spark-instrumented-optimizer/docs
Zhan Zhang 3b764699ff [SPARK-4461][YARN] pass extra java options to yarn application master
Currently, there is no way to pass yarn am specific java options. It cause some potential issues when reading classpath from hadoop configuration file. Hadoop configuration actually replace variables in its property with the system property passed in java options. How to specify the value depends on different hadoop distribution.

The new options are SPARK_YARN_JAVA_OPTS or spark.yarn.extraJavaOptions. I make it as spark global level, because typically we don't want user to specify this in their command line each time submitting spark job after it is setup in spark-defaults.conf.

In addition, with this new extra options enabled to be passed to AM, it provides more flexibility.

For example int the following valid mapred-site.xml file, we have the class path which specify values using system property. Hadoop can correctly handle it because it has java options passed in.

This is the example, currently spark will break due to hadoop.version is not passed in.
  <property>
    <name>mapreduce.application.classpath</name>
    <value>/etc/hadoop/${hadoop.version}/mapreduce/*</value>
  </property>

In the meantime, we cannot relies on  mapreduce.admin.map.child.java.opts in mapred-site.xml, because it has its own extra java options specified, which does not apply to Spark.

Author: Zhan Zhang <zhazhan@gmail.com>

Closes #3409 from zhzhan/Spark-4461 and squashes the following commits:

daec3d0 [Zhan Zhang] solve review comments
08f44a7 [Zhan Zhang] add warning in driver mode if spark.yarn.am.extraJavaOptions is configured
5a505d3 [Zhan Zhang] solve review comments
4ed43ad [Zhan Zhang] solve review comments
ad777ed [Zhan Zhang] Merge branch 'master' into Spark-4461
3e9e574 [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
e3f9abe [Zhan Zhang] solve review comments
8963552 [Zhan Zhang] rebase
f8f6700 [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
dea1692 [Zhan Zhang] change the option key name to client mode specific
90d5dff [Zhan Zhang] rebase
8ac9254 [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
092a25f [Zhan Zhang] solve review comments
bc5a9ae [Zhan Zhang] solve review comments
782b014 [Zhan Zhang] add new configuration to docs/running-on-yarn.md and remove it from spark-defaults.conf.template
6faaa97 [Zhan Zhang] solve review comments
369863f [Zhan Zhang] clean up unnecessary var
733de9c [Zhan Zhang] Merge branch 'master' into Spark-4461
a68e7f0 [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
864505a [Zhan Zhang] Add extra java options to be passed to Yarn application master
15830fc [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
685d911 [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
03ebad3 [Zhan Zhang] Merge branch 'master' of https://github.com/zhzhan/spark
46d9e3d [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
ebb213a [Zhan Zhang] revert
b983ef3 [Zhan Zhang] test
c4efb9b [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
779d67b [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
4daae6d [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
12e1be5 [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
ce0ca7b [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
93f3081 [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
3764505 [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
a9d372b [Zhan Zhang] Merge branch 'master' of https://github.com/zhzhan/spark
a00f60f [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
497b0f4 [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
4a2e36d [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
a72c0d4 [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
301eb4a [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
cedcc6f [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
adf4924 [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
d10bf00 [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
7e0cc36 [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
68deb11 [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
3ee3b2b [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
2b0d513 [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
1ccd7cc [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
af9feb9 [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
e4c1982 [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
921e914 [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
789ea21 [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
cb53a2c [Zhan Zhang] Merge branch 'master' of https://github.com/apache/spark
f6a8a40 [Zhan Zhang] revert
ba14f28 [Zhan Zhang] test
2014-12-18 10:01:46 -06:00
..
_layouts [SPARK-4806] Streaming doc update for 1.2 2014-12-11 06:21:23 -08:00
_plugins [SPARK-3412] [PySpark] Replace Epydoc with Sphinx to generate Python API docs 2014-10-07 18:09:27 -07:00
css [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
img [SPARK-4575] [mllib] [docs] spark.ml pipelines doc + bug fixes 2014-12-04 17:00:06 +08:00
js [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
_config.yml Bumping version to 1.3.0-SNAPSHOT. 2014-11-18 21:24:18 -08:00
api.md [SPARK-1439, SPARK-1440] Generate unified Scaladoc across projects and Javadocs 2014-04-21 21:57:40 -07:00
bagel-programming-guide.md SPARK-2363. Clean MLlib's sample data files 2014-07-13 19:27:43 -07:00
building-spark.md [SPARK-4668] Fix some documentation typos. 2014-12-15 14:52:17 -08:00
cluster-overview.md [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
configuration.md [SPARK-4668] Fix some documentation typos. 2014-12-15 14:52:17 -08:00
contributing-to-spark.md Work in progress: 2013-09-08 00:29:11 -07:00
ec2-scripts.md [SPARK-3405] add subnet-id and vpc-id options to spark_ec2.py 2014-12-16 12:13:21 -08:00
graphx-programming-guide.md [Doc][GraphX] Remove Motivation section and did some minor update. 2014-11-21 00:29:02 -08:00
hadoop-third-party-distributions.md SPARK-3069 [DOCS] Build instructions in README are outdated 2014-09-16 09:18:03 -07:00
hardware-provisioning.md Change port from 3030 to 4040 2013-09-11 10:01:38 -07:00
index.md SPARK-971 [DOCS] Link to Confluence wiki from project website / documentation 2014-11-09 17:40:48 -08:00
java-programming-guide.md [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
job-scheduling.md SPARK-1183. Don't use "worker" to mean executor 2014-03-13 12:11:33 -07:00
ml-guide.md [FIX][DOC] Fix broken links in ml-guide.md 2014-12-04 20:16:35 +08:00
mllib-classification-regression.md SPARK-2830 [MLlib]: re-organize mllib documentation 2014-08-12 17:15:21 -07:00
mllib-clustering.md Streaming KMeans [MLLIB][SPARK-3254] 2014-10-31 22:30:12 -07:00
mllib-collaborative-filtering.md SPARK-1307 [DOCS] Don't use term 'standalone' to refer to a Spark Application 2014-10-14 21:37:51 -07:00
mllib-data-types.md [SPARK-2830][MLLIB] doc update for 1.1 2014-08-27 01:19:48 -07:00
mllib-decision-tree.md [SPARK-4580] [SPARK-4610] [mllib] [docs] Documentation for tree ensembles + DecisionTree API fix 2014-12-04 09:57:50 +08:00
mllib-dimensionality-reduction.md SPARK-1307 [DOCS] Don't use term 'standalone' to refer to a Spark Application 2014-10-14 21:37:51 -07:00
mllib-ensembles.md [SPARK-4580] [SPARK-4610] [mllib] [docs] Documentation for tree ensembles + DecisionTree API fix 2014-12-04 09:57:50 +08:00
mllib-feature-extraction.md [SPARK-3838][examples][mllib][python] Word2Vec example in python 2014-10-31 18:33:19 -07:00
mllib-guide.md [SPARK-4575] [mllib] [docs] spark.ml pipelines doc + bug fixes 2014-12-04 17:00:06 +08:00
mllib-linear-methods.md [SPARK-4711] [mllib] [docs] Programming guide advice on choosing optimizer 2014-12-04 08:58:03 +08:00
mllib-naive-bayes.md fixed MLlib Naive-Bayes java example bug 2014-11-04 09:53:43 -08:00
mllib-optimization.md [SPARK-4711] [mllib] [docs] Programming guide advice on choosing optimizer 2014-12-04 08:58:03 +08:00
mllib-statistics.md [SPARK-3964] [MLlib] [PySpark] add Hypothesis test Python API 2014-11-04 21:35:52 -08:00
monitoring.md [SPARK-4546] Improve HistoryServer first time user experience 2014-11-25 15:48:02 -08:00
programming-guide.md Documentation: add description for repartitionAndSortWithinPartitions 2014-12-01 08:45:34 -08:00
python-programming-guide.md [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
quick-start.md SPARK-4170 [CORE] Closure problems when running Scala app that "extends App" 2014-11-27 09:03:17 -08:00
README.md add Sphinx as a dependency of building docs 2014-11-20 19:13:16 -08:00
running-on-mesos.md [SPARK-3240] Adding known issue for MESOS-1688 2014-08-26 18:30:45 -07:00
running-on-yarn.md [SPARK-4461][YARN] pass extra java options to yarn application master 2014-12-18 10:01:46 -06:00
scala-programming-guide.md [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
security.md [SPARK-2938] Support SASL authentication in NettyBlockTransferService 2014-11-04 16:15:38 -08:00
spark-standalone.md [SPARK-4771][Docs] Document standalone cluster supervise mode 2014-12-10 12:41:36 -08:00
sql-programming-guide.md [DOCS][SQL] Add a Note on jsonFile having separate JSON objects per line 2014-12-16 13:58:01 -08:00
storage-openstack-swift.md [SPARK-938][doc] Add OpenStack Swift support 2014-09-07 20:56:04 -07:00
streaming-custom-receivers.md [SPARK-4806] Streaming doc update for 1.2 2014-12-11 06:21:23 -08:00
streaming-flume-integration.md [SPARK-4806] Streaming doc update for 1.2 2014-12-11 06:21:23 -08:00
streaming-kafka-integration.md [SPARK-4806] Streaming doc update for 1.2 2014-12-11 06:21:23 -08:00
streaming-kinesis-integration.md SPARK-3069 [DOCS] Build instructions in README are outdated 2014-09-16 09:18:03 -07:00
streaming-programming-guide.md [SPARK-4806] Streaming doc update for 1.2 2014-12-11 06:21:23 -08:00
submitting-applications.md [SPARK-4806] Streaming doc update for 1.2 2014-12-11 06:21:23 -08:00
tuning.md [SPARK-4668] Fix some documentation typos. 2014-12-15 14:52:17 -08:00

Welcome to the Spark documentation!

This readme will walk you through navigating and building the Spark documentation, which is included here with the Spark source code. You can also find documentation specific to release versions of Spark at http://spark.apache.org/documentation.html.

Read on to learn more about viewing documentation in plain text (i.e., markdown) or building the documentation yourself. Why build it yourself? So that you have the docs that corresponds to whichever version of Spark you currently have checked out of revision control.

Generating the Documentation HTML

We include the Spark documentation as part of the source (as opposed to using a hosted wiki, such as the github wiki, as the definitive documentation) to enable the documentation to evolve along with the source code and be captured by revision control (currently git). This way the code automatically includes the version of the documentation that is relevant regardless of which version or release you have checked out or downloaded.

In this directory you will find textfiles formatted using Markdown, with an ".md" suffix. You can read those text files directly if you want. Start with index.md.

The markdown code can be compiled to HTML using the Jekyll tool. Jekyll and a few dependencies must be installed for this to work. We recommend installing via the Ruby Gem dependency manager. Since the exact HTML output varies between versions of Jekyll and its dependencies, we list specific versions here in some cases:

$ sudo gem install jekyll
$ sudo gem install jekyll-redirect-from

Execute jekyll from the docs/ directory. Compiling the site with Jekyll will create a directory called _site containing index.html as well as the rest of the compiled files.

You can modify the default Jekyll build as follows:

# Skip generating API docs (which takes a while)
$ SKIP_API=1 jekyll build
# Serve content locally on port 4000
$ jekyll serve --watch
# Build the site with extra features used on the live page
$ PRODUCTION=1 jekyll build

Pygments

We also use pygments (http://pygments.org) for syntax highlighting in documentation markdown pages, so you will also need to install that (it requires Python) by running sudo pip install Pygments.

To mark a block of code in your markdown to be syntax highlighted by jekyll during the compile phase, use the following sytax:

{% highlight scala %}
// Your scala code goes here, you can replace scala with many other
// supported languages too.
{% endhighlight %}

Sphinx

We use Sphinx to generate Python API docs, so you will need to install it by running sudo pip install sphinx.

API Docs (Scaladoc and Sphinx)

You can build just the Spark scaladoc by running sbt/sbt doc from the SPARK_PROJECT_ROOT directory.

Similarly, you can build just the PySpark docs by running make html from the SPARK_PROJECT_ROOT/python/docs directory. Documentation is only generated for classes that are listed as public in __init__.py.

When you run jekyll in the docs directory, it will also copy over the scaladoc for the various Spark subprojects into the docs directory (and then also into the _site directory). We use a jekyll plugin to run sbt/sbt doc before building the site so if you haven't run it (recently) it may take some time as it generates all of the scaladoc. The jekyll plugin also generates the PySpark docs Sphinx.

NOTE: To skip the step of building and copying over the Scala and Python API docs, run SKIP_API=1 jekyll.