do this if you downloaded a pre-built package.) More detailed documentation is available from the project site, at "Building Spark".

Interactive Scala Shell

The easiest way to start using Spark is through the Scala shell:

./bin/spark-shell

Try the following command, which should return 1000:

scala> sc.parallelize(1 to 1000).count()

Interactive Python Shell

Alternatively, if you prefer Python, you can use the Python shell:

./bin/pyspark

And run the following command, which should also return 1000:

>>> sc.parallelize(range(1000)).count()

Example Programs

Spark also comes with several sample programs in the examples directory. To run one of them, use ./bin/run-example <class> [params]. For example:

./bin/run-example SparkPi

will run the Pi example locally.

You can set the MASTER environment variable when running examples to submit examples to a cluster. This can be a mesos:// or spark:// URL, "yarn-cluster" or "yarn-client" to run on YARN, and "local" to run locally with one thread, or "local[N]" to run locally with N threads. You can also use an abbreviated class name if the class is in the examples package. For instance:

MASTER=spark://host:7077 ./bin/run-example SparkPi

Many of the example programs print usage help if no params are given.

Running Tests

Testing first requires building Spark. Once Spark is built, tests can be run using:

./dev/run-tests

Please see the guidance on how to run tests for a module, or individual tests.

A Note About Hadoop Versions

Spark uses the Hadoop core library to talk to HDFS and other Hadoop-supported storage systems. Because the protocols have changed in different versions of Hadoop, you must build Spark against the same version that your cluster runs.

Please refer to the build documentation at "Specifying the Hadoop Version" for detailed guidance on building for a particular distribution of Hadoop, including building for particular Hive and Hive Thriftserver distributions. See also "Third Party Hadoop Distributions" for guidance on building a Spark application that works with a particular distribution.

Configuration

Please refer to the Configuration guide in the online documentation for an overview on how to configure Spark.