spark-instrumented-optimizer/core/pom.xml
Josh Rosen 83b7a1c650 [SPARK-4019] [SPARK-3740] Fix MapStatus compression bug that could lead to empty results or Snappy errors
This commit fixes a bug in MapStatus that could cause jobs to wrongly return
empty results if those jobs contained stages with more than 2000 partitions
where most of those partitions were empty.

For jobs with > 2000 partitions, MapStatus uses HighlyCompressedMapStatus,
which only stores the average size of blocks.  If the average block size is
zero, then this will cause all blocks to be reported as empty, causing
BlockFetcherIterator to mistakenly skip them.

For example, this would return an empty result:

    sc.makeRDD(0 until 10, 1000).repartition(2001).collect()

This can also lead to deserialization errors (e.g. Snappy decoding errors)
for jobs with > 2000 partitions where the average block size is non-zero but
there is at least one empty block.  In this case, the BlockFetcher attempts to
fetch empty blocks and fails when trying to deserialize them.

The root problem here is that MapStatus has a (previously undocumented)
correctness property that was violated by HighlyCompressedMapStatus:

    If a block is non-empty, then getSizeForBlock must be non-zero.

I fixed this by modifying HighlyCompressedMapStatus to store the average size
of _non-empty_ blocks and to use a compressed bitmap to track which blocks are
empty.

I also removed a test which was broken as originally written: it attempted
to check that HighlyCompressedMapStatus's size estimation error was < 10%,
but this was broken because HighlyCompressedMapStatus is only used for map
statuses with > 2000 partitions, but the test only created 50.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #2866 from JoshRosen/spark-4019 and squashes the following commits:

fc8b490 [Josh Rosen] Roll back hashset change, which didn't improve performance.
5faa0a4 [Josh Rosen] Incorporate review feedback
c8b8cae [Josh Rosen] Two performance fixes:
3b892dd [Josh Rosen] Address Reynold's review comments
ba2e71c [Josh Rosen] Add missing newline
609407d [Josh Rosen] Use Roaring Bitmap to track non-empty blocks.
c23897a [Josh Rosen] Use sets when comparing collect() results
91276a3 [Josh Rosen] [SPARK-4019] Fix MapStatus compression bug that could lead to empty results.
2014-10-23 16:39:32 -07:00

419 lines
14 KiB
XML

<?xml version="1.0" encoding="UTF-8"?>
<!--
~ Licensed to the Apache Software Foundation (ASF) under one or more
~ contributor license agreements. See the NOTICE file distributed with
~ this work for additional information regarding copyright ownership.
~ The ASF licenses this file to You under the Apache License, Version 2.0
~ (the "License"); you may not use this file except in compliance with
~ the License. You may obtain a copy of the License at
~
~ http://www.apache.org/licenses/LICENSE-2.0
~
~ Unless required by applicable law or agreed to in writing, software
~ distributed under the License is distributed on an "AS IS" BASIS,
~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
~ See the License for the specific language governing permissions and
~ limitations under the License.
-->
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>org.apache.spark</groupId>
<artifactId>spark-parent</artifactId>
<version>1.2.0-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>
<groupId>org.apache.spark</groupId>
<artifactId>spark-core_2.10</artifactId>
<properties>
<sbt.project.name>core</sbt.project.name>
</properties>
<packaging>jar</packaging>
<name>Spark Project Core</name>
<url>http://spark.apache.org/</url>
<dependencies>
<dependency>
<groupId>org.apache.hadoop</groupId>
<artifactId>hadoop-client</artifactId>
<exclusions>
<exclusion>
<groupId>javax.servlet</groupId>
<artifactId>servlet-api</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>net.java.dev.jets3t</groupId>
<artifactId>jets3t</artifactId>
</dependency>
<dependency>
<groupId>org.apache.curator</groupId>
<artifactId>curator-recipes</artifactId>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-plus</artifactId>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-security</artifactId>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-util</artifactId>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-server</artifactId>
</dependency>
<!--
Promote Guava to "compile" so that maven-shade-plugin picks it up (for packaging the Optional
class exposed in the Java API). The plugin will then remove this dependency from the published
pom, so that Guava does not pollute the client's compilation classpath.
-->
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-math3</artifactId>
<version>3.3</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.google.code.findbugs</groupId>
<artifactId>jsr305</artifactId>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>jul-to-slf4j</artifactId>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>jcl-over-slf4j</artifactId>
</dependency>
<dependency>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId>
</dependency>
<dependency>
<groupId>com.ning</groupId>
<artifactId>compress-lzf</artifactId>
</dependency>
<dependency>
<groupId>org.xerial.snappy</groupId>
<artifactId>snappy-java</artifactId>
</dependency>
<dependency>
<groupId>net.jpountz.lz4</groupId>
<artifactId>lz4</artifactId>
</dependency>
<dependency>
<groupId>com.twitter</groupId>
<artifactId>chill_${scala.binary.version}</artifactId>
</dependency>
<dependency>
<groupId>com.twitter</groupId>
<artifactId>chill-java</artifactId>
</dependency>
<dependency>
<groupId>org.roaringbitmap</groupId>
<artifactId>RoaringBitmap</artifactId>
</dependency>
<dependency>
<groupId>commons-net</groupId>
<artifactId>commons-net</artifactId>
</dependency>
<dependency>
<groupId>${akka.group}</groupId>
<artifactId>akka-remote_${scala.binary.version}</artifactId>
</dependency>
<dependency>
<groupId>${akka.group}</groupId>
<artifactId>akka-slf4j_${scala.binary.version}</artifactId>
</dependency>
<dependency>
<groupId>${akka.group}</groupId>
<artifactId>akka-testkit_${scala.binary.version}</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.scala-lang</groupId>
<artifactId>scala-library</artifactId>
</dependency>
<dependency>
<groupId>org.json4s</groupId>
<artifactId>json4s-jackson_${scala.binary.version}</artifactId>
<version>3.2.10</version>
</dependency>
<dependency>
<groupId>colt</groupId>
<artifactId>colt</artifactId>
</dependency>
<dependency>
<groupId>org.apache.mesos</groupId>
<artifactId>mesos</artifactId>
<classifier>${mesos.classifier}</classifier>
</dependency>
<dependency>
<groupId>io.netty</groupId>
<artifactId>netty-all</artifactId>
</dependency>
<dependency>
<groupId>com.clearspring.analytics</groupId>
<artifactId>stream</artifactId>
</dependency>
<dependency>
<groupId>com.codahale.metrics</groupId>
<artifactId>metrics-core</artifactId>
</dependency>
<dependency>
<groupId>com.codahale.metrics</groupId>
<artifactId>metrics-jvm</artifactId>
</dependency>
<dependency>
<groupId>com.codahale.metrics</groupId>
<artifactId>metrics-json</artifactId>
</dependency>
<dependency>
<groupId>com.codahale.metrics</groupId>
<artifactId>metrics-graphite</artifactId>
</dependency>
<dependency>
<groupId>org.apache.derby</groupId>
<artifactId>derby</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.tachyonproject</groupId>
<artifactId>tachyon-client</artifactId>
<version>0.5.0</version>
<exclusions>
<exclusion>
<groupId>org.apache.hadoop</groupId>
<artifactId>hadoop-client</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.curator</groupId>
<artifactId>curator-recipes</artifactId>
</exclusion>
<exclusion>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-jsp</artifactId>
</exclusion>
<exclusion>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-webapp</artifactId>
</exclusion>
<exclusion>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-server</artifactId>
</exclusion>
<exclusion>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlet</artifactId>
</exclusion>
<exclusion>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
</exclusion>
<exclusion>
<groupId>org.powermock</groupId>
<artifactId>powermock-module-junit4</artifactId>
</exclusion>
<exclusion>
<groupId>org.powermock</groupId>
<artifactId>powermock-api-mockito</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.curator</groupId>
<artifactId>curator-test</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.scalatest</groupId>
<artifactId>scalatest_${scala.binary.version}</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-all</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.scalacheck</groupId>
<artifactId>scalacheck_${scala.binary.version}</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.easymock</groupId>
<artifactId>easymockclassextension</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>asm</groupId>
<artifactId>asm</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.novocode</groupId>
<artifactId>junit-interface</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.spark-project</groupId>
<artifactId>pyrolite</artifactId>
<version>2.0.1</version>
</dependency>
<dependency>
<groupId>net.sf.py4j</groupId>
<artifactId>py4j</artifactId>
<version>0.8.2.1</version>
</dependency>
</dependencies>
<build>
<outputDirectory>target/scala-${scala.binary.version}/classes</outputDirectory>
<testOutputDirectory>target/scala-${scala.binary.version}/test-classes</testOutputDirectory>
<plugins>
<plugin>
<groupId>org.scalatest</groupId>
<artifactId>scalatest-maven-plugin</artifactId>
<configuration>
<environmentVariables>
<SPARK_HOME>${basedir}/..</SPARK_HOME>
<SPARK_TESTING>1</SPARK_TESTING>
<SPARK_CLASSPATH>${spark.classpath}</SPARK_CLASSPATH>
</environmentVariables>
</configuration>
</plugin>
<!-- Unzip py4j so we can include its files in the jar -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-antrun-plugin</artifactId>
<executions>
<execution>
<phase>generate-resources</phase>
<goals>
<goal>run</goal>
</goals>
</execution>
</executions>
<configuration>
<tasks>
<unzip src="../python/lib/py4j-0.8.2.1-src.zip" dest="../python/build" />
</tasks>
</configuration>
</plugin>
<plugin>
<artifactId>maven-clean-plugin</artifactId>
<configuration>
<filesets>
<fileset>
<directory>${basedir}/../python/build</directory>
</fileset>
</filesets>
<verbose>true</verbose>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>shade</goal>
</goals>
<configuration>
<shadedArtifactAttached>false</shadedArtifactAttached>
<artifactSet>
<includes>
<include>com.google.guava:guava</include>
</includes>
</artifactSet>
<filters>
<!-- See comment in the guava dependency declaration above. -->
<filter>
<artifact>com.google.guava:guava</artifact>
<includes>
<include>com/google/common/base/Absent*</include>
<include>com/google/common/base/Optional*</include>
<include>com/google/common/base/Present*</include>
</includes>
</filter>
</filters>
</configuration>
</execution>
</executions>
</plugin>
<!--
Copy guava to the build directory. This is needed to make the SPARK_PREPEND_CLASSES
option work in compute-classpath.sh, since it would put the non-shaded Spark classes in
the runtime classpath.
-->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<executions>
<execution>
<id>copy-dependencies</id>
<phase>package</phase>
<goals>
<goal>copy-dependencies</goal>
</goals>
<configuration>
<outputDirectory>${project.build.directory}</outputDirectory>
<overWriteReleases>false</overWriteReleases>
<overWriteSnapshots>false</overWriteSnapshots>
<overWriteIfNewer>true</overWriteIfNewer>
<useSubDirectoryPerType>true</useSubDirectoryPerType>
<includeArtifactIds>guava</includeArtifactIds>
<silent>true</silent>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
<resources>
<resource>
<directory>src/main/resources</directory>
</resource>
<resource>
<directory>../python</directory>
<includes>
<include>pyspark/*.py</include>
</includes>
</resource>
<resource>
<directory>../python/build</directory>
<includes>
<include>py4j/*.py</include>
</includes>
</resource>
</resources>
</build>
</project>